Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 300 of 356
Found at i:97803852 original size:14 final size:14
Alignment explanation
Indices: 97803783--97803853 Score: 52
Period size: 14 Copynumber: 4.8 Consensus size: 14
97803773 GTTTATGGTT
97803783 TATGGTTTAAGATA
1 TATGGTTTAAGATA
* * *
97803797 TATGGTTTAGGGTT
1 TATGGTTTAAGATA
* *
97803811 TAAGGTTTATGAGTTAA
1 TATGGTTTA--AGAT-A
*
97803828 CTATAGTTTAAGATA
1 -TATGGTTTAAGATA
97803843 TATGGTTTAAG
1 TATGGTTTAAG
97803854 GTTTAAGGTT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
14 29 0.69
15 1 0.02
16 5 0.12
18 7 0.17
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (14 bp):
TATGGTTTAAGATA
Found at i:97803932 original size:7 final size:7
Alignment explanation
Indices: 97803903--97804008 Score: 88
Period size: 7 Copynumber: 15.1 Consensus size: 7
97803893 GATGAATTAT
97803903 GGGTTTA
1 GGGTTTA
*
97803910 GGGATTA
1 GGGTTTA
* *
97803917 TGATTTA
1 GGGTTTA
97803924 GGGTTTA
1 GGGTTTA
*
97803931 GGGGTTA
1 GGGTTTA
97803938 GGG-TTA
1 GGGTTTA
*
97803944 GAGTTTA
1 GGGTTTA
* *
97803951 AGGTGTAA
1 GGGT-TTA
*
97803959 GGGTTTG
1 GGGTTTA
*
97803966 GGGTTAA
1 GGGTTTA
* *
97803973 TGGTTAA
1 GGGTTTA
97803980 GGGTTTA
1 GGGTTTA
*
97803987 GAGTTTA
1 GGGTTTA
97803994 GGGTTTA
1 GGGTTTA
97804001 GGGTTTA
1 GGGTTTA
97804008 G
1 G
97804009 TGGCATTTTT
Statistics
Matches: 76, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
6 5 0.07
7 66 0.87
8 5 0.07
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:97804303 original size:14 final size:14
Alignment explanation
Indices: 97804281--97804325 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
97804271 TTAATTATCA
97804281 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
97804295 TTATGGTTTAGGGT
1 TTATAGTTTAGGGT
*
97804309 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
97804323 TTA
1 TTA
97804326 AGGTGTAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:97804334 original size:14 final size:14
Alignment explanation
Indices: 97804286--97804334 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
97804276 TATCATTATA
*
97804286 GTTTAGGGTTTATG
1 GTTTAGGGTTTAAG
*
97804300 GTTTAGGGTATATA-
1 GTTTAGGGTTTA-AG
97804314 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
*
97804328 GTGTAGG
1 GTTTAGG
97804335 AATTACTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 1 0.03
14 28 0.97
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:97805937 original size:25 final size:25
Alignment explanation
Indices: 97805899--97805963 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
97805889 CTCATCGTTG
*
97805899 TTCGCCGTCATCTCTTCTGCGTCCC
1 TTCGCCGTCGTCTCTTCTGCGTCCC
97805924 TTCGCCGTCGTCTCTTCTGCGTCCC
1 TTCGCCGTCGTCTCTTCTGCGTCCC
97805949 TTCGCCGTCGCTCTC
1 TTCGCCGTCG-TCTC
97805964 CGCTTCCGCA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.02, C:0.45, G:0.18, T:0.35
Consensus pattern (25 bp):
TTCGCCGTCGTCTCTTCTGCGTCCC
Found at i:97809885 original size:21 final size:21
Alignment explanation
Indices: 97809859--97809929 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
97809849 TAACTCATAT
*
97809859 AACTTACGTAATTTACATAAC
1 AACTTACATAATTTACATAAC
97809880 AACTTACATAATTTACAT---
1 AACTTACATAATTTACATAAC
* **
97809898 AACTCACATAACGTACATAAC
1 AACTTACATAATTTACATAAC
97809919 AACTTACATAA
1 AACTTACATAA
97809930 CTTAACTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
18 15 0.36
21 27 0.64
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (21 bp):
AACTTACATAATTTACATAAC
Found at i:97809888 original size:39 final size:39
Alignment explanation
Indices: 97809843--97809931 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
97809833 AATTACATAT
* * * **
97809843 CTTACATAACTCATATAACTTACGTAATTTACATAACAA
1 CTTACATAACTCACATAACTCACATAACGTACATAACAA
* *
97809882 CTTACATAATTTACATAACTCACATAACGTACATAACAA
1 CTTACATAACTCACATAACTCACATAACGTACATAACAA
97809921 CTTACATAACT
1 CTTACATAACT
97809932 TAACTAATAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.31
Consensus pattern (39 bp):
CTTACATAACTCACATAACTCACATAACGTACATAACAA
Found at i:97809906 original size:9 final size:9
Alignment explanation
Indices: 97809830--97809933 Score: 73
Period size: 9 Copynumber: 10.9 Consensus size: 9
97809820 CATTACTTCA
*
97809830 ATAAATTAC
1 ATAACTTAC
*
97809839 ATATCTTAC
1 ATAACTTAC
* *
97809848 ATAACTCAT
1 ATAACTTAC
97809857 ATAACTTAC
1 ATAACTTAC
* *
97809866 GTAATTTAC
1 ATAACTTAC
97809875 ATAACAACTTAC
1 AT---AACTTAC
*
97809887 ATAATTTAC
1 ATAACTTAC
*
97809896 ATAACTCAC
1 ATAACTTAC
*
97809905 ATAACGTAC
1 ATAACTTAC
97809914 ATAACAACTTAC
1 AT---AACTTAC
97809926 ATAACTTA
1 ATAACTTA
97809934 ACTAATACAT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
9 56 0.78
12 16 0.22
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:97809930 original size:21 final size:20
Alignment explanation
Indices: 97809843--97809933 Score: 82
Period size: 21 Copynumber: 4.7 Consensus size: 20
97809833 AATTACATAT
*
97809843 CTTACATAAC-T-CATATAA
1 CTTACATAACTTACATACAA
* *
97809861 CTTACGTAATTTACATAACAA
1 CTTACATAACTTACAT-ACAA
*
97809882 CTTACATAATTTACAT--AA
1 CTTACATAACTTACATACAA
* *
97809900 CTCACATAACGTACATAACAA
1 CTTACATAACTTACAT-ACAA
97809921 CTTACATAACTTA
1 CTTACATAACTTA
97809934 ACTAATACAT
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
18 23 0.40
19 1 0.02
20 3 0.05
21 31 0.53
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (20 bp):
CTTACATAACTTACATACAA
Found at i:97815543 original size:21 final size:21
Alignment explanation
Indices: 97815518--97815558 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
97815508 TTAGAATGGA
*
97815518 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGAGAGAGAGGCAGC
*
97815539 GGCAGCAGCGAGAGAGGCAG
1 GGCAGCAGAGAGAGAGGCAG
97815559 AGGAACGAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.51, T:0.00
Consensus pattern (21 bp):
GGCAGCAGAGAGAGAGGCAGC
Found at i:97815865 original size:31 final size:31
Alignment explanation
Indices: 97815803--97815885 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
97815793 TTAGAATTAA
*
97815803 TGTTTTTGGTTGTATTTTTTATGTTAAATTTGC
1 TGTTTTTGGTTGTA--TTTTATATTAAATTTGC
* * *
97815836 TGTTTTTGGCTGTATTTTATATTATATTTGT
1 TGTTTTTGGTTGTATTTTATATTAAATTTGC
* *
97815867 TGTATTTGGTTGGATTTTA
1 TGTTTTTGGTTGTATTTTA
97815886 ATGCAGGAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 30 0.70
33 13 0.30
ACGTcount: A:0.16, C:0.02, G:0.19, T:0.63
Consensus pattern (31 bp):
TGTTTTTGGTTGTATTTTATATTAAATTTGC
Found at i:97816014 original size:43 final size:43
Alignment explanation
Indices: 97815963--97816216 Score: 391
Period size: 43 Copynumber: 5.9 Consensus size: 43
97815953 AAAAAAAGCA
* *
97815963 CCGCTAAAAGCCTTAATCTTTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
*
97816006 CCGCTAAAAGCCTTGACCTTTAGCGGTGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
* * * *
97816049 CCGCTAAAAGTCTTGACCTTTAGCGGCGCTTTCCCCAAAAAATG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCC-ACAAACG
* * *
97816093 CTGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCAAAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
97816136 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
*
97816179 CCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTTTCCCA
1 CCGCTAAAAGCCTTGACCTTTAGCGGCG-CTTTTCCCA
97816217 ATAAACGCTA
Statistics
Matches: 194, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
43 147 0.76
44 47 0.24
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (43 bp):
CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACG
Found at i:97816112 original size:87 final size:86
Alignment explanation
Indices: 97815963--97816224 Score: 389
Period size: 87 Copynumber: 3.0 Consensus size: 86
97815953 AAAAAAAGCA
* *
97815963 CCGCTAAAAGCCTTAATCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
* * *
97816028 GCGGTGCTTTTCCCACAAACG
66 GCGGCGCTTTCCCCAAAAACG
* * * * *
97816049 CCGCTAAAAGTCTTGACCTTTAGCGGCGCTTTCCCCAAAAAATGCTGCTAAAAGCCTTGACCTTT
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAAAAGCCTTGACCTTT
97816114 AGCGGCGCTTTCCCCAAAAACG
65 AGCGGCGCTTTCCCCAAAAACG
97816136 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
1 CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
* *
97816201 GCGGCGTTTTTTCCCAATAAACG
66 GCGGCG-CTTTCCCCAA-AAACG
97816224 C
1 C
97816225 TACAAACTTT
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
86 64 0.41
87 86 0.55
88 6 0.04
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (86 bp):
CCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTA
GCGGCGCTTTCCCCAAAAACG
Found at i:97816171 original size:130 final size:130
Alignment explanation
Indices: 97815965--97816206 Score: 430
Period size: 130 Copynumber: 1.9 Consensus size: 130
97815955 AAAAAGCACC
* * *
97815965 GCTAAAAGCCTTAATCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 GCTAAAAGCCTTAACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAGCCTTGACCTTTAGC
* *
97816030 GGTGCTTTTCCCACAAACGCCGCTAAAAGTCTTGACCTTTAGCGGCGCTTTCCCCAAAAAATGCT
66 GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCAAAAAATGCT
*
97816095 GCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAGCCTTGACCTTTAGC
1 GCTAAAAGCCTTAACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAGCCTTGACCTTTAGC
97816160 GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG
66 GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCG
97816207 TTTTTTCCCA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 106 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (130 bp):
GCTAAAAGCCTTAACCTTTAGCGGCGCTTTCCCCAAAAACGCCGCTAAAAGCCTTGACCTTTAGC
GGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTCCCCAAAAAATGCT
Found at i:97817551 original size:13 final size:13
Alignment explanation
Indices: 97817493--97817556 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
97817483 TTTAGCATTG
*
97817493 CTTTTGAGAAGTA
1 CTTTTGAAAAGTA
* *
97817506 CTTTTAAAAAGTG
1 CTTTTGAAAAGTA
* * *
97817519 CTGTGGAAAAATA
1 CTTTTGAAAAGTA
* *
97817532 ATTTTGAGAAGTA
1 CTTTTGAAAAGTA
97817545 CTTTTGAAAAGT
1 CTTTTGAAAAGT
97817557 TGGTTTAAAA
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:97820847 original size:57 final size:57
Alignment explanation
Indices: 97820784--97820900 Score: 198
Period size: 57 Copynumber: 2.1 Consensus size: 57
97820774 ACCATAAAAG
* * *
97820784 AAAGAAAAGAAGGTTCTGCTCTCTTCAAGAATAACGCATATTCGCATACTCTACCCC
1 AAAGAAAAGAAGGTTCTGCTCTATTCAAAAATAACGCATATTCGCATACTCCACCCC
*
97820841 AAAGAAAAGAAGGTTCTGCTCTATTCAAAAATAACGCATATTCGCATATTCCACCCC
1 AAAGAAAAGAAGGTTCTGCTCTATTCAAAAATAACGCATATTCGCATACTCCACCCC
97820898 AAA
1 AAA
97820901 TCATGTAGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (57 bp):
AAAGAAAAGAAGGTTCTGCTCTATTCAAAAATAACGCATATTCGCATACTCCACCCC
Found at i:97821369 original size:35 final size:36
Alignment explanation
Indices: 97821311--97821394 Score: 91
Period size: 35 Copynumber: 2.3 Consensus size: 36
97821301 TTTAAAACTT
*
97821311 TTTAAAATAT-AAAAAAATGAAAAAAATAAA-AACAC
1 TTTAAAAT-TCAAAAAAATGAAAAAAATAAACAAAAC
* * * *
97821346 TTTAAAATTCAAAAAATTTAAAAATATAAACAAAAG
1 TTTAAAATTCAAAAAAATGAAAAAAATAAACAAAAC
97821382 TTCTAAAATTCAA
1 TT-TAAAATTCAA
97821395 TCTTATCTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
34 1 0.02
35 25 0.61
36 5 0.12
37 10 0.24
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.26
Consensus pattern (36 bp):
TTTAAAATTCAAAAAAATGAAAAAAATAAACAAAAC
Found at i:97821708 original size:21 final size:22
Alignment explanation
Indices: 97821684--97821758 Score: 68
Period size: 21 Copynumber: 3.5 Consensus size: 22
97821674 AGAAAAAAAA
97821684 TTTATATTTTTAAAATTT-ATT
1 TTTATATTTTTAAAATTTAATT
* *
97821705 TTTAT-TTTTTGAATTTTAATT
1 TTTATATTTTTAAAATTTAATT
** *
97821726 TTTA-ATTTTTTTAATTGTAATA
1 TTTATATTTTTAAAATT-TAATT
97821748 TTT-TATTTTTA
1 TTTATATTTTTA
97821759 TTTAAAATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
20 10 0.23
21 20 0.47
22 13 0.30
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (22 bp):
TTTATATTTTTAAAATTTAATT
Found at i:97821733 original size:22 final size:21
Alignment explanation
Indices: 97821702--97821757 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
97821692 TTTAAAATTT
*
97821702 ATTTTTATTTTTTGAATTTTA
1 ATTTTTATTTTTTGAATTGTA
*
97821723 ATTTTTAATTTTTTTAATTGTA
1 ATTTTT-ATTTTTTGAATTGTA
97821745 ATATTTTATTTTT
1 AT-TTTTATTTTT
97821758 ATTTAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 21 0.68
23 4 0.13
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (21 bp):
ATTTTTATTTTTTGAATTGTA
Found at i:97822770 original size:11 final size:11
Alignment explanation
Indices: 97822749--97822789 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
97822739 AAGATCTAAA
97822749 TATTAAATAATT
1 TATT-AATAATT
97822761 TATTAATAATTT
1 TATTAATAA-TT
97822773 ATATTAATAATT
1 -TATTAATAATT
97822785 TATTA
1 TATTA
97822790 TATGATTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 10 0.37
12 8 0.30
13 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TATTAATAATT
Found at i:97822779 original size:13 final size:13
Alignment explanation
Indices: 97822748--97822787 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
97822738 TAAGATCTAA
97822748 ATATTAAATAA-TT
1 ATATT-AATAATTT
97822761 -TATTAATAATTT
1 ATATTAATAATTT
97822773 ATATTAATAATTT
1 ATATTAATAATTT
97822786 AT
1 AT
97822788 TATATGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.20
12 6 0.24
13 14 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATATTAATAATTT
Found at i:97824154 original size:47 final size:47
Alignment explanation
Indices: 97824085--97824179 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
97824075 TGCTAAAACA
* *
97824085 TTTGCTGATCTCGGAGTATATACAAACACTAAATTTCTAGATCTAGC
1 TTTGCTAATATCGGAGTATATACAAACACTAAATTTCTAGATCTAGC
97824132 TTTGCTAATATCGGAGTATATACAAACACTAAATTTCTAGATCTAGC
1 TTTGCTAATATCGGAGTATATACAAACACTAAATTTCTAGATCTAGC
97824179 T
1 T
97824180 ACTATCTGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (47 bp):
TTTGCTAATATCGGAGTATATACAAACACTAAATTTCTAGATCTAGC
Found at i:97827406 original size:38 final size:38
Alignment explanation
Indices: 97827364--97827440 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
97827354 ATCAAGTCTC
97827364 TCATTAATGTTTGTTTCCGGTAGATTCCCCATTTTCTA
1 TCATTAATGTTTGTTTCCGGTAGATTCCCCATTTTCTA
*
97827402 TCATTAATGTTTGTTTCCGGTAGATTCCCCCTTTTCTA
1 TCATTAATGTTTGTTTCCGGTAGATTCCCCATTTTCTA
97827440 T
1 T
97827441 GTAAACCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.17, C:0.22, G:0.13, T:0.48
Consensus pattern (38 bp):
TCATTAATGTTTGTTTCCGGTAGATTCCCCATTTTCTA
Found at i:97834913 original size:44 final size:44
Alignment explanation
Indices: 97834863--97834954 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
97834853 CCGAAGCAAC
*
97834863 AGTAACAGTACGACACACAAGGTGCCTCATCGACTCGAA-GTCGA
1 AGTAACAATACGACACACAAGGTGCCTCATCGACTC-AAGGTCGA
** *
97834907 AGTAACAATACGACACTTATGGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAATACGACACACAAGGTGCCTCATCGACTCAAGGTCGA
97834951 AGTA
1 AGTA
97834955 TCCCTGAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 2 0.05
44 41 0.95
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (44 bp):
AGTAACAATACGACACACAAGGTGCCTCATCGACTCAAGGTCGA
Found at i:97835850 original size:3 final size:3
Alignment explanation
Indices: 97835842--97835873 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
97835832 TTTCATTACT
97835842 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
97835874 AACATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:97838252 original size:74 final size:74
Alignment explanation
Indices: 97838164--97838311 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
97838154 ATTCTTTTTC
97838164 CATTTTGTATCTATGAAAAACTACCAGAAAATAGCTATAAATTTTAAGGTTGACTTCAGTTGCAC
1 CATTTTGTATCTATGAAAAACTACCAGAAAATAGCTATAAATTTTAAGGTTGACTTCAGTTGCAC
97838229 AATATTATT
66 AATATTATT
97838238 CATTTTGTATCTATGAAAAACTACCAGAAAATAGCTATAAATTTTAAGGTTGACTTCAGTTGCAC
1 CATTTTGTATCTATGAAAAACTACCAGAAAATAGCTATAAATTTTAAGGTTGACTTCAGTTGCAC
97838303 AATATTATT
66 AATATTATT
97838312 TTTGGATAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (74 bp):
CATTTTGTATCTATGAAAAACTACCAGAAAATAGCTATAAATTTTAAGGTTGACTTCAGTTGCAC
AATATTATT
Found at i:97839315 original size:19 final size:21
Alignment explanation
Indices: 97839279--97839319 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
97839269 GCTATTTTTA
97839279 TATTTTGTTATCTCTTTATCT
1 TATTTTGTTATCTCTTTATCT
97839300 TATTTTGTT-T-TCTTTATCT
1 TATTTTGTTATCTCTTTATCT
97839319 T
1 T
97839320 TTTATTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 1 0.05
21 9 0.45
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.71
Consensus pattern (21 bp):
TATTTTGTTATCTCTTTATCT
Found at i:97844438 original size:16 final size:16
Alignment explanation
Indices: 97844414--97844452 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
97844404 TCCTCCATTG
*
97844414 TATATAATATATATTA
1 TATAAAATATATATTA
97844430 TATAAAATATATATTA
1 TATAAAATATATATTA
97844446 T-TAAAAT
1 TATAAAAT
97844453 TTTATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAAAATATATATTA
Found at i:97848656 original size:27 final size:25
Alignment explanation
Indices: 97848621--97848678 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 25
97848611 TGCTTATGTT
97848621 AAAAACC-AACAAAAAAATGAACAGAAA
1 AAAAACCAAACAAAAAAA--AACA-AAA
*
97848648 AAAACCCAAAACAAAAAAAAACAAAA
1 AAAAACC-AAACAAAAAAAAACAAAA
97848674 AAAAA
1 AAAAA
97848679 GGATAAGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
26 7 0.26
27 10 0.37
29 10 0.37
ACGTcount: A:0.79, C:0.16, G:0.03, T:0.02
Consensus pattern (25 bp):
AAAAACCAAACAAAAAAAAACAAAA
Found at i:97856337 original size:9 final size:9
Alignment explanation
Indices: 97856323--97856379 Score: 71
Period size: 9 Copynumber: 6.3 Consensus size: 9
97856313 ATAAGTATAA
*
97856323 AATTAACTG
1 AATTAACCG
97856332 AATTAACCG
1 AATTAACCG
**
97856341 AATTAATTG
1 AATTAACCG
97856350 AATTAACCG
1 AATTAACCG
97856359 AATT-ACTCG
1 AATTAAC-CG
97856368 AATTAACCG
1 AATTAACCG
97856377 AAT
1 AAT
97856380 CATTTGTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:97856346 original size:18 final size:18
Alignment explanation
Indices: 97856323--97856379 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
97856313 ATAAGTATAA
97856323 AATTAACTGAATTAACCG
1 AATTAACTGAATTAACCG
*
97856341 AATTAATTGAATTAACCG
1 AATTAACTGAATTAACCG
97856359 AATT-ACTCGAATTAACCG
1 AATTAACT-GAATTAACCG
97856377 AAT
1 AAT
97856380 CATTTGTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 2 0.06
18 34 0.94
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (18 bp):
AATTAACTGAATTAACCG
Found at i:97856416 original size:5 final size:6
Alignment explanation
Indices: 97856401--97856441 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
97856391 ATTATATGTT
*
97856401 TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
97856442 CTTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:97856429 original size:20 final size:21
Alignment explanation
Indices: 97856406--97856449 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
97856396 ATGTTTTTTT
97856406 ATTTTTATTTTTAGTT-TTAA
1 ATTTTTATTTTTAGTTCTTAA
*
97856426 ATTTTTATTTTTATTTCTTAA
1 ATTTTTATTTTTAGTTCTTAA
97856447 ATT
1 ATT
97856450 ATTTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTTTAGTTCTTAA
Found at i:97857335 original size:27 final size:29
Alignment explanation
Indices: 97857271--97857341 Score: 85
Period size: 27 Copynumber: 2.5 Consensus size: 29
97857261 AGGTATGATT
97857271 TTATAATTTTATTATTTTAAAAGATTAAA
1 TTATAATTTTATTATTTTAAAAGATTAAA
* * *
97857300 TAATTATTTTCA-TA-TTTAGAAG-TTAAA
1 TTATAATTTT-ATTATTTTAAAAGATTAAA
97857327 TTATAATTTTATTAT
1 TTATAATTTTATTAT
97857342 AAATTAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.03
27 15 0.44
28 7 0.21
29 10 0.29
30 1 0.03
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (29 bp):
TTATAATTTTATTATTTTAAAAGATTAAA
Found at i:97859002 original size:34 final size:32
Alignment explanation
Indices: 97858964--97859050 Score: 79
Period size: 34 Copynumber: 2.6 Consensus size: 32
97858954 ATATATGCGT
97858964 AATATCTATAAATACATATATAATATAATGTT-AA
1 AATATCTATAAATACATA-AT-A-ATAATGTTGAA
*
97858998 AATATTCACATAATATACATAATAATAATGTTGAA
1 AATA-TC-TATAA-ATACATAATAATAATGTTGAA
* *
97859033 AACATCTATTAATA-ATAA
1 AATATCTATAAATACATAA
97859051 ATATATACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
31 4 0.09
32 3 0.07
33 3 0.07
34 14 0.31
35 8 0.18
36 6 0.13
37 7 0.16
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (32 bp):
AATATCTATAAATACATAATAATAATGTTGAA
Found at i:97861182 original size:44 final size:44
Alignment explanation
Indices: 97861054--97861776 Score: 653
Period size: 44 Copynumber: 16.5 Consensus size: 44
97861044 TGCCATCGTC
* * * *
97861054 GATCGGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * * * *
97861099 GATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * * * *
97861142 GATCTGCTACCCTCGATTTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * *
97861186 GATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
97861231 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
97861274 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * *
97861318 GATCTGCTTTCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * *
97861362 GATCTGCTA-CATTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATC-TTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * *
97861406 GATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
97861451 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
97861494 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * *
97861538 GATCTGCT-TCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * *
97861581 GATCTGCTA-CATTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATC-TTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * * *
97861625 AATCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * *
97861670 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
97861713 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* *
97861757 GATCTGCTTTCTTCAATCTA
1 GATCTGCTATCTTCGATCTA
97861777 TCCCACTGTA
Statistics
Matches: 534, Mismatches: 120, Indels: 49
0.76 0.17 0.07
Matches are distributed among these distances:
42 5 0.01
43 120 0.22
44 333 0.62
45 76 0.14
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
Found at i:97881433 original size:18 final size:18
Alignment explanation
Indices: 97881410--97881584 Score: 188
Period size: 18 Copynumber: 9.7 Consensus size: 18
97881400 GCATGATTTG
*
97881410 AACTTGGAGCACAGTGCA
1 AACTTGGAGCACATTGCA
* * * *
97881428 AACTTGGAACAAAATGCG
1 AACTTGGAGCACATTGCA
97881446 AACTTGGAGCACATTGCA
1 AACTTGGAGCACATTGCA
*
97881464 AACTTGGAGCACATGGCA
1 AACTTGGAGCACATTGCA
*
97881482 AACTTGGAGCACAATGCA
1 AACTTGGAGCACATTGCA
* *
97881500 AACTTGGAGCATATTGCG
1 AACTTGGAGCACATTGCA
** * *
97881518 AACTTACAGCAGATTGCG
1 AACTTGGAGCACATTGCA
* *
97881536 AACTTAGAGCACATTGCT
1 AACTTGGAGCACATTGCA
* *
97881554 AACTTGGAGCACAATGCT
1 AACTTGGAGCACATTGCA
*
97881572 AACTTAGAGCACA
1 AACTTGGAGCACA
97881585 GTGTGGACTC
Statistics
Matches: 134, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 134 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (18 bp):
AACTTGGAGCACATTGCA
Found at i:97887724 original size:14 final size:14
Alignment explanation
Indices: 97887705--97887731 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97887695 CCATTAAAGA
97887705 TTTTAAATAATTTT
1 TTTTAAATAATTTT
97887719 TTTTAAATAATTT
1 TTTTAAATAATTT
97887732 AATAATAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTAAATAATTTT
Found at i:97887738 original size:11 final size:11
Alignment explanation
Indices: 97887724--97887748 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
97887714 ATTTTTTTTA
97887724 AATAATTTAAT
1 AATAATTTAAT
97887735 AATAATTTAAT
1 AATAATTTAAT
97887746 AAT
1 AAT
97887749 TTTTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATAATTTAAT
Found at i:97893132 original size:24 final size:24
Alignment explanation
Indices: 97893105--97893175 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
97893095 AATGATAAGA
97893105 AAATATTATTAAATTATTTAT-TTT
1 AAATATTATT-AATTATTTATGTTT
97893129 AAATA-T-TTAATTA-TTATGTTGT
1 AAATATTATTAATTATTTATGTT-T
* *
97893151 CAATATTATTAATTTTTTATGTTT
1 AAATATTATTAATTATTTATGTTT
97893175 A
1 A
97893176 TATACTCAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 4 0.10
21 7 0.18
22 7 0.18
23 2 0.05
24 12 0.31
25 7 0.18
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATATTATTAATTATTTATGTTT
Found at i:97893137 original size:13 final size:15
Alignment explanation
Indices: 97893108--97893144 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
97893098 GATAAGAAAA
97893108 TATTATTAAATTATT
1 TATTATTAAATTATT
97893123 TATT-TTAAA-TATT
1 TATTATTAAATTATT
97893136 TAATTATTA
1 T-ATTATTA
97893145 TGTTGTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.25
14 8 0.40
15 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATTAAATTATT
Found at i:97895574 original size:30 final size:30
Alignment explanation
Indices: 97895506--97895730 Score: 118
Period size: 30 Copynumber: 7.5 Consensus size: 30
97895496 TTTGGTTATC
* * **
97895506 AATTATGAAAATGGTTGGTGACGACCATTG
1 AATTATGAAAAGGGATGGTGACGACCATCA
*
97895536 AATAATGAAAAGGGATGGTGACGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
* * * *
97895566 AATTATGAAAAGGAATGGCT-TCGACTATCG
1 AATTATGAAAAGGGATGG-TGACGACCATCA
* ** * * **** *
97895596 TACAATAAAAAGGAATGACCTCGACTATC-
1 AATTATGAAAAGGGATGGTGACGACCATCA
* * * * *
97895625 AATCTATTGAAAATGGATAGCT-TCGGCTAT-A
1 AAT-TA-TGAAAAGGGAT-GGTGACGACCATCA
* *
97895656 AATTATGAAAAAGGGATGGTGATGACCATCG
1 AATTATG-AAAAGGGATGGTGACGACCATCA
* *
97895687 ATTTATG-AAAGGGATGGTGATGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCATCA
97895716 AATTATGAAAAGGGA
1 AATTATGAAAAGGGA
97895731 AACCTCGGCT
Statistics
Matches: 150, Mismatches: 35, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
29 32 0.21
30 92 0.61
31 25 0.17
32 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCATCA
Found at i:97895698 original size:150 final size:149
Alignment explanation
Indices: 97895454--97895728 Score: 390
Period size: 150 Copynumber: 1.8 Consensus size: 149
97895444 TCGATGAATG
* * * * * * * *
97895454 AAAAGGGATGACTTCGGCTATCGATCTATGAAAAAGGATAGCTTTGGTTATCAATTATGAAAATG
1 AAAAGGAATGACCTCGACTATCAATCTATGAAAAAGGATAGCTTCGGCTATAAATTATGAAAAGG
* *
97895519 GTTGGTGACGACCATTGAATAATGAAAAGGGATGGTGACGACCATCAAATTATGAAAAGGAATGG
66 GATGGTGACGACCATCGAATAATGAAAAGGGATGGTGACGACCATCAAATTATGAAAAGGAATGG
97895584 CTTCGACTATCGTACAATA
131 CTTCGACTATCGTACAATA
*
97895603 AAAAGGAATGACCTCGACTATCAATCTATTGAAAATGGATAGCTTCGGCTATAAATTATGAAAAA
1 AAAAGGAATGACCTCGACTATCAATCTA-TGAAAAAGGATAGCTTCGGCTATAAATTATG-AAAA
* * * *
97895668 GGGATGGTGATGACCATCGATTTATG-AAAGGGATGGTGATGACCATCAAATTATGAAAAGG
64 GGGATGGTGACGACCATCGAATAATGAAAAGGGATGGTGACGACCATCAAATTATGAAAAGG
97895729 GAAACCTCGG
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
149 24 0.22
150 61 0.56
151 24 0.22
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (149 bp):
AAAAGGAATGACCTCGACTATCAATCTATGAAAAAGGATAGCTTCGGCTATAAATTATGAAAAGG
GATGGTGACGACCATCGAATAATGAAAAGGGATGGTGACGACCATCAAATTATGAAAAGGAATGG
CTTCGACTATCGTACAATA
Found at i:97895702 original size:29 final size:30
Alignment explanation
Indices: 97895655--97895730 Score: 118
Period size: 29 Copynumber: 2.5 Consensus size: 30
97895645 CTTCGGCTAT
97895655 AAATTATGAAAAAGGGATGGTGATGACCATC
1 AAATTATG-AAAAGGGATGGTGATGACCATC
* *
97895686 GATTTATG-AAAGGGATGGTGATGACCATC
1 AAATTATGAAAAGGGATGGTGATGACCATC
97895715 AAATTATGAAAAGGGA
1 AAATTATGAAAAGGGA
97895731 AACCTCGGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 27 0.68
30 7 0.17
31 6 0.15
ACGTcount: A:0.41, C:0.08, G:0.28, T:0.24
Consensus pattern (30 bp):
AAATTATGAAAAGGGATGGTGATGACCATC
Found at i:97895783 original size:30 final size:30
Alignment explanation
Indices: 97895716--97895790 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
97895706 ATGACCATCA
*
97895716 AATTATGAAAAGGGA-AACCTCGGCTATCG
1 AATTATGAAAAGGGATAACCTCGGCTACCG
* *
97895745 AATTATGAAAAGGGATAACTTCGGTTACCG
1 AATTATGAAAAGGGATAACCTCGGCTACCG
*
97895775 ATTTATGAAAAGGGAT
1 AATTATGAAAAGGGAT
97895791 GTGTTAACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 15 0.37
30 26 0.63
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (30 bp):
AATTATGAAAAGGGATAACCTCGGCTACCG
Found at i:97898867 original size:13 final size:13
Alignment explanation
Indices: 97898849--97898874 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97898839 AAATAAAGTG
97898849 ATAAAAATAAAAA
1 ATAAAAATAAAAA
97898862 ATAAAAATAAAAA
1 ATAAAAATAAAAA
97898875 TGCAAGATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:97899063 original size:4 final size:4
Alignment explanation
Indices: 97899031--97899084 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
97899021 ATCTTGTTTT
* * * * *
97899031 TAAA TATA TAAA -AAA TAAG CAAG TAAA TAAA TAAA TAGA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
97899078 TAAA TAA
1 TAAA TAA
97899085 TAGTAATAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:97901765 original size:40 final size:40
Alignment explanation
Indices: 97901728--97901907 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
97901718 GCTACTCGTT
*
97901728 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
97901768 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
97901808 CCAATGCCTTCGGG-CTTAGCTCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
97901847 CAAATGCCTTC-GGATCTTAGTCCAGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
97901888 CAAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
97901908 TCGGACATCA
Statistics
Matches: 116, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 71 0.61
41 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:97901844 original size:79 final size:81
Alignment explanation
Indices: 97901730--97901912 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
97901720 TACTCGTTCA
* * * *
97901730 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCTCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCAG
* * *
97901793 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGCA-C
**
97901810 AATGCCTTCGGG-CTTAGCTCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACTTAGCTCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
97901873 TATAGTCACTTAGCAC
66 TATAGTCACTTAGCAC
*
97901889 AAAGCCTTCGGGACTTAGCTCGGA
1 AATGCCTTCGGGACTTAGCTCGGA
97901913 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCTCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAGA
TATAGTCACTTAGCAC
Found at i:97910779 original size:47 final size:47
Alignment explanation
Indices: 97910710--97910804 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
97910700 TTACAAAGGT
*
97910710 TATGCTATCAAAAGATTGAGCATAACTGGGGCCCTAGTTAACAGTGG
1 TATGCTATCAAAAGATGGAGCATAACTGGGGCCCTAGTTAACAGTGG
* * *
97910757 TATGCTGTCAAAAGATGGAGCATAATTGGGGCCCTAGTTGACAGTGG
1 TATGCTATCAAAAGATGGAGCATAACTGGGGCCCTAGTTAACAGTGG
97910804 T
1 T
97910805 TATGTGGGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (47 bp):
TATGCTATCAAAAGATGGAGCATAACTGGGGCCCTAGTTAACAGTGG
Found at i:97915161 original size:18 final size:18
Alignment explanation
Indices: 97915138--97915185 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
97915128 TGAGCGATGT
*
97915138 AAGTCCTAGGATCGCTGC
1 AAGTCCAAGGATCGCTGC
* * *
97915156 AAGTCCGAGGATTGCTGT
1 AAGTCCAAGGATCGCTGC
97915174 AAGTCCAAGGAT
1 AAGTCCAAGGAT
97915186 ATCTATAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (18 bp):
AAGTCCAAGGATCGCTGC
Found at i:97921291 original size:23 final size:23
Alignment explanation
Indices: 97921265--97921316 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
97921255 TGATTTTTAA
* **
97921265 ATTTTGAATTATTTAGTGGTAAT
1 ATTTAGAATTATTTAGTAATAAT
97921288 ATTTAGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTAATAAT
97921311 ATTTAG
1 ATTTAG
97921317 TGATAATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTAATAAT
Found at i:97921292 original size:13 final size:13
Alignment explanation
Indices: 97921274--97921328 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
97921264 AATTTTGAAT
*
97921274 TATTTAGTGGTAA
1 TATTTAGTGATAA
*
97921287 TATTTA--GA-AT
1 TATTTAGTGATAA
*
97921297 TATTTAGTAATAA
1 TATTTAGTGATAA
97921310 TATTTAGTGATAA
1 TATTTAGTGATAA
97921323 TATTTA
1 TATTTA
97921329 AAATTATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 7 0.21
11 1 0.03
12 1 0.03
13 25 0.74
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:97921324 original size:36 final size:36
Alignment explanation
Indices: 97921274--97921351 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
97921264 AATTTTGAAT
* *
97921274 TATTTAGTGGTAATATTTAGAATTATTTAGTAATAA
1 TATTTAGTGATAATATTTAAAATTATTTAGTAATAA
* *
97921310 TATTTAGTGATAATATTTAAAATTATTTTGTGATAA
1 TATTTAGTGATAATATTTAAAATTATTTAGTAATAA
97921346 TATTTA
1 TATTTA
97921352 AGAAAAATCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (36 bp):
TATTTAGTGATAATATTTAAAATTATTTAGTAATAA
Found at i:97921717 original size:30 final size:30
Alignment explanation
Indices: 97921681--97921743 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
97921671 ACTTAATAAG
*
97921681 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
97921711 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
97921741 CAA
1 CAA
97921744 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:97924777 original size:11 final size:11
Alignment explanation
Indices: 97924763--97924801 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
97924753 ATGAGATATT
97924763 TTATTATTTTA
1 TTATTATTTTA
*
97924774 TTATTATTCTA
1 TTATTATTTTA
*
97924785 TTATTAATTTA
1 TTATTATTTTA
97924796 TTATTA
1 TTATTA
97924802 ATTATTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:97927918 original size:46 final size:46
Alignment explanation
Indices: 97927866--97928185 Score: 374
Period size: 46 Copynumber: 7.0 Consensus size: 46
97927856 GCTTTCTAAA
**
97927866 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
97927912 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGAAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * * *
97927958 GGGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* **
97928004 ATGAAATGAATAAGACCATGGTTGAAAGATACCAAGGCAATGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
97928050 A-GAAAATGAATAAGACCATGGTTAAAAGATACCATGGCAACATGAT
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * * *
97928096 GGGAAATGAATAAAACCATGGTTGAAAGATACAATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
97928142 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
97928186 TCGAAGATAA
Statistics
Matches: 236, Mismatches: 35, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
45 2 0.01
46 233 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:97928114 original size:138 final size:138
Alignment explanation
Indices: 97927866--97928170 Score: 443
Period size: 138 Copynumber: 2.2 Consensus size: 138
97927856 GCTTTCTAAA
* * ** *
97927866 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACTAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCAAGGCAACATGATATGAAATGAATAAGACCAT
* * *
97927931 GGTTGAAAGATACCATGGAAACATGATGGGAAATGAATAAGACCATGGTTGAAAGATACTATGGC
66 GGTTAAAAGATACCATGGAAACATGATGGGAAATGAATAAAACCATGGTTGAAAGATACAATGGC
* *
97927996 AGCGTGAC
131 AACATGAC
* **
97928004 ATGAAATGAATAAGACCATGGTTGAAAGATACCAAGGCAATGTGATA-GAAAATGAATAAGACCA
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCAAGGCAACATGATATG-AAATGAATAAGACCA
*
97928068 TGGTTAAAAGATACCATGGCAACATGATGGGAAATGAATAAAACCATGGTTGAAAGATACAATGG
65 TGGTTAAAAGATACCATGGAAACATGATGGGAAATGAATAAAACCATGGTTGAAAGATACAATGG
97928133 CAACATGAC
130 CAACATGAC
*
97928142 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAGTAAGACCATGGTTGAAAGA
97928171 CACTATGGCA
Statistics
Matches: 149, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
137 2 0.01
138 147 0.99
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.21
Consensus pattern (138 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCAAGGCAACATGATATGAAATGAATAAGACCAT
GGTTAAAAGATACCATGGAAACATGATGGGAAATGAATAAAACCATGGTTGAAAGATACAATGGC
AACATGAC
Found at i:97929966 original size:46 final size:46
Alignment explanation
Indices: 97929916--97930091 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
97929906 TGGTTGAGCA
97929916 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
97929962 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
97930007 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
97930055 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97930092 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97930072 original size:93 final size:93
Alignment explanation
Indices: 97929913--97930084 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
97929903 GGATGGTTGA
*
97929913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
97929978 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
97930006 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGAG
97930070 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
97930085 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97931844 original size:21 final size:21
Alignment explanation
Indices: 97931790--97931847 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
97931780 TATACGGCCT
*
97931790 GACCACACGGGCATGTCCCTA
1 GACCACACGGGCGTGTCCCTA
97931811 GACCACACGGGCGTGTCCCTA
1 GACCACACGGGCGTGTCCCTA
97931832 GACCACACGGGCGTGT
1 GACCACACGGGCGTGT
97931848 GAGCCCTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (21 bp):
GACCACACGGGCGTGTCCCTA
Found at i:97933768 original size:23 final size:23
Alignment explanation
Indices: 97933720--97933768 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
97933710 TTATGGGGGG
** *
97933720 AAAAATCAAATAAATTATAAATA
1 AAAAATCAAATAAAACATAAACA
97933743 AAAAATCAAATCAAAACA-AAACA
1 AAAAATCAAAT-AAAACATAAACA
97933766 AAA
1 AAA
97933769 GAGGGAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.16
Consensus pattern (23 bp):
AAAAATCAAATAAAACATAAACA
Found at i:97936124 original size:35 final size:35
Alignment explanation
Indices: 97936026--97936203 Score: 106
Period size: 35 Copynumber: 4.8 Consensus size: 35
97936016 AATTGACGGA
* * *
97936026 AGTTACGCCCAGCGCTAGTCGGATATATCGACGAAT
1 AGTTGCGCCCAGCGCTAGTCGGATAAATCAACG-AT
* * * * *
97936062 AATCAGGGAGCCCAGCTCTAGTTGGATAAATCAACGAT
1 AGT---TGCGCCCAGCGCTAGTCGGATAAATCAACGAT
* *
97936100 AGTTGCGCTCAGCGCTAGTCGGATAAA-CTGACGATAT
1 AGTTGCGCCCAGCGCTAGTCGGATAAATC-AACG--AT
* * * * *
97936137 AAGTAGTGAGCCCAACTCTAGTTGGATAAACCAACGAT
1 -AGT--TGCGCCCAGCGCTAGTCGGATAAATCAACGAT
* *
97936175 ATTTGCGCCCAGCGCTAGTCAGATAAATC
1 AGTTGCGCCCAGCGCTAGTCGGATAAATC
97936204 GACAAATGTG
Statistics
Matches: 104, Mismatches: 28, Indels: 21
0.68 0.18 0.14
Matches are distributed among these distances:
34 1 0.01
35 42 0.40
36 2 0.02
37 4 0.04
38 9 0.09
39 23 0.22
40 22 0.21
41 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (35 bp):
AGTTGCGCCCAGCGCTAGTCGGATAAATCAACGAT
Found at i:97936166 original size:75 final size:74
Alignment explanation
Indices: 97936026--97936206 Score: 249
Period size: 75 Copynumber: 2.4 Consensus size: 74
97936016 AATTGACGGA
* * *
97936026 AGTTACGCCCAGCGCTAGTCGGATATATCGACGAATAATCAGGGAGCCCAGCTCTAGTTGGATAA
1 AGTTGCGCCCAGCGCTAGTCGGATAAATCGACGAATAATCAGGGAGCCCAACTCTAGTTGGATAA
*
97936091 ATCAACGAT
66 ACCAACGAT
* *
97936100 AGTTGCGCTCAGCGCTAGTCGGATAAA-CTGACGATATAAGT-AGTGAGCCCAACTCTAGTTGGA
1 AGTTGCGCCCAGCGCTAGTCGGATAAATC-GACGA-ATAA-TCAGGGAGCCCAACTCTAGTTGGA
97936163 TAAACCAACGAT
63 TAAACCAACGAT
* *
97936175 ATTTGCGCCCAGCGCTAGTCAGATAAATCGAC
1 AGTTGCGCCCAGCGCTAGTCGGATAAATCGAC
97936207 AAATGTGTGC
Statistics
Matches: 94, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
73 1 0.01
74 29 0.31
75 62 0.66
76 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (74 bp):
AGTTGCGCCCAGCGCTAGTCGGATAAATCGACGAATAATCAGGGAGCCCAACTCTAGTTGGATAA
ACCAACGAT
Found at i:97936365 original size:37 final size:37
Alignment explanation
Indices: 97936322--97936392 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
97936312 ATTTCATAAT
97936322 CTCAATATCACATTCACTTCAATTATCTATTAATCAA
1 CTCAATATCACATTCACTTCAATTATCTATTAATCAA
*
97936359 CTCAATATCATATTCACTTCAATTATCTATTAAT
1 CTCAATATCACATTCACTTCAATTATCTATTAAT
97936393 GATTCATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.41
Consensus pattern (37 bp):
CTCAATATCACATTCACTTCAATTATCTATTAATCAA
Found at i:97936389 original size:17 final size:17
Alignment explanation
Indices: 97936333--97936389 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
97936323 TCAATATCAC
97936333 ATTCACTTCAATTATCT
1 ATTCACTTCAATTATCT
97936350 ATTAATCAAC-TCAA-TATCAT
1 A-T--TC-ACTTCAATTATC-T
97936370 ATTCACTTCAATTATCT
1 ATTCACTTCAATTATCT
97936387 ATT
1 ATT
97936390 AATGATTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
16 2 0.06
17 11 0.33
18 5 0.15
19 5 0.15
20 8 0.24
21 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTCACTTCAATTATCT
Found at i:97936862 original size:37 final size:37
Alignment explanation
Indices: 97936821--97936897 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
97936811 AATATAAATA
* *
97936821 AAATTCTAATATATTGGGTTGCTCAGACAGTATAATC
1 AAATTCTAATATATTGGGCTGCTCAAACAGTATAATC
97936858 AAATTCTAATATATTGGGCTGCTCAAACAGTATAATC
1 AAATTCTAATATATTGGGCTGCTCAAACAGTATAATC
97936895 AAA
1 AAA
97936898 ATATATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (37 bp):
AAATTCTAATATATTGGGCTGCTCAAACAGTATAATC
Found at i:97936914 original size:14 final size:14
Alignment explanation
Indices: 97936895--97936922 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97936885 CAGTATAATC
97936895 AAAATATATAAATA
1 AAAATATATAAATA
97936909 AAAATATATAAATA
1 AAAATATATAAATA
97936923 GGCTATTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATATATAAATA
Found at i:97938005 original size:11 final size:12
Alignment explanation
Indices: 97937979--97938027 Score: 59
Period size: 11 Copynumber: 4.2 Consensus size: 12
97937969 AGCCGTGCGA
97937979 TTTCTTCTCTCTT
1 TTTCTT-TCTCTT
97937992 TTTCTTTC-CTT
1 TTTCTTTCTCTT
97938003 TTTCTTTCTCTCT
1 TTTCTTTCTCT-T
97938016 TTT-TTT-TCTT
1 TTTCTTTCTCTT
97938026 TT
1 TT
97938028 GTTTGCGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 3 0.09
11 14 0.41
12 7 0.21
13 10 0.29
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTCTTTCTCTT
Found at i:97938026 original size:23 final size:24
Alignment explanation
Indices: 97937979--97938027 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
97937969 AGCCGTGCGA
97937979 TTTCTTCTCTCTTTTTCTTTCCTT
1 TTTCTTCTCTCTTTTTCTTTCCTT
97938003 TTTCTTTCTCTCTTTTT-TTT-CTT
1 TTTC-TTCTCTCTTTTTCTTTCCTT
97938026 TT
1 TT
97938028 GTTTGCGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.21
24 7 0.29
25 12 0.50
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTCTTCTCTCTTTTTCTTTCCTT
Found at i:97946961 original size:17 final size:17
Alignment explanation
Indices: 97946939--97946974 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
97946929 GCCGAAATTT
97946939 CAAAAA-AAAGAATAAAA
1 CAAAAACAAA-AATAAAA
97946956 CAAAAACAAAAATAAAA
1 CAAAAACAAAAATAAAA
97946973 CA
1 CA
97946975 TGATAACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.81, C:0.11, G:0.03, T:0.06
Consensus pattern (17 bp):
CAAAAACAAAAATAAAA
Found at i:97949854 original size:73 final size:75
Alignment explanation
Indices: 97949672--97949859 Score: 213
Period size: 76 Copynumber: 2.5 Consensus size: 75
97949662 TTTTTGGTAA
* * * *
97949672 ATTGTAAATATTGATATATTATTGATGTACAATATAATAGAATAAATATAAATATATTTTTTTTA
1 ATTGTAAATA-AGATACATTATTGATGTAAAATATAATAGAATAAATATAAATATATTTTTTATA
97949737 TTTTTTCTCAG
65 TTTTTTCTCAG
* * * *
97949748 ATTGTAAATAAGTATATATTATTGATATGAAATACAATAGAATACAATA-AAA-ATATTTTTTA-
1 ATTGTAAATAAG-ATACATTATTGATGTAAAATATAATAGAATA-AATATAAATATATTTTTTAT
* *
97949810 ATTTTTTTCTTAT
64 A-TTTTTTCTCAG
*
97949823 ATTGTAAATGAG-TACATTATTGATGTAAAATATAATA
1 ATTGTAAATAAGATACATTATTGATGTAAAATATAATA
97949860 CAACAACTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
73 21 0.22
74 1 0.01
75 30 0.31
76 40 0.42
77 4 0.04
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (75 bp):
ATTGTAAATAAGATACATTATTGATGTAAAATATAATAGAATAAATATAAATATATTTTTTATAT
TTTTTCTCAG
Found at i:97949871 original size:55 final size:56
Alignment explanation
Indices: 97949812--97949918 Score: 128
Period size: 55 Copynumber: 1.9 Consensus size: 56
97949802 ATTTTTTAAT
* * * *
97949812 TTTTTTCTTAT-ATTGTAAATGAGTACATTATTGATG-TAAAATATAATACAACAAC
1 TTTTTTCATATAATTG-AAATAAGTACATTATGGATGAAAAAATATAATACAACAAC
* * *
97949867 TTTTTTGATATAATTGGAATAAGTACATTATGGATGAAAAAATTTAATACAA
1 TTTTTTCATATAATTGAAATAAGTACATTATGGATGAAAAAATATAATACAA
97949919 TACAAATTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
55 26 0.60
56 17 0.40
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (56 bp):
TTTTTTCATATAATTGAAATAAGTACATTATGGATGAAAAAATATAATACAACAAC
Found at i:97953680 original size:24 final size:24
Alignment explanation
Indices: 97953646--97953697 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
97953636 TTTCTAGAGG
* *
97953646 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
97953670 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
97953694 ATTT
1 ATTT
97953698 GACCTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:97971835 original size:39 final size:39
Alignment explanation
Indices: 97971781--97971860 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
97971771 CTGTCATGAT
*
97971781 CTTTAGCTAATTTACTAATGGACTGAGACATCATAGCTA
1 CTTTAGCTAATTTACTAATGGACTGAGACACCATAGCTA
97971820 CTTTAGCTAATTTACTAATGGACTGAGACACCATAGCTA
1 CTTTAGCTAATTTACTAATGGACTGAGACACCATAGCTA
97971859 CT
1 CT
97971861 ACAACCTGTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (39 bp):
CTTTAGCTAATTTACTAATGGACTGAGACACCATAGCTA
Found at i:97974559 original size:29 final size:29
Alignment explanation
Indices: 97974490--97974555 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
97974480 CTCAGTCTTT
97974490 TATTTTATAACAAAAAATATATATTAATAA
1 TATTTTATAA-AAAAAATATATATTAATAA
*
97974520 TATTTTATAAAATAAAAT-TATATTTATAA
1 TATTTTATAAAA-AAAATATATATTAATAA
97974549 -ATTTTAT
1 TATTTTAT
97974556 TAAAGATACC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 7 0.21
29 12 0.35
30 15 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (29 bp):
TATTTTATAAAAAAAATATATATTAATAA
Found at i:97976589 original size:16 final size:16
Alignment explanation
Indices: 97976570--97976603 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
97976560 TCTCCTTTGC
*
97976570 ATGTTTTATCATAAAA
1 ATGTTATATCATAAAA
*
97976586 ATGTTATCTCATAAAA
1 ATGTTATATCATAAAA
97976602 AT
1 AT
97976604 ATTAATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
ATGTTATATCATAAAA
Found at i:97977615 original size:15 final size:15
Alignment explanation
Indices: 97977595--97977623 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97977585 AGCTATCGTT
97977595 TTATTTTAAATTATA
1 TTATTTTAAATTATA
97977610 TTATTTTAAATTAT
1 TTATTTTAAATTAT
97977624 GTTTGATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATTTTAAATTATA
Found at i:97985810 original size:27 final size:27
Alignment explanation
Indices: 97985749--97985810 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
97985739 GTCAGAACAG
*
97985749 TAATTTGACTTTAGGGACTAAATTGAA
1 TAATTTGTCTTTAGGGACTAAATTGAA
97985776 TAATTTGTCTTTAGGGACTAAATTGAA
1 TAATTTGTCTTTAGGGACTAAATTGAA
97985803 TAATTTGT
1 TAATTTGT
97985811 AAAACTTGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (27 bp):
TAATTTGTCTTTAGGGACTAAATTGAA
Found at i:97986872 original size:19 final size:19
Alignment explanation
Indices: 97986848--97986945 Score: 110
Period size: 19 Copynumber: 5.2 Consensus size: 19
97986838 AATCTTTAAG
*
97986848 GATATGAAATCTTAAATAT
1 GATATGCAATCTTAAATAT
* * *
97986867 GATATGCGATATTAGATAT
1 GATATGCAATCTTAAATAT
*
97986886 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAAATAT
*
97986903 GATATGCAATCTTACATAT
1 GATATGCAATCTTAAATAT
97986922 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT-AA-ATAT
97986943 GAT
1 GAT
97986946 CTTGTAATCT
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.22
19 44 0.66
20 1 0.01
21 7 0.10
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAAATAT
Found at i:97986897 original size:36 final size:37
Alignment explanation
Indices: 97986855--97986945 Score: 112
Period size: 36 Copynumber: 2.4 Consensus size: 37
97986845 AAGGATATGA
* *
97986855 AATCTTAAATATGATATGCGATATTAGATATGATA-C
1 AATCTTAAATATGATATGCAATATTACATATGATAGC
* *
97986891 AATCTTAGATATGATATGCAATCTTACATATGATATGC
1 AATCTTAAATATGATATGCAATATTACATATGATA-GC
97986929 AATCTTGAAGATATGAT
1 AATCTT-AA-ATATGAT
97986946 CTTGTAATCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
36 31 0.67
38 7 0.15
39 1 0.02
40 7 0.15
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (37 bp):
AATCTTAAATATGATATGCAATATTACATATGATAGC
Found at i:97988693 original size:32 final size:32
Alignment explanation
Indices: 97988657--97988737 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
97988647 AAGGTGATGG
*
97988657 ATAGTTAAT-AATGTATGCATTTTAGCAATTTA
1 ATAGTTAATGAATG-ATGCATATTAGCAATTTA
* ** *
97988689 ATAGTTAATGGATGATGGGTATTAGCATTTTA
1 ATAGTTAATGAATGATGCATATTAGCAATTTA
*
97988721 ATAGTTAATGGATGATG
1 ATAGTTAATGAATGATG
97988738 GGCATGGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 40 0.93
33 3 0.07
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.41
Consensus pattern (32 bp):
ATAGTTAATGAATGATGCATATTAGCAATTTA
Found at i:97988738 original size:32 final size:32
Alignment explanation
Indices: 97988678--97988739 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
97988668 TGTATGCATT
97988678 TTAGCAATTTAATAGTTAATGGATGATGGGTA
1 TTAGCAATTTAATAGTTAATGGATGATGGGTA
*
97988710 TTAGCATTTTAATAGTTAATGGATGATGGG
1 TTAGCAATTTAATAGTTAATGGATGATGGG
97988740 CATGGTAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (32 bp):
TTAGCAATTTAATAGTTAATGGATGATGGGTA
Found at i:97990276 original size:26 final size:26
Alignment explanation
Indices: 97990225--97990276 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
97990215 TTACAGTTTC
*
97990225 ACCCCTAGGAGATAAATTATCGAAAT
1 ACCCCTAGGAGATAAATTACCGAAAT
* *
97990251 ACCCCTAGG-GTTAAATTGACCTAAAT
1 ACCCCTAGGAGATAAATT-ACCGAAAT
97990277 GCATGTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
ACCCCTAGGAGATAAATTACCGAAAT
Found at i:97990327 original size:21 final size:21
Alignment explanation
Indices: 97990288--97990327 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97990278 CATGTTTTAC
*
97990288 TGTTGTTATTTATTTATGCCA
1 TGTTGTTATTTATTGATGCCA
97990309 TGTTGTTA-TTATCTGATGC
1 TGTTGTTATTTAT-TGATGC
97990328 ATGGGACTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.55
Consensus pattern (21 bp):
TGTTGTTATTTATTGATGCCA
Found at i:97991889 original size:12 final size:12
Alignment explanation
Indices: 97991872--97991901 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
97991862 ACTCGGGGAA
97991872 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
97991884 GAGGCCGTGGTT
1 GAGGCCGTGGTC
97991896 GAGGCC
1 GAGGCC
97991902 AAAGTAGTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.50, T:0.17
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:97996769 original size:32 final size:32
Alignment explanation
Indices: 97996733--97996797 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
97996723 TGTATGCATT
97996733 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97996765 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
97996797 T
1 T
97996798 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:97998301 original size:26 final size:26
Alignment explanation
Indices: 97998272--97998324 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
97998262 TTTACAGTTT
97998272 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
97998298 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
97998324 T
1 T
97998325 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:97999709 original size:20 final size:20
Alignment explanation
Indices: 97999642--97999711 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 20
97999632 TGAGCTGAAC
97999642 TCATGAGTTGTGGTCTGAGT
1 TCATGAGTTGTGGTCTGAGT
* * * **
97999662 TCATAATATATGTGACATCTGAAC
1 TCATGA-GT-TGTG--GTCTGAGT
97999686 TCATGAGTTGTGGTCTGAGT
1 TCATGAGTTGTGGTCTGAGT
97999706 TCATGA
1 TCATGA
97999712 TATATGTTAC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
20 16 0.44
21 1 0.03
22 8 0.22
23 1 0.03
24 10 0.28
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (20 bp):
TCATGAGTTGTGGTCTGAGT
Found at i:98000690 original size:21 final size:21
Alignment explanation
Indices: 98000664--98000708 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
98000654 ATATGAAAGC
98000664 ATGATAGTTTGAATAGGTGAT
1 ATGATAGTTTGAATAGGTGAT
98000685 ATGATAGTTTGAATAGGTGAT
1 ATGATAGTTTGAATAGGTGAT
98000706 ATG
1 ATG
98000709 TTGACATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (21 bp):
ATGATAGTTTGAATAGGTGAT
Found at i:98001507 original size:21 final size:21
Alignment explanation
Indices: 98001483--98001523 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98001473 TTTTTATTTA
* *
98001483 ATTAGTAAATAGATATTTATT
1 ATTAGTAAAAAAATATTTATT
*
98001504 ATTATTAAAAAAATATTTAT
1 ATTAGTAAAAAAATATTTAT
98001524 GAGATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
ATTAGTAAAAAAATATTTATT
Found at i:98001815 original size:16 final size:15
Alignment explanation
Indices: 98001788--98001826 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
98001778 GAAACAAAAG
98001788 AGAGAAAGAAGAAAC
1 AGAGAAAGAAGAAAC
98001803 AGAGAACAGAAGAAA-
1 AGAGAA-AGAAGAAAC
98001818 A-AGAAAGAA
1 AGAGAAAGAA
98001827 AGGAAAGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 7 0.30
16 8 0.35
ACGTcount: A:0.69, C:0.05, G:0.26, T:0.00
Consensus pattern (15 bp):
AGAGAAAGAAGAAAC
Found at i:98006100 original size:18 final size:19
Alignment explanation
Indices: 98006065--98006100 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
98006055 AACTTTTTTC
*
98006065 CTTTTACTTTCTCCCAAAA
1 CTTTTACTTTCCCCCAAAA
98006084 CTTTTAC-TTCCCCCAAA
1 CTTTTACTTTCCCCCAAA
98006101 CCCCCAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (19 bp):
CTTTTACTTTCCCCCAAAA
Found at i:98006877 original size:23 final size:23
Alignment explanation
Indices: 98006851--98006897 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
98006841 TTGGCTCAAA
98006851 GAAGTCAGATTTCTTGGTCATGT
1 GAAGTCAGATTTCTTGGTCATGT
*
98006874 GAAGTCGGATTTCTTGGTCATGT
1 GAAGTCAGATTTCTTGGTCATGT
98006897 G
1 G
98006898 GTTTCAGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.19, C:0.13, G:0.30, T:0.38
Consensus pattern (23 bp):
GAAGTCAGATTTCTTGGTCATGT
Found at i:98026467 original size:13 final size:13
Alignment explanation
Indices: 98026445--98026476 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
98026435 GTGACACCCA
*
98026445 GCCATACGACACG
1 GCCATGCGACACG
98026458 GCCATGCGACACG
1 GCCATGCGACACG
98026471 GCCATG
1 GCCATG
98026477 TGTCCCTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.38, G:0.28, T:0.09
Consensus pattern (13 bp):
GCCATGCGACACG
Found at i:98032046 original size:27 final size:27
Alignment explanation
Indices: 98032012--98032065 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
98032002 AGATATTTGA
* * *
98032012 GACTCTTGTGATCTGTGTAGATAGTAC
1 GACTCTTGTAACCTATGTAGATAGTAC
98032039 GACTCTTGTAACCTATGTAGATAGTAC
1 GACTCTTGTAACCTATGTAGATAGTAC
98032066 ACTTCTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (27 bp):
GACTCTTGTAACCTATGTAGATAGTAC
Found at i:98036433 original size:23 final size:23
Alignment explanation
Indices: 98036406--98036464 Score: 109
Period size: 23 Copynumber: 2.5 Consensus size: 23
98036396 ATGCAGTGGC
98036406 AAAATGTGAAAATGATGATGTAT
1 AAAATGTGAAAATGATGATGTAT
98036429 AAAATGTGAAAATGATGATGTAT
1 AAAATGTGAAAATGATGATGTAT
98036452 AAAATGTGCAAAA
1 AAAATGTG-AAAA
98036465 CAAAACAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 31 0.89
24 4 0.11
ACGTcount: A:0.51, C:0.02, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAATGTGAAAATGATGATGTAT
Found at i:98040191 original size:50 final size:50
Alignment explanation
Indices: 98040116--98040292 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
98040106 CCATGGCAAC
* * *
98040116 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGA
98040166 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGA
* *
98040216 AAGTGATAAGAGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGA
* * *
98040266 CAAGTAAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
98040293 CTGATCAGTG
Statistics
Matches: 117, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 95 0.81
51 22 0.19
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATGA
Found at i:98040326 original size:30 final size:31
Alignment explanation
Indices: 98040272--98040329 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
98040262 ATGACAAGTA
98040272 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
98040303 AAAAGTGGTAGCTTCGG-TACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
98040330 TCGACTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAGTG
Found at i:98040343 original size:45 final size:46
Alignment explanation
Indices: 98040289--98040375 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 46
98040279 GTAGCTTCGG
* * * *
98040289 CTACCTGATCAGTGAAAAGTGGTAGCTTCGG-TACCTGATCATCGA
1 CTACCTGATCAATCAAAAATGGTAGCTCCGGCTACCTGATCATCGA
*
98040334 CTACTTGATCAATCAAAAATGGTAGCTCCGGCTACCTGATCA
1 CTACCTGATCAATCAAAAATGGTAGCTCCGGCTACCTGATCA
98040376 GTGAATAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 26 0.72
46 10 0.28
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (46 bp):
CTACCTGATCAATCAAAAATGGTAGCTCCGGCTACCTGATCATCGA
Found at i:98045821 original size:22 final size:22
Alignment explanation
Indices: 98045793--98045837 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
98045783 TTTTCTTAAT
98045793 GTTCTTTAGTAGCTTGAAGAGG
1 GTTCTTTAGTAGCTTGAAGAGG
98045815 GTTCTTTAGTAGCTTGAAGAGG
1 GTTCTTTAGTAGCTTGAAGAGG
98045837 G
1 G
98045838 AATAAACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.33, T:0.36
Consensus pattern (22 bp):
GTTCTTTAGTAGCTTGAAGAGG
Found at i:98065322 original size:24 final size:24
Alignment explanation
Indices: 98065290--98065342 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
98065280 AAGTCTGTCA
98065290 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
98065314 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
98065338 GGAGA
1 GGAGA
98065343 ACAGTGTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.43, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:98066795 original size:27 final size:26
Alignment explanation
Indices: 98066755--98066892 Score: 186
Period size: 27 Copynumber: 5.2 Consensus size: 26
98066745 AGGAAGCATC
* *
98066755 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
98066782 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
98066809 CTGGTGGCTCTGCCACGATTATCTATT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
98066836 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * *
98066863 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
98066889 CTGG
1 CTGG
98066893 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
26 15 0.15
27 85 0.83
28 2 0.02
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:98096044 original size:16 final size:17
Alignment explanation
Indices: 98096023--98096057 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
98096013 TCTGGGTAAT
98096023 TTTTTAATCCTTT-CTG
1 TTTTTAATCCTTTCCTG
*
98096039 TTTTTAATCTTTTCCTG
1 TTTTTAATCCTTTCCTG
98096056 TT
1 TT
98096058 AAGATATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.66
Consensus pattern (17 bp):
TTTTTAATCCTTTCCTG
Found at i:98098723 original size:5 final size:5
Alignment explanation
Indices: 98098713--98098744 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
98098703 GTTTAAATCT
98098713 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT
98098745 CATTCTTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:98099900 original size:19 final size:19
Alignment explanation
Indices: 98099876--98099913 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
98099866 TACTTCAAAA
98099876 TTAATAAAAATTAAATATG
1 TTAATAAAAATTAAATATG
98099895 TTAATAAAAATTAAATATG
1 TTAATAAAAATTAAATATG
98099914 ATATATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
TTAATAAAAATTAAATATG
Found at i:98100193 original size:18 final size:17
Alignment explanation
Indices: 98100170--98100208 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
98100160 TTTGCCCCCC
* *
98100170 TTTTTTAAGGTTTAGGG
1 TTTTTTTAGGTTTAGGA
98100187 TTTTTTTAGGTTTAGGA
1 TTTTTTTAGGTTTAGGA
98100204 TTTTT
1 TTTTT
98100209 GGTGGGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (17 bp):
TTTTTTTAGGTTTAGGA
Found at i:98100388 original size:17 final size:17
Alignment explanation
Indices: 98100351--98100394 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
98100341 GGTTTCAAGT
98100351 TTTTTAG-GG-TTAGGG
1 TTTTTAGTGGTTTAGGG
98100366 -TTTTAGTGGTTTAGGG
1 TTTTTAGTGGTTTAGGG
98100382 TTTTTAGTGGTTT
1 TTTTTAGTGGTTT
98100395 TTAAGGGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.23
15 2 0.08
16 6 0.23
17 12 0.46
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (17 bp):
TTTTTAGTGGTTTAGGG
Found at i:98100446 original size:137 final size:138
Alignment explanation
Indices: 98100228--98100522 Score: 429
Period size: 137 Copynumber: 2.2 Consensus size: 138
98100218 TAGGGTTTAA
* * *
98100228 GGTTTTTAATGGTTTAGAG-TTTTAGGGTTTTTAAGGGAAAAATTAATGAACACTTAAAGTTGAG
1 GGTTTTGAGTGGTTTAGGGTTTTTAGGGTTTTTAAGGGAAAAATTAATGAACACTTAAAGTTGAG
*
98100292 GTTTAATTAATTAAATTAACTATGAGAATAAAAAAATTAATTAAATTAGGG-TTTCAAGTTTTTT
66 GTTTAATTAATTAAATTAACTATGAGAATAAAAAAATCAATTAAATTAGGGTTTTCAA-TTTTTT
*
98100356 AGGGTTA-G
130 AAGGTTAGG
* * *
98100364 GGTTTT-AGTGGTTTAGGGTTTTTAGTGGTTTTTAAGGGAGAAATTAATGAACATTTAGAGTTGA
1 GGTTTTGAGTGGTTTAGGGTTTTTAG-GGTTTTTAAGGGAAAAATTAATGAACACTTAAAGTTGA
*
98100428 GAG-TTAATTAATTAAATTAACTATGAGAATAAAAAAATCAATTAAATTAGGGTTTTGAATTTTT
65 G-GTTTAATTAATTAAATTAACTATGAGAATAAAAAAATCAATTAAATTAGGGTTTTCAATTTTT
98100492 TAAGGTTAGG
129 TAAGGTTAGG
* *
98100502 GGTTTTGATTGTTTTAGGGTT
1 GGTTTTGAGTGGTTTAGGGTT
98100523 AGGGTTTTAG
Statistics
Matches: 143, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
135 10 0.07
136 12 0.08
137 96 0.67
138 13 0.09
139 12 0.08
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (138 bp):
GGTTTTGAGTGGTTTAGGGTTTTTAGGGTTTTTAAGGGAAAAATTAATGAACACTTAAAGTTGAG
GTTTAATTAATTAAATTAACTATGAGAATAAAAAAATCAATTAAATTAGGGTTTTCAATTTTTTA
AGGTTAGG
Found at i:98100506 original size:24 final size:23
Alignment explanation
Indices: 98100474--98100530 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 23
98100464 ATCAATTAAA
98100474 TTAGGGTTTTGAATT-TTTTAAGG
1 TTAGGGTTTTG-ATTGTTTTAAGG
*
98100497 TTAGGGGTTTTGATTGTTTTAGGG
1 TTA-GGGTTTTGATTGTTTTAAGG
98100521 TTAGGGTTTT
1 TTAGGGTTTT
98100531 AGTGGTTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.53
Consensus pattern (23 bp):
TTAGGGTTTTGATTGTTTTAAGG
Found at i:98100538 original size:23 final size:24
Alignment explanation
Indices: 98100489--98100544 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 24
98100479 GTTTTGAATT
* *
98100489 TTTTAAGGTTAGGGGTTTTGATTG
1 TTTTAGGGTTAGGGGTTTTGATGG
98100513 TTTTAGGGTTA-GGGTTTT-AGTGG
1 TTTTAGGGTTAGGGGTTTTGA-TGG
98100536 -TTTAGGGTT
1 TTTTAGGGTT
98100545 TTTAGTGGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 10 0.34
23 9 0.31
24 10 0.34
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (24 bp):
TTTTAGGGTTAGGGGTTTTGATGG
Found at i:98100549 original size:17 final size:16
Alignment explanation
Indices: 98100512--98100555 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
98100502 GGTTTTGATT
98100512 GTTTTAG-GG-TTAGG
1 GTTTTAGTGGTTTAGG
98100526 GTTTTAGTGGTTTAGG
1 GTTTTAGTGGTTTAGG
98100542 GTTTTTAGTGGTTT
1 G-TTTTAGTGGTTT
98100556 TTAAGGGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.26
15 2 0.07
16 6 0.22
17 12 0.44
ACGTcount: A:0.11, C:0.00, G:0.36, T:0.52
Consensus pattern (16 bp):
GTTTTAGTGGTTTAGG
Found at i:98100787 original size:126 final size:126
Alignment explanation
Indices: 98100598--98101050 Score: 660
Period size: 126 Copynumber: 3.6 Consensus size: 126
98100588 AATGAACACA
* * * **
98100598 TTCAAGAATGATGCACTTTCAGCAAAATTTCGGAAAAAAGCTTCCATATGGACGCTCTTTTGCTA
1 TTCAAGAAGGATGCACTTTCAGCAAAATTTCAGAAAAAAGATTCCACGTGGACGCTCTTTTGCTA
*
98100663 CAGTGGTATCAGATAAAATAATTTTGAGAAGATGTTTATGAACAAATAGTGTTAAAAACGC
66 CAGTGGTATCAGATAAAATAATTTTGAGAAGATGTTTATGAACAAATAGTGTCAAAAACGC
* * *
98100724 TTCAAGAATGATGTACTTTCAGCAAAATTTCAGAAAAAAGATTCCACGTGAACGCTCTTTTGCTA
1 TTCAAGAAGGATGCACTTTCAGCAAAATTTCAGAAAAAAGATTCCACGTGGACGCTCTTTTGCTA
* * *
98100789 CAGTGGTATCTGAGAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCAAAAACGC
66 CAGTGGTATCAGATAAAATAATTTTGAGAAGATGTTTATGAACAAATAGTGTCAAAAACGC
** *
98100850 TTCAAGAAGGATGCACTTTCATTAAAATTTCAGAAAAAA-ACTCCTACGTGGACGCTCTTTTGCT
1 TTCAAGAAGGATGCACTTTCAGCAAAATTTCAGAAAAAAGATTCC-ACGTGGACGCTCTTTTGCT
* *
98100914 ACAGTGGTCT-ATGATAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGC
65 ACAGTGGTATCA-GATAAAATAATTTTGAGAAGATGTTTATGAACAAATAGTGTCAAAAACGC
* * * * *
98100976 TTCAAAAAGGATGCACTTTCAACAAAATTT-TGAAAAAAAGCTCCCACGTGGACGCTCTTTTGCT
1 TTCAAGAAGGATGCACTTTCAGCAAAATTTCAG-AAAAAAGATTCCACGTGGACGCTCTTTTGCT
98101040 ACAGTGGTATC
65 ACAGTGGTATC
98101051 TGAAAAAGCC
Statistics
Matches: 294, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
125 5 0.02
126 287 0.98
127 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (126 bp):
TTCAAGAAGGATGCACTTTCAGCAAAATTTCAGAAAAAAGATTCCACGTGGACGCTCTTTTGCTA
CAGTGGTATCAGATAAAATAATTTTGAGAAGATGTTTATGAACAAATAGTGTCAAAAACGC
Found at i:98106834 original size:23 final size:23
Alignment explanation
Indices: 98106808--98106852 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
98106798 TGGGTATGTG
*
98106808 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
98106831 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
98106853 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:98109449 original size:22 final size:22
Alignment explanation
Indices: 98109402--98109450 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
98109392 AACACAGCTT
98109402 TTTTG-CAAAAATAAGAGACAA
1 TTTTGACAAAAATAAGAGACAA
* *
98109423 CTTTGACAAAAATTGAGAGA-AA
1 TTTTGACAAAAA-TAAGAGACAA
98109445 TTTTGA
1 TTTTGA
98109451 GAGAATTTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.17
22 13 0.57
23 6 0.26
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (22 bp):
TTTTGACAAAAATAAGAGACAA
Found at i:98118023 original size:17 final size:17
Alignment explanation
Indices: 98117993--98118039 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
98117983 ACATGACTAG
* *
98117993 ATTTTATATGATTTTCT
1 ATTTTTTATAATTTTCT
98118010 ATTTTTTATAATTTTCT
1 ATTTTTTATAATTTTCT
98118027 A--TTTTATAATTTT
1 ATTTTTTATAATTTT
98118040 ATATAGGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 12 0.43
17 16 0.57
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (17 bp):
ATTTTTTATAATTTTCT
Found at i:98118065 original size:7 final size:7
Alignment explanation
Indices: 98118053--98118087 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
98118043 TAGGTAAATT
98118053 TATTTTA
1 TATTTTA
98118060 TATTTTA
1 TATTTTA
98118067 TATTTTA
1 TATTTTA
*
98118074 TAATTTA
1 TATTTTA
98118081 T-TTTTA
1 TATTTTA
98118087 T
1 T
98118088 CTTAAATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATTTTA
Found at i:98120044 original size:3 final size:3
Alignment explanation
Indices: 98120032--98120319 Score: 134
Period size: 3 Copynumber: 95.7 Consensus size: 3
98120022 GTTATTTTGC
* * *
98120032 TAT T-T TAT TAT TAA AAT TGAT TTAT T-T TAT T-T TAT TTT TAAT T-T
1 TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT T-AT TAT
* *
98120076 TAT TAT TAT T-T CTAT TAT TAT TAT TACT T-T TAT TCT T-T TAT TAC
1 TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
* * * * * * *
98120120 TAT TAT TGT TAC GAT T-T CTCT TGT TGT TTT TAT TAT TAT T-T ATAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * *
98120165 TAT TGT TAG TAT TAT TAT TAT TAT TCCT TAT T-T TAT TAT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * *
98120210 CTAT TAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TCT TAT TAAT GTAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT
* * *
98120257 TAT TAT TAT TAT TTT CTACT TCAT TAT TAT TA- TAT TAT TAC TAT TGT
1 TAT TAT TAT TAT TAT -TA-T T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* *
98120304 TAT CAT CA- TAT TAT TA
1 TAT TAT TAT TAT TAT TA
98120320 AACTAATTAA
Statistics
Matches: 218, Mismatches: 40, Indels: 54
0.70 0.13 0.17
Matches are distributed among these distances:
2 22 0.10
3 169 0.78
4 23 0.11
5 4 0.02
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:98120240 original size:23 final size:23
Alignment explanation
Indices: 98120149--98120269 Score: 95
Period size: 23 Copynumber: 5.3 Consensus size: 23
98120139 CTTGTTGTTT
* * *
98120149 TTATTATTATTTATATTATTGTTA
1 TTATTATTATTAATA-TACTATTA
* * * *
98120173 GTATTATTATTATTATTC-CTTA
1 TTATTATTATTAATATACTATTA
* *
98120195 TT-TTATTATT-ATTTTCTATTA
1 TTATTATTATTAATATACTATTA
*
98120216 TTGTTATTATTAATATACTATTA
1 TTATTATTATTAATATACTATTA
* * *
98120239 TTATTCTTATTAATGTATTATTA
1 TTATTATTATTAATATACTATTA
98120262 TTATTATT
1 TTATTATT
98120270 TTCTACTTCA
Statistics
Matches: 77, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
20 4 0.05
21 13 0.17
22 12 0.16
23 36 0.47
24 12 0.16
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (23 bp):
TTATTATTATTAATATACTATTA
Found at i:98120264 original size:49 final size:49
Alignment explanation
Indices: 98120147--98120266 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 49
98120137 CTCTTGTTGT
* * * *
98120147 TTTTATTATTATT-TATATTATTGTTAGTATTATTATTATTATTCCTTA
1 TTTTATTATTATTATCTATTATTGTTAGTATTAATATTACTATTCATTA
* *
98120195 TTTTATTATTATTTTCTATTATTGTTATTATTAATA-TACTATT-ATTA
1 TTTTATTATTATTATCTATTATTGTTAGTATTAATATTACTATTCATTA
98120242 TTCTTATTAATGTATTAT-TATTATT
1 TT-TTATT-AT-TATTATCTATTATT
98120267 ATTTTCTACT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
47 5 0.08
48 24 0.39
49 28 0.45
50 5 0.08
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.64
Consensus pattern (49 bp):
TTTTATTATTATTATCTATTATTGTTAGTATTAATATTACTATTCATTA
Done.