Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 301 of 356
Found at i:98126512 original size:32 final size:32
Alignment explanation
Indices: 98126475--98126535 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
98126465 CTTACCATGC
98126475 CCATCATCCATTAACTATTAAAATGCTAATGT
1 CCATCATCCATTAACTATTAAAATGCTAATGT
98126507 CCATCATCCATTAACTATTAAAATGCTAA
1 CCATCATCCATTAACTATTAAAATGCTAA
98126536 AATGCATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (32 bp):
CCATCATCCATTAACTATTAAAATGCTAATGT
Found at i:98126555 original size:32 final size:32
Alignment explanation
Indices: 98126475--98126556 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
98126465 CTTACCATGC
* **
98126475 CCATCATCCATTAACTATTAAAATGCTAATGT
1 CCATCATCCATCAACTATTAAAATGCTAAAAT
*
98126507 CCATCATCCATTAACTATTAAAATGCTAAAAT
1 CCATCATCCATCAACTATTAAAATGCTAAAAT
* *
98126539 GCATACAT-TATCAACTAT
1 CCAT-CATCCATCAACTAT
98126557 CCATCACATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 41 0.93
33 3 0.07
ACGTcount: A:0.40, C:0.22, G:0.05, T:0.33
Consensus pattern (32 bp):
CCATCATCCATCAACTATTAAAATGCTAAAAT
Found at i:98132109 original size:44 final size:44
Alignment explanation
Indices: 98132059--98132699 Score: 314
Period size: 44 Copynumber: 13.8 Consensus size: 44
98132049 GACGGTGAAT
* * *
98132059 CTTATCTCCCTGAAGTTGCAGTGGATTAGATTAAAGCCACGAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAAC
*
98132103 CTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCTACAAATTACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC--C-----ACAAAC
* *
98132154 CTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAAC
** * ** * **
98132198 CTTATCTTTCTGAAGTTGCAGTGGGGTA-AGTTGAAGTTATAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTGAAGCCACAAAC
* * * * * ** * *
98132242 CTTATCTCCCTAAAGTTGTAGTGGAGCA-AGCTAAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTGAAGCCA-CAAAC
* * **
98132287 CTTATCTCTCTGAAGTTACAGTGGAACAGATTGAAGCTACAAATCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG---C----CACAAAC
* * * ** **
98132338 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAAC
* ** * ** * *
98132382 TTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCA-CAAAC
*
98132427 CTTATCTCCATGAAGTTGCAGTGGAGTAGATTGAAGCTACAAATCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG---C----CACAAAC
* * * ** **
98132478 CTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAAC
* * ** * *
98132522 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAGAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCA-CAAAC
* * * *
98132567 CTTATCTCTCTGAAGTTACAGTGAAGTAGATTGAAGCTACAAATCACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG---C----CACAAAC
* * * * ** * *
98132618 CTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCA-CAAAC
* * * *
98132663 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
98132700 TATAAATCCT
Statistics
Matches: 458, Mismatches: 105, Indels: 67
0.73 0.17 0.11
Matches are distributed among these distances:
43 1 0.00
44 178 0.39
45 131 0.29
46 2 0.00
49 1 0.00
51 142 0.31
52 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACAAAC
Found at i:98132387 original size:140 final size:140
Alignment explanation
Indices: 98132191--98132692 Score: 706
Period size: 140 Copynumber: 3.6 Consensus size: 140
98132181 AGATTGAAGC
** * * * * *
98132191 CACAAACCTTATCTTTCTGAAGTTGCAGTGGGGTAAGTTGAAGTTATAAGTCTTATCTCCCTAAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * *
98132256 GTTGTAGTGGAGCA-AGCTAAAGATAGCGAATCTTATCTCTCTGAAGTTACAGTGGAACAGATTG
66 GTTGCAGTGGAGCAGA-CTGAAGATAGCGAATCTTATCTCTCTGAAGTTACAGTGGAATAGATTG
98132320 AAGCTACAAAT
130 AAGCTACAAAT
* *
98132331 CACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTTTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
* * *
98132396 GTTGCAGTGGAACAGACTGAAGATAGCGAATCTTATCTC-CATGAAGTTGCAGTGGAGTAGATTG
66 GTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCTC-TGAAGTTACAGTGGAATAGATTG
98132460 AAGCTACAAAT
130 AAGCTACAAAT
*
98132471 CACAAACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
*
98132536 GTTGCAGTGGAGCAGACTGAAGAGAGCGAATCTTATCTCTCTGAAGTTACAGT-GAAGTAGATTG
66 GTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCTCTGAAGTTACAGTGGAA-TAGATTG
98132600 AAGCTACAAAT
130 AAGCTACAAAT
* * *** * *
98132611 CACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAA-TCTTATCTCTCTG
1 CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-C-AAGTCTTATCTCCCTG
*
98132675 AAGTTGCAGTAGAGCAGA
64 AAGTTGCAGTGGAGCAGA
98132693 TTAAAGCTAT
Statistics
Matches: 327, Mismatches: 29, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
139 3 0.01
140 290 0.89
141 32 0.10
142 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (140 bp):
CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAA
GTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATCTCTCTGAAGTTACAGTGGAATAGATTGA
AGCTACAAAT
Found at i:98134359 original size:3 final size:3
Alignment explanation
Indices: 98134347--98134640 Score: 137
Period size: 3 Copynumber: 98.7 Consensus size: 3
98134337 GTTATTTTGC
* * *
98134347 TAT T-T TAT TAT TAA AAT TGAT TAAT T-T TAT T-T TAT TGT TAAT T-T
1 TAT TAT TAT TAT TAT TAT T-AT T-AT TAT TAT TAT TAT TAT T-AT TAT
** * *
98134391 TAT TAT TAT TGC CAT TAT TAT TAT TAT TACT T-T TAT TCT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * * * * * *
98134435 TAC TAT TAT TGT TAC GAT T-T CTCT TGT TGT TTT TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* *
98134479 ATAT TAT TGT TAT TAT TAT TAT TAT TCCT TAT T-T TAT TAT TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT
* * * * * *
98134525 TTT CTAT TAT TGT TAT TAT TAA TA- TAC TAT TAT TAT TCT GAT TAAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* *
98134571 GTAT TAT TAT TAT TAT TAT TAT TTT CTAC T-T TAT TAT TA- TAT TAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * *
98134616 TAC TAT TGT TAT CAT CA- TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
98134641 AACTAATTAA
Statistics
Matches: 219, Mismatches: 49, Indels: 46
0.70 0.16 0.15
Matches are distributed among these distances:
2 22 0.10
3 175 0.80
4 21 0.10
5 1 0.00
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:98139522 original size:23 final size:21
Alignment explanation
Indices: 98139491--98139546 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 21
98139481 CTTGCTTTTA
*
98139491 TATTCTATATTGTAAAATTATTT
1 TATTATATATT-TAAAATTA-TT
*
98139514 TATTATATATATTAATATTATT
1 TATTATATAT-TTAAAATTATT
*
98139536 TATTATCTATT
1 TATTATATATT
98139547 ATTTTTCACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 11 0.38
23 16 0.55
24 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTATATATTTAAAATTATT
Found at i:98139596 original size:34 final size:35
Alignment explanation
Indices: 98139507--98139619 Score: 104
Period size: 37 Copynumber: 3.1 Consensus size: 35
98139497 ATATTGTAAA
* *
98139507 ATTATTTTATTATATATATTAATATTA-TTTATTATCT
1 ATTATTTT-TTATAT-TATTATTATTATTTTA-CATCT
* *
98139544 ATTATTTTTCACAAATTATTATTATTATTTTACATC-
1 ATTATTTTT--TATATTATTATTATTATTTTACATCT
* * *
98139580 ATTATTTTTTATATTATTATTATAATTTTACTTGT
1 ATTATTTTTTATATTATTATTATTATTTTACATCT
98139615 ATTAT
1 ATTAT
98139620 ATATTTATTA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
34 20 0.32
35 5 0.08
36 10 0.16
37 21 0.33
38 7 0.11
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (35 bp):
ATTATTTTTTATATTATTATTATTATTTTACATCT
Found at i:98139629 original size:34 final size:34
Alignment explanation
Indices: 98139558--98139635 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
98139548 TTTTTCACAA
* * *
98139558 ATTATTATTATTATTTTACATCATTATTTTTTAT
1 ATTATTATTATAATTTTACATCATTATATATTAT
* *
98139592 ATTATTATTATAATTTTACTTGTATTATATATT-T
1 ATTATTATTATAATTTTACAT-CATTATATATTAT
98139626 ATTAATTATT
1 ATT-ATTATT
98139636 TATATATATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 23 0.62
35 14 0.38
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (34 bp):
ATTATTATTATAATTTTACATCATTATATATTAT
Found at i:98139941 original size:19 final size:19
Alignment explanation
Indices: 98139915--98139978 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 19
98139905 TAAATTATTA
98139915 ATTA-TTTATTTATTATGT
1 ATTATTTTATTTATTATGT
**
98139933 ATTATTTTACTTTAAAATG-
1 ATTATTTTA-TTTATTATGT
*
98139952 A-TATTTT-TATATTATGT
1 ATTATTTTATTTATTATGT
*
98139969 GTTATTTTAT
1 ATTATTTTAT
98139979 AAATTCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
16 6 0.17
18 16 0.46
19 6 0.17
20 7 0.20
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (19 bp):
ATTATTTTATTTATTATGT
Found at i:98140312 original size:33 final size:33
Alignment explanation
Indices: 98140273--98140342 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
98140263 TTGTATTACT
*
98140273 CTTTTTTGTATATCATGCATTATTTAATTTTTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
98140306 CTTTTTTGTATATCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
98140339 CTTT
1 CTTT
98140343 GTATGTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.60
Consensus pattern (33 bp):
CTTTTTTGTATATCATGCATTATTTAATTATTA
Found at i:98142998 original size:3 final size:3
Alignment explanation
Indices: 98142992--98143023 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
98142982 TTTTTTTTTG
98142992 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
98143024 GGAGGAATTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:98145566 original size:11 final size:11
Alignment explanation
Indices: 98145550--98145592 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
98145540 TAGAATATAT
98145550 CCCATACCTTG
1 CCCATACCTTG
*
98145561 CCCATACCTTT
1 CCCATACCTTG
*
98145572 CCCATACC-TA
1 CCCATACCTTG
98145582 CCCATACCTTG
1 CCCATACCTTG
98145593 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:98145577 original size:22 final size:21
Alignment explanation
Indices: 98145549--98145591 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
98145539 TTAGAATATA
*
98145549 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
98145571 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
98145592 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:98146176 original size:36 final size:36
Alignment explanation
Indices: 98146129--98146217 Score: 151
Period size: 36 Copynumber: 2.5 Consensus size: 36
98146119 ACCGTTTATG
*
98146129 GTACTATTCACGTATACGGCACTATTTACGTATACA
1 GTACTATTCACGTATACGGCACTATTCACGTATACA
*
98146165 GTACTATTCACGTATACGGCACTATTCACGTATATA
1 GTACTATTCACGTATACGGCACTATTCACGTATACA
*
98146201 GTACTGTTCACGTATAC
1 GTACTATTCACGTATAC
98146218 AGTAGTTGGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (36 bp):
GTACTATTCACGTATACGGCACTATTCACGTATACA
Found at i:98146221 original size:18 final size:18
Alignment explanation
Indices: 98146129--98146221 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
98146119 ACCGTTTATG
*
98146129 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
98146147 GCACTATTTACGTATACA
1 GTACTATTCACGTATACA
*
98146165 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
98146183 GCACTATTCACGTATATA
1 GTACTATTCACGTATACA
*
98146201 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
98146219 GTA
1 GTA
98146222 GTTGGGATTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 63 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:98150280 original size:11 final size:11
Alignment explanation
Indices: 98150264--98150306 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
98150254 TAGAATATAT
98150264 CCCATACCTTG
1 CCCATACCTTG
*
98150275 CCCATACCTTT
1 CCCATACCTTG
*
98150286 CCCATACC-TA
1 CCCATACCTTG
98150296 CCCATACCTTG
1 CCCATACCTTG
98150307 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:98150291 original size:22 final size:21
Alignment explanation
Indices: 98150263--98150305 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
98150253 TTAGAATATA
*
98150263 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
98150285 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
98150306 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:98155309 original size:27 final size:27
Alignment explanation
Indices: 98155270--98155323 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
98155260 AATTTTTATA
*
98155270 ATTAATAAATATT-TTAATTAAATATTT
1 ATTAATAAATATTATTAA-CAAATATTT
**
98155297 ATTAATATTTATTATTAACAAATATTT
1 ATTAATAAATATTATTAACAAATATTT
98155324 GAATTAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTAATAAATATTATTAACAAATATTT
Found at i:98155322 original size:13 final size:13
Alignment explanation
Indices: 98155270--98155322 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
98155260 AATTTTTATA
98155270 ATTAATAAATATT
1 ATTAATAAATATT
98155283 -TTAATTAAATATTT
1 ATTAA-TAAATA-TT
**
98155297 ATTAATATTTATT
1 ATTAATAAATATT
*
98155310 ATTAACAAATATT
1 ATTAATAAATATT
98155323 TGAATTAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
12 4 0.12
13 18 0.56
14 6 0.19
15 4 0.12
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTAATAAATATT
Found at i:98156202 original size:26 final size:24
Alignment explanation
Indices: 98156163--98156219 Score: 60
Period size: 26 Copynumber: 2.3 Consensus size: 24
98156153 GCAATTAACT
* *
98156163 TTTTCACTAATTATTAAATAAATCAA
1 TTTTCATTAATTATGAAA-AAAT-AA
*
98156189 TTTTCATTACTTATGAAAAAATAA
1 TTTTCATTAATTATGAAAAAATAA
*
98156213 CTTTCAT
1 TTTTCAT
98156220 AAAAATGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 8 0.30
25 4 0.15
26 15 0.56
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (24 bp):
TTTTCATTAATTATGAAAAAATAA
Found at i:98163458 original size:27 final size:26
Alignment explanation
Indices: 98163418--98163468 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
98163408 AATACTTATA
98163418 TTTATATAATTAAAATAT-TCATATT
1 TTTATATAATTAAAATATGTCATATT
98163443 TTTATACTAGATTAAAATATGTCATA
1 TTTATA-TA-ATTAAAATATGTCATA
98163469 AGTCCTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.26
26 2 0.09
27 10 0.43
28 5 0.22
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (26 bp):
TTTATATAATTAAAATATGTCATATT
Found at i:98163877 original size:15 final size:15
Alignment explanation
Indices: 98163822--98163932 Score: 70
Period size: 15 Copynumber: 7.5 Consensus size: 15
98163812 TTTATACTAC
*
98163822 AAAATATTTACTATT
1 AAAATATTTATTATT
* *
98163837 AATATATTTATAATTGT
1 AAAATATTTATTA-T-T
98163854 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
*
98163871 AAAATA-TTAATA-T
1 AAAATATTTATTATT
** * *
98163884 GGAATATTTTTTAAT
1 AAAATATTTATTATT
98163899 AAAATA-TTATT-TT
1 AAAATATTTATTATT
*
98163912 TAAA-ATTTATTATT
1 AAAATATTTATTATT
98163926 AAAATAT
1 AAAATAT
98163933 ATTTTATAAG
Statistics
Matches: 71, Mismatches: 16, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
12 1 0.01
13 14 0.20
14 18 0.25
15 22 0.31
16 2 0.03
17 2 0.03
18 2 0.03
19 10 0.14
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.50
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:98163890 original size:28 final size:27
Alignment explanation
Indices: 98163858--98163932 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
98163848 AATTGTAATA
98163858 AATATTTATTATTAAAATATTAATATGG
1 AATATTTATTATTAAAATATT-ATATGG
* * * **
98163886 AATATTTTTTAATAAAATATTATTTTT
1 AATATTTATTATTAAAATATTATATGG
*
98163913 AAAATTTATTATTAAAATAT
1 AATATTTATTATTAAAATAT
98163933 ATTTTATAAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
AATATTTATTATTAAAATATTATATGG
Found at i:98163927 original size:13 final size:13
Alignment explanation
Indices: 98163856--98163935 Score: 61
Period size: 14 Copynumber: 5.8 Consensus size: 13
98163846 ATAATTGTAA
98163856 TAAATATTTATTAT
1 TAAA-ATTTATTAT
*
98163870 TAAAATATTAATAT
1 TAAAAT-TTATTAT
* * * *
98163884 GGAATATTTTTTAA
1 -TAAAATTTATTAT
*
98163898 TAAAATATTATTTT
1 TAAAAT-TTATTAT
98163912 TAAAATTTATTAT
1 TAAAATTTATTAT
*
98163925 TAAAATATATT
1 TAAAATTTATT
98163936 TTATAAGAAG
Statistics
Matches: 50, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
13 22 0.44
14 24 0.48
15 4 0.08
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
TAAAATTTATTAT
Found at i:98174269 original size:46 final size:44
Alignment explanation
Indices: 98174165--98174272 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
98174155 TGTCTTTGAC
** * * **
98174165 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATATATAAT
* *
98174209 ATGGAATTACATGGCTCAATCCTGTCTCCAAAACCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATA--TATAAT
98174255 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
98174273 TTTCTGTTCT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 31 0.58
46 22 0.42
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATATATAAT
Found at i:98192442 original size:25 final size:25
Alignment explanation
Indices: 98192412--98192471 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
98192402 TCATAGCTCG
98192412 TGTGAGCATTTA-CAGTCACAAATCA
1 TGTGAGCATTTATC-GTCACAAATCA
* ** *
98192437 TGTGAGAATTTATCGTCACAGCTTA
1 TGTGAGCATTTATCGTCACAAATCA
98192462 TGTGAGCATT
1 TGTGAGCATT
98192472 GTTCTCGCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (25 bp):
TGTGAGCATTTATCGTCACAAATCA
Found at i:98192892 original size:18 final size:17
Alignment explanation
Indices: 98192851--98192892 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
98192841 AAATGTTGAG
98192851 TTTT-AATAGCTAAAAA
1 TTTTAAATAGCTAAAAA
* *
98192867 TATTAAATAGCTATAGAA
1 TTTTAAATAGCTA-AAAA
98192885 TTTTAAAT
1 TTTTAAAT
98192893 TGGAGGTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 8 0.38
18 10 0.48
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.40
Consensus pattern (17 bp):
TTTTAAATAGCTAAAAA
Found at i:98193912 original size:25 final size:25
Alignment explanation
Indices: 98193867--98193931 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
98193857 TCCAGCTCTT
* *
98193867 ATGAGCTTCCCCGATACTCAGGTCGC
1 ATGAGCTT-CCCGTTACTCAGCTCGC
* * *
98193893 ATGAGCTTCCCGTTATTCAGCTTGG
1 ATGAGCTTCCCGTTACTCAGCTCGC
*
98193918 ATGAGCTTACCGTT
1 ATGAGCTTCCCGTT
98193932 TATAACTCGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 25 0.76
26 8 0.24
ACGTcount: A:0.18, C:0.28, G:0.23, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACTCAGCTCGC
Found at i:98196699 original size:142 final size:142
Alignment explanation
Indices: 98196525--98196801 Score: 441
Period size: 142 Copynumber: 2.0 Consensus size: 142
98196515 TGAATAATGA
*
98196525 ATGACTATTTATAATTGATGATTAAATTAAATTTTAAATTTTAATGATATATTATTTGAACTGTT
1 ATGACTATTTATAATTGATGATTAAATTAAATTCTAAATTTTAATGATATATTATTTGAACTGTT
* * *
98196590 AATTGTCGTAGCA-TCCTGTAACCCTAATTCA-GCAACAGAGATGGGTTCAAGGTGTTATGAACC
66 AATTATCGTAGCATTCC-GTAACCCTAA-TCAGGCAACAGAGACGGGTTCAAGGTGTTACGAACC
98196653 CAATCCCCGGAGAT
129 CAATCCCCGGAGAT
*
98196667 ATGACTATTTATAATTGATGATTAAATTAAATTCTAAATTTTAATGATATATTATTTGAATTGTT
1 ATGACTATTTATAATTGATGATTAAATTAAATTCTAAATTTTAATGATATATTATTTGAACTGTT
* ** *
98196732 AATTATCGTAGCATTCCGTAACCCTAATCAGGCGACAGAGACGGGTTCGGGGTGTTACGAACCTA
66 AATTATCGTAGCATTCCGTAACCCTAATCAGGCAACAGAGACGGGTTCAAGGTGTTACGAACCCA
98196797 ATCCC
131 ATCCC
98196802 AAGAGATCGA
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
141 3 0.02
142 118 0.95
143 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (142 bp):
ATGACTATTTATAATTGATGATTAAATTAAATTCTAAATTTTAATGATATATTATTTGAACTGTT
AATTATCGTAGCATTCCGTAACCCTAATCAGGCAACAGAGACGGGTTCAAGGTGTTACGAACCCA
ATCCCCGGAGAT
Found at i:98205456 original size:11 final size:11
Alignment explanation
Indices: 98205442--98205468 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98205432 AAAGAGTAAG
98205442 AAACGAGCCAA
1 AAACGAGCCAA
98205453 AAACGAGCCAA
1 AAACGAGCCAA
98205464 AAACG
1 AAACG
98205469 GACAAAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.26, G:0.19, T:0.00
Consensus pattern (11 bp):
AAACGAGCCAA
Found at i:98213295 original size:13 final size:14
Alignment explanation
Indices: 98213271--98213299 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
98213261 TCTTCATTTC
98213271 TTTTACTTTCTTTA
1 TTTTACTTTCTTTA
98213285 TTTTA-TTTCTTTA
1 TTTTACTTTCTTTA
98213298 TT
1 TT
98213300 CATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTACTTTCTTTA
Found at i:98226544 original size:5 final size:5
Alignment explanation
Indices: 98226504--98226528 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
98226494 CTATATGGAT
98226504 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
98226529 CCACTGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:98227517 original size:36 final size:36
Alignment explanation
Indices: 98227470--98227543 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
98227460 GTCGTAAGCT
*
98227470 TTACTCATGTCAAGCTTTACTGCCATATATCTTTTC
1 TTACTCATGTCAAGCTTTACTGCCATATATCCTTTC
98227506 TTACTCATGTCAAGCTTTACTGCCATATATCCTTTC
1 TTACTCATGTCAAGCTTTACTGCCATATATCCTTTC
98227542 TT
1 TT
98227544 CCCTATTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.22, C:0.26, G:0.08, T:0.45
Consensus pattern (36 bp):
TTACTCATGTCAAGCTTTACTGCCATATATCCTTTC
Found at i:98231228 original size:41 final size:41
Alignment explanation
Indices: 98231183--98231261 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
98231173 TTGAAGCATA
*
98231183 AGAATAGAATTATTAAACGTCACTTGATATCTTAAAATATG
1 AGAATAGAATTATTAAACGTCACTTGATATCCTAAAATATG
*
98231224 AGAATAGAATTATTAAATGTCACTTGATATCCTAAAAT
1 AGAATAGAATTATTAAACGTCACTTGATATCCTAAAAT
98231262 TCAAATTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (41 bp):
AGAATAGAATTATTAAACGTCACTTGATATCCTAAAATATG
Found at i:98241552 original size:78 final size:78
Alignment explanation
Indices: 98241465--98241619 Score: 283
Period size: 78 Copynumber: 2.0 Consensus size: 78
98241455 AAGCGTAGTG
*
98241465 GTTGGTTTAAAAAGAGGAAAAGATTTTGTGATTAAGCAATTGATGTGTCAGCAGGTAAATGTCAA
1 GTTGGTTTAAAAAGAGGAAAAGATTTTATGATTAAGCAATTGATGTGTCAGCAGGTAAATGTCAA
98241530 GGACAAAATTTCA
66 GGACAAAATTTCA
*
98241543 GTTGGTTTAAAAAGAGGAAAAGATTTTATGATTAAGCAATTGATTTGTCAGCAGGTAAATGTCAA
1 GTTGGTTTAAAAAGAGGAAAAGATTTTATGATTAAGCAATTGATGTGTCAGCAGGTAAATGTCAA
*
98241608 GGACGAAATTTC
66 GGACAAAATTTC
98241620 TTTAAGGAGA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (78 bp):
GTTGGTTTAAAAAGAGGAAAAGATTTTATGATTAAGCAATTGATGTGTCAGCAGGTAAATGTCAA
GGACAAAATTTCA
Found at i:98244242 original size:18 final size:18
Alignment explanation
Indices: 98244201--98244236 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
98244191 CATTCCGAAG
* *
98244201 TATATATATATATACATA
1 TATATGTATATATACACA
98244219 TATATGTATATATACACA
1 TATATGTATATATACACA
98244237 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:98244748 original size:27 final size:27
Alignment explanation
Indices: 98244717--98244894 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
98244707 TAAATTGTAC
98244717 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
98244744 TGCACTAAGTGTGCGAAGTGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98244770 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
98244798 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
98244826 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98244853 ACCACTAAGTGTGCGAGTTGA-TCATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
98244880 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98244895 GACTCAATAT
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 102 0.81
28 23 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:98244885 original size:82 final size:81
Alignment explanation
Indices: 98244714--98244894 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
98244704 GATTAAATTG
* * *
98244714 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAGTGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATCCACTAA
98244779 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
98244795 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TACCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGAT-CCACT
* *
98244859 AAGTGTGCGAGTTGATCA
64 AAGTGTGCGAATTGACCA
* *
98244877 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98244895 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAGTGAATACGATCCACTAA
GTGTGCGAATTGACCA
Found at i:98260254 original size:35 final size:38
Alignment explanation
Indices: 98260180--98260251 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
98260170 TTAATTCATA
* *
98260180 TAATAATAATTATATTAAGAATGTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATT
* *
98260218 TAATAATTATTATTTTAA-AATATGATTAAATTAT
1 TAATAATAATTATATTAAGAATATGATTAAATTAT
98260252 TTATTATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 14 0.47
38 16 0.53
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (38 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATT
Found at i:98260485 original size:16 final size:17
Alignment explanation
Indices: 98260464--98260534 Score: 80
Period size: 16 Copynumber: 4.4 Consensus size: 17
98260454 TGAATTACTG
98260464 ATTACAGCCT-TATTTC-
1 ATTACAGCCTCTA-TTCA
98260480 ATTACAG-CTCTATTCA
1 ATTACAGCCTCTATTCA
*
98260496 ATTACA-ACTCTATTCA
1 ATTACAGCCTCTATTCA
*
98260512 ATTACAGCCT-TATTCC
1 ATTACAGCCTCTATTCA
98260528 ATTACAG
1 ATTACAG
98260535 TGAACCAAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.10
16 42 0.86
17 2 0.04
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTACAGCCTCTATTCA
Found at i:98264293 original size:41 final size:41
Alignment explanation
Indices: 98264236--98264318 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
98264226 TCAATTTCGT
98264236 TACCTAATCTATACCCATACTTTAAAAATATCCCAAAATAA
1 TACCTAATCTATACCCATACTTTAAAAATATCCCAAAATAA
*
98264277 TACCTAATCTATACCCATACTTTAAAACTATCCCAAAATAA
1 TACCTAATCTATACCCATACTTTAAAAATATCCCAAAATAA
98264318 T
1 T
98264319 GGGATTATAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (41 bp):
TACCTAATCTATACCCATACTTTAAAAATATCCCAAAATAA
Found at i:98268648 original size:64 final size:64
Alignment explanation
Indices: 98268547--98268675 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
98268537 ACATGTATTC
98268547 ATAATTTTGGCATGAATAAAAACACCAAAGCAATTCACGCACATACATGTATTCATAATCAAAT
1 ATAATTTTGGCATGAATAAAAACACCAAAGCAATTCACGCACATACATGTATTCATAATCAAAT
98268611 ATAATTTTGGCATGAATAAAAACACCAAAGCAATTCACGCACATACATGTATTCATAATCAAAT
1 ATAATTTTGGCATGAATAAAAACACCAAAGCAATTCACGCACATACATGTATTCATAATCAAAT
98268675 A
1 A
98268676 GAAAAACTTA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.26
Consensus pattern (64 bp):
ATAATTTTGGCATGAATAAAAACACCAAAGCAATTCACGCACATACATGTATTCATAATCAAAT
Found at i:98269990 original size:22 final size:22
Alignment explanation
Indices: 98269942--98269991 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
98269932 AAGTCCATAA
*
98269942 AATTAAAAAAGAAAAATGAATC
1 AATTCAAAAAGAAAAATGAATC
*
98269964 AATTCAAAAATAATAAA-GAATC
1 AATTCAAAAAGAA-AAATGAATC
98269986 AATTCA
1 AATTCA
98269992 TTCTCAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.64, C:0.08, G:0.06, T:0.22
Consensus pattern (22 bp):
AATTCAAAAAGAAAAATGAATC
Found at i:98272340 original size:31 final size:31
Alignment explanation
Indices: 98272295--98272353 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
98272285 AACCCTTCAT
*
98272295 GCATTAAATCCAACCAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
98272326 GCATGAAATGCAACCAAAAACAGCAAAT
1 GCATGAAATCCAACCAAAAACAGCAAAT
98272354 TTAACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.54, C:0.22, G:0.10, T:0.14
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:98272633 original size:21 final size:21
Alignment explanation
Indices: 98272609--98272651 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
98272599 TCTATTGCCA
98272609 TCGCTACTACCT-CTGCCTCCC
1 TCGCTACTA-CTGCTGCCTCCC
*
98272630 TCGCTGCTACTGCTGCCTCCC
1 TCGCTACTACTGCTGCCTCCC
98272651 T
1 T
98272652 TGCTGCTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.07, C:0.49, G:0.14, T:0.30
Consensus pattern (21 bp):
TCGCTACTACTGCTGCCTCCC
Found at i:98275805 original size:17 final size:17
Alignment explanation
Indices: 98275783--98275815 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
98275773 GATATGATAC
98275783 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
98275800 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
98275816 AATCCGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:98275816 original size:18 final size:17
Alignment explanation
Indices: 98275783--98275816 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
98275773 GATATGATAC
*
98275783 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
98275800 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
98275817 ATCCGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:98276161 original size:35 final size:37
Alignment explanation
Indices: 98276103--98276197 Score: 140
Period size: 35 Copynumber: 2.5 Consensus size: 37
98276093 ATAAAATCAT
98276103 ATATTCTAAGATTGCATATCATATCTAAGATTGCA-ATC
1 ATATT-TAAGATTG-ATATCATATCTAAGATTGCATATC
98276141 ATATTTAAGATTG-TATCATATCTAAGATTGCATATC
1 ATATTTAAGATTGATATCATATCTAAGATTGCATATC
*
98276177 ATATCTAAGATTGCATATCAT
1 ATATTTAAGATTG-ATATCAT
98276198 TGAAGATTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
35 19 0.36
36 15 0.28
37 8 0.15
38 11 0.21
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.39
Consensus pattern (37 bp):
ATATTTAAGATTGATATCATATCTAAGATTGCATATC
Found at i:98276205 original size:17 final size:19
Alignment explanation
Indices: 98276107--98276197 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
98276097 AATCATATAT
98276107 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98276126 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
98276144 TTTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98276161 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98276180 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98276198 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 15 0.22
19 37 0.55
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98276532 original size:14 final size:14
Alignment explanation
Indices: 98276510--98276543 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98276500 TTAGTATACA
98276510 ATATAATTTTACATC
1 ATAT-ATTTTACATC
*
98276525 ATATATTTTACTTC
1 ATATATTTTACATC
98276539 ATATA
1 ATATA
98276544 ATTATTATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATATTTTACATC
Found at i:98278174 original size:37 final size:36
Alignment explanation
Indices: 98278120--98278228 Score: 119
Period size: 37 Copynumber: 2.9 Consensus size: 36
98278110 CTATGTAGTA
*
98278120 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTAC
1 GATGCAC-GGGCAAAGGCGATGGAGGAGATGGGTTAC
* * *
98278157 GATGCACAGGGCAAAGGCGATGGAGGGGATGGTTTGC
1 GATGCAC-GGGCAAAGGCGATGGAGGAGATGGGTTAC
* ** *
98278194 GATGCACGGGGAGAAGGCGACAGAGTAGATGGGTT
1 GATGCACGGGCA-AAGGCGATGGAGGAGATGGGTT
98278229 GTAATGCACG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
36 4 0.07
37 56 0.93
ACGTcount: A:0.26, C:0.13, G:0.47, T:0.15
Consensus pattern (36 bp):
GATGCACGGGCAAAGGCGATGGAGGAGATGGGTTAC
Found at i:98279134 original size:7 final size:7
Alignment explanation
Indices: 98279114--98279183 Score: 52
Period size: 7 Copynumber: 10.0 Consensus size: 7
98279104 AAAAATATAG
98279114 CCTAAAC
1 CCTAAAC
* *
98279121 TCGAAAC
1 CCTAAAC
98279128 CCTAAAC
1 CCTAAAC
* *
98279135 CCAAAAT
1 CCTAAAC
*
98279142 CATAAAC
1 CCTAAAC
*
98279149 ACTAAAC
1 CCTAAAC
* *
98279156 CATGAAC
1 CCTAAAC
98279163 ACC-AAAC
1 -CCTAAAC
98279170 CCTAAAC
1 CCTAAAC
98279177 CCTAAAC
1 CCTAAAC
98279184 TTTAAACCCC
Statistics
Matches: 45, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
6 2 0.04
7 42 0.93
8 1 0.02
ACGTcount: A:0.49, C:0.36, G:0.03, T:0.13
Consensus pattern (7 bp):
CCTAAAC
Found at i:98280470 original size:12 final size:12
Alignment explanation
Indices: 98280453--98280478 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98280443 TTTTTTATCC
98280453 AAACGCCGCTAA
1 AAACGCCGCTAA
98280465 AAACGCCGCTAA
1 AAACGCCGCTAA
98280477 AA
1 AA
98280479 GTCCGTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:98282107 original size:9 final size:9
Alignment explanation
Indices: 98282093--98282121 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
98282083 TATCCAACAG
98282093 TTGCAAGTA
1 TTGCAAGTA
98282102 TTGCAAGTA
1 TTGCAAGTA
98282111 TTGCAAGTA
1 TTGCAAGTA
98282120 TT
1 TT
98282122 AGCATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (9 bp):
TTGCAAGTA
Found at i:98282616 original size:69 final size:68
Alignment explanation
Indices: 98282536--98282695 Score: 198
Period size: 69 Copynumber: 2.3 Consensus size: 68
98282526 TCTTCCCTGC
* * * * *
98282536 TTTCATAAAAAAGTTAATTTTAATCCCAT-ATTGACTAGAGAATACTCACATAGTTCACTTCTTT
1 TTTCATTAAAAA-TTAATTTTAAT-CCATCATTGACCAAAGAATACTCACATAGCTCAATTCTTT
*
98282600 ACTAT
64 ACTAA
* **
98282605 TTTCATTAAAAATTTAATTTTAATCCTTCATTGACCAAAGAATACTCTTATAGCTCAATTCTTTA
1 TTTCATTAAAAA-TTAATTTTAATCCATCATTGACCAAAGAATACTCACATAGCTCAATTCTTTA
98282670 CTAA
65 CTAA
98282674 TTTCATTAAAAA-TAATTTTAAT
1 TTTCATTAAAAATTAATTTTAAT
98282696 ACTTTAAAAG
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
67 10 0.12
68 3 0.04
69 67 0.84
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.42
Consensus pattern (68 bp):
TTTCATTAAAAATTAATTTTAATCCATCATTGACCAAAGAATACTCACATAGCTCAATTCTTTAC
TAA
Found at i:98284904 original size:16 final size:15
Alignment explanation
Indices: 98284883--98284912 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98284873 TTAAAAATGC
98284883 GATATGAATACAATAT
1 GATATGAATA-AATAT
98284899 GATATGAATAAATA
1 GATATGAATAAATA
98284913 AACATATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.03, G:0.13, T:0.30
Consensus pattern (15 bp):
GATATGAATAAATAT
Found at i:98290219 original size:41 final size:41
Alignment explanation
Indices: 98290173--98290254 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
98290163 TGCATTAGGC
98290173 TTAAGTTTAAGTTTTAAACATTAAAAAGCTAAATTTTTCTT
1 TTAAGTTTAAGTTTTAAACATTAAAAAGCTAAATTTTTCTT
98290214 TTAAGTTTAAGTTTTAAACATTAAAAAGCTAAATTTTTCTT
1 TTAAGTTTAAGTTTTAAACATTAAAAAGCTAAATTTTTCTT
98290255 ATCTCCCACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (41 bp):
TTAAGTTTAAGTTTTAAACATTAAAAAGCTAAATTTTTCTT
Found at i:98294004 original size:27 final size:26
Alignment explanation
Indices: 98293974--98294152 Score: 198
Period size: 27 Copynumber: 6.7 Consensus size: 26
98293964 TTAGTTTACC
*
98293974 AAATCACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACC-CTGGTTTGTA
**
98294001 AAATTACCAAAATACCCTTATTT-TACA
1 AAATTACCAAAATACCCTGGTTTGT--A
*
98294028 AAATTACCAAAATACCCCTGGTTTATA
1 AAATTACCAAAATA-CCCTGGTTTGTA
98294055 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
98294082 AAATTACCAAAATACTCCTGGTCTGTA
1 AAATTACCAAAATAC-CCTGGTTTGTA
** *
98294109 AAATTATTAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACC-CTGGTTTGTA
* *
98294136 AAATTATCGAAATACCC
1 AAATTACCAAAATACCC
98294153 CCGTAGGGTA
Statistics
Matches: 132, Mismatches: 13, Indels: 15
0.82 0.08 0.09
Matches are distributed among these distances:
25 1 0.01
26 10 0.08
27 111 0.84
28 9 0.07
29 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:98294166 original size:27 final size:27
Alignment explanation
Indices: 98294137--98294277 Score: 219
Period size: 27 Copynumber: 5.2 Consensus size: 27
98294127 TGGTTTGTGA
* * *
98294137 AATTATCGAAATACCCCCGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
98294164 AATTACTGAACTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
98294191 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
98294218 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
98294245 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
98294272 AATTAC
1 AATTAC
98294278 TAAGATACCT
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:98294195 original size:81 final size:81
Alignment explanation
Indices: 98294079--98294286 Score: 224
Period size: 81 Copynumber: 2.6 Consensus size: 81
98294069 CCCTTGGTTT
* * ** * **
98294079 GTAAAATTACCAAAATACTCCTGGT-CTGTAAAATTATTAAAATACCACTGGT-TTGT-GAAATT
1 GTAAAATTACCGAAATACCCCT-GTAGGGTAGAATTATTAAAATACCACT-GTAGGGTAG-AATT
*
98294141 ATCGAAATACCCCCGTAGG
63 ACCGAAATACCCCCGTAGG
* * * *
98294160 GTAAAATTACTGAACTACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACC
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTATTAAAATACCACTGTAGGGTAGAATTACC
*
98294225 GAAATACCCCTGTAGG
66 GAAATACCCCCGTAGG
* * *
98294241 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAGATACC
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTATTAAAATACC
98294287 TTTTGGGGTA
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
80 4 0.04
81 100 0.95
82 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTATTAAAATACCACTGTAGGGTAGAATTACC
GAAATACCCCCGTAGG
Found at i:98294641 original size:5 final size:5
Alignment explanation
Indices: 98294631--98294668 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
98294621 AATAATTAAG
98294631 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
98294669 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:98297524 original size:22 final size:22
Alignment explanation
Indices: 98297472--98297525 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
98297462 TTAAAGCCTT
* * *
98297472 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTATGCCAAC
*
98297494 CT-ACATATGGCTCTATGCCAAC
1 CTGA-TTATGGCTCTATGCCAAC
98297516 CTGATTATGG
1 CTGATTATGG
98297526 TTGTGTGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTATGCCAAC
Found at i:98297790 original size:54 final size:53
Alignment explanation
Indices: 98297695--98297796 Score: 123
Period size: 54 Copynumber: 1.9 Consensus size: 53
98297685 ATTCTGTTAA
* * * **
98297695 GTGGCTTTGCCACATTATCTATTTCTGGTGGTTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAGTATCTATATCTGGTGACTATGCCAC-AATATCTGTTCTG
* * *
98297749 GTGGCTCTGCCACAGTATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAGTATCTATATCTGGTGACTATGCCACAATATCTG
98297797 ATAACTGAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 8 0.20
54 32 0.80
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAGTATCTATATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:98297796 original size:27 final size:26
Alignment explanation
Indices: 98297702--98297796 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 26
98297692 TAAGTGGCTT
* * ** *
98297702 TGCCACATTATCTATTTCTGGTGGTTA
1 TGCCACAATATCT-GTTCTGGTGACTC
*
98297729 TGCCACAAATATCTGTTCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGTGACTC
*
98297756 TGCCACAGTATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
98297783 TGTCACAATATCTG
1 TGCCACAATATCTG
98297797 ATAACTGAGC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.14
27 44 0.76
28 6 0.10
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:98297971 original size:6 final size:6
Alignment explanation
Indices: 98297956--98298052 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
98297946 ATTCTGTTAC
* * *
98297956 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
98298005 CTGATT ATG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
98298053 AATGTTTCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 61 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.15, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:98297984 original size:31 final size:31
Alignment explanation
Indices: 98297946--98298068 Score: 151
Period size: 31 Copynumber: 4.0 Consensus size: 31
98297936 CTGATTTTTT
*
98297946 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
98297977 ATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * * *
98298008 ATTATGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
98298039 ATTCTAGTT--CTGATAATGTTTCTTATTCTG
1 ATTCT-GTTACCTGATACTGATTCTGATTCTG
98298069 TAATGGGTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
30 16 0.20
31 61 0.77
32 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:98301000 original size:21 final size:21
Alignment explanation
Indices: 98300976--98301023 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
98300966 TTCACAAAGA
*
98300976 CGTGTGCCTTAGACACACGAT
1 CGTGTGCCTTAGACACACGAG
** *
98300997 CGTGTTTCTTAGCCACACGAG
1 CGTGTGCCTTAGACACACGAG
98301018 CGTGTG
1 CGTGTG
98301024 AATTAGCCAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (21 bp):
CGTGTGCCTTAGACACACGAG
Found at i:98304504 original size:19 final size:20
Alignment explanation
Indices: 98304463--98304506 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
98304453 ACTCATAATG
*
98304463 TTTTTCTACTGATTTTGTTC
1 TTTTTCTACTGATTTTGTAC
98304483 TTTTTCTACTTG-TTTTG-AC
1 TTTTTCTAC-TGATTTTGTAC
98304502 TTTTT
1 TTTTT
98304507 TAAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 14 0.64
21 2 0.09
ACGTcount: A:0.09, C:0.14, G:0.09, T:0.68
Consensus pattern (20 bp):
TTTTTCTACTGATTTTGTAC
Found at i:98307056 original size:14 final size:14
Alignment explanation
Indices: 98307037--98307067 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
98307027 ACTCGATTAA
98307037 CTTGTTAATTCATT
1 CTTGTTAATTCATT
98307051 CTTGTTAATTCATT
1 CTTGTTAATTCATT
98307065 CTT
1 CTT
98307068 AGGCCCGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.16, G:0.06, T:0.58
Consensus pattern (14 bp):
CTTGTTAATTCATT
Found at i:98326118 original size:40 final size:40
Alignment explanation
Indices: 98326047--98326144 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
98326037 CACCAACTCG
* * *
98326047 ATCCAACCCGGCACACC--ATATGGGGATAAAATTGACCC
1 ATCCATCCCTGCACACCATATATGGGGACAAAATTGACCC
*
98326085 A-CACATCCCTGCACACCATATATGGGGACAAAATTGATCC
1 ATC-CATCCCTGCACACCATATATGGGGACAAAATTGACCC
*
98326125 ATCCATCCCTACACACCATA
1 ATCCATCCCTGCACACCATA
98326145 AGGTACTGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.02
38 13 0.25
40 36 0.71
41 1 0.02
ACGTcount: A:0.35, C:0.34, G:0.13, T:0.18
Consensus pattern (40 bp):
ATCCATCCCTGCACACCATATATGGGGACAAAATTGACCC
Found at i:98336483 original size:79 final size:79
Alignment explanation
Indices: 98336352--98336512 Score: 322
Period size: 79 Copynumber: 2.0 Consensus size: 79
98336342 GCTATATAAG
98336352 TTCAAGTGTTACTGGAAGCTTAGACCTATGCTTCCTTAGGGCACTAGTCCAGTAATATTGGGTTG
1 TTCAAGTGTTACTGGAAGCTTAGACCTATGCTTCCTTAGGGCACTAGTCCAGTAATATTGGGTTG
98336417 CTTATAACAAATCA
66 CTTATAACAAATCA
98336431 TTCAAGTGTTACTGGAAGCTTAGACCTATGCTTCCTTAGGGCACTAGTCCAGTAATATTGGGTTG
1 TTCAAGTGTTACTGGAAGCTTAGACCTATGCTTCCTTAGGGCACTAGTCCAGTAATATTGGGTTG
98336496 CTTATAACAAATCA
66 CTTATAACAAATCA
98336510 TTC
1 TTC
98336513 TCCTAGTCGG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (79 bp):
TTCAAGTGTTACTGGAAGCTTAGACCTATGCTTCCTTAGGGCACTAGTCCAGTAATATTGGGTTG
CTTATAACAAATCA
Found at i:98339808 original size:51 final size:51
Alignment explanation
Indices: 98339746--98339881 Score: 182
Period size: 51 Copynumber: 2.7 Consensus size: 51
98339736 TGGAAACATG
*
98339746 ATCTTAAAAGATATGATTTTATAATCTTAAAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAAAGATCTTAGATAAGATATGTA
* * ** * *
98339797 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAAAGATCTTAGATAAGATATGTA
* * *
98339848 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAAAGAT
98339882 TTGATTGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAAAGATCTTAGATAAGATATGTA
Found at i:98339851 original size:19 final size:19
Alignment explanation
Indices: 98339778--98339855 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
98339768 AATCTTAAAG
*
98339778 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
98339797 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
98339812 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
98339828 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
98339848 ATCTTAGA
1 ATCTTAGA
98339856 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:98364262 original size:24 final size:24
Alignment explanation
Indices: 98364234--98364285 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
98364224 TTTGTTGGTC
* *
98364234 AAATAAATTATGCTAACAAATGCT
1 AAATAAATTATACTAACAAATACT
* *
98364258 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAACAAATACT
98364282 AAAT
1 AAAT
98364286 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAACAAATACT
Found at i:98373679 original size:53 final size:52
Alignment explanation
Indices: 98373550--98373685 Score: 168
Period size: 53 Copynumber: 2.6 Consensus size: 52
98373540 AGCGATATTT
98373550 GTATAAGACCATAGCTGGGCTATGGCATCAGAAAGCAAAGGATAAGTGATTTCC
1 GTATAAGACCATAGCTGGGCTATGGCATCAG-AAGCAAAGGATAAGTGA-TTCC
* * ** *
98373604 GTATAAGACCATAGCTGGGCTATGGCTTTAG-ATTAATGTGATACAAGTGA-TCC
1 GTATAAGACCATAGCTGGGCTATGGCATCAGAAGCAAAG-GAT--AAGTGATTCC
98373657 GTATAAGACCATAGCTGGGCTATGGCATC
1 GTATAAGACCATAGCTGGGCTATGGCATC
98373686 GGAGAATAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
52 4 0.06
53 33 0.46
54 29 0.40
55 6 0.08
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (52 bp):
GTATAAGACCATAGCTGGGCTATGGCATCAGAAGCAAAGGATAAGTGATTCC
Found at i:98379355 original size:11 final size:11
Alignment explanation
Indices: 98379338--98379368 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
98379328 TTGACGGATA
98379338 AGACCATGGTT
1 AGACCATGGTT
*
98379349 GGACCATGGTT
1 AGACCATGGTT
98379360 AGACCATGG
1 AGACCATGG
98379369 CAATGTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (11 bp):
AGACCATGGTT
Found at i:98382211 original size:24 final size:24
Alignment explanation
Indices: 98382183--98382234 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98382173 TTCATAGGTC
* *
98382183 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
98382207 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
98382231 AAAT
1 AAAT
98382235 CTTTTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:98384257 original size:42 final size:41
Alignment explanation
Indices: 98384193--98384392 Score: 152
Period size: 42 Copynumber: 4.7 Consensus size: 41
98384183 AGCTCGTACA
* * *
98384193 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATCAA-ATCG
* * *
98384235 ATGCCACTGTCCCAGATATGGTCTTACACGAAATTAAATACG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAAT-CG
** * * *
98384277 ATGTTGA-TGTCCCAGACATGGTCTTATATGTAATCTTTAATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACGTAATC--AAATCG
* * * * *
98384320 ATGTCAGTGTCCCAGACACGGTCTTACACGATATCTCAAGTCG
1 ATGCCACTGTCCCAGACATGGTCTTACACG-TA-ATCAAATCG
**
98384363 ATGCCAAC-GTCCCAGATGTGGTCTTACACG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACG
98384393 AAATTATATC
Statistics
Matches: 124, Mismatches: 26, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 61 0.49
43 53 0.43
44 6 0.05
45 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (41 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAATCAAATCG
Found at i:98399418 original size:42 final size:39
Alignment explanation
Indices: 98399370--98399453 Score: 116
Period size: 39 Copynumber: 2.1 Consensus size: 39
98399360 ATTAAAAATA
98399370 TATTATATTAAAAAA-ACACTACCACAAATATAATAAATATTT
1 TATTATATTAAAAAATACA--A--ACAAATATAATAAATATTT
*
98399412 TATTATATTAAAAAATACAAATAAATATAATAAATATTT
1 TATTATATTAAAAAATACAAACAAATATAATAAATATTT
98399451 TAT
1 TAT
98399454 CGTATTAGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
39 21 0.52
41 1 0.03
42 15 0.38
43 3 0.08
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (39 bp):
TATTATATTAAAAAATACAAACAAATATAATAAATATTT
Found at i:98400667 original size:42 final size:43
Alignment explanation
Indices: 98400589--98400673 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
98400579 TGTTTTAAAC
98400589 TTTGAACATTTTTAACATTTTTTCATTTTAATTAATTTTAATT
1 TTTGAACATTTTTAACATTTTTTCATTTTAATTAATTTTAATT
* *
98400632 TTTGAATATTATTTAA-TTTTTTTCA-TTT-ATGTAATTTTAATT
1 TTTGAACATT-TTTAACATTTTTTCATTTTAAT-TAATTTTAATT
98400674 AATTTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
41 2 0.05
42 14 0.37
43 17 0.45
44 5 0.13
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (43 bp):
TTTGAACATTTTTAACATTTTTTCATTTTAATTAATTTTAATT
Found at i:98401626 original size:7 final size:7
Alignment explanation
Indices: 98401614--98401638 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
98401604 AGTCGTTTCA
98401614 TATTTAG
1 TATTTAG
98401621 TATTTAG
1 TATTTAG
98401628 TATTTAG
1 TATTTAG
98401635 TATT
1 TATT
98401639 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:98406230 original size:125 final size:126
Alignment explanation
Indices: 98405812--98406265 Score: 652
Period size: 125 Copynumber: 3.6 Consensus size: 126
98405802 TTTTTAGAAA
98405812 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
1 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
* * *
98405877 AATTATTTTTTCAGGAACAACTATAGCAAAAGAGCGTCCATGTAGG-AGCTTTTTTTTTGTAT
66 AATTATTTTTTCAGGAACTACTGTAGCAAAAGAGCGTCCATGT-GGAAGC-TTTTTTCTGTAT
98405939 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
1 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTC-A
*** * * *
98406004 AAATTATTTTTTCAGGAACTACTGTAG-AAAA-AGAAACC-TG-GGAA-CTTTTTTCAGAAA
65 AAATTATTTTTTCAGGAACTACTGTAGCAAAAGAGCGTCCATGTGGAAGCTTTTTTCTGTAT
* * * *
98406061 TTTTGCTGACATTTCATCTTGCTTGAAGCATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
1 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
* *
98406126 AACTATTTTTT-AGGAACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTTTTTCTGTAT
66 AATTATTTTTTCAGGAACTACTGTAGCAAAAGAGCGTCCATGTGGAAGCTTTTTTCTGTAT
* * * * *
98406186 TTTTGCTGACAGTGCATCCTGCTTGAAGCGTTTTTGACATTATTTGTTCAAAAACGTTTTCTCAA
1 TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
98406251 AATTATTTTTTCAGG
66 AATTATTTTTTCAGG
98406266 GTAAAAATAG
Statistics
Matches: 290, Mismatches: 29, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
120 14 0.05
121 16 0.06
122 71 0.24
123 4 0.01
124 5 0.02
125 80 0.28
126 7 0.02
127 67 0.23
128 26 0.09
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
TTTTGCTGACATTGCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAA
AATTATTTTTTCAGGAACTACTGTAGCAAAAGAGCGTCCATGTGGAAGCTTTTTTCTGTAT
Found at i:98406436 original size:22 final size:22
Alignment explanation
Indices: 98406411--98406453 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
98406401 GATAAACCTA
*
98406411 AAACCCTAATTTAATTTATTTT
1 AAACCCTAACTTAATTTATTTT
98406433 AAACCCTAACTTAATTTATTT
1 AAACCCTAACTTAATTTATTT
98406454 AAAATCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (22 bp):
AAACCCTAACTTAATTTATTTT
Found at i:98406441 original size:109 final size:107
Alignment explanation
Indices: 98406323--98406789 Score: 580
Period size: 109 Copynumber: 4.3 Consensus size: 107
98406313 AAAAAAAAAC
* * ** *
98406323 TAAACCCTAATTTAATTTATTTAAAATCCTAACATTCTAATTTACTTAATCTATTTAAAAAAACA
1 TAAACCCTAACTTAATTTATTTAAAATCCTAAAACCCTAATTTAATTAAT-T-TTTAAAAAAACA
* *
98406388 TAAGCCCTAATTTGATAAACCTAAAACCCTAATTTAATTTATTT
64 TAAACCCTAATTTAATAAACCTAAAACCCTAATTTAATTTATTT
* * *
98406432 TAAACCCTAACTTAATTTATTTAAAATCTTAAAACCCTAATTTAATTAATTTTAACTAAAAAATA
1 TAAACCCTAACTTAATTTATTTAAAATCCTAAAACCCTAATTTAATTAATTTTTA--AAAAAACA
* * *
98406497 TAAACCCTAATTTAATAAACCCAAAAACCTAAATTAATTTATTT
64 TAAACCCTAATTTAATAAACCTAAAACCCTAATTTAATTTATTT
** *
98406541 TAAACTGTAACTTAATTTATTTAAAA-CCTTGAAACCCTAATTTAATTAATTTTTAACCAACAAA
1 TAAACCCTAACTTAATTTATTTAAAATCC-TAAAACCCTAATTTAATTAATTTTTAA--AA-AAA
* * * *
98406605 TATAAACCCTAATTTAATAAATCTGAAACACTAATTTAATTTATTT
62 CATAAACCCTAATTTAATAAACCTAAAACCCTAATTTAATTTATTT
* * *
98406651 TAAACCCTAACTTAATTTATTTAAAACCCTAAAACCCCAATTTACTTAATCTATTT-AAAAAACA
1 TAAACCCTAACTTAATTTATTTAAAATCCTAAAACCCTAATTTAATTAAT-T-TTTAAAAAAACA
*
98406715 TAAACCCTAATTTAATAAACCCT-AAACCCTAATTTAATTTATTA
64 TAAACCCTAATTTAATAAA-CCTAAAACCCTAATTTAATTTATTT
* *
98406759 TAAACGCTAACTTAATTTTTTTAAAATCCTA
1 TAAACCCTAACTTAATTTATTTAAAATCCTA
98406790 GAGCCATAAT
Statistics
Matches: 312, Mismatches: 36, Indels: 21
0.85 0.10 0.06
Matches are distributed among these distances:
107 4 0.01
108 72 0.23
109 144 0.46
110 85 0.27
111 4 0.01
112 3 0.01
ACGTcount: A:0.44, C:0.17, G:0.01, T:0.38
Consensus pattern (107 bp):
TAAACCCTAACTTAATTTATTTAAAATCCTAAAACCCTAATTTAATTAATTTTTAAAAAAACATA
AACCCTAATTTAATAAACCTAAAACCCTAATTTAATTTATTT
Found at i:98406655 original size:22 final size:22
Alignment explanation
Indices: 98406607--98406682 Score: 89
Period size: 22 Copynumber: 3.5 Consensus size: 22
98406597 CCAACAAATA
** *
98406607 TAAACCCTAATTTAATAAATCT
1 TAAACCCTAATTTAATTTATTT
* *
98406629 GAAACACTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
98406651 TAAACCCTAACTTAATTTATTT
1 TAAACCCTAATTTAATTTATTT
*
98406673 AAAACCCTAA
1 TAAACCCTAA
98406683 AACCCCAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.38
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTATTT
Found at i:98406720 original size:34 final size:34
Alignment explanation
Indices: 98406660--98406728 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
98406650 TTAAACCCTA
* * *
98406660 ACTTAATTTATTTAAAACCCTAAAACCCCAATTT
1 ACTTAATCTATTTAAAAACATAAAACCCCAATTT
*
98406694 ACTTAATCTATTTAAAAAACAT-AAACCCTAATTT
1 ACTTAATCTATTT-AAAAACATAAAACCCCAATTT
98406728 A
1 A
98406729 ATAAACCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 24 0.80
35 6 0.20
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (34 bp):
ACTTAATCTATTTAAAAACATAAAACCCCAATTT
Found at i:98406729 original size:21 final size:22
Alignment explanation
Indices: 98406703--98406752 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
98406693 TACTTAATCT
98406703 ATTTAA-AAAACATAAACCCTA
1 ATTTAATAAAACATAAACCCTA
* *
98406724 ATTTAATAAACCCTAAACCCTA
1 ATTTAATAAAACATAAACCCTA
98406746 ATTTAAT
1 ATTTAAT
98406753 TTATTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (22 bp):
ATTTAATAAAACATAAACCCTA
Found at i:98406762 original size:22 final size:22
Alignment explanation
Indices: 98406713--98406776 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
98406703 ATTTAAAAAA
**
98406713 CATAAACCCTAATTTAATAAAC
1 CATAAACCCTAATTTAATTTAC
* *
98406735 CCTAAACCCTAATTTAATTTAT
1 CATAAACCCTAATTTAATTTAC
* * *
98406757 TATAAACGCTAACTTAATTT
1 CATAAACCCTAATTTAATTT
98406777 TTTTAAAATC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36
Consensus pattern (22 bp):
CATAAACCCTAATTTAATTTAC
Found at i:98406805 original size:33 final size:34
Alignment explanation
Indices: 98406768--98406850 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 34
98406758 ATAAACGCTA
* *
98406768 ACTTAATTTTTTTAAAATCCTAGAGCCATAA-TT
1 ACTTAATTTATTTAAAATCCTAGAACCATAATTT
98406801 ACTTAATTTATTTAAAATCCTAGAACCATAATTT
1 ACTTAATTTATTTAAAATCCTAGAACCATAATTT
*
98406835 ACTTAATCTATTTAAA
1 ACTTAATTTATTTAAA
98406851 TTCAAAACCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 29 0.63
34 17 0.37
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (34 bp):
ACTTAATTTATTTAAAATCCTAGAACCATAATTT
Found at i:98407045 original size:34 final size:36
Alignment explanation
Indices: 98406969--98407052 Score: 118
Period size: 35 Copynumber: 2.4 Consensus size: 36
98406959 TTTTAAAAAC
*
98406969 TACTAAAACCCTAACTTGTTTTAACAAAAACATAAA
1 TACTAAAACCCTAACTTATTTTAACAAAAACATAAA
* * *
98407005 TACT-AAACCCTAACTTATTTTATCAAAACCCTAAA
1 TACTAAAACCCTAACTTATTTTAACAAAAACATAAA
98407040 T-CTAAAACCCTAA
1 TACTAAAACCCTAA
98407053 AAAACCATAG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
34 2 0.05
35 37 0.86
36 4 0.09
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (36 bp):
TACTAAAACCCTAACTTATTTTAACAAAAACATAAA
Found at i:98407579 original size:18 final size:20
Alignment explanation
Indices: 98407549--98407589 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
98407539 TATTATTAAA
98407549 TAAAATATTAAAAATATT-T
1 TAAAATATTAAAAATATTAT
*
98407568 TAAAAT-TTAAAATTATTAT
1 TAAAATATTAAAAATATTAT
98407587 TAA
1 TAA
98407590 TGTTAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAAATATTAAAAATATTAT
Found at i:98407783 original size:79 final size:80
Alignment explanation
Indices: 98407694--98407847 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
98407684 AAATGTAAAT
* *
98407694 ATGTATGTTTAATAATA-TAAGCA-TATGAGAAAATATTTGATGCACTATT-GGAGGAGGTTTTA
1 ATGTATGTTTAATAATATTAA-AATTATGAGAAAATATTTGATGCACTATTAGGA-AAGGTTTTA
98407756 GACTCCACAAGTTAATC
64 GACTCCACAAGTTAATC
* * * * * *
98407773 ATGTATGTTTAATGATATTAAAATTATGAGAAAATATTTGGTGTACTGTTAGTAAAGGTTTTATA
1 ATGTATGTTTAATAATATTAAAATTATGAGAAAATATTTGATGCACTATTAGGAAAGGTTTTAGA
98407838 CTCCACAAGT
66 CTCCACAAGT
98407848 AAACAAGTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
79 17 0.27
80 45 0.70
81 2 0.03
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.37
Consensus pattern (80 bp):
ATGTATGTTTAATAATATTAAAATTATGAGAAAATATTTGATGCACTATTAGGAAAGGTTTTAGA
CTCCACAAGTTAATC
Found at i:98409376 original size:12 final size:12
Alignment explanation
Indices: 98409359--98409390 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
98409349 CGGCCCGCCC
98409359 ATATTAATTTTT
1 ATATTAATTTTT
98409371 ATATT-ATTTTT
1 ATATTAATTTTT
98409382 ATA-TAATTT
1 ATATTAATTT
98409391 AATATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:98409550 original size:30 final size:30
Alignment explanation
Indices: 98409516--98409572 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
98409506 ACTTAACAAT
*
98409516 CAAATATCTCTAAAATAATAATAAAATTAA
1 CAAATATCTCTAAAATAATAACAAAATTAA
* *
98409546 CAAATGTCTTTAAAATAATAACAAAAT
1 CAAATATCTCTAAAATAATAACAAAAT
98409573 AGTAGTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.30
Consensus pattern (30 bp):
CAAATATCTCTAAAATAATAACAAAATTAA
Found at i:98409607 original size:22 final size:22
Alignment explanation
Indices: 98409557--98409607 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
98409547 AAATGTCTTT
*
98409557 AAAATAATAACAAAATAGTAGT
1 AAAATAATAACAAAATAGTAGC
* ** *
98409579 AATATAATAGTAAAATGGTAGC
1 AAAATAATAACAAAATAGTAGC
98409601 AAAATAA
1 AAAATAA
98409608 GGAGAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.61, C:0.04, G:0.12, T:0.24
Consensus pattern (22 bp):
AAAATAATAACAAAATAGTAGC
Found at i:98410659 original size:21 final size:20
Alignment explanation
Indices: 98410615--98410675 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
98410605 AAGTAATGAA
* * *
98410615 AAAACAACAAAAAAAGCAAT
1 AAAACAATAAAAAAAACAAG
98410635 AAAACAATAAAAAATAACAAG
1 AAAACAATAAAAAA-AACAAG
*
98410656 AAAACAGTAAAAAAGAACAA
1 AAAACAATAAAAAA-AACAA
98410676 CAATTTCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
20 13 0.37
21 22 0.63
ACGTcount: A:0.75, C:0.11, G:0.07, T:0.07
Consensus pattern (20 bp):
AAAACAATAAAAAAAACAAG
Found at i:98414127 original size:26 final size:26
Alignment explanation
Indices: 98414097--98414155 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
98414087 TTCTGCAAAA
98414097 TATTCATTGATCAATCAAACGATAGT
1 TATTCATTGATCAATCAAACGATAGT
98414123 TATTCATTGATCAATCAAACGATAGT
1 TATTCATTGATCAATCAAACGATAGT
98414149 TATTCAT
1 TATTCAT
98414156 GATTCACCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (26 bp):
TATTCATTGATCAATCAAACGATAGT
Found at i:98424853 original size:24 final size:24
Alignment explanation
Indices: 98424816--98424863 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
98424806 GTTCTCGAAC
*
98424816 AAGCTCATTCATTGGCTCATTTAT
1 AAGCTCATTCATTGACTCATTTAT
* *
98424840 AAGCTCTTTTATTGACTCATTTAT
1 AAGCTCATTCATTGACTCATTTAT
98424864 TTATTAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (24 bp):
AAGCTCATTCATTGACTCATTTAT
Found at i:98430223 original size:62 final size:62
Alignment explanation
Indices: 98430044--98430223 Score: 165
Period size: 61 Copynumber: 2.9 Consensus size: 62
98430034 ATATATAGTA
* * * *
98430044 TTTTTACATTTAGGACT-AAATTGATATATTTTGTAAATGTTA-AGGGGC-AAGTTTATTGAAT
1 TTTTTACATTTAGGACTAAAATTAATA-AATTTGTAAATATTAGA-GGGCTAAATTTATTGAAT
* * * * * *
98430105 TTTTTAGAATTAGAACTAAAATGAA-AAATTTTGTAAACAAT-GAGGGCTAAATTTATTGAAT
1 TTTTTACATTTAGGACTAAAATTAATAAA-TTTGTAAATATTAGAGGGCTAAATTTATTGAAT
* * *
98430166 TTTTTATATTTAGGA-TAAAATTAATAGAATATGTAAATATTAGAGGGCTAATTTTATT
1 TTTTTACATTTAGGACTAAAATTAATA-AATTTGTAAATATTAGAGGGCTAAATTTATT
98430224 ACTACACCAA
Statistics
Matches: 94, Mismatches: 18, Indels: 13
0.75 0.14 0.10
Matches are distributed among these distances:
60 13 0.14
61 59 0.63
62 22 0.23
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.42
Consensus pattern (62 bp):
TTTTTACATTTAGGACTAAAATTAATAAATTTGTAAATATTAGAGGGCTAAATTTATTGAAT
Found at i:98435272 original size:40 final size:39
Alignment explanation
Indices: 98435249--98435339 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 39
98435239 TTCGAATTCT
*
98435249 TGAAAAGGTTGAAAAGGATATATCTGAAACAAATATCTAA
1 TGAAAAGGTTGAAAAGGATATATCGGAAACAAATATCT-A
* ***
98435289 TGAAAAGGTTGAAAAGGATATATCCGAAATGGATATCTA
1 TGAAAAGGTTGAAAAGGATATATCGGAAACAAATATCTA
98435328 TCGAAAAGGTTG
1 T-GAAAAGGTTG
98435340 TTACCCTAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (39 bp):
TGAAAAGGTTGAAAAGGATATATCGGAAACAAATATCTA
Found at i:98436506 original size:14 final size:15
Alignment explanation
Indices: 98436489--98436525 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
98436479 TATAATTAAA
98436489 ATATAATAATAAT-G
1 ATATAATAATAATAG
98436503 ATATAAT-ATAATAG
1 ATATAATAATAATAG
*
98436517 TTATAATAA
1 ATATAATAA
98436526 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 5 0.25
14 14 0.70
15 1 0.05
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (15 bp):
ATATAATAATAATAG
Found at i:98443808 original size:14 final size:15
Alignment explanation
Indices: 98443791--98443827 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
98443781 TATAATTAAA
98443791 ATATAATAATAAT-G
1 ATATAATAATAATAG
98443805 ATATAAT-ATAATAG
1 ATATAATAATAATAG
*
98443819 TTATAATAA
1 ATATAATAA
98443828 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 5 0.25
14 14 0.70
15 1 0.05
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (15 bp):
ATATAATAATAATAG
Found at i:98447782 original size:25 final size:25
Alignment explanation
Indices: 98447753--98447804 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
98447743 AAGATTAATT
**
98447753 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCCGATATTGCCTAATAAA
* *
98447778 TGAATATCCGATATTGCTTAGTAAA
1 TGAATATCCGATATTGCCTAATAAA
98447803 TG
1 TG
98447805 TCAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (25 bp):
TGAATATCCGATATTGCCTAATAAA
Found at i:98451468 original size:99 final size:99
Alignment explanation
Indices: 98451264--98451466 Score: 399
Period size: 99 Copynumber: 2.1 Consensus size: 99
98451254 TTTAAAGGTT
98451264 GATTTTATCCATTAATTATCTTCAGTATTTATCTCATAATAGCCTTCATAAACAAGTTCCCCAAC
1 GATTTTATCCATTAATTATCTTCAGTATTTATCTCATAATAGCCTTCATAAACAAGTTCCCCAAC
98451329 AACTTGAAATACCCCTTAAATAAATCTAACATAG
66 AACTTGAAATACCCCTTAAATAAATCTAACATAG
98451363 GATTTTATCCATTAATTATCTTCAGTATTTATCTCATAATAGCCTTCATAAACAAGTTCCCCAAC
1 GATTTTATCCATTAATTATCTTCAGTATTTATCTCATAATAGCCTTCATAAACAAGTTCCCCAAC
98451428 AACTTGAAATACCCCTTAAATAAATCTAACATA-
66 AACTTGAAATACCCCTTAAATAAATCTAACATAG
98451461 GATTTT
1 GATTTT
98451467 TAAAAAATAG
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 6 0.06
99 98 0.94
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (99 bp):
GATTTTATCCATTAATTATCTTCAGTATTTATCTCATAATAGCCTTCATAAACAAGTTCCCCAAC
AACTTGAAATACCCCTTAAATAAATCTAACATAG
Found at i:98451501 original size:49 final size:49
Alignment explanation
Indices: 98451429--98451530 Score: 204
Period size: 49 Copynumber: 2.1 Consensus size: 49
98451419 TTCCCCAACA
98451429 ACTTGAAATACCCCTTAAATAAATCTAACATAGATTTTTAAAAAATAGC
1 ACTTGAAATACCCCTTAAATAAATCTAACATAGATTTTTAAAAAATAGC
98451478 ACTTGAAATACCCCTTAAATAAATCTAACATAGATTTTTAAAAAATAGC
1 ACTTGAAATACCCCTTAAATAAATCTAACATAGATTTTTAAAAAATAGC
98451527 ACTT
1 ACTT
98451531 CAATCATAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (49 bp):
ACTTGAAATACCCCTTAAATAAATCTAACATAGATTTTTAAAAAATAGC
Found at i:98451539 original size:29 final size:29
Alignment explanation
Indices: 98451506--98451565 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
98451496 ATAAATCTAA
98451506 CATAGATTTTTAAAAAATAGCACTTCAAT
1 CATAGATTTTTAAAAAATAGCACTTCAAT
98451535 CATAGATTTTTAAAAAATAGCACTTCAAT
1 CATAGATTTTTAAAAAATAGCACTTCAAT
98451564 CA
1 CA
98451566 CTAAGAGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (29 bp):
CATAGATTTTTAAAAAATAGCACTTCAAT
Found at i:98451836 original size:21 final size:20
Alignment explanation
Indices: 98451812--98451855 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
98451802 ATTTGTAAAA
98451812 ATAAAAAT-AAAATTTTAATAT
1 ATAAAAATCAAAA--TTAATAT
98451833 AT-AAAATCAAAATTAATAT
1 ATAAAAATCAAAATTAATAT
98451852 ATAA
1 ATAA
98451856 TATTACGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 9 0.43
20 6 0.29
21 6 0.29
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAAAAATCAAAATTAATAT
Found at i:98457085 original size:17 final size:18
Alignment explanation
Indices: 98457063--98457135 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 18
98457053 TTTCTTTTAC
98457063 TACTATTTATTA-TATTT
1 TACTATTTATTATTATTT
*
98457080 TACTATTATAGTTATTTTTT
1 TACTATT-TA-TTATTATTT
* *
98457100 CTACTACTTTGTTATTATTG
1 -TACTA-TTTATTATTATTT
98457120 TACTA-TTATTATTATT
1 TACTATTTATTATTATT
98457136 GCCATTAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
17 17 0.37
18 2 0.04
19 8 0.17
20 11 0.24
21 6 0.13
22 2 0.04
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.62
Consensus pattern (18 bp):
TACTATTTATTATTATTT
Found at i:98457134 original size:20 final size:20
Alignment explanation
Indices: 98457047--98457135 Score: 69
Period size: 20 Copynumber: 4.5 Consensus size: 20
98457037 TAGATAATTA
*
98457047 TATTATT-TTCTTTTACTAC
1 TATTATTATTATTTTACTAC
*
98457066 TATTTATTA-TATTTTACTAT
1 TA-TTATTATTATTTTACTAC
*
98457086 TA-TAGTTATTTTTTCTACTAC
1 TATTA-TTATTATTT-TACTAC
* * *
98457107 T-TTGTTATTATTGTACTAT
1 TATTATTATTATTTTACTAC
98457126 TATTATTATT
1 TATTATTATT
98457136 GCCATTAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
18 2 0.04
19 11 0.20
20 34 0.63
21 7 0.13
ACGTcount: A:0.25, C:0.09, G:0.03, T:0.63
Consensus pattern (20 bp):
TATTATTATTATTTTACTAC
Found at i:98457135 original size:40 final size:40
Alignment explanation
Indices: 98457047--98457135 Score: 105
Period size: 40 Copynumber: 2.2 Consensus size: 40
98457037 TAGATAATTA
*
98457047 TATTATT-TTCTTTTACTACTATTTATTATATTTTACTAT
1 TATTATTATTCTTTTACTACTATTTATTATATTGTACTAT
*
98457086 TA-TAGTTATT-TTTT-CTACTACTTTGTTATTATTGTACTAT
1 TATTA-TTATTCTTTTACTACTA-TTTATTA-TATTGTACTAT
98457126 TATTATTATT
1 TATTATTATT
98457136 GCCATTAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
38 8 0.19
39 14 0.33
40 19 0.44
41 2 0.05
ACGTcount: A:0.25, C:0.09, G:0.03, T:0.63
Consensus pattern (40 bp):
TATTATTATTCTTTTACTACTATTTATTATATTGTACTAT
Found at i:98457197 original size:3 final size:3
Alignment explanation
Indices: 98457191--98457250 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
98457181 ATTATTTTCG
* * * *
98457191 TAT TAT TAT CAT TAT TAC TAT TAT TA- TATT TAC TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
98457236 TAT TAT TAT ATAT TA
1 TAT TAT TAT -TAT TA
98457251 GTGTATATCT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 2 0.04
3 39 0.85
4 5 0.11
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:98457355 original size:3 final size:3
Alignment explanation
Indices: 98457347--98457382 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
98457337 TGCATTTCTA
98457347 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98457383 ATAGTAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:98457402 original size:23 final size:23
Alignment explanation
Indices: 98457371--98457435 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
98457361 TTATTATTAT
* *
98457371 TATTATTATTATATAGTAGTGTG
1 TATTTTTATTATATAGTAGTGTA
*
98457394 TATTTTTATTACATACGTA-TGTA
1 TATTTTTATTATATA-GTAGTGTA
*
98457417 TATATTTA-TATATAGTAGT
1 TATTTTTATTATATAGTAGT
98457436 ATTATTTACT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 3 0.09
22 6 0.17
23 23 0.66
24 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.52
Consensus pattern (23 bp):
TATTTTTATTATATAGTAGTGTA
Found at i:98457549 original size:16 final size:16
Alignment explanation
Indices: 98457530--98457591 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 16
98457520 TTCATCTTCT
98457530 TATTACTCATCTATTA
1 TATTACTCATCTATTA
* *
98457546 TATTTCTTATCTATTTA
1 TATTACTCATCTA-TTA
*
98457563 TATT-TTCAT-TATTA
1 TATTACTCATCTATTA
*
98457577 TACTA--CATCTATTA
1 TATTACTCATCTATTA
98457591 T
1 T
98457592 TTATTGGTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 3 0.08
14 12 0.32
15 2 0.05
16 14 0.37
17 7 0.18
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTACTCATCTATTA
Found at i:98457825 original size:23 final size:22
Alignment explanation
Indices: 98457799--98457842 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
98457789 TTTATGTATA
*
98457799 TATTATGTATATATCTTTAATAT
1 TATTACGTATATAT-TTTAATAT
98457822 TATTACGTATATATTTTAATA
1 TATTACGTATATATTTTAATA
98457843 CCATACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TATTACGTATATATTTTAATAT
Found at i:98457932 original size:14 final size:15
Alignment explanation
Indices: 98457913--98457942 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
98457903 TTCGTTATCA
98457913 TTTGCCAT-TTTTAT
1 TTTGCCATGTTTTAT
98457927 TTTGCCATGTTTTAT
1 TTTGCCATGTTTTAT
98457942 T
1 T
98457943 CACTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTGCCATGTTTTAT
Found at i:98462653 original size:39 final size:38
Alignment explanation
Indices: 98462595--98462674 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 38
98462585 TGGCAGACAT
98462595 AGCCACAGATAGAATCACTTTACAGAATATTGAGAAAA
1 AGCCACAGATAGAATCACTTTACAGAATATTGAGAAAA
98462633 AGCCTACAGATAGAATCACTTTACAGAATATTGAGAAAA
1 AGCC-ACAGATAGAATCACTTTACAGAATATTGAGAAAA
98462672 AGC
1 AGC
98462675 ATAATGAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.10
39 37 0.90
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.21
Consensus pattern (38 bp):
AGCCACAGATAGAATCACTTTACAGAATATTGAGAAAA
Found at i:98470025 original size:84 final size:86
Alignment explanation
Indices: 98469838--98470075 Score: 220
Period size: 86 Copynumber: 2.8 Consensus size: 86
98469828 AACCTTATCT
* * * * * * * **
98469838 CCCTAAGCAGTAGGGTAACAGACCG--AATTGCAGATCTTATCTCCCT-AAGCAGTAGCGGAGTA
1 CCCTAAGCAGTAAGGTAACAGGCTGAAAATTACAGATCTTATCGCCCTGAAGTAGTAGTGGAACA
*
98469900 GATCGAAA-ACGGAGGGCCTTAACC
66 GAT-TAAAGAC-GA--GCCTTAACC
* * *
98469924 CCCTAAGCAGTAGGGTAACAGGCTG-AATTTATAGATCTTATCGCCCT-AAGTAGTAG-GGAAAC
1 CCCTAAGCAGTAAGGTAACAGGCTGAAAATTACAGATCTTATCGCCCTGAAGTAGTAGTGG-AAC
98469986 AGATTAAAGACGAGCCTTAACC
65 AGATTAAAGACGAGCCTTAACC
* * * * *
98470008 TCCTAAGCAGTAAGGTAATAGGCTGAAAATTACAGATCTTGTCTCCCTGAAGTTGTAGTGGAACA
1 CCCTAAGCAGTAAGGTAACAGGCTGAAAATTACAGATCTTATCGCCCTGAAGTAGTAGTGGAACA
98470073 GAT
66 GAT
98470076 CGAATCCAAC
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
84 31 0.24
85 18 0.14
86 45 0.35
87 34 0.27
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (86 bp):
CCCTAAGCAGTAAGGTAACAGGCTGAAAATTACAGATCTTATCGCCCTGAAGTAGTAGTGGAACA
GATTAAAGACGAGCCTTAACC
Found at i:98470261 original size:43 final size:42
Alignment explanation
Indices: 98470185--98470284 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 42
98470175 AGCTTTAACC
*
98470185 CCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGACCTTAAAT
1 CCCTAAGCAGTAGGGTAACAAGCCAAATGTACAGACC-TAAAT
* * *** *
98470228 CCCTAACCAGTAGGGTAACAGGTTGAATGTACAGATCTAAAT
1 CCCTAAGCAGTAGGGTAACAAGCCAAATGTACAGACCTAAAT
98470270 CGCCTAAGCAGTAGG
1 C-CCTAAGCAGTAGG
98470285 AAAACAGATC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAAGCCAAATGTACAGACCTAAAT
Found at i:98471968 original size:17 final size:18
Alignment explanation
Indices: 98471946--98472018 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 18
98471936 TTTCTTTTAC
98471946 TACTATTTATTA-TATTT
1 TACTATTTATTATTATTT
*
98471963 TACTATTATAGTTATTTTTT
1 TACTATT-TA-TTATTATTT
* *
98471983 CTACTACTTTGTTATTATTG
1 -TACTA-TTTATTATTATTT
98472003 TACTA-TTATTATTATT
1 TACTATTTATTATTATT
98472019 GCCAGTAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
17 17 0.37
18 2 0.04
19 8 0.17
20 11 0.24
21 6 0.13
22 2 0.04
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.62
Consensus pattern (18 bp):
TACTATTTATTATTATTT
Done.