Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 3 of 356
Found at i:909082 original size:24 final size:22
Alignment explanation
Indices: 909055--909110 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
909045 TTTCATTAAC
909055 TAAATCAATTTTTAATAATAAAAA
1 TAAATCAATTTTT-A-AATAAAAA
* *
909079 TAAATAAAATTTTAAATAAAAA
1 TAAATCAATTTTTAAATAAAAA
*
909101 T-AGTCAATTT
1 TAAATCAATTT
909111 ACTATTTAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 6 0.22
22 9 0.33
23 1 0.04
24 11 0.41
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAATCAATTTTTAAATAAAAA
Found at i:913586 original size:18 final size:18
Alignment explanation
Indices: 913563--913601 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
913553 GAGCACACTT
* *
913563 GCAACAGCAACAGCAGCA
1 GCAACAACAACAACAGCA
913581 GCAACAACAACAACAGCA
1 GCAACAACAACAACAGCA
913599 GCA
1 GCA
913602 GCAATTGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.33, G:0.18, T:0.00
Consensus pattern (18 bp):
GCAACAACAACAACAGCA
Found at i:913594 original size:21 final size:21
Alignment explanation
Indices: 913564--913605 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
913554 AGCACACTTG
*
913564 CAACAGCAACAGCAGCAGCAA
1 CAACAACAACAGCAGCAGCAA
913585 CAACAACAACAGCAGCAGCAA
1 CAACAACAACAGCAGCAGCAA
913606 TTGCAGTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.33, G:0.17, T:0.00
Consensus pattern (21 bp):
CAACAACAACAGCAGCAGCAA
Found at i:921360 original size:30 final size:30
Alignment explanation
Indices: 921283--921361 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
921273 ATAAATTATG
* *
921283 AATTTT-ATTCT-TATATTTTAATTTGATT
1 AATTTTAATTCTATATTTTTTAATTTGATC
* *
921311 AATTTTAATTTTTACATTTTTTAA-TTGATC
1 AATTTTAA-TTCTATATTTTTTAATTTGATC
921341 AATTTTAATCTCTATATTTTT
1 AATTTTAAT-TCTATATTTTT
921362 CAAAATTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
28 6 0.15
29 2 0.05
30 25 0.61
31 8 0.20
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (30 bp):
AATTTTAATTCTATATTTTTTAATTTGATC
Found at i:928842 original size:3 final size:3
Alignment explanation
Indices: 928836--928888 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
928826 GATGATGGTG
928836 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
928884 ATA AT
1 ATA AT
928889 TTAACGCTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:937325 original size:18 final size:18
Alignment explanation
Indices: 937272--937328 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
937262 ACCGTTTACG
*
937272 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
*
937290 GCACTATTCACGTATACA
1 GTACTATTCACGTATACA
*
937308 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
937326 GTA
1 GTA
937329 GTTGGGATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:943027 original size:40 final size:40
Alignment explanation
Indices: 942983--943063 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
942973 ATGATTTGAA
* *
942983 AACTTAGGCTTCTTTTGTATGAGTGTTTAGATTTAAACGT
1 AACTTAAGCTTCTTTTGTATGAGTATTTAGATTTAAACGT
*
943023 AACTTAAGCTTCTTTTGTATGAGTATTTGGATTTAAACGT
1 AACTTAAGCTTCTTTTGTATGAGTATTTAGATTTAAACGT
943063 A
1 A
943064 CTTGTAGCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (40 bp):
AACTTAAGCTTCTTTTGTATGAGTATTTAGATTTAAACGT
Found at i:944681 original size:28 final size:29
Alignment explanation
Indices: 944616--944702 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 29
944606 AAAATTTCAA
*
944616 AAAAATTACATCTTAGACCCCTGAACTTTTCT
1 AAAAATTACAT-TTAGA-CCCT-AAATTTTCT
*
944648 -TAAATTACATTTA-ACCCTAAATTTTCT
1 AAAAATTACATTTAGACCCTAAATTTTCT
*
944675 AAAAATTACATTTAGCCCCATAAATTTT
1 AAAAATTACATTTAGACCC-TAAATTTT
944703 ACTGCATTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
27 8 0.17
28 16 0.33
29 4 0.08
30 11 0.23
31 9 0.19
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAAATTACATTTAGACCCTAAATTTTCT
Found at i:944952 original size:17 final size:16
Alignment explanation
Indices: 944905--944941 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
944895 AAAAAAGAGC
*
944905 AAAAAATTCCAGCAAA
1 AAAAAATTCTAGCAAA
944921 AAAAAATTCTAGCAAA
1 AAAAAATTCTAGCAAA
944937 AAAAA
1 AAAAA
944942 TATATTAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.68, C:0.14, G:0.05, T:0.14
Consensus pattern (16 bp):
AAAAAATTCTAGCAAA
Found at i:945189 original size:20 final size:20
Alignment explanation
Indices: 945151--945192 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
945141 TGTTTTCATA
* *
945151 TTTTCTTTCCTTGGTTTTTT
1 TTTTCTTTCCTTAGATTTTT
*
945171 TTTTCTTTCTTTAGATTTTT
1 TTTTCTTTCCTTAGATTTTT
945191 TT
1 TT
945193 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTTCTTTCCTTAGATTTTT
Found at i:950181 original size:12 final size:12
Alignment explanation
Indices: 950164--950188 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
950154 TGTCAAGATT
950164 TATTCTAATATA
1 TATTCTAATATA
950176 TATTCTAATATA
1 TATTCTAATATA
950188 T
1 T
950189 GATTAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTCTAATATA
Found at i:951589 original size:20 final size:20
Alignment explanation
Indices: 951551--951598 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
951541 TAAATTCTAA
* **
951551 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
951571 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
951591 AAA-ATAAA
1 AAAGATAAA
951599 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:953320 original size:43 final size:42
Alignment explanation
Indices: 953273--953365 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
953263 TGAAAAGGGG
* * * *
953273 TGTTTGGCTGCAG-GTTTTGGGGATTCTAAGGCTGGAATAGGAC
1 TGTTTGGCTGCAGAGATAT-GGCATTCT-AGGCTGGAATAGAAC
*
953316 TGTTTGGCTGCAGAGATATGGCATTCTGGGCTGGAATAGAAC
1 TGTTTGGCTGCAGAGATATGGCATTCTAGGCTGGAATAGAAC
953358 TGTTTGGC
1 TGTTTGGC
953366 AGCATGGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 21 0.48
43 20 0.45
44 3 0.07
ACGTcount: A:0.19, C:0.13, G:0.35, T:0.32
Consensus pattern (42 bp):
TGTTTGGCTGCAGAGATATGGCATTCTAGGCTGGAATAGAAC
Found at i:954768 original size:19 final size:19
Alignment explanation
Indices: 954739--954784 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
954729 TGTATGGTTT
954739 TAAATAA-ATACACATGTA
1 TAAATAATATACACATGTA
*
954757 TTAATAATATACACATGTA
1 TAAATAATATACACATGTA
954776 TAAATAATA
1 TAAATAATA
954785 AATAAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (19 bp):
TAAATAATATACACATGTA
Found at i:955682 original size:15 final size:15
Alignment explanation
Indices: 955634--955683 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
955624 TTTATCAAAT
955634 TTATATTGATTGAAA
1 TTATATTGATTGAAA
* * *
955649 TCATTTTGATTGAAT
1 TTATATTGATTGAAA
955664 TTATATTGATTGAAA
1 TTATATTGATTGAAA
955679 TTATA
1 TTATA
955684 ATATATATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATATTGATTGAAA
Found at i:956183 original size:29 final size:27
Alignment explanation
Indices: 956125--956221 Score: 80
Period size: 27 Copynumber: 3.6 Consensus size: 27
956115 AATGCCTTAT
*
956125 TGGTGTGTTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATAATATAC
*
956152 TGGTGTGTTAT-GGAGGATTTATAATATTC
1 TGGTGTGTT-TGGGAGGA--TATAATATAC
*
956181 TGGGTGTGTTTGGGTTGG--AT-AT-T-C
1 T-GGTGTGTTTGGG-AGGATATAATATAC
956205 TGGTGTGTTTGGGAGGA
1 TGGTGTGTTTGGGAGGA
956222 ATCCGCGTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
22 2 0.03
23 12 0.20
24 2 0.03
25 1 0.02
26 2 0.03
27 17 0.29
28 1 0.02
29 10 0.17
30 10 0.17
31 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.38, T:0.41
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATAATATAC
Found at i:956359 original size:13 final size:13
Alignment explanation
Indices: 956310--956349 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
956300 TTGAGCTATT
956310 AGAA-TGAAA-TG
1 AGAATTGAAATTG
956321 AGAAATTG-AATTG
1 AG-AATTGAAATTG
956334 AGAATTGAAATTG
1 AGAATTGAAATTG
956347 AGA
1 AGA
956350 TATGAGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 14 0.56
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (13 bp):
AGAATTGAAATTG
Found at i:960903 original size:20 final size:20
Alignment explanation
Indices: 960865--960912 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
960855 TAAATTCTAA
* **
960865 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
960885 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
960905 AAA-ATAAA
1 AAAGATAAA
960913 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:962382 original size:17 final size:17
Alignment explanation
Indices: 962297--962382 Score: 57
Period size: 19 Copynumber: 4.6 Consensus size: 17
962287 TGCAAATGAA
962297 ATAAATGAAATAGAAATAT
1 ATAAAT-AAATA-AAATAT
962316 ATAAATAATATAAAATTAAT
1 ATAAATAA-ATAAAA-T-AT
**
962336 ATTAATATAATATTCTAATAT
1 A-TAA-ATAA-A-TAAAATAT
*
962357 AT-TATAAATAAAATAT
1 ATAAATAAATAAAATAT
962373 ATAAATAAAT
1 ATAAATAAAT
962383 TTTAGATGAC
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
16 8 0.15
17 7 0.13
18 9 0.17
19 10 0.19
20 4 0.07
21 6 0.11
22 7 0.13
23 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (17 bp):
ATAAATAAATAAAATAT
Found at i:964123 original size:18 final size:18
Alignment explanation
Indices: 964082--964124 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
964072 TCTTTTATAT
*
964082 TTTATATTTAATATAATA
1 TTTATATTTAATATAAAA
*
964100 TTTATATTTGATA-AAAA
1 TTTATATTTAATATAAAA
964117 TTATATAT
1 TT-TATAT
964125 GTTGGCATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TTTATATTTAATATAAAA
Found at i:965346 original size:14 final size:14
Alignment explanation
Indices: 965327--965356 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
965317 TATTTTCAAG
965327 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
965341 ATAGATTCACGCAT
1 ATAGATTAACGCAT
965355 AT
1 AT
965357 TTATAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:966072 original size:59 final size:60
Alignment explanation
Indices: 966001--966141 Score: 257
Period size: 59 Copynumber: 2.4 Consensus size: 60
965991 TATTGTCGGG
966001 ATTACCAGTCCAGGCTAAATTCCCTGCAACGACAATTACTCTAATGA-GCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTGCAACGACAATTACTCTAATGATGCTTGGATCTGA
*
966060 ATTACCACTCCAGGCTAAATTCCCTGCAACGACAATTACTCTAATGATGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTGCAACGACAATTACTCTAATGATGCTTGGATCTGA
*
966120 ATTACCAGTCCAAGCTAAATTC
1 ATTACCAGTCCAGGCTAAATTC
966142 AAACCCTAAT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
59 46 0.59
60 32 0.41
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATTCCCTGCAACGACAATTACTCTAATGATGCTTGGATCTGA
Found at i:967834 original size:30 final size:29
Alignment explanation
Indices: 967799--967879 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 29
967789 TAGCCTTTGT
967799 CACCACCAATTCTACTAGCCACACTTGCTC
1 CACCACCAATTC-ACTAGCCACACTTGCTC
967829 CACCACCAACTTCACTAGCCACACTTGCTC
1 CACCACCAA-TTCACTAGCCACACTTGCTC
* * *
967859 CACTACCTACTCCACTAGCCA
1 CACCACC-AATTCACTAGCCA
967880 TTTTTACCCG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
30 42 0.91
31 4 0.09
ACGTcount: A:0.27, C:0.46, G:0.06, T:0.21
Consensus pattern (29 bp):
CACCACCAATTCACTAGCCACACTTGCTC
Found at i:968068 original size:23 final size:23
Alignment explanation
Indices: 968031--968158 Score: 84
Period size: 23 Copynumber: 5.5 Consensus size: 23
968021 TTTTTTTTGT
*
968031 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
968054 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
968076 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
968099 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
968122 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
968147 TATTATTTATAT
1 TATTATATATAT
968159 ATATACATGT
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:968134 original size:25 final size:24
Alignment explanation
Indices: 968096--968236 Score: 108
Period size: 25 Copynumber: 5.9 Consensus size: 24
968086 ATTCTAAATT
*
968096 CTATATTACGTATATATA-TTATA
1 CTATATTATGTATATATATTTATA
* *
968119 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATATTT-ATA
* ** *
968144 CTATATTATTTATATATATACATG
1 CTATATTATGTATATATATTTATA
* *
968168 TTATCTTATGTATATAT-TTTA-A
1 CTATATTATGTATATATATTTATA
* * * *
968190 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATA-TATTTATA
* *
968215 CTATATTATGTACATATTTTTA
1 CTATATTATGTATATATATTTA
968237 ATATTATCAC
Statistics
Matches: 93, Mismatches: 20, Indels: 9
0.76 0.16 0.07
Matches are distributed among these distances:
22 14 0.15
23 18 0.19
24 28 0.30
25 33 0.35
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
CTATATTATGTATATATATTTATA
Found at i:968160 original size:46 final size:44
Alignment explanation
Indices: 968108--968207 Score: 105
Period size: 46 Copynumber: 2.2 Consensus size: 44
968098 ATATTACGTA
* *
968108 TATATATTATAC-TATTTTATGTATATATCTTTAATACTATATTATT
1 TATATATTATACTTATCTTATGTATATAT-TTTAAT--TATATTATG
968154 TATATA-TATACATGTTATCTTATGTATATATTTTAATTATATTATG
1 TATATATTATAC---TTATCTTATGTATATATTTTAATTATATTATG
*
968200 TATGTATT
1 TATATATT
968208 TTTTACACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
45 5 0.11
46 19 0.41
47 1 0.02
48 6 0.13
49 15 0.33
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (44 bp):
TATATATTATACTTATCTTATGTATATATTTTAATTATATTATG
Found at i:968242 original size:20 final size:20
Alignment explanation
Indices: 968217--968275 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
968207 TTTTTACACT
968217 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
968237 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
968260 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
968276 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:975608 original size:28 final size:27
Alignment explanation
Indices: 975577--975633 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
975567 TAAAATAGAA
* *
975577 TATACACAAAGATTTAAAATAAATCATG
1 TATACA-AAAAATTTAAAATAAATAATG
*
975605 TATATAAAAAATTTAAAATAAATAATG
1 TATACAAAAAATTTAAAATAAATAATG
975632 TA
1 TA
975634 AAAATAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (27 bp):
TATACAAAAAATTTAAAATAAATAATG
Found at i:976444 original size:23 final size:23
Alignment explanation
Indices: 976409--976466 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
976399 TAATAATAGA
976409 ATTAA-TAATAAAAATAA-AGTTG
1 ATTAATTAATAAAAA-AATAGTTG
*
976431 ATTAATTAATAAAAAAATGGTTG
1 ATTAATTAATAAAAAAATAGTTG
976454 ATTAATTAA-AAAA
1 ATTAATTAATAAAA
976467 GGACTATATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 11 0.33
23 22 0.67
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTAATTAATAAAAAAATAGTTG
Found at i:979438 original size:19 final size:19
Alignment explanation
Indices: 979385--979442 Score: 50
Period size: 18 Copynumber: 3.2 Consensus size: 19
979375 GCTGGGTTCG
* *
979385 TTTTTTGAACATAT-TTTA
1 TTTTTTGAGCTTATATTTA
* * *
979403 TTTTTT-TGTTTAAATTTA
1 TTTTTTGAGCTTATATTTA
979421 TTTTTTGAGCTTATATTT-
1 TTTTTTGAGCTTATATTTA
979439 TTTT
1 TTTT
979443 CAAATCAATT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
17 2 0.07
18 20 0.67
19 8 0.27
ACGTcount: A:0.21, C:0.03, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTTTTGAGCTTATATTTA
Found at i:979792 original size:41 final size:41
Alignment explanation
Indices: 979747--979826 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
979737 ATTTCACCAC
*
979747 CAAACTTTAAATAACTCTAATCTTCTCACCCTAGTAATAAA
1 CAAACTTTAAATAACTCTAATCTTCTCACCCTAGCAATAAA
*
979788 CAAACTTTAAATAACTCTGATCTTCTCACCCTAGCAATA
1 CAAACTTTAAATAACTCTAATCTTCTCACCCTAGCAATA
979827 GCCAACGCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.39, C:0.26, G:0.04, T:0.31
Consensus pattern (41 bp):
CAAACTTTAAATAACTCTAATCTTCTCACCCTAGCAATAAA
Found at i:983002 original size:18 final size:18
Alignment explanation
Indices: 982979--983016 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
982969 CGAGATGGGT
982979 TGGGCTTCCTATTTCATG
1 TGGGCTTCCTATTTCATG
982997 TGGGCTTCCTATTTCATG
1 TGGGCTTCCTATTTCATG
983015 TG
1 TG
983017 ACCAGGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.24, T:0.45
Consensus pattern (18 bp):
TGGGCTTCCTATTTCATG
Found at i:983686 original size:24 final size:22
Alignment explanation
Indices: 983632--983689 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 22
983622 AAAAAATATT
*
983632 AAAAT-ATAATATTAGAATAAA
1 AAAATAATAATATTACAATAAA
*
983653 AATAACAATAATATTCACAATAAA
1 AA-AATAATAATATT-ACAATAAA
983677 GAAAATAATAATA
1 -AAAATAATAATA
983690 AAAAATAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.07
22 2 0.07
23 8 0.27
24 16 0.53
25 2 0.07
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (22 bp):
AAAATAATAATATTACAATAAA
Found at i:988137 original size:20 final size:20
Alignment explanation
Indices: 988114--988159 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
988104 AAGTTTAAAG
988114 TTAATTATAAAAATTAATTA
1 TTAATTATAAAAATTAATTA
* **
988134 TTAATTTTATCAATTAATTA
1 TTAATTATAAAAATTAATTA
*
988154 CTAATT
1 TTAATT
988160 TTAATTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATTATAAAAATTAATTA
Found at i:988160 original size:20 final size:20
Alignment explanation
Indices: 988125--988162 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
988115 TAATTATAAA
*
988125 AATTAATTATTAATTTTATC
1 AATTAATTACTAATTTTATC
988145 AATTAATTACTAATTTTA
1 AATTAATTACTAATTTTA
988163 ATTAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTAATTACTAATTTTATC
Found at i:988482 original size:17 final size:18
Alignment explanation
Indices: 988456--988490 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
988446 ATATATATAC
*
988456 AATTTTAATTTTA-ATTT
1 AATTTAAATTTTACATTT
988473 AATTTAAATTTTACATTT
1 AATTTAAATTTTACATTT
988491 TATTAGCACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
AATTTAAATTTTACATTT
Found at i:992134 original size:30 final size:30
Alignment explanation
Indices: 992084--992143 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
992074 ATTAAGTTCA
992084 TAGAATTAAAATTACATTAATTGA-AAAAAT
1 TAGAATTAAAATTACATTAATT-ATAAAAAT
992114 TAGACATTATAAATT-C-TTAATTATAAAAAT
1 TAGA-ATTA-AAATTACATTAATTATAAAAAT
992144 AAGTACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
29 1 0.04
30 16 0.59
31 5 0.19
32 5 0.19
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (30 bp):
TAGAATTAAAATTACATTAATTATAAAAAT
Found at i:997976 original size:174 final size:171
Alignment explanation
Indices: 997673--998257 Score: 665
Period size: 174 Copynumber: 3.3 Consensus size: 171
997663 GTTTGGAATA
* * *
997673 TGAGTGTTGTTTTGTAGTAAGTGCAGCGATGATTAAAATGAGGTTTAGGGTTAACGAGGCAAGGC
1 TGAGTGTTGTTTTGTAGTAAGCGCAGCGATGATTAAAATGAGGTTTAGGGTTAACGAGCCAAGGA
* * * * *
997738 TTTGCCTTAGCTTTGATTACAATATAATCCCTAATGAGCTGCCTTTATCTTTCTTACGACGTTTT
66 TTTGCCTAAGCTATGATTACAATATAATCACTAATGAGCTGCCGTTATCTTTTTTACGACGTTTT
997803 TCCGATTGAATGTTCAAGATTTATAAACAAATGTTTGGTTTT
131 TCCGATTGAATGTTCAAGATTT-TAAACAAATGTTTGGTTTT
* * *
997845 CGAGTGTTGTTTTGTAGT-GGTTGCAGCGATGATTAAAATGAGGTTTAGGGTTGTAACGAGCCAA
1 TGAGTGTTGTTTTGTAGTAAG-CGCAGCGATGATTAAAATGAGGTTTAGGG-T-TAACGAGCCAA
** * * * *
997909 GTTTTTGCCTAAGCCATGAATACAATATAATCTCTAATGAGCTGCCGTTATCTTTTTTACAACGT
63 GGATTTGCCTAAGCTATGATTACAATATAATCACTAATGAGCTGCCGTTATCTTTTTTACGACGT
** *
997974 TTTTCCGACCGAATGTTCAAAATTTTAAACAAATGTTTGGTTTTT
128 TTTTCCGATTGAATGTTCAAGATTTTAAACAAATGTTTGG-TTTT
* * *
998019 TGAGTGTTGTTTTGTGGTAAGCGAAGCGATGATTTAAAATAAATTGAGGTGTAGGGTTGTAACGA
1 TGAGTGTTGTTTTGTAGTAAGCGCAGCGATGA-TT---A-AAA-TGAGGTTTAGGG-T-TAACGA
* * * * *
998084 GCGAAGGATGTGCCTAAGCTATG-TTCCCAATATAATCACTAATTAGGTGCCGTTAGTCTTTTTT
58 GCCAAGGATTTGCCTAAGCTATGATT-ACAATATAATCACTAATGAGCTGCCGTTA-TCTTTTTT
* * *
998148 ACGGCGTTTTTCCAATTTGAA-GTTCAAGATTTTCAAACAATTGTTT-GTTTT
121 ACGACGTTTTTCCGA-TTGAATGTTCAAGATTTT-AAACAAATGTTTGGTTTT
* * * **
998199 TGAATGTTGTTTTGTAGTAATCGCAGCCATGATTAAAACAAGGTTTAGGGTTAACGAGC
1 TGAGTGTTGTTTTGTAGTAAGCGCAGCGATGATTAAAATGAGGTTTAGGGTTAACGAGC
998258 GAAGTCTTGT
Statistics
Matches: 351, Mismatches: 47, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
171 1 0.00
172 54 0.15
173 17 0.05
174 125 0.36
175 6 0.02
176 1 0.00
178 1 0.00
179 6 0.02
180 94 0.27
181 32 0.09
182 14 0.04
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (171 bp):
TGAGTGTTGTTTTGTAGTAAGCGCAGCGATGATTAAAATGAGGTTTAGGGTTAACGAGCCAAGGA
TTTGCCTAAGCTATGATTACAATATAATCACTAATGAGCTGCCGTTATCTTTTTTACGACGTTTT
TCCGATTGAATGTTCAAGATTTTAAACAAATGTTTGGTTTT
Found at i:998927 original size:26 final size:26
Alignment explanation
Indices: 998898--998950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
998888 CTTAAATATG
998898 TTAGCTATTGTAGGTTTGTACTTTAC
1 TTAGCTATTGTAGGTTTGTACTTTAC
*
998924 TTAGCTATTGTAGGTTTGTGCTTTAC
1 TTAGCTATTGTAGGTTTGTACTTTAC
998950 T
1 T
998951 AATCAAAGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.17, C:0.11, G:0.21, T:0.51
Consensus pattern (26 bp):
TTAGCTATTGTAGGTTTGTACTTTAC
Found at i:999904 original size:30 final size:30
Alignment explanation
Indices: 999868--999936 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
999858 CTAGCCTTTG
*
999868 CCACCACCAACTCCACTAGTCACAATTGCT
1 CCACCACCAACTCCACTAGCCACAATTGCT
* * *
999898 CCACCACCAACTCTATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACAATTGCT
*
999928 CCACTACCA
1 CCACCACCA
999937 CTTGTACCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.45, G:0.06, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACAATTGCT
Found at i:1000424 original size:31 final size:31
Alignment explanation
Indices: 1000386--1000448 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
1000376 TGGCCGGAAA
1000386 TCACCCACCCTCTCCCTCTCTTTTTTTTTCT
1 TCACCCACCCTCTCCCTCTCTTTTTTTTTCT
1000417 TCACCCACCCTCTCCCTCTCTTTTTTTTTCT
1 TCACCCACCCTCTCCCTCTCTTTTTTTTTCT
1000448 T
1 T
1000449 TCCTTTCAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.06, C:0.44, G:0.00, T:0.49
Consensus pattern (31 bp):
TCACCCACCCTCTCCCTCTCTTTTTTTTTCT
Found at i:1004990 original size:25 final size:26
Alignment explanation
Indices: 1004948--1004996 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
1004938 ATTATTATTA
*
1004948 AAAGTAAAGTAAATAG-AAAGAAAAT
1 AAAGTAAAGTAAAAAGAAAAGAAAAT
1004973 AAAGTAAAG-AACAAAGAAAAGAAA
1 AAAGTAAAGTAA-AAAGAAAAGAAA
1004997 CAGAATAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 2 0.10
25 12 0.57
26 7 0.33
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.10
Consensus pattern (26 bp):
AAAGTAAAGTAAAAAGAAAAGAAAAT
Found at i:1006565 original size:21 final size:23
Alignment explanation
Indices: 1006506--1006571 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
1006496 GCTTTACTGA
1006506 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
1006529 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
1006551 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
1006572 ACTGATTAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:1010885 original size:78 final size:75
Alignment explanation
Indices: 1010475--1011748 Score: 1293
Period size: 72 Copynumber: 17.0 Consensus size: 75
1010465 TTCCGTTTTC
** * *
1010475 AAAAATCAACTCATATTGCGAGAGGTGAGTAGAGCCTC-AGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAAT
1010539 TTCTG-TTTTC--
63 TTCTGTTTTTCAA
* * * * *
1010549 AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAGGTATTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1010614 TG-TTTTC--
66 TGTTTTTCAA
* * ** * ** *
1010621 AAAAATCAAATCATATTGCAAGAGGTGAGTTGAGCCTC-GGTTCACATACTGAGGCATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAAT
***
1010685 TTCTACCTTTCAA
63 TTCTGTTTTTCAA
**
1010698 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
1010763 AGTTTTT---
66 TGTTTTTCAA
* *
1010770 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1010835 TGTTTTTCAAAAA
66 TGTTTTTC---AA
*
1010848 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
1010913 TGTCTTTCAA
66 TGTTTTTCAA
** * * *
1010923 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
1010988 TG-TTGTCAA
66 TGTTTTTCAA
*
1010997 AAAAATCAA--C---TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1011057 TG-TTTTC--
66 TGTTTTTCAA
* *
1011064 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTT-AATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTT
1011128 CTG-TTTTC--
65 CTGTTTTTCAA
* * *
1011136 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCATGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1011201 TGTTTTTCAAAAA
66 TGTTTTTC---AA
* *
1011214 AAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
*
1011279 TGTCTTTCAA
66 TGTTTTTCAA
** *
1011289 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTT
* *
1011353 CTG-TTGTCCA
65 CTGTTTTTCAA
** *** * *
1011363 AAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAAGACAAGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
1011428 TG-TTTTC--
66 TGTTTTTCAA
* ** * *
1011435 AAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAAT
**
1011499 TTCTGCCTTTCAAA
63 TTCTGTTTTTC-AA
* ** ** * *
1011513 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGCGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACACGCTGAGGTATTTTCAAT
*
1011577 TTCTGTCTTTCAAA
63 TTCTGTTTTTC-AA
** * * *
1011591 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACACGCTGAGGTA---TTTTCA
* *
1011656 ATTTATATTTTTCAA
61 ATTTCTGTTTTTCAA
* * *
1011671 AAAAATCAACTCACATT--GAGAAATGTGAGTTGAGCCTCAGGTCACATG-TCGAGGTATTTTCA
1 AAAAATCAACTCATATTGCGAGAAA--TGAGTTGAGCCTCAAG--ACACGCT-GAGGTATTTTCA
**
1011733 AAATCTGTTTTTCAA
61 ATTTCTGTTTTTCAA
1011748 A
1 A
1011749 TTCTGTTTTC
Statistics
Matches: 1032, Mismatches: 118, Indels: 97
0.83 0.09 0.08
Matches are distributed among these distances:
67 8 0.01
69 51 0.05
71 7 0.01
72 270 0.26
73 15 0.01
74 153 0.15
75 156 0.15
76 5 0.00
77 53 0.05
78 255 0.25
79 2 0.00
80 40 0.04
81 17 0.02
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAA
Found at i:1011142 original size:366 final size:366
Alignment explanation
Indices: 1010475--1011711 Score: 1533
Period size: 366 Copynumber: 3.3 Consensus size: 366
1010465 TTCCGTTTTC
** *
1010475 AAAAATCAACTCATATTGCGAGAGGTGAGTAGAGCCTC-AGTTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGCTGAGGTATTTTCAAT
* * ** * * *
1010539 TTCTGT-TTTC--AAAATTCAACTTATATTGCGAGAAATGAGTTGAGCTTCAAGACACGTTGAGG
63 TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* * * * * *
1010601 TATTTTCAATTTATGTTTTCAAAAATCAAATCATA-TTGCAAGAGGTGAGTTGAGCCTC-GGTTC
128 TAATTTCAATTTCTGTTGTC-AAAA--AAATCA-ACTTGCGAGAGGTGAGTTGAGCCTCAAG-AC
* * **
1010664 ACATACTGAGGCATTTTCAATTTCTACCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTT
188 ACGT--TGAGGTATTTTCAATTTCT-GTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTT
* * *
1010729 GAGCCTCAAGACACATTGAGGTATTTTCAATTTCAGTTTTTAAAATTCAACTCATATTGCGAGAA
248 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAA
*
1010794 ATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
313 ATGAGTTGAGCCTCATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
1010848 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
*
1010913 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAA
66 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
**
1010978 TTTCAATTTCTGTTGTCAAAAAAATCAACTTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
131 TTTCAATTTCTGTTGTCAAAAAAATCAACTTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
1011043 GTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
196 GTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1011108 CGTTGAGGTAATTTT-AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
261 CGTTGAGGT-ATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
1011172 TCATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
325 TCATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
*
1011214 AAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1011279 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* * * *
1011344 TTTTAATTTCTGTTGTCCAAAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAAGACAAG
131 TTTCAATTTCTGTTGTCAAAAAAATCAAC-----TTGCGAGAGGTGAGTTGAGCCTCAAGACACG
* **
1011409 TTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTC-
191 TTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * * * * **
1011473 GGTTCACATGCTGAGGTATTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGG
256 AG---ACACGTTGAGGTATTTTCAATTTCTG-TTTTC---AAAATTCAACTCATATTGCGAGAAA
* ** * *
1011538 TGAGTTGAGCCTTGGC-TCACGCGCTGAGCTATTTTCAATTTCTGTCTTTC--AAA
314 TGAGTTGAGCC-T--CATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
** * * **
1011591 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTTCA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACATGCTGAGGTA---TTTTCA
* * * * * * *
1011656 ATTTATATTTTTCAAAAAAATCAACTCACATTGAGAAATGTGAGTTGAGCCTCAGG
61 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1011712 TCACATGTCG
Statistics
Matches: 769, Mismatches: 67, Indels: 47
0.87 0.08 0.05
Matches are distributed among these distances:
366 294 0.38
367 5 0.01
368 4 0.01
369 18 0.02
370 2 0.00
371 144 0.19
372 10 0.01
373 57 0.07
374 67 0.09
377 70 0.09
378 2 0.00
379 40 0.05
380 1 0.00
382 55 0.07
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (366 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
TTTCAATTTCTGTTGTCAAAAAAATCAACTTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
CGTTGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
CATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAA
Found at i:1011514 original size:515 final size:511
Alignment explanation
Indices: 1010524--1011516 Score: 1419
Period size: 515 Copynumber: 1.9 Consensus size: 511
1010514 GTTCACATGC
* *
1010524 TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCTTCAA
1 TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
**
1010589 GACACGTTGAGGTATTTTCAATTTATGTTTTCAAAAATCAAATCATATTGCAAGAGGTGAGTTGA
66 GACACGTTGAGGTATTTTCAATTTATGTTTTCAAAAATCAAATCATATTGCAAGAAATGAGTTGA
*
1010654 GCCTCGGTTCACATACTGAGGCATTTTCAATTTCTACCTTTCAAAAAAATCAACTCATATTGCGA
131 GCCTC-GATCACATACTGAGGCATTTTCAATTTCTACCTTTCAAAAAAATCAACTCATATTGCGA
* * * *
1010719 GAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCAGTTTTTAAAATTCAACTCAT
195 GAAATGAGTTAAGCCTCAAGACACACTGAGGTATTTTCAATTTCAGTTTTAAAAAATCAACTCAT
* *
1010784 ATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAA
260 ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTGTC--AAAA
* *
1010849 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCT
323 AAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACAAGCTGAGGTATTTTCAATTTCT
*
1010914 GTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAAT
388 GTCTTTC-AAAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAAT
1010979 TTCAATTTCTGTTGTCAAAAAAATCAACTTGCGAGAAATGAGTTGAGCCTCAAGACACGT
452 TTCAATTTCTGTTGTCAAAAAAATCAACTTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1011039 TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
1 TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
* * * *
1011104 GACACGTTGAGGTAATTTT-AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
66 GACACGTTGAGGT-ATTTTCAATTTATGTTTTCAAAAATCAAATCATATTGCAAGAAATGAGTTG
* * * ***
1011168 AGCCTC-ATGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTG
130 AGCCTCGATCACATACTGAGGCATTTTCAATTTCTACCTTTC---AAAAAAATCAACTCATATTG
** *
1011232 CGAGAAATGAGTTAAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCA
192 CGAGAAATGAGTTAAGCCTCAAGACACACTGAGGTATTTTCAATTTCAGT-TTT--AAAAAATCA
** *
1011297 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-AATTTCTG-TTGT
254 ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTCAATTTCTGTTTGT
* ** ** *
1011360 C-CAAAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAAGACAAGTTGAGGTATTTTCAA
318 CAAAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACAAGCTGAGGTATTTTCAA
*
1011424 TTTCTGT-TTTC-AAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTC-GGTTCACATGCTG
383 TTTCTGTCTTTCAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTCAGG---ACACGCTG
* *
1011486 AGGTATTTTCAATTTCTGCCTT-TCAAAAAAA
445 AAGTAATTTCAATTTCTG--TTGTCAAAAAAA
1011517 ATCGACTCAT
Statistics
Matches: 426, Mismatches: 39, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
511 2 0.00
512 37 0.09
513 28 0.07
514 27 0.06
515 192 0.45
516 72 0.17
517 3 0.01
518 4 0.01
519 56 0.13
520 5 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (511 bp):
TGAGGTATTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
GACACGTTGAGGTATTTTCAATTTATGTTTTCAAAAATCAAATCATATTGCAAGAAATGAGTTGA
GCCTCGATCACATACTGAGGCATTTTCAATTTCTACCTTTCAAAAAAATCAACTCATATTGCGAG
AAATGAGTTAAGCCTCAAGACACACTGAGGTATTTTCAATTTCAGTTTTAAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTGTCAAAAAAA
ATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGACAAGCTGAGGTATTTTCAATTTCTGTC
TTTCAAAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTCAGGACACGCTGAAGTAATTTCA
ATTTCTGTTGTCAAAAAAATCAACTTGCGAGAAATGAGTTGAGCCTCAAGACACGT
Found at i:1011730 original size:80 final size:81
Alignment explanation
Indices: 1011211--1011716 Score: 248
Period size: 78 Copynumber: 6.6 Consensus size: 81
1011201 TGTTTTTCAA
* * * **
1011211 AAAAAAAATCAACTCATATTGCGAGAAA--TGAGTTAAGCCTCA-A-GACATGCTGAGGTA---T
1 AAAAAAAATCAACTCACATT--GAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTT
* *
1011269 TTTCAATTTCTGTCTTTC
64 TTTCAATTTATATCTTTC
* * * * * *
1011287 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--ATTT
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTTTT
* * *
1011347 T-AATTTCTGT-TGTC
66 TCAATTTATATCTTTC
* *** * * * **
1011361 -CAAAAAATCAACTTGTATTGCGAGAGGCGAGTTGAGCCTCAAGA-CA-A-GTTGAGGTA---TT
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTC-AGATCACACACTGAGGTATTTTT
* *
1011419 TTCAATTTCTGT-TTTC
65 TTCAATTTATATCTTTC
* ** * * * **
1011435 ---AAAAATCAACTCATATTGCCAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTA---TTT
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTTTT
* **
1011494 TCAATTTCTGCCTTTC
66 TCAATTTATATCTTTC
* * * * ** * * * *
1011510 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA---TTT
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTTTT
* *
1011572 TCAATTTCTGTCTTTC
66 TCAATTTATATCTTTC
* * * *
1011588 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTTTT
*
1011653 TCAATTTATATTTTTC
66 TCAATTTATATCTTTC
* *
1011669 -AAAAAAATCAACTCACATTGAGAAATGTGAGTTGAGCCTCAGGTCACA
1 AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACA
1011717 TGTCGAGGTA
Statistics
Matches: 368, Mismatches: 45, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
71 1 0.00
72 36 0.10
73 9 0.02
74 80 0.22
75 61 0.17
76 5 0.01
78 118 0.32
80 42 0.11
81 16 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (81 bp):
AAAAAAAATCAACTCACATTGAGAAAGGTGAGTTGAGCCTCAGATCACACACTGAGGTATTTTTT
TCAATTTATATCTTTC
Found at i:1011743 original size:13 final size:14
Alignment explanation
Indices: 1011727--1011762 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1011717 TGTCGAGGTA
1011727 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
*
1011741 TTTTCAAATTCTG-
1 TTTTCAAAATCTGT
1011754 TTTTCAAAA
1 TTTTCAAAA
1011763 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:1011829 original size:53 final size:53
Alignment explanation
Indices: 1011749--1011859 Score: 186
Period size: 53 Copynumber: 2.1 Consensus size: 53
1011739 GTTTTTCAAA
1011749 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAAT
1 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAAT
* * * *
1011802 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGATTTGAGCTTTTTAAT
1 TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAAT
1011855 TTCTG
1 TTCTG
1011860 CGAGAGGTGA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (53 bp):
TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAAT
Found at i:1011864 original size:30 final size:30
Alignment explanation
Indices: 1011828--1011889 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
1011818 CAACTCATAT
* *
1011828 TGCGAGAGGTGATTTGAGCTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1011858 TGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1011888 TG
1 TG
1011890 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.40
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGCCTTTTAATTTC
Found at i:1011878 original size:83 final size:84
Alignment explanation
Indices: 1011775--1011930 Score: 260
Period size: 84 Copynumber: 1.9 Consensus size: 84
1011765 CAACTCATAT
*
1011775 TGCGAGAAGTGAGTTAAGCCTTTTAATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTG
1 TGCGAGAAGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTG
*
1011839 ATTTGAGCTTTTTAATTTC
66 AGTTGAGCTTTTTAATTTC
* * *
1011858 TGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTATGAGAGGTG
1 TGCGAGAAGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTG
1011923 AGTTGAGC
66 AGTTGAGC
1011931 CTCGAGTCAC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 30 0.45
84 37 0.55
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.38
Consensus pattern (84 bp):
TGCGAGAAGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTACGAGAGGTG
AGTTGAGCTTTTTAATTTC
Found at i:1012804 original size:12 final size:12
Alignment explanation
Indices: 1012787--1012816 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
1012777 GCCACAATTG
1012787 CTCCACCACCAA
1 CTCCACCACCAA
1012799 CTCCACCACCAA
1 CTCCACCACCAA
1012811 CTCCAC
1 CTCCAC
1012817 TAGCCACACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.60, G:0.00, T:0.10
Consensus pattern (12 bp):
CTCCACCACCAA
Found at i:1012805 original size:42 final size:42
Alignment explanation
Indices: 1012759--1012846 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
1012749 CTAGCCTTTG
*
1012759 CCACCACAAACTCCATTAGCCACAATTGCTCCACCACCAACT
1 CCACCACAAACTCCACTAGCCACAATTGCTCCACCACCAACT
* * * *
1012801 CCACCACCAACTCCACTAGCCACACTTGCTCCACTACCTACT
1 CCACCACAAACTCCACTAGCCACAATTGCTCCACCACCAACT
1012843 CCAC
1 CCAC
1012847 TAGCCACACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.49, G:0.05, T:0.17
Consensus pattern (42 bp):
CCACCACAAACTCCACTAGCCACAATTGCTCCACCACCAACT
Found at i:1012833 original size:30 final size:30
Alignment explanation
Indices: 1012799--1012869 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
1012789 CCACCACCAA
*
1012799 CTCCACCACCAACTCCACTAGCCACACTTG
1 CTCCACTACCAACTCCACTAGCCACACTTG
*
1012829 CTCCACTACCTACTCCACTAGCCACACTTG
1 CTCCACTACCAACTCCACTAGCCACACTTG
1012859 CTCCACTACCA
1 CTCCACTACCA
1012870 CTTGTACCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.49, G:0.06, T:0.20
Consensus pattern (30 bp):
CTCCACTACCAACTCCACTAGCCACACTTG
Found at i:1012834 original size:18 final size:17
Alignment explanation
Indices: 1012811--1012870 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 17
1012801 CCACCACCAA
1012811 CTCCACTAGCCACACTTG
1 CTCCACTA-CCACACTTG
*
1012829 CTCCACT---AC-C-TA
1 CTCCACTACCACACTTG
1012841 CTCCACTAGCCACACTTG
1 CTCCACTA-CCACACTTG
1012859 CTCCACTACCAC
1 CTCCACTACCAC
1012871 TTGTACCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
12 8 0.24
13 1 0.03
14 2 0.06
16 2 0.06
17 5 0.15
18 16 0.47
ACGTcount: A:0.23, C:0.48, G:0.07, T:0.22
Consensus pattern (17 bp):
CTCCACTACCACACTTG
Found at i:1016112 original size:30 final size:30
Alignment explanation
Indices: 1016076--1016139 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
1016066 ACAAGTGGCA
1016076 GTGGAGCAAGTGTAGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTAGCTAGTGGAGTTGGTG
* *
1016106 GTGGAGCAATTGTGGCTAGTGGAGTTGGTG
1 GTGGAGCAAGTGTAGCTAGTGGAGTTGGTG
1016136 GTGG
1 GTGG
1016140 CAAATGCTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.17, C:0.06, G:0.48, T:0.28
Consensus pattern (30 bp):
GTGGAGCAAGTGTAGCTAGTGGAGTTGGTG
Found at i:1019829 original size:24 final size:24
Alignment explanation
Indices: 1019802--1019855 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
1019792 TTTAAATACT
1019802 AAAT-TAAACATTAAAAATAAACTC
1 AAATATAAA-ATTAAAAATAAACTC
* *
1019826 AAATATCAAATTAAAAATAAATTC
1 AAATATAAAATTAAAAATAAACTC
1019850 AAATAT
1 AAATAT
1019856 TAATCGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATATAAAATTAAAAATAAACTC
Found at i:1040527 original size:16 final size:18
Alignment explanation
Indices: 1040491--1040530 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
1040481 GATTTATCAC
*
1040491 TATTTTATTTGACATTAT
1 TATTTTATTTGACAGTAT
1040509 TATTTTATTT-A-AGTAT
1 TATTTTATTTGACAGTAT
1040525 TATTTT
1 TATTTT
1040531 TTTCTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.48
17 1 0.05
18 10 0.48
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TATTTTATTTGACAGTAT
Found at i:1042266 original size:19 final size:19
Alignment explanation
Indices: 1042242--1042283 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
1042232 TAAGGACAAG
1042242 TTTTAAAGTTATATAT-TAA
1 TTTTAAAGTTA-ATATGTAA
*
1042261 TTTT-AATTTAATATGTAA
1 TTTTAAAGTTAATATGTAA
1042279 TTTTA
1 TTTTA
1042284 TACCAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.20
18 12 0.60
19 4 0.20
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTTAAAGTTAATATGTAA
Found at i:1042423 original size:152 final size:155
Alignment explanation
Indices: 1042129--1042437 Score: 410
Period size: 152 Copynumber: 2.0 Consensus size: 155
1042119 AACCCATGAC
* * * **
1042129 ACCAATTAAATTAGGAGTTTTATTAATAGTATAGATATTTTGATAGAAATTAACTTCTCACTTTG
1 ACCAATTAAATCAGGAGTTCTATTAATAGTATAGATATTTTAATAGAAA-TAACTTCTCACTTCA
* * * *
1042194 ATTTAAAACTTTTATAAAATAATACATTTTTTAATACTTAAGGACAAGTTTTAAAGTTATATATT
65 ATTTAAAACTTTTATAAAATAATACATTTTTTAATACTTAAAGACAAGTTTTAAAATTATACATA
1042259 AATTTTAATTTAATATGTAATTTTAT
130 AATTTTAATTTAATATGTAATTTTAT
* * * *
1042285 ACCAATTCAATCATGAGTTCTATTAATAGTATAGATATTTTAATA-AAA-AATTTCTGA-TGTCA
1 ACCAATTAAATCAGGAGTTCTATTAATAGTATAGATATTTTAATAGAAATAACTTCTCACT-TCA
* ** * *
1042347 ATTTAGAACTTTTATAAAATAATACA-TTTTTAATTTTTAAAGATAATTTTTAAAATTATACATA
65 ATTTAAAACTTTTATAAAATAATACATTTTTTAATACTTAAAGACAAGTTTTAAAATTATACATA
1042411 AATTTTAATTTAATATGTAATTTTAT
130 AATTTTAATTTAATATGTAATTTTAT
1042437 A
1 A
1042438 TACCAACTCG
Statistics
Matches: 134, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
152 58 0.43
153 33 0.25
155 3 0.02
156 40 0.30
ACGTcount: A:0.41, C:0.06, G:0.07, T:0.45
Consensus pattern (155 bp):
ACCAATTAAATCAGGAGTTCTATTAATAGTATAGATATTTTAATAGAAATAACTTCTCACTTCAA
TTTAAAACTTTTATAAAATAATACATTTTTTAATACTTAAAGACAAGTTTTAAAATTATACATAA
ATTTTAATTTAATATGTAATTTTAT
Found at i:1042554 original size:156 final size:152
Alignment explanation
Indices: 1042149--1042572 Score: 392
Period size: 156 Copynumber: 2.7 Consensus size: 152
1042139 TTAGGAGTTT
* * * * *
1042149 TATTAATAGTATAGATATTTTGATAGAAATTAACTTCTCACTTTGATTTAAAACTTTTATAAAAT
1 TATTAATAGTATAGATA-TTTCA-ACAAA-AAATTTCTCACTTTGATTTAGAACTTTTATAAAAT
* * * * * *
1042214 AATACATTTTTTAATACTTAAGGACAAGTTTTAAAGTTATATATTAATTTTAATTTAATATGTAA
63 AATACATTTTTTAATATTTAA-AATAAGTTTTAAAATTATACATAAATTTTAATTTAATATGTAA
* * *
1042279 TTTTATACCAATTCAATCATGAGTTC
127 TTTTATACCAACTCAATAATGAATTC
* * * **
1042305 TATTAATAGTATAGATATTTTAATAAAAAATTTCTGA-TGTCAATTTAGAACTTTTATAAAATAA
1 TATTAATAGTATAGATATTTCAACAAAAAATTTCTCACT-TTGATTTAGAACTTTTATAAAATAA
* *
1042369 TACA-TTTTTAATTTTTAAAGATAATTTTTAAAATTATACATAAATTTTAATTTAATATGTAATT
65 TACATTTTTTAATATTTAAA-ATAAGTTTTAAAATTATACATAAATTTTAATTTAATATGTAA-T
** *
1042433 TTATATACCAACTCGGTTAAT-AATTT
128 TT-TATACCAACTC-AATAATGAATTC
* * * *
1042459 TATT-ATAGTATAGATATTTCAACAAGAGTTAGTTTCTCACTTTGATTTAGAATTTTTACAAAAT
1 TATTAATAGTATAGATATTTCAACAA-A--AAATTTCTCACTTTGATTTAGAACTTTTATAAAAT
* * * *
1042523 -ATGCATTTTTTAATGTTTAACAATGAA-TTTTAAAATTTTACATGAATTTT
63 AATACATTTTTTAATATTTAA-AAT-AAGTTTTAAAATTATACATAAATTTT
1042573 TTATTTATTT
Statistics
Matches: 221, Mismatches: 35, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
152 50 0.23
153 55 0.25
154 22 0.10
155 11 0.05
156 79 0.36
157 4 0.02
ACGTcount: A:0.39, C:0.07, G:0.08, T:0.46
Consensus pattern (152 bp):
TATTAATAGTATAGATATTTCAACAAAAAATTTCTCACTTTGATTTAGAACTTTTATAAAATAAT
ACATTTTTTAATATTTAAAATAAGTTTTAAAATTATACATAAATTTTAATTTAATATGTAATTTT
ATACCAACTCAATAATGAATTC
Found at i:1044725 original size:16 final size:16
Alignment explanation
Indices: 1044692--1044725 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1044682 CTTGGCTGTT
* *
1044692 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
1044708 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
1044724 AA
1 AA
1044726 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:1047551 original size:21 final size:21
Alignment explanation
Indices: 1047525--1047565 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1047515 AGACGAGCAA
* *
1047525 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
1047546 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
1047566 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:1049504 original size:16 final size:16
Alignment explanation
Indices: 1049471--1049504 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1049461 GGAGATTGTT
* *
1049471 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
1049487 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
1049503 AA
1 AA
1049505 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:1055149 original size:23 final size:23
Alignment explanation
Indices: 1055119--1055164 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
1055109 CCTGGTGGGT
1055119 TCTTTGTTTTGTGTGCAGAGTTA
1 TCTTTGTTTTGTGTGCAGAGTTA
1055142 TCTTTGTTTTGTGTGCAGAGTTA
1 TCTTTGTTTTGTGTGCAGAGTTA
1055165 GGGATTGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.09, G:0.26, T:0.52
Consensus pattern (23 bp):
TCTTTGTTTTGTGTGCAGAGTTA
Found at i:1056770 original size:25 final size:25
Alignment explanation
Indices: 1056739--1056788 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1056729 GATGTCCAGG
1056739 TTAGTCTATCAAGTCAAATTCATAT
1 TTAGTCTATCAAGTCAAATTCATAT
1056764 TTAGTCTATCAAGTCAAATTCATAT
1 TTAGTCTATCAAGTCAAATTCATAT
1056789 CACAAGTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (25 bp):
TTAGTCTATCAAGTCAAATTCATAT
Found at i:1062319 original size:29 final size:30
Alignment explanation
Indices: 1062260--1062317 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1062250 TCCGAGCCTT
*
1062260 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
1062290 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
1062318 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:1062547 original size:13 final size:13
Alignment explanation
Indices: 1062529--1062560 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
1062519 TTTCCAGCAA
1062529 TTATGAATTTATT
1 TTATGAATTTATT
1062542 TTATGAATTTATT
1 TTATGAATTTATT
*
1062555 TGATGA
1 TTATGA
1062561 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:1062775 original size:50 final size:50
Alignment explanation
Indices: 1062655--1062896 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
1062645 ATTTGGGTAA
* * *
1062655 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
1062711 AGAAGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1062761 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
1062811 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
1062861 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
1062897 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.55
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:1062845 original size:100 final size:103
Alignment explanation
Indices: 1062655--1062904 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
1062645 ATTTGGGTAA
1062655 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAAGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAAGTCCC
* *
1062720 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * * *
1062761 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
1062823 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
1062861 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
1062905 GTTATTATCA
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.30
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAAGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:1063717 original size:36 final size:36
Alignment explanation
Indices: 1063670--1063742 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
1063660 AATAACGGTG
1063670 TAGAAAAAGGAAATTTATATTTTAAGATATGTGAAT
1 TAGAAAAAGGAAATTTATATTTTAAGATATGTGAAT
1063706 TAGAAAAAGGAAATTTATATTTTAAGATATGTGAAT
1 TAGAAAAAGGAAATTTATATTTTAAGATATGTGAAT
1063742 T
1 T
1063743 TTAGTAAGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (36 bp):
TAGAAAAAGGAAATTTATATTTTAAGATATGTGAAT
Found at i:1065733 original size:56 final size:56
Alignment explanation
Indices: 1065661--1065783 Score: 239
Period size: 56 Copynumber: 2.2 Consensus size: 56
1065651 AATTATTTTC
1065661 AATAT-ATAAAGATGATATATATTTTACATATATTAATAATTTAAATTTATATAAA
1 AATATCATAAAGATGATATATATTTTACATATATTAATAATTTAAATTTATATAAA
1065716 AATATCATAAAGATGATATATATTTTACATATATTAATAATTTAAATTTATATAAA
1 AATATCATAAAGATGATATATATTTTACATATATTAATAATTTAAATTTATATAAA
1065772 AATATCATAAAG
1 AATATCATAAAG
1065784 GCTTGTTTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
55 5 0.07
56 62 0.93
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (56 bp):
AATATCATAAAGATGATATATATTTTACATATATTAATAATTTAAATTTATATAAA
Found at i:1066041 original size:19 final size:20
Alignment explanation
Indices: 1066003--1066041 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
1065993 CTATTTGTTA
* *
1066003 AAAATTAATTAATTATATAT
1 AAAATTAATTAATAAAATAT
1066023 AAAA-TAATTAATAAAATAT
1 AAAATTAATTAATAAAATAT
1066042 TTTCTAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAATTAATTAATAAAATAT
Found at i:1070673 original size:8 final size:8
Alignment explanation
Indices: 1070662--1070710 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
1070652 ATTATAAAAT
1070662 ATTATTAA
1 ATTATTAA
1070670 ATTATTAA
1 ATTATTAA
*
1070678 A--A-AAA
1 ATTATTAA
1070683 ATTATTTAA
1 ATTA-TTAA
*
1070692 GTTATTAA
1 ATTATTAA
1070700 ATTATTAA
1 ATTATTAA
1070708 ATT
1 ATT
1070711 CTTTTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
5 3 0.09
6 1 0.03
7 1 0.03
8 23 0.70
9 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (8 bp):
ATTATTAA
Found at i:1070681 original size:21 final size:22
Alignment explanation
Indices: 1070652--1070700 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
1070642 AATTTTAAAA
* *
1070652 ATTATAAAATATTA-TTAAATT
1 ATTAAAAAAAATTATTTAAATT
*
1070673 ATTAAAAAAAATTATTTAAGTT
1 ATTAAAAAAAATTATTTAAATT
1070695 ATTAAA
1 ATTAAA
1070701 TTATTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATTAAAAAAAATTATTTAAATT
Found at i:1071263 original size:20 final size:20
Alignment explanation
Indices: 1071235--1071280 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
1071225 TTCCATACAG
*
1071235 CCAAGACCTAACTCTTGGGA
1 CCAAAACCTAACTCTTGGGA
1071255 CCAAAACCTAACTCTTGGGA
1 CCAAAACCTAACTCTTGGGA
1071275 CCAAAA
1 CCAAAA
1071281 AACCAGCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.15, T:0.17
Consensus pattern (20 bp):
CCAAAACCTAACTCTTGGGA
Found at i:1076676 original size:11 final size:11
Alignment explanation
Indices: 1076660--1076684 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1076650 AACATCTCTA
1076660 AATAATTTAAT
1 AATAATTTAAT
1076671 AATAATTTAAT
1 AATAATTTAAT
1076682 AAT
1 AAT
1076685 TTTATAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATAATTTAAT
Found at i:1079290 original size:46 final size:47
Alignment explanation
Indices: 1079220--1079488 Score: 348
Period size: 46 Copynumber: 5.8 Consensus size: 47
1079210 TTCGACATGA
* * * * *
1079220 TGCCATTGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* * ** * **
1079266 TGTCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
*
1079313 TGTCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* *
1079359 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
* * *
1079405 TGCCATGGTATCTTTCAACCATGGTCTTACAC-GTTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
1079451 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC
1079489 TATCAGAGAG
Statistics
Matches: 201, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
46 161 0.80
47 40 0.20
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATGTCACGT
Found at i:1086385 original size:46 final size:46
Alignment explanation
Indices: 1086333--1086560 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
1086323 AATGTGCTCT
1086333 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
1086379 CTGATATGAAATGTGTAAGACCATGGTTGATAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
1086425 TTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
1086471 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
1086517 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
1086561 TCACGTCAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 164 0.99
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:1086865 original size:23 final size:24
Alignment explanation
Indices: 1086821--1086866 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
1086811 AATAAATATA
*
1086821 CATAAATATATGGAAATGATGAAG
1 CATAAATATATGGAAATAATGAAG
* *
1086845 CATAAA-ATATTGATATAATGAA
1 CATAAATATATGGAAATAATGAA
1086867 ATGAATGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.52, C:0.04, G:0.15, T:0.28
Consensus pattern (24 bp):
CATAAATATATGGAAATAATGAAG
Found at i:1087520 original size:24 final size:27
Alignment explanation
Indices: 1087468--1087527 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
1087458 ACATATAACC
*
1087468 TCAATTCAATCATAATTTCTCACGTTT
1 TCAATTCAATCATAATTTCTCACGCTT
*
1087495 TCAATTCAATCAT-TTTTC-CAC-CTT
1 TCAATTCAATCATAATTTCTCACGCTT
1087519 TCAA-TCAAT
1 TCAATTCAAT
1087528 ATTCAATCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 5 0.16
24 6 0.19
25 3 0.10
26 4 0.13
27 13 0.42
ACGTcount: A:0.30, C:0.25, G:0.02, T:0.43
Consensus pattern (27 bp):
TCAATTCAATCATAATTTCTCACGCTT
Found at i:1087584 original size:20 final size:18
Alignment explanation
Indices: 1087547--1087585 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1087537 ATATATTCTC
*
1087547 ACATTTTCACAATTCAAT
1 ACATTTTCACAATCCAAT
1087565 ACATTTTCATTCAATCCAAT
1 ACATTTTCA--CAATCCAAT
1087585 A
1 A
1087586 TCAATACTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (18 bp):
ACATTTTCACAATCCAAT
Found at i:1088066 original size:5 final size:5
Alignment explanation
Indices: 1088050--1088122 Score: 53
Period size: 5 Copynumber: 14.8 Consensus size: 5
1088040 TTCTTTTGTT
* * *
1088050 ATATA A-ATA ATAT- A-ATA ATTTA ATATA ATGTA ATATTG ATATA ATAATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA-TA ATATA AT-ATA
* * *
1088099 AAATA ATATA TTATA ATAAA ATAT
1 ATATA ATATA ATATA ATATA ATAT
1088123 TAACTAAAAA
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
3 2 0.04
4 6 0.12
5 35 0.69
6 8 0.16
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:1088114 original size:18 final size:18
Alignment explanation
Indices: 1088056--1088121 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
1088046 TGTTATATAA
* * *
1088056 ATAATATAATAATTTAAT
1 ATAATAAAATAATATATT
** * *
1088074 ATAATGTAATATTGATATA
1 ATAATAAAATAAT-ATATT
1088093 ATAATAAAATAATATATT
1 ATAATAAAATAATATATT
1088111 ATAATAAAATA
1 ATAATAAAATA
1088122 TTAACTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 26 0.68
19 12 0.32
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (18 bp):
ATAATAAAATAATATATT
Found at i:1088122 original size:37 final size:38
Alignment explanation
Indices: 1088050--1088123 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 38
1088040 TTCTTTTGTT
* * **
1088050 ATATAAATAATATAATAATTTAATATAATGTAATATTG
1 ATATAAATAATAAAATAATATAATATAATAAAATATTG
*
1088088 ATAT-AATAATAAAATAATATATTATAATAAAATATT
1 ATATAAATAATAAAATAATATAATATAATAAAATATT
1088124 AACTAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 27 0.87
38 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (38 bp):
ATATAAATAATAAAATAATATAATATAATAAAATATTG
Found at i:1091132 original size:26 final size:26
Alignment explanation
Indices: 1091103--1091162 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
1091093 TCCCTTTGAA
* * *
1091103 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
1091129 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
1091157 CCATTC
1 TCATTC
1091163 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:1091148 original size:28 final size:28
Alignment explanation
Indices: 1091117--1091188 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
1091107 TCGATATTTT
*
1091117 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
1091145 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
1091173 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
1091189 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:1096039 original size:47 final size:47
Alignment explanation
Indices: 1095930--1096040 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
1095920 CCGGGATAAG
*
1095930 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
1095977 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
1096024 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
1096041 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:1096863 original size:42 final size:43
Alignment explanation
Indices: 1096767--1096863 Score: 146
Period size: 42 Copynumber: 2.3 Consensus size: 43
1096757 TTTATTTCTT
* * *
1096767 TCTTTCT-TTCCTTCTTTCTTTCTCACGTTTGCTCTCTGTTAG
1 TCTTTCTATTCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
1096809 TCTTTCTA-TCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
1 TCTTTCTATTCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
1096851 T-TTTCTATTCTTT
1 TCTTTCTATTCTTT
1096864 ACTTATTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
41 6 0.12
42 44 0.88
ACGTcount: A:0.07, C:0.27, G:0.07, T:0.59
Consensus pattern (43 bp):
TCTTTCTATTCTTTCTTTCTTTCTCACGTTTGCTCTCTGTAAC
Found at i:1100561 original size:20 final size:20
Alignment explanation
Indices: 1100524--1100561 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1100514 TGATGGGGAG
*
1100524 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
1100544 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
1100562 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:1102512 original size:46 final size:46
Alignment explanation
Indices: 1102460--1102687 Score: 332
Period size: 46 Copynumber: 5.0 Consensus size: 46
1102450 AGTATGCTCT
*
1102460 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1102506 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
1102552 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
1102598 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
1102644 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
1102688 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 166 0.99
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:1110354 original size:22 final size:24
Alignment explanation
Indices: 1110329--1110374 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
1110319 AATATATGTA
1110329 AATAATTAGGAT-AAA-AATATAT
1 AATAATTAGGATGAAATAATATAT
* *
1110351 AATATTTAGGTTGAAATAATATAT
1 AATAATTAGGATGAAATAATATAT
1110375 TCTTTCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 3 0.15
24 7 0.35
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (24 bp):
AATAATTAGGATGAAATAATATAT
Found at i:1113150 original size:23 final size:23
Alignment explanation
Indices: 1113124--1113167 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
1113114 CTTTGAGCAG
1113124 CAAAAGATTGTAATATATGGACT
1 CAAAAGATTGTAATATATGGACT
1113147 CAAAAGATTGTAATATATGGA
1 CAAAAGATTGTAATATATGGA
1113168 AGGATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.18, T:0.30
Consensus pattern (23 bp):
CAAAAGATTGTAATATATGGACT
Found at i:1114562 original size:19 final size:19
Alignment explanation
Indices: 1114538--1114577 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1114528 GTTATCGTAT
*
1114538 TATTGATTATTA-AAATAAA
1 TATTGA-TATTAGAAAAAAA
1114557 TATTGATATTAGAAAAAAA
1 TATTGATATTAGAAAAAAA
1114576 TA
1 TA
1114578 AAAAGAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (19 bp):
TATTGATATTAGAAAAAAA
Found at i:1118198 original size:44 final size:45
Alignment explanation
Indices: 1118145--1118246 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 45
1118135 TGTCTTTGAC
* * *
1118145 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
1118189 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
1118235 ATGGACTTACAT
1 ATGGACTTACAT
1118247 AGCTCATTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 33 0.66
46 17 0.34
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:1118252 original size:46 final size:44
Alignment explanation
Indices: 1118164--1118252 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
1118154 CATGAATTAT
* *
1118164 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATAGCTCAA
*
1118208 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATAGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATAGCTCA
1118253 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATAGCTCAA
Found at i:1119864 original size:21 final size:22
Alignment explanation
Indices: 1119838--1119882 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
1119828 TCAATGTTCA
1119838 AATAATA-A-CTATCTCCGGTTT
1 AATAATAGAGCTATC-CCGGTTT
*
1119859 AATAATAGAGCTCTCCCGGTTT
1 AATAATAGAGCTATCCCGGTTT
1119881 AA
1 AA
1119883 AAAAAGTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 10 0.48
23 4 0.19
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (22 bp):
AATAATAGAGCTATCCCGGTTT
Found at i:1120237 original size:12 final size:12
Alignment explanation
Indices: 1120213--1120246 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1120203 TTTATTCGAT
*
1120213 AAAAAATAATTA
1 AAAAAACAATTA
*
1120225 AAACAACAATTA
1 AAAAAACAATTA
1120237 AAAAAACAAT
1 AAAAAACAAT
1120247 AACAATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.18
Consensus pattern (12 bp):
AAAAAACAATTA
Found at i:1123235 original size:21 final size:21
Alignment explanation
Indices: 1123209--1123249 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1123199 ATCTGCTCAA
* *
1123209 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
1123230 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
1123250 TTGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:1127025 original size:454 final size:454
Alignment explanation
Indices: 1126178--1127083 Score: 1758
Period size: 454 Copynumber: 2.0 Consensus size: 454
1126168 TATTGCGCAG
1126178 CTTTGATCAGGCACATGATACCCCAGCGCTCTTATTAAAACTTTGACGTCAACTTTACCTTGTGG
1 CTTTGATCAGGCACATGATACCCCAGCGCTCTTATTAAAACTTTGACGTCAACTTTACCTTGTGG
1126243 TCTACCGGAAGGTCGCTTCAACTTGAGTGATTTCTCGTATTCCCCATAGCGGCCGCTGTCTTTTA
66 TCTACCGGAAGGTCGCTTCAACTTGAGTGATTTCTCGTATTCCCCATAGCGGCCGCTGTCTTTTA
1126308 AGACATCTCGGAGATTCAGTTTAGCTGAGCCGATAAGAGGCTTGGTCTTCTCCTCGTTGCCGACA
131 AGACATCTCGGAGATTCAGTTTAGCTGAGCCGATAAGAGGCTTGGTCTTCTCCTCGTTGCCGACA
*
1126373 TGGATGACATCGACGTAAAGGTTAGTGTCGGCATTGATGGGACAAAGAAGAGGGATGACTAGGGT
196 TGGATGACATCGACGTAAAGGTTAGTGTCGGCATTGATGGGACAAAAAAGAGGGATGACTAGGGT
1126438 CGAGTTCCATGTGGGATATGTGTCGCCTTTTTCGTCGACTGTAGTGGCCAATTTGCTGTTCGGGT
261 CGAGTTCCATGTGGGATATGTGTCGCCTTTTTCGTCGACTGTAGTGGCCAATTTGCTGTTCGGGT
*
1126503 CCACCCACACGACGGCGTACGGCTTGATCGGACCGTGTCGCCAGTTCACGTTTTGAAGATCTTTG
326 CCACCCACACGACGGCGTACGGCTTGATCGGACCGTATCGCCAGTTCACGTTTTGAAGATCTTTG
*
1126568 CCGGAGACGAAAGTTACCTGTATTTCTTGAGGAGCGGCCATTTTGTATTCCTTTGGTGATATTC
391 CCGGAGACGAAAGTTACCTGTATTTCTCGAGGAGCGGCCATTTTGTATTCCTTTGGTGATATTC
1126632 CTTTGATCAGGCACATGATACCCCAGCGCTCTTATTAAAACTTTGACGTCAACTTTACCTTGTGG
1 CTTTGATCAGGCACATGATACCCCAGCGCTCTTATTAAAACTTTGACGTCAACTTTACCTTGTGG
*
1126697 TCTACCGGACGGTCGCTTCAACTTGAGTGATTTCTCGTATTCCCCATAGCGGCCGCTGTCTTTTA
66 TCTACCGGAAGGTCGCTTCAACTTGAGTGATTTCTCGTATTCCCCATAGCGGCCGCTGTCTTTTA
*
1126762 AGACATCTCGGAGATTCAGTTTAGCTGAGCCGATAAGAGGCTTGGTCTTCTCCTCGTTGCCGGCA
131 AGACATCTCGGAGATTCAGTTTAGCTGAGCCGATAAGAGGCTTGGTCTTCTCCTCGTTGCCGACA
*
1126827 TGGATGACATCGACGTAAAGGTTAGTGTCGTCATTGATGGGACAAAAAAGAGGGATGACTAGGGT
196 TGGATGACATCGACGTAAAGGTTAGTGTCGGCATTGATGGGACAAAAAAGAGGGATGACTAGGGT
1126892 CGAGTTCCATGTGGGATATGTGTCGCCTTTTTCGTCGACTGTAGTGGCCAATTTGCTGTTCGGGT
261 CGAGTTCCATGTGGGATATGTGTCGCCTTTTTCGTCGACTGTAGTGGCCAATTTGCTGTTCGGGT
1126957 CCACCCACACGACGGCGTACGGCTTGATCGGACCGTATCGCCAGTTCACGTTTTGAAGATCTTTG
326 CCACCCACACGACGGCGTACGGCTTGATCGGACCGTATCGCCAGTTCACGTTTTGAAGATCTTTG
1127022 CCGGAGACGAAAGTTACCTGTATTTCTCGAGGAGCGGCCATTTTGTATTCCTTTGGTGATAT
391 CCGGAGACGAAAGTTACCTGTATTTCTCGAGGAGCGGCCATTTTGTATTCCTTTGGTGATAT
1127084 GAAAAAATGA
Statistics
Matches: 446, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
454 446 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (454 bp):
CTTTGATCAGGCACATGATACCCCAGCGCTCTTATTAAAACTTTGACGTCAACTTTACCTTGTGG
TCTACCGGAAGGTCGCTTCAACTTGAGTGATTTCTCGTATTCCCCATAGCGGCCGCTGTCTTTTA
AGACATCTCGGAGATTCAGTTTAGCTGAGCCGATAAGAGGCTTGGTCTTCTCCTCGTTGCCGACA
TGGATGACATCGACGTAAAGGTTAGTGTCGGCATTGATGGGACAAAAAAGAGGGATGACTAGGGT
CGAGTTCCATGTGGGATATGTGTCGCCTTTTTCGTCGACTGTAGTGGCCAATTTGCTGTTCGGGT
CCACCCACACGACGGCGTACGGCTTGATCGGACCGTATCGCCAGTTCACGTTTTGAAGATCTTTG
CCGGAGACGAAAGTTACCTGTATTTCTCGAGGAGCGGCCATTTTGTATTCCTTTGGTGATATTC
Found at i:1127697 original size:20 final size:20
Alignment explanation
Indices: 1127668--1127708 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1127658 AATACAAGTT
*
1127668 AATTATTTGTATTCTAAAAA
1 AATTACTTGTATTCTAAAAA
*
1127688 AATTACTTGTATTTTAAAAA
1 AATTACTTGTATTCTAAAAA
1127708 A
1 A
1127709 GTTAGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
AATTACTTGTATTCTAAAAA
Found at i:1128304 original size:24 final size:24
Alignment explanation
Indices: 1128253--1128304 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
1128243 GCCTAAACTT
* * *
1128253 GGTGGAGGAGCCCCATATGCTGCT
1 GGTGGAGCAGCCCCATACGCTGCC
*
1128277 GGTGGAGCAGCCCCATACGGTGCC
1 GGTGGAGCAGCCCCATACGCTGCC
1128301 GGTG
1 GGTG
1128305 AAGGAGGTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.15, C:0.27, G:0.40, T:0.17
Consensus pattern (24 bp):
GGTGGAGCAGCCCCATACGCTGCC
Found at i:1129363 original size:22 final size:22
Alignment explanation
Indices: 1129321--1129366 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
1129311 GAGTTTTTTT
*
1129321 TAATTTTAAATTGTCACACAAA
1 TAATTTTAAAGTGTCACACAAA
*
1129343 TAATTTTAATAGTGTTA-ACAAA
1 TAATTTTAA-AGTGTCACACAAA
1129365 TA
1 TA
1129367 TTAATTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (22 bp):
TAATTTTAAAGTGTCACACAAA
Found at i:1129583 original size:12 final size:12
Alignment explanation
Indices: 1129566--1129590 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1129556 GAAAAGCAAT
1129566 TGATTAATGCTA
1 TGATTAATGCTA
1129578 TGATTAATGCTA
1 TGATTAATGCTA
1129590 T
1 T
1129591 ATTGCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TGATTAATGCTA
Found at i:1129660 original size:14 final size:15
Alignment explanation
Indices: 1129625--1129661 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
1129615 AGTATGTAGT
1129625 TTAAAA-TAATTACA
1 TTAAAATTAATTACA
*
1129639 TTACAATTAATTA-A
1 TTAAAATTAATTACA
1129653 TTAAAATTA
1 TTAAAATTA
1129662 TGTAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAATTAATTACA
Found at i:1132443 original size:32 final size:32
Alignment explanation
Indices: 1132406--1132469 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
1132396 GTTGCTTGCC
*
1132406 TGCATTGCTTTTGGTTGATTTGCTTTCCTATT
1 TGCATTGCTTTTGGTTGATTTGCCTTCCTATT
* * *
1132438 TGCATTGGTTTTGGTTGTTTTTCCTTCCTATT
1 TGCATTGCTTTTGGTTGATTTGCCTTCCTATT
1132470 GTATTCATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.08, C:0.16, G:0.19, T:0.58
Consensus pattern (32 bp):
TGCATTGCTTTTGGTTGATTTGCCTTCCTATT
Found at i:1132808 original size:218 final size:219
Alignment explanation
Indices: 1132419--1132848 Score: 727
Period size: 218 Copynumber: 2.0 Consensus size: 219
1132409 ATTGCTTTTG
* * * * *
1132419 GTTGATTTGCTTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCTTCCTATTGTATTCATATGATG
1 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
*
1132484 AACTCTACTCGGATTCCCCTTCAAGACTTCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
66 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
* * *
1132549 TTAAGTGATCAATTTTACATAGTTCACAAATTTGATTTGTATTAAAGTAT-GAAAAATGTGTTTC
131 TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC
1132613 TTCATTCTTTCTTCAATTCAGTTT
196 TTCATTCTTTCTTCAATTCAGTTT
1132637 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
1 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
* *
1132702 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTTGAGTTTCTGATGCAAGCA
66 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
* * *
1132767 TTAAGTGATCAATTTTACATAGTTCACAACTTCGGTTTGTATGGAAGTATAAAAAAATGTGTTTC
131 TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC
1132832 TTCATTCTTTCTTCAAT
196 TTCATTCTTTCTTCAAT
1132849 ACTCTAATAA
Statistics
Matches: 197, Mismatches: 14, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
218 167 0.85
219 30 0.15
ACGTcount: A:0.24, C:0.17, G:0.16, T:0.42
Consensus pattern (219 bp):
GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC
TTCATTCTTTCTTCAATTCAGTTT
Found at i:1132981 original size:222 final size:216
Alignment explanation
Indices: 1132430--1132983 Score: 558
Period size: 218 Copynumber: 2.5 Consensus size: 216
1132420 TTGATTTGCT
* * * * ** * * *
1132430 TTCCTATTTGCATTGGTTTTGGTTGTTTTTCCTTCCTATTGTATTCATATGATGAACTCTACTCG
1 TTCCTATGTGCATTGGTTTTGCTTGTTTTTACAT-CTATCATATGCAAACGATGAAC-CTACTCG
*
1132495 GATTCCCCTTCAAGACTTCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACATTAAGTGATCA
64 GATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACATTAAGTGATCA
* * *
1132560 ATTTTACATAGTTCACAAATTTGATTTGTATTAAAGTATGAAAAATGTGTTTCTTCATTCTTTCT
129 ATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAATGTGTTTCTTCATTCTTTCT
* * * *** ** *
1132625 TCAATTCAGTTTGTTGATTTGCC
194 TCAATACACTATAAAGATACGAC
* * * * * *
1132648 TTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATGAACTCTACTCG
1 TTCCTATGTGCATTGGTTTTGCTTGTTTTTACAT-CTATCATATGCAAACGATGAAC-CTACTCG
* *
1132713 GATTCCCCTTCAAGACATCATGGGTGATGCTAACTTGAGTTTCTGATGCAAGCATTAAGTGATCA
64 GATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACATTAAGTGATCA
* * *
1132778 ATTTTACATAGTTCACAACTTCGGTTTGTATGGAAGTATAAAAAAATGTGTTTCTTCATTCTTTC
129 ATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTAT-AAAAAATGTGTTTCTTCATTCTTTC
* *
1132843 TTCAATACTCTAATAAAGAATACGAG
193 TTCAATACACT-ATAAAG-ATACGAC
* * ** * * *
1132869 TTTCTGATGTG-TTTTTTCTTTTCTTGTTTTAGTAACAT-TATCATTATGCAAATGATGAA-GTA
1 TTCCT-ATGTGCATTGGT-TTTGCTTGTTTT--T-ACATCTATCA-TATGCAAACGATGAACCTA
* *
1132931 CTCGGATTCCCCTTCAAGACATCACGGGTGATGCAATAC-CGAGTTTCTGATGC
60 CTCGGATTCCCCTTCAAGACATCATGGGTGATGCTA-ACTCGAGTTTCTGATGC
1132984 TTGACTTATC
Statistics
Matches: 286, Mismatches: 40, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
218 157 0.55
219 32 0.11
220 2 0.01
221 10 0.03
222 63 0.22
223 6 0.02
224 14 0.05
225 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (216 bp):
TTCCTATGTGCATTGGTTTTGCTTGTTTTTACATCTATCATATGCAAACGATGAACCTACTCGGA
TTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACATTAAGTGATCAAT
TTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAATGTGTTTCTTCATTCTTTCTTC
AATACACTATAAAGATACGAC
Found at i:1140107 original size:14 final size:14
Alignment explanation
Indices: 1140088--1140119 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1140078 ATTTATAATG
1140088 AAATTATTCTAAAA
1 AAATTATTCTAAAA
1140102 AAATTATTCTAAAA
1 AAATTATTCTAAAA
1140116 AAAT
1 AAAT
1140120 GAAAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (14 bp):
AAATTATTCTAAAA
Found at i:1145196 original size:23 final size:23
Alignment explanation
Indices: 1145152--1145217 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
1145142 TAAATATAAT
*
1145152 ATAATTTACAAATAATAAATTTTTA
1 ATAA-TTA-AAATAATAAATTTATA
**
1145177 ATAATTAAAATAATTTATTTATA
1 ATAATTAAAATAATAAATTTATA
*
1145200 ATAA-TATAAATCATAAAT
1 ATAATTA-AAATAATAAAT
1145218 ATTCAATGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 2 0.06
23 25 0.74
24 3 0.09
25 4 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAATTAAAATAATAAATTTATA
Found at i:1146609 original size:19 final size:19
Alignment explanation
Indices: 1146570--1146607 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
1146560 CAAATCTTAA
*
1146570 TAATAATAAGTTAAAATTT
1 TAATAATAAATTAAAATTT
1146589 TAAT-ATAAATTAAAATTT
1 TAATAATAAATTAAAATTT
1146607 T
1 T
1146608 TATTCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TAATAATAAATTAAAATTT
Found at i:1152633 original size:23 final size:23
Alignment explanation
Indices: 1152602--1152659 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
1152592 ATAAAATGAT
*
1152602 ATATTATTTATGTAAAAAAATATA
1 ATATAATTTATGTAAAAAAATA-A
* *
1152626 A-ATAATTTTATTTAAAATAATAA
1 ATATAA-TTTATGTAAAAAAATAA
1152649 ATATAATTTAT
1 ATATAATTTAT
1152660 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
ATATAATTTATGTAAAAAAATAA
Found at i:1152635 original size:24 final size:24
Alignment explanation
Indices: 1152608--1152657 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1152598 TGATATATTA
1152608 TTTATGTAAAAAAATATAA-ATAAT
1 TTTATGTAAAAAAATA-AATATAAT
* *
1152632 TTTATTTAAAATAATAAATATAAT
1 TTTATGTAAAAAAATAAATATAAT
1152656 TT
1 TT
1152658 ATATTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TTTATGTAAAAAAATAAATATAAT
Found at i:1152667 original size:28 final size:30
Alignment explanation
Indices: 1152614--1152679 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 30
1152604 ATTATTTATG
*
1152614 TAAAAAAATATAAATAATTTTATTTAAA-A
1 TAAATAAATATAAATAATTTTATTTAAACA
* *
1152643 T-AATAAATATAATTTATATTT-TTTAAACA
1 TAAATAAATATAAATAAT-TTTATTTAAACA
1152672 TAAATAAA
1 TAAATAAA
1152680 CACAAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 19 0.61
29 6 0.19
30 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (30 bp):
TAAATAAATATAAATAATTTTATTTAAACA
Found at i:1159345 original size:31 final size:30
Alignment explanation
Indices: 1159306--1159363 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
1159296 GCATAAAAAA
*
1159306 GTTTAAACCTCAATATCAA-AATAATTGGCT
1 GTTTAAACCCCAATAT-AAGAATAATTGGCT
1159336 GTTTCAAACCCCAATATAAGAATAATTG
1 GTTT-AAACCCCAATATAAGAATAATTG
1159364 TCAAACCCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (30 bp):
GTTTAAACCCCAATATAAGAATAATTGGCT
Found at i:1176580 original size:12 final size:12
Alignment explanation
Indices: 1176563--1176590 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1176553 CTCCTTCTCC
1176563 TACTTCGGAGAT
1 TACTTCGGAGAT
1176575 TACTTCGGAGAT
1 TACTTCGGAGAT
1176587 TACT
1 TACT
1176591 CCTAATCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (12 bp):
TACTTCGGAGAT
Found at i:1178614 original size:22 final size:22
Alignment explanation
Indices: 1178586--1178630 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
1178576 AGGGGGAGTG
1178586 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
1178608 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
1178630 T
1 T
1178631 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:1194186 original size:241 final size:239
Alignment explanation
Indices: 1193735--1194425 Score: 1136
Period size: 241 Copynumber: 2.9 Consensus size: 239
1193725 TTTTTTTTGC
* * *
1193735 ACTTTTTTTAGTTATATACGATTTGAAAATGTTAGAAGCAATACGGTTAAGAACGTTGTTTGGTT
1 ACTTTTTTTAGTTATATACGATTAGAAAATGTTAGTAGCAATACGGTGAAGAACGTTGTTTGGTT
* *
1193800 GCCGAGGAAAACGTAAGGAGAAAAAAAAAATGAAGTGAATGAGTG--ATGTTTATGAACTCCATG
66 GCCGAGAAAAACGTAAGGAG-AAAAAAAAATGGAGTGAATGAGTGATATGTTTATGAACTCCATG
* * *
1193863 CAACTACTTCCCTGTTTTACTTGATGGCAAAGTTTTAGAGGATTTTGTTTTTATATTCCAATGGT
130 CAACTACCTCCCTGTTTTACTTGATGGCAAAGTTTTAGAGGATTTAGTTTTTAAATTCCAATGGT
1193928 GCAAACAGAGGACCGTAATGTCTATATGCAGTAATGATTTGTCTG
195 GCAAACAGAGGACCGTAATGTCTATATGCAGTAATGATTTGTCTG
*
1193973 ACTTGTTTTTGGTTATATACGATTAGAAAATGTTAGTAGCAATACGGTGAAGAACGTTGTTTGGT
1 ACTT-TTTTTAGTTATATACGATTAGAAAATGTTAGTAGCAATACGGTGAAGAACGTTGTTTGGT
1194038 TGCCGAGAAAAACGTAAGGAGAAAAGAAAAATGGAGTGAATGAGTGATATGTTTATGAACTCCAT
65 TGCCGAGAAAAACGTAAGGAGAAAA-AAAAATGGAGTGAATGAGTGATATGTTTATGAACTCCAT
* *
1194103 GCAACTACCTCCCTGTTTTACCTGATGGCAAGGTTTTAGAGGATTTAGTTTTTAAATTCCAATGG
129 GCAACTACCTCCCTGTTTTACTTGATGGCAAAGTTTTAGAGGATTTAGTTTTTAAATTCCAATGG
1194168 TGCAAACAGAGGACCGTAATGTCTATATGCAGTAATGATTTGTCTG
194 TGCAAACAGAGGACCGTAATGTCTATATGCAGTAATGATTTGTCTG
* *
1194214 ACTTTTTTCAGTTATATACGATTAGAAAATGTTAGTAGCAATACTGTGAAGAACGTTGTTTGGTT
1 ACTTTTTTTAGTTATATACGATTAGAAAATGTTAGTAGCAATACGGTGAAGAACGTTGTTTGGTT
*
1194279 GCCGAGAAAAACGTAAGGA-AAAAAAAAATGGAGTGAATAAGTGATATGTTTATGAACTCCATGC
66 GCCGAGAAAAACGTAAGGAGAAAAAAAAATGGAGTGAATGAGTGATATGTTTATGAACTCCATGC
* * * * *
1194343 AACTATCTCCCTATTTTACTTGATGGAAAAGTTTCAAGAGGATTTTCGTTTTTAAATTCCAATGG
131 AACTACCTCCCTGTTTTACTTGATGGCAAAGTTT-TAGAGGA-TTTAGTTTTTAAATTCCAATGG
*
1194408 TGCAAACAGCGGACCGTA
194 TGCAAACAGAGGACCGTA
1194426 GTAGTGAAAA
Statistics
Matches: 424, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
238 77 0.18
239 105 0.25
240 115 0.27
241 127 0.30
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (239 bp):
ACTTTTTTTAGTTATATACGATTAGAAAATGTTAGTAGCAATACGGTGAAGAACGTTGTTTGGTT
GCCGAGAAAAACGTAAGGAGAAAAAAAAATGGAGTGAATGAGTGATATGTTTATGAACTCCATGC
AACTACCTCCCTGTTTTACTTGATGGCAAAGTTTTAGAGGATTTAGTTTTTAAATTCCAATGGTG
CAAACAGAGGACCGTAATGTCTATATGCAGTAATGATTTGTCTG
Found at i:1195332 original size:72 final size:72
Alignment explanation
Indices: 1195215--1195398 Score: 359
Period size: 72 Copynumber: 2.6 Consensus size: 72
1195205 ACAACTTGAC
*
1195215 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1195280 ACTAACA
66 ACTAACA
1195287 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1195352 ACTAACA
66 ACTAACA
1195359 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1195399 AATAATAATA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 111 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.28
Consensus pattern (72 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
ACTAACA
Found at i:1195407 original size:3 final size:3
Alignment explanation
Indices: 1195399--1195439 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
1195389 ATTACATCCA
1195399 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1195440 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Done.