Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 302 of 356
Found at i:98472017 original size:20 final size:20
Alignment explanation
Indices: 98471929--98472018 Score: 71
Period size: 20 Copynumber: 4.5 Consensus size: 20
98471919 TTAGATAATT
*
98471929 TTATTATT-TTCTTTTACTA
1 TTATTATTATTATTTTACTA
*
98471948 CTATTTATTA-TATTTTACTA
1 TTA-TTATTATTATTTTACTA
*
98471968 TTA-TAGTTATTTTTTCTACTA
1 TTATTA-TTATTATTT-TACTA
* * *
98471989 CT-TTGTTATTATTGTACTA
1 TTATTATTATTATTTTACTA
98472008 TTATTATTATT
1 TTATTATTATT
98472019 GCCAGTAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
18 2 0.04
19 11 0.20
20 34 0.63
21 7 0.13
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.63
Consensus pattern (20 bp):
TTATTATTATTATTTTACTA
Found at i:98472018 original size:40 final size:40
Alignment explanation
Indices: 98471929--98472018 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
98471919 TTAGATAATT
*
98471929 TTATTATT-TTCTTTTACTACTATTTATTATATTTTACTA
1 TTATTATTATTCTTTTACTACTATTTATTATATTGTACTA
*
98471968 TTA-TAGTTATT-TTTT-CTACTACTTTGTTATTATTGTACTA
1 TTATTA-TTATTCTTTTACTACTA-TTTATTA-TATTGTACTA
98472008 TTATTATTATT
1 TTATTATTATT
98472019 GCCAGTAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
38 8 0.18
39 15 0.34
40 19 0.43
41 2 0.05
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.63
Consensus pattern (40 bp):
TTATTATTATTCTTTTACTACTATTTATTATATTGTACTA
Found at i:98472080 original size:3 final size:3
Alignment explanation
Indices: 98472074--98472127 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
98472064 ATTATTTTCG
* * * *
98472074 TAT TAT TAT CAT TAT TAC TAT TAT TA- TATT TAC TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
98472119 TAT TAT TAT
1 TAT TAT TAT
98472128 ATGTTAGTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:98472236 original size:3 final size:3
Alignment explanation
Indices: 98472223--98472254 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
98472213 CCTTTTGCAT
98472223 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA T
98472255 ATAGTAGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:98472274 original size:23 final size:22
Alignment explanation
Indices: 98472243--98472314 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 22
98472233 TTATTATTAT
*
98472243 TATTATTATTATATAGTAGTGTA
1 TATTTTTATTATATAGTA-TGTA
*
98472266 TATTTTTATTACATACGTATGTA
1 TATTTTTATTATATA-GTATGTA
* *
98472289 TATATTTA-GATATAGTAT-TA
1 TATTTTTATTATATAGTATGTA
98472309 TTATTT
1 -TATTT
98472315 ACTTCACTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
20 2 0.05
21 8 0.20
22 4 0.10
23 24 0.59
24 3 0.07
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (22 bp):
TATTTTTATTATATAGTATGTA
Found at i:98472696 original size:20 final size:19
Alignment explanation
Indices: 98472673--98472714 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
98472663 TTTTATGTAT
*
98472673 ATATTATGTATATATCTTTA
1 ATATTACGTATATAT-TTTA
98472693 ATATTACGTATATATTTTA
1 ATATTACGTATATATTTTA
98472712 ATA
1 ATA
98472715 CCATACATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (19 bp):
ATATTACGTATATATTTTA
Found at i:98472804 original size:14 final size:15
Alignment explanation
Indices: 98472785--98472814 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
98472775 TTCGTTATCA
98472785 TTTGCCAT-TTTTAT
1 TTTGCCATGTTTTAT
98472799 TTTGCCATGTTTTAT
1 TTTGCCATGTTTTAT
98472814 T
1 T
98472815 CACTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTGCCATGTTTTAT
Found at i:98474583 original size:14 final size:14
Alignment explanation
Indices: 98474564--98474614 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
98474554 AGCTACTTAG
98474564 TTTATTAACACTTT
1 TTTATTAACACTTT
* *
98474578 TTTATTGACAATTTT
1 TTTATTAAC-ACTTT
98474593 ATATTATTAACACTTT
1 -T-TTATTAACACTTT
98474609 TTTATT
1 TTTATT
98474615 GACAATTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 13 0.43
15 5 0.17
16 5 0.17
17 7 0.23
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (14 bp):
TTTATTAACACTTT
Found at i:98474600 original size:31 final size:31
Alignment explanation
Indices: 98474565--98474629 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
98474555 GCTACTTAGT
*
98474565 TTATTAACACTTTTTTATTGACAATTTTATA
1 TTATTAACACTTTTTTATTGACAATTATATA
98474596 TTATTAACACTTTTTTATTGACAATTATATA
1 TTATTAACACTTTTTTATTGACAATTATATA
98474627 TTA
1 TTA
98474630 AATAAAGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (31 bp):
TTATTAACACTTTTTTATTGACAATTATATA
Found at i:98474614 original size:17 final size:17
Alignment explanation
Indices: 98474565--98474614 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
98474555 GCTACTTAGT
98474565 TTATTAACAC--TTTT-
1 TTATTAACACTTTTTTA
* * *
98474579 TTATTGACAATTTTATA
1 TTATTAACACTTTTTTA
98474596 TTATTAACACTTTTTTA
1 TTATTAACACTTTTTTA
98474613 TT
1 TT
98474615 GACAATTATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 8 0.30
16 3 0.11
17 16 0.59
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (17 bp):
TTATTAACACTTTTTTA
Found at i:98480060 original size:44 final size:43
Alignment explanation
Indices: 98479954--98480074 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 43
98479944 GTAATTCAGT
* * * * *
98479954 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAATTAGAT
1 ATCGATGCCTATGTCCCAGACACGGTTTTACACGAAATTACAA
* * * * *
98479997 AT-GATGCCGATGTCTCAGACATGGTTTTACACGTAATTCTCAA
1 ATCGATGCCTATGTCCCAGACACGGTTTTACACGAAATT-ACAA
* *
98480040 ATCGAGGCCTATGTCCCAGACACAGTTTTACACGA
1 ATCGATGCCTATGTCCCAGACACGGTTTTACACGA
98480075 TATCTCAGAT
Statistics
Matches: 61, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 30 0.49
43 5 0.08
44 26 0.43
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ATCGATGCCTATGTCCCAGACACGGTTTTACACGAAATTACAA
Found at i:98482180 original size:581 final size:581
Alignment explanation
Indices: 98481077--98482819 Score: 3362
Period size: 581 Copynumber: 3.0 Consensus size: 581
98481067 TAACCCCATT
* *
98481077 AACAATTAGCATACAACTTCTGCATTTTACGCGATTAAGTCCTTTTTGTAAAATTGAGCATAGAA
1 AACAATTAGCATACAACTTCTGCATTTTACGCTATTAAGTCCTTTTTGTAAAATTGAGCACAGAA
98481142 ACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATAA
66 ACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATAA
*
98481207 TATTAAAATATTTTTTAGAATCAGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAAC
131 TATTAAAATATTTTTTAGAATCGGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAAC
98481272 CGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTGT
196 CGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTGT
98481337 TCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGAT
261 TCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGAT
98481402 GTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAAG
326 GTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAAG
98481467 GAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGCGATTCTAGATT
391 GAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGCGATTCTAGATT
98481532 CGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTTA
456 CGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTTA
*
98481597 ATGAAAGTGTGAATTTAGAATAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
521 ATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
98481658 AACAATTAGCATACAACTTCTGCATTTTACGCTATTAAGTCCTTTTTGTAAAATTGAGCACAGAA
1 AACAATTAGCATACAACTTCTGCATTTTACGCTATTAAGTCCTTTTTGTAAAATTGAGCACAGAA
*
98481723 ACAGAAAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATAA
66 ACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATAA
98481788 TATTAAAATATTTTTTAGAATCGGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAAC
131 TATTAAAATATTTTTTAGAATCGGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAAC
98481853 CGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTGT
196 CGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTGT
98481918 TCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGAT
261 TCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGAT
98481983 GTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAAG
326 GTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAAG
*
98482048 GAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGTGATTCTAGATT
391 GAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGCGATTCTAGATT
*
98482113 CGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACAAATTCTGGCAGATTAAATGGAGTTA
456 CGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTTA
98482178 ATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
521 ATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
* *
98482239 AACAATTAGCATACAACTTCTGCATTTTACG-TGATTAAGTCTTTTTTGTAAAATTGAGCACATA
1 AACAATTAGCATACAACTTCTGCATTTTACGCT-ATTAAGTCCTTTTTGTAAAATTGAGCACAGA
*
98482303 AACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAAAAACATAAAATA
65 AACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATA
*
98482368 ATATTAAAATATTTTTTAGAATCGATTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAA
130 ATATTAAAATATTTTTTAGAATCGGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAA
98482433 CCGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTG
195 CCGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTG
98482498 TTCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGA
260 TTCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGA
98482563 TGTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAA
325 TGTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAA
*
98482628 GGAAAACTCGATTAGTTATGAAACCCAGTAGTGTCACAAACAAAGATGTGGCAGCGATTCTAGAT
390 GGAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGCGATTCTAGAT
98482693 TCGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTT
455 TCGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTT
98482758 AATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
520 AATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
98482820 TAAGGTAGGG
Statistics
Matches: 1146, Mismatches: 15, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
580 1 0.00
581 1145 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (581 bp):
AACAATTAGCATACAACTTCTGCATTTTACGCTATTAAGTCCTTTTTGTAAAATTGAGCACAGAA
ACAGACAAATTAAATCACAGAAACATCACAGATAAAAATTCACATATCACAGAAACATAAAATAA
TATTAAAATATTTTTTAGAATCGGTTACGTGGTCTTGAAACCACTATTCTGGCTAGGGTCTAAAC
CGGACTGTTACAGGTGGGCTGTTTCAAATGTGGTTATTTTGGGCACAACCGCGACAACTGCTTGT
TCAAGTTTGGCAAAGGGAGTTCACTAGTGATTGGAGGGGAACAAATACTCTCGAGAGAGACAGAT
GTGTAGTGGAAAGTGGAGGAAGAACAATTTAGATCATGGATGCTTGTTGAGCATAAGAATAGAAG
GAAAACTCGATTAGTTATGAAACCCAGTAGTGCCACAAACAAAGATGTGGCAGCGATTCTAGATT
CGAAGTGCTTAATAAAAATCACGGGGAGAAAATTAGAACGAATTCTGGCAGATTAAATGGAGTTA
ATGAAAGTGTGAATTTAGAAGAGGAAGAATTGGGGATTGCTAGCACATTTAAGAAATCAGA
Found at i:98492310 original size:16 final size:16
Alignment explanation
Indices: 98492289--98492322 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
98492279 ATGGTCTGAA
98492289 AAGGATAGGATTAAAC
1 AAGGATAGGATTAAAC
98492305 AAGGATAGGATTAAAC
1 AAGGATAGGATTAAAC
98492321 AA
1 AA
98492323 AAATACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.06, G:0.24, T:0.18
Consensus pattern (16 bp):
AAGGATAGGATTAAAC
Found at i:98492657 original size:16 final size:16
Alignment explanation
Indices: 98492635--98492690 Score: 87
Period size: 16 Copynumber: 3.5 Consensus size: 16
98492625 CGTTTGGTTG
98492635 GCTGTAATGGAATAG-
1 GCTGTAATGGAATAGA
*
98492650 GACTGTAATTGAATAGA
1 G-CTGTAATGGAATAGA
98492667 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
98492683 GCTGTAAT
1 GCTGTAAT
98492691 AAGTAATTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 1 0.03
16 35 0.95
17 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:98492725 original size:46 final size:44
Alignment explanation
Indices: 98492672--98492765 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
98492662 ATAGAGCTGT
*
98492672 AATGGAATAGAGCTGTAATAAGTAATTCAAT-TGTTTGGTTGAATAG
1 AATGGAATAGAACTGTAAT-AGT-ATTC-ATGTGTTTGGTTGAATAG
* *
98492718 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATAG
98492762 AATG
1 AATG
98492766 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.50
45 3 0.07
46 18 0.41
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATAG
Found at i:98492959 original size:17 final size:17
Alignment explanation
Indices: 98492937--98492969 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
98492927 AATTATTATT
98492937 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
98492954 AAATATAATTTAATAA
1 AAATATAATTTAATAA
98492970 CATTATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:98492980 original size:22 final size:21
Alignment explanation
Indices: 98492931--98492985 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 21
98492921 TAACATAATT
98492931 ATTATTAAATATAATTTAATAA
1 ATTATT-AATATAATTTAATAA
98492953 A--A--AATATAATTTAATAA
1 ATTATTAATATAATTTAATAA
98492970 CATTATTAATATAATT
1 -ATTATTAATATAATT
98492986 ATTATTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
17 15 0.54
18 1 0.04
20 2 0.07
22 10 0.36
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTATTAATATAATTTAATAA
Found at i:98492993 original size:58 final size:57
Alignment explanation
Indices: 98492870--98492992 Score: 155
Period size: 58 Copynumber: 2.2 Consensus size: 57
98492860 TTTTAATAAG
* *
98492870 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACTATATTTTAACATA
1 ATTATTATTAAAAATAATTTAATAAAAATAAT-AATAATTTAACTACATTTTAACATA
* *
98492928 ATTATTATTAAATATAATTTAAT-AAAA-AAT-ATAATTTAA-TAACATTATTAATATA
1 ATTATTATTAAAAATAATTTAATAAAAATAATAATAATTTAACT-ACATT-TTAACATA
98492983 ATTATTATTA
1 ATTATTATTA
98492993 TATGAATTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
53 1 0.02
54 12 0.20
55 17 0.29
56 3 0.05
57 4 0.07
58 22 0.37
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (57 bp):
ATTATTATTAAAAATAATTTAATAAAAATAATAATAATTTAACTACATTTTAACATA
Found at i:98497736 original size:2 final size:2
Alignment explanation
Indices: 98497731--98497760 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
98497721 AAAAAATATT
98497731 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
98497761 CAAATCTGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:98503478 original size:558 final size:560
Alignment explanation
Indices: 98502406--98503519 Score: 1655
Period size: 558 Copynumber: 2.0 Consensus size: 560
98502396 TAGAAGTATT
* * ** **
98502406 AAAGCTACTGGAAATTTGAGTCCACCATCTGACTCACTTGAAGAAAATGTTCAACCACGTTAAGA
1 AAAGCTACTAGAAATTCGAGTCCACCATCAAACTCACTTGAAGAAAATGTTCAACCACCCTAAGA
* * * * *
98502471 TGGTCAACGTAATAGGTAATGTTGTACTTACACTGTGCTAATAGAAGCATGACTACGAGGGTCTT
66 CGATCAACGTAATAGGTAATGTTATACTTACACTGTGCTAACAGAAGCACGACTACGAGGGTCTT
* * * *
98502536 TGAACTTTTCAACCCTGGAGCATCACGTAAAATACGACAACATTTGGCAACGTTCACTCTCGATC
131 TGAACTTTGCAACCCTGGAGCATCACGCAAAATACGACAAAATTTGGCAACGATCACTCTCGATC
*
98502601 TATAAAGAAATTGATCTTTACACTCTTGATATGCTTAATATACGTGATGTCGTATTGAACTATTT
196 TATAAAGAAATTGATCTTTACACTATTGATATGCTTAATATACGTGATGTCGTATTGAACTATTT
* * * *
98502666 TGATGCTATTGGTTGGAATTCATTTTCAAATGTTTCATGTGCTGCATATTATGAACTAGTTTATG
261 TGATACAATTGGTTGGAATTCATTTTCAAATATTTCATGTGCTGCATATTATGAACTAGTCTATG
** * * *
98502731 AGTTTTATGCAATATTTAACTTCAATATTAATTCATTGCGAACTGTTAAAACTCATGATGTTGTC
326 AGTTCAATGCAACATTTAACTTCAATATTAATGCATTGCAAACTGTTAAAACTCATGATGTTGTC
*
98502796 TGTTTTCAATTACTTGGTAAATATTTTAGAATGTCAATTTCAGATTTTAACATCATCATAGGTTT
391 TATTTTCAATTACTTGGTAAATATTTTAGAATGTCAATTTCAGATTTTAACATCATCATAGGTTT
* *
98502861 CGCTAACCCTGATGATGTTCAAACTAATTCCTACCATACAGATTTATTAAATATACCAAGTAATT
456 CGCTAACCCTAATGATGTTCAAACTAATCCCTACCATACAGATTTATTAAATATACCAAGTAATT
* *
98502926 TCGATG-TAATGTTGCTTATTCTACTTTAACTCAATCTAG
521 TCGATGTTAATGCTACTTATTCTACTTTAACTCAATCTAG
* * * * * *
98502965 AAAGCTGCTAGAAATTCGAGTCCACTATCAAACTCGCTTGAAGAAAATGTTTAGCCACCCTAGGA
1 AAAGCTACTAGAAATTCGAGTCCACCATCAAACTCACTTGAAGAAAATGTTCAACCACCCTAAGA
* * *
98503030 CGATCAACGTAATAGGTAATGTTATACTTGCACTGTGCTGACAGAAGCACGACTACGAGGTTCTT
66 CGATCAACGTAATAGGTAATGTTATACTTACACTGTGCTAACAGAAGCACGACTACGAGGGTCTT
* * * *
98503095 TGAACTTTGCAACCTTGGAGCATCGCGCAAGATACGACAAAATTTGGCAATGATCACTCTCGATC
131 TGAACTTTGCAACCCTGGAGCATCACGCAAAATACGACAAAATTTGGCAACGATCACTCTCGATC
* *
98503160 TGT-GAGAAAATTGATCTTTACAC-ATTGATATGCTTAATATACGTGATG-CTGTATTGAACTAT
196 TATAAAG-AAATTGATCTTTACACTATTGATATGCTTAATATACGTGATGTC-GTATTGAACTAT
* *
98503222 TTTGATACAATTGGTTGGAATTCGTTTGT-AAATATTTCTTGTGCTGCATATTATGAACTAGTCT
259 TTTGATACAATTGGTTGGAATTCATTT-TCAAATATTTCATGTGCTGCATATTATGAACTAGTCT
*
98503286 ATGAGTTCAATGCAACATTTAACTTCAATATTAATGCATTGTAAACTGTTAAAACTCATGATGTT
323 ATGAGTTCAATGCAACATTTAACTTCAATATTAATGCATTGCAAACTGTTAAAACTCATGATGTT
* * * * *
98503351 GTCTATTTTCGATTACTTGGTAAATATTTTAGAATGTCAATTTTAGATTTTAACATCGTTATGGG
388 GTCTATTTTCAATTACTTGGTAAATATTTTAGAATGTCAATTTCAGATTTTAACATCATCATAGG
*
98503416 TTTTGCTAACCCTAATGATGTTCAAACTAATCCCTACCATACA-ACTTTATTAAATATACCAAGT
453 TTTCGCTAACCCTAATGATGTTCAAACTAATCCCTACCATACAGA-TTTATTAAATATACCAAGT
*
98503480 AATTTCGATGTTAATGCTACTTATTCTGCTTTAACTCAAT
517 AATTTCGATGTTAATGCTACTTATTCTACTTTAACTCAAT
98503520 TTGGGAATCA
Statistics
Matches: 495, Mismatches: 55, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
557 2 0.00
558 281 0.57
559 212 0.43
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (560 bp):
AAAGCTACTAGAAATTCGAGTCCACCATCAAACTCACTTGAAGAAAATGTTCAACCACCCTAAGA
CGATCAACGTAATAGGTAATGTTATACTTACACTGTGCTAACAGAAGCACGACTACGAGGGTCTT
TGAACTTTGCAACCCTGGAGCATCACGCAAAATACGACAAAATTTGGCAACGATCACTCTCGATC
TATAAAGAAATTGATCTTTACACTATTGATATGCTTAATATACGTGATGTCGTATTGAACTATTT
TGATACAATTGGTTGGAATTCATTTTCAAATATTTCATGTGCTGCATATTATGAACTAGTCTATG
AGTTCAATGCAACATTTAACTTCAATATTAATGCATTGCAAACTGTTAAAACTCATGATGTTGTC
TATTTTCAATTACTTGGTAAATATTTTAGAATGTCAATTTCAGATTTTAACATCATCATAGGTTT
CGCTAACCCTAATGATGTTCAAACTAATCCCTACCATACAGATTTATTAAATATACCAAGTAATT
TCGATGTTAATGCTACTTATTCTACTTTAACTCAATCTAG
Found at i:98504254 original size:22 final size:22
Alignment explanation
Indices: 98504229--98504271 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
98504219 TTAGTAAGTG
98504229 TGCATGATTGGTTT-TCTTTTGT
1 TGCATGATT-GTTTCTCTTTTGT
98504251 TGCATGATTGTTTCTCTTTTG
1 TGCATGATTGTTTCTCTTTTG
98504272 CATGTGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (22 bp):
TGCATGATTGTTTCTCTTTTGT
Found at i:98509050 original size:17 final size:18
Alignment explanation
Indices: 98509017--98509050 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
98509007 TATGATTTGA
*
98509017 TAAATGATAATATAATTT
1 TAAATGATAATAAAATTT
98509035 TAAATGA-AATAAAATT
1 TAAATGATAATAAAATT
98509051 AAATAGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
TAAATGATAATAAAATTT
Found at i:98509052 original size:15 final size:15
Alignment explanation
Indices: 98509034--98509068 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
98509024 TAATATAATT
98509034 TTAAAT-GAAATAAAA
1 TTAAATAGAAA-AAAA
98509049 TTAAATAGAAAAAAA
1 TTAAATAGAAAAAAA
98509064 TTAAA
1 TTAAA
98509069 ATATTCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
TTAAATAGAAAAAAA
Found at i:98509825 original size:18 final size:20
Alignment explanation
Indices: 98509789--98509828 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
98509779 GATTAGTGTA
*
98509789 AATTATAATAAAATCTAATT
1 AATTATAATAAAATATAATT
98509809 AATTATAA-AAAA-ATAATT
1 AATTATAATAAAATATAATT
98509827 AA
1 AA
98509829 GAGAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 4 0.21
20 8 0.42
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (20 bp):
AATTATAATAAAATATAATT
Found at i:98531572 original size:80 final size:79
Alignment explanation
Indices: 98531439--98531594 Score: 249
Period size: 80 Copynumber: 2.0 Consensus size: 79
98531429 TGATTGGCAT
* * *
98531439 GAACATTGTTATTAATATAGGAGAACGTGAATTCGAGTGCGTTGAAGCACATTATCCTTCTAATT
1 GAACATTGTTATCAATACAGGAGAACGTGAATTCGAGTGCATTGAAGCACATTATCCTTCTAATT
98531504 ATGGGTTAGGGAGGA
66 ATGGGTT-GGGAGGA
* * *
98531519 GAACATTGTTGTCAATACAGGAGAATGTGGATTCGAGTGCATTGAAGCACATTATCCTTCTAATT
1 GAACATTGTTATCAATACAGGAGAACGTGAATTCGAGTGCATTGAAGCACATTATCCTTCTAATT
98531584 ATGGGTTGGGA
66 ATGGGTTGGGA
98531595 AAGAGCTATA
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 4 0.06
80 66 0.94
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (79 bp):
GAACATTGTTATCAATACAGGAGAACGTGAATTCGAGTGCATTGAAGCACATTATCCTTCTAATT
ATGGGTTGGGAGGA
Found at i:98533639 original size:19 final size:17
Alignment explanation
Indices: 98533605--98533722 Score: 51
Period size: 17 Copynumber: 6.4 Consensus size: 17
98533595 TAGAAAAATT
98533605 ATAAAAATTTCAAAAAA
1 ATAAAAATTTCAAAAAA
*
98533622 ATAAAAATATTACTAAAATA
1 ATAAAAAT-TT-C-AAAAAA
* *
98533642 TTATAAATTTTCAAAAAA
1 ATA-AAAATTTCAAAAAA
**
98533660 TTTATTCGAAATTAT-AAAAAA
1 ---A-TAAAAATT-TCAAAAAA
* *
98533681 TTAAGAAGTTT-AAAAAA
1 ATAA-AAATTTCAAAAAA
*
98533698 TATAAGAATTTCAAAAAA
1 -ATAAAAATTTCAAAAAA
98533716 ATAAAAA
1 ATAAAAA
98533723 ATAGTAACCC
Statistics
Matches: 73, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
17 26 0.36
18 20 0.27
19 2 0.03
20 9 0.12
21 14 0.19
22 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (17 bp):
ATAAAAATTTCAAAAAA
Found at i:98533703 original size:18 final size:17
Alignment explanation
Indices: 98533669--98533719 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
98533659 ATTTATTCGA
98533669 AATTATAAAAAAT-TAAG
1 AATT-TAAAAAATATAAG
98533686 AAGTTTAAAAAATATAAG
1 AA-TTTAAAAAATATAAG
98533704 AATTTCAAAAAA-ATAA
1 AATTT-AAAAAATATAA
98533720 AAAATAGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (17 bp):
AATTTAAAAAATATAAG
Found at i:98535046 original size:29 final size:26
Alignment explanation
Indices: 98535005--98535081 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 26
98534995 TTTGTAAGTT
*
98535005 TTTATAATATTTTGAATTTTTATTATAA
1 TTTATAAAATTTTGAA-TTTT-TTATAA
**
98535033 TTTAGTAAAATTTTTTATTTTTTATAA
1 TTTA-TAAAATTTTGAATTTTTTATAA
* * *
98535060 TTT-TTAAATTTTTAATATTTTA
1 TTTATAAAATTTTGAATTTTTTA
98535082 AAAGTTTTTC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
25 16 0.38
27 9 0.21
28 8 0.19
29 9 0.21
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TTTATAAAATTTTGAATTTTTTATAA
Found at i:98535070 original size:18 final size:18
Alignment explanation
Indices: 98535049--98535100 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
98535039 AAAATTTTTT
*
98535049 ATTTTTTATAATTTTTAA
1 ATTTTTAATAATTTTTAA
*
98535067 ATTTTTAAT-ATTTTAAA
1 ATTTTTAATAATTTTTAA
* *
98535084 AGTTTTTCATAGTTTTT
1 A-TTTTTAATAATTTTT
98535101 TAAAACTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
17 8 0.30
18 15 0.56
19 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (18 bp):
ATTTTTAATAATTTTTAA
Found at i:98535787 original size:6 final size:6
Alignment explanation
Indices: 98535776--98535809 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
98535766 AGCTGTGATG
* *
98535776 GTTTTA GTTTTA GTTTTA GTTTTA ATTTAA GTTT
1 GTTTTA GTTTTA GTTTTA GTTTTA GTTTTA GTTT
98535810 ACTAAAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.65
Consensus pattern (6 bp):
GTTTTA
Found at i:98537335 original size:9 final size:9
Alignment explanation
Indices: 98537307--98537344 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
98537297 TAAATTTTAC
98537307 AATTCGAAT
1 AATTCGAAT
* *
98537316 AATTTGGAT
1 AATTCGAAT
98537325 AATTCGAAT
1 AATTCGAAT
98537334 AATTCGAAT
1 AATTCGAAT
98537343 AA
1 AA
98537345 CAGATTGGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (9 bp):
AATTCGAAT
Found at i:98537438 original size:11 final size:12
Alignment explanation
Indices: 98537416--98537448 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
98537406 TTAGCAACAA
98537416 AAATTACAAAAT
1 AAATTACAAAAT
98537428 AAATT-CAAAAT
1 AAATTACAAAAT
98537439 AAATTTACAA
1 AAA-TTACAA
98537449 GATTCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.47
12 7 0.37
13 3 0.16
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (12 bp):
AAATTACAAAAT
Found at i:98537528 original size:10 final size:10
Alignment explanation
Indices: 98537513--98537551 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
98537503 TTTTTAATTT
98537513 TTTAAAAAAA
1 TTTAAAAAAA
98537523 TTTAAAAAAA
1 TTTAAAAAAA
*
98537533 TTCAAAAAAA
1 TTTAAAAAAA
*
98537543 TATAAAAAA
1 TTTAAAAAA
98537552 GTTAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:98541182 original size:34 final size:35
Alignment explanation
Indices: 98541124--98541190 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
98541114 CAAACACCAG
* * *
98541124 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
98541159 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
98541191 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:98550913 original size:62 final size:62
Alignment explanation
Indices: 98550816--98550940 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
98550806 GATGTGAACT
98550816 TCCAACAAGACTAATGCTTACAGACAACTCGACAGAACTATCTCGAAACAATGCGAGGAGGA
1 TCCAACAAGACTAATGCTTACAGACAACTCGACAGAACTATCTCGAAACAATGCGAGGAGGA
98550878 TCCAACAAGACTAATGCTTACAGACAACTCGACAGAACTATCTCGAAACAATGCGAGGAGGA
1 TCCAACAAGACTAATGCTTACAGACAACTCGACAGAACTATCTCGAAACAATGCGAGGAGGA
98550940 T
1 T
98550941 TACTTCCCTC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (62 bp):
TCCAACAAGACTAATGCTTACAGACAACTCGACAGAACTATCTCGAAACAATGCGAGGAGGA
Found at i:98551208 original size:25 final size:23
Alignment explanation
Indices: 98551171--98551216 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
98551161 CGCAATCAAA
98551171 AGGAAAAATAAAGGAAAAGAGAAAC
1 AGGAAAAATAAA-G-AAAGAGAAAC
98551196 AGGAAAGAA-AAAGAAAGAGAA
1 AGGAAA-AATAAAGAAAGAGAA
98551217 CAGAAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 9 0.45
26 2 0.10
ACGTcount: A:0.70, C:0.02, G:0.26, T:0.02
Consensus pattern (23 bp):
AGGAAAAATAAAGAAAGAGAAAC
Found at i:98560687 original size:38 final size:38
Alignment explanation
Indices: 98560636--98560713 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
98560626 TAATTCCACC
98560636 ACAGAACCTTAACTAACATAATGGACTTCCTCCTCAGA
1 ACAGAACCTTAACTAACATAATGGACTTCCTCCTCAGA
98560674 ACAGAACCTTAACTAACATAATGGACTTCCTCCTCAGA
1 ACAGAACCTTAACTAACATAATGGACTTCCTCCTCAGA
98560712 AC
1 AC
98560714 CTTAATATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (38 bp):
ACAGAACCTTAACTAACATAATGGACTTCCTCCTCAGA
Found at i:98567013 original size:47 final size:47
Alignment explanation
Indices: 98566956--98567338 Score: 550
Period size: 47 Copynumber: 8.1 Consensus size: 47
98566946 TTAGGATTTT
** * * *
98566956 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
98567003 ATATGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATA--TGTGATAAGGCCGAATGGCCA
*
98567054 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
98567101 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
98567148 ATGTGATGAATGTGAACATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
98567195 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
98567242 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
98567289 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
98567336 ATG
1 ATG
98567339 CGAAATGTGT
Statistics
Matches: 311, Mismatches: 21, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
47 263 0.85
49 11 0.04
51 37 0.12
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:98567131 original size:25 final size:25
Alignment explanation
Indices: 98567102--98567226 Score: 63
Period size: 25 Copynumber: 5.2 Consensus size: 25
98567092 GAATGGCCAA
98567102 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
98567127 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
*
98567149 TGTGATGAATGTGAACATACGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
98567174 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
98567196 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
98567221 TGTGAT
1 TGTGAT
98567227 AAGGCCGAAT
Statistics
Matches: 68, Mismatches: 18, Indels: 28
0.60 0.16 0.25
Matches are distributed among these distances:
22 16 0.24
23 15 0.22
24 15 0.22
25 22 0.32
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:98567443 original size:46 final size:46
Alignment explanation
Indices: 98567312--98567448 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
98567302 GAACATGTAT
* * *
98567312 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
98567358 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGCGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * *
98567404 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
98567449 TGTATATACA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:98567663 original size:37 final size:37
Alignment explanation
Indices: 98567622--98567703 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
98567612 GATGACCATA
* *
98567622 TGTGGTGACTATGTCCGGGTAAGACCCGATGACTACG
1 TGTGGAGACTATGTCCGGGTAAGACCCGATAACTACG
* * * *
98567659 TGTGGAGATTTTGTTCGGGTAAGACCCGATAACTTCG
1 TGTGGAGACTATGTCCGGGTAAGACCCGATAACTACG
98567696 TGTGGAGA
1 TGTGGAGA
98567704 TTTCATCTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (37 bp):
TGTGGAGACTATGTCCGGGTAAGACCCGATAACTACG
Found at i:98572660 original size:46 final size:46
Alignment explanation
Indices: 98572608--98572737 Score: 251
Period size: 46 Copynumber: 2.8 Consensus size: 46
98572598 TTCATGTCAC
98572608 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAT
*
98572654 GTTGCCATGATATCTTTCAACCATGGTCTTACACATTTTATATCAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAT
98572700 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
98572738 GAATCGCGAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAT
Found at i:98572771 original size:45 final size:46
Alignment explanation
Indices: 98572595--98572782 Score: 182
Period size: 46 Copynumber: 4.1 Consensus size: 46
98572585 CATAGTCTTT
* * * * *
98572595 CATTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 CATTTGATATCACGATGCCATAGCATCTTTCAACCATGGTCTTACA
* * * *
98572641 CATTTTATATCATGTTGCCAT-GATATCTTTCAACCATGGTCTTACA
1 CATTTGATATCACGATGCCATAG-CATCTTTCAACCATGGTCTTACA
* * * * *
98572687 CATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 CATTTGATATCACGATGCCATAGCATCTTTCAACCATGGTCTTACA
* * * * *
98572733 CATTTGA-ATCGCGATGCCATAGCGTCTTTCAGCTATGGTCTTACT
1 CATTTGATATCACGATGCCATAGCATCTTTCAACCATGGTCTTACA
98572778 CATTT
1 CATTT
98572783 ATGGTATGAT
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
45 35 0.28
46 91 0.72
47 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (46 bp):
CATTTGATATCACGATGCCATAGCATCTTTCAACCATGGTCTTACA
Found at i:98572844 original size:33 final size:33
Alignment explanation
Indices: 98572807--98572947 Score: 119
Period size: 33 Copynumber: 4.3 Consensus size: 33
98572797 TAGTCCAACT
*
98572807 ATGGTCTTACACGTGTATTGCCATGGCCTAGCC
1 ATGGTCTTACACGTGTATTGCCATAGCCTAGCC
** * **
98572840 ATGGTCTTACAC-TCGTGGTGCCATATCCTAGAT
1 ATGGTCTTACACGT-GTATTGCCATAGCCTAGCC
*
98572873 ATGGTCTTATCATCAG-G-A-TGCCATAGCCTAGCT
1 ATGGTCTTA-CA-C-GTGTATTGCCATAGCCTAGCC
* * * *
98572906 ATGGTCTTACACATATATTGCCATGGCCCAGCC
1 ATGGTCTTACACGTGTATTGCCATAGCCTAGCC
98572939 ATGGTCTTA
1 ATGGTCTTA
98572948 TCTGTCAATT
Statistics
Matches: 86, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
31 1 0.01
32 4 0.05
33 77 0.90
34 2 0.02
35 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACGTGTATTGCCATAGCCTAGCC
Found at i:98575990 original size:29 final size:30
Alignment explanation
Indices: 98575932--98576000 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
98575922 CCACCCTTAA
* *
98575932 AATATTTACACTATTAGTCCTTCAAATTTT
1 AATATTTACACTATTAATCCCTCAAATTTT
* *
98575962 CATATTTACA-TTTTAATCCCTCAAATTTT
1 AATATTTACACTATTAATCCCTCAAATTTT
98575991 AAGTATTTAC
1 AA-TATTTAC
98576001 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 17 0.52
30 16 0.48
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.46
Consensus pattern (30 bp):
AATATTTACACTATTAATCCCTCAAATTTT
Found at i:98576379 original size:37 final size:37
Alignment explanation
Indices: 98576298--98576907 Score: 587
Period size: 37 Copynumber: 16.8 Consensus size: 37
98576288 GGAATATTGG
* *
98576298 TTCTACT-AAAGTGCTC-AACGAGCAATATCTATTGG
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
*
98576333 TTCTACTGAAAGTGCTCAAATGAGCAATATCTACTGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * ** * *
98576370 TTCTTCTGAAAATTTTCAAACAATCAATATCTACT-A
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * *
98576406 ATCATACT-AAATGTGCTCAAACGAGCATTGTCTACT-A
1 TTC-TACTGAAA-GTGCTCAAACGAGCAATATCTACTGA
*
98576443 TTCTACTCG-AAGTTCTCAAACGAGCAATATCTACTGA
1 TTCTACT-GAAAGTGCTCAAACGAGCAATATCTACTGA
* *
98576480 TTTTACTGAAAGTGCTCAAATGAGCAATATCTACTGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* *
98576517 TACTACTGAAAGTGCTC-AACGAGCAATATCTAGTGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * * * * * *
98576553 TCCTACTGAATGTACTCAAATGAGTAATGTCTACTAA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* *
98576590 TTCTACTGAAAGTGCTAAAACGAGCAATATCTACTAA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
*
98576627 TTCTACTGAAAGTGCT-TAACGAGCAATATCTA--G-
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * *
98576660 ------TGAATGTGCTCAAACGAGCAATGTCTACTAA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
98576691 TTCTA-TAGAAA-TGCTCAAACGAGCAATATCTACTGA
1 TTCTACT-GAAAGTGCTCAAACGAGCAATATCTACTGA
* * *
98576727 TTCTACTGAAAGTGTTC-AACGAACAATATCTACCGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * * * *
98576763 TCCTACTTAATGTGCTCAAACAAGCAATGTCTACTGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
*
98576800 TTCTACTG-CAGTGCTCAAACGAGCAATATCTACTGA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
* * * *
98576836 TTCTATTGAATAGTTGCTCAAATGAGCAATATCCATTGA
1 TTCTACTGAA-AG-TGCTCAAACGAGCAATATCTACTGA
* * *
98576875 TTATACTGAATGCTTGCTCAAACGAGCATTATC
1 TTCTACTGAAAG--TGCTCAAACGAGCAATATC
98576908 CACTAATTTT
Statistics
Matches: 468, Mismatches: 81, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
27 9 0.02
28 14 0.03
35 7 0.01
36 181 0.39
37 206 0.44
38 3 0.01
39 48 0.10
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (37 bp):
TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA
Found at i:98576447 original size:110 final size:110
Alignment explanation
Indices: 98576301--98576884 Score: 481
Period size: 110 Copynumber: 5.4 Consensus size: 110
98576291 ATATTGGTTC
* * *
98576301 TACT-AAAGTGCTCAACGAGCAATATCTATTGGTTCTACTGAAAGTGCTCAAATGAGCAATATCT
1 TACTGAAAGTGCTCAACGAGCAATATCTACTGATTCTACTGAAAGTACTCAAATGAGCAATATCT
* ** * *
98576365 ACTGATTCTTCTGAAAATTTTCAAACAATCAATATCTACTAATCA
66 ACTGATTCTTCTGAAAGTGCTCAAACGAGCAATATCTACTAATCA
* * * *
98576410 TACT-AAATGTGCTCAAACGAGCATTGTCTACT-ATTCTACTCG-AAGTTCTCAAACGAGCAATA
1 TACTGAAA-GTGCTC-AACGAGCAATATCTACTGATTCTACT-GAAAGTACTCAAATGAGCAATA
* *
98576472 TCTACTGATT-TTACTGAAAGTGCTCAAATGAGCAATATCTACTGAT-A
63 TCTACTGATTCTT-CTGAAAGTGCTCAAACGAGCAATATCTACTAATCA
* * * * *
98576519 CTACTGAAAGTGCTCAACGAGCAATATCTAGTGATCCTACTGAATGTACTCAAATGAGTAATGTC
1 -TACTGAAAGTGCTCAACGAGCAATATCTACTGATTCTACTGAAAGTACTCAAATGAGCAATATC
* * *
98576584 TACTAATTCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTC-
65 TACTGATTCTTCTGAAAGTGCTCAAACGAGCAATATCTACTAA-TCA
* * * * *
98576630 TACTGAAAGTGCTTAACGAGCAATATCTA--G-------TGAATGTGCTCAAACGAGCAATGTCT
1 TACTGAAAGTGCTCAACGAGCAATATCTACTGATTCTACTGAAAGTACTCAAATGAGCAATATCT
* * *
98576686 ACTAATTCTAT-AGAAA-TGCTCAAACGAGCAATATCTACTGATTC-
66 ACTGATTCT-TCTGAAAGTGCTCAAACGAGCAATATCTACT-AATCA
* * * * * * * ** *
98576730 TACTGAAAGTGTTCAACGAACAATATCTACCGATCCTACTTAATGTGCTCAAACAAGCAATGTCT
1 TACTGAAAGTGCTCAACGAGCAATATCTACTGATTCTACTGAAAGTACTCAAATGAGCAATATCT
* * *
98576795 ACTGATTCTACTG-CAGTGCTCAAACGAGCAATATCTACTGATTC-
66 ACTGATTCTTCTGAAAGTGCTCAAACGAGCAATATCTACT-AATCA
* * * * *
98576839 TATTGAATAGTTGCTCAAATGAGCAATATCCATTGATTATACTGAA
1 TACTGAA-AG-TGCTC-AACGAGCAATATCTACTGATTCTACTGAA
98576885 TGCTTGCTCA
Statistics
Matches: 394, Mismatches: 54, Indels: 51
0.79 0.11 0.10
Matches are distributed among these distances:
100 50 0.13
101 37 0.09
102 1 0.00
108 2 0.01
109 92 0.23
110 167 0.42
111 24 0.06
112 21 0.05
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (110 bp):
TACTGAAAGTGCTCAACGAGCAATATCTACTGATTCTACTGAAAGTACTCAAATGAGCAATATCT
ACTGATTCTTCTGAAAGTGCTCAAACGAGCAATATCTACTAATCA
Found at i:98576476 original size:73 final size:72
Alignment explanation
Indices: 98576298--98576907 Score: 509
Period size: 73 Copynumber: 8.4 Consensus size: 72
98576288 GGAATATTGG
* * *
98576298 TTCTACT-AAAGTGCTC-AACGAGCAATATCTATTGGTTCTACTGAAAGTGCTCAAATGAGCAAT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACT-GATCTACT-AAAGTGCTCAAACGAGCAAT
98576361 ATCTACTGA
64 ATCTACTGA
* * ** * * * *
98576370 TTCTTCTGAAAATTTTCAAACAATCAATATCTACTAATCATACTAAATGTGCTCAAACGAGCATT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATC-TACTAAA-GTGCTCAAACGAGCAAT
*
98576435 GTCTACT-A
64 ATCTACTGA
* * *
98576443 TTCTACTCG-AAGTTCTCAAACGAGCAATATCTACTGATTTTACTGAAAGTGCTCAAATGAGCAA
1 TTCTACT-GAAAGTGCTCAAACGAGCAATATCTACTGA-TCTACT-AAAGTGCTCAAACGAGCAA
98576507 TATCTACTGA
63 TATCTACTGA
* * * * * *
98576517 TACTACTGAAAGTGCTC-AACGAGCAATATCTAGTGATCCTACTGAATGTACTCAAATGAGTAAT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGAT-CTACT-AAAGTGCTCAAACGAGCAAT
* *
98576581 GTCTACTAA
64 ATCTACTGA
* * *
98576590 TTCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTCTACTGAAAGTGCT-TAACGAGCAAT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA-TCTACT-AAAGTGCTCAAACGAGCAAT
98576654 ATCTA--G-
64 ATCTACTGA
* * * *
98576660 ------TGAATGTGCTCAAACGAGCAATGTCTACTAATTCTA-TAGAAATGCTCAAACGAGCAAT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA-TCTACTA-AAGTGCTCAAACGAGCAAT
98576718 ATCTACTGA
64 ATCTACTGA
* * * * *
98576727 TTCTACTGAAAGTGTTC-AACGAACAATATCTACCGATCCTACTTAATGTGCTCAAACAAGCAAT
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGAT-CTAC-TAAAGTGCTCAAACGAGCAAT
*
98576791 GTCTACTGA
64 ATCTACTGA
* * *
98576800 TTCTACTG-CAGTGCTCAAACGAGCAATATCTACTGATTCTATTGAATAGTTGCTCAAATGAGCA
1 TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGA-TCTACT-AA-AG-TGCTCAAACGAGCA
* *
98576864 ATATCCATTGA
62 ATATCTACTGA
* * *
98576875 TTATACTGAATGCTTGCTCAAACGAGCATTATC
1 TTCTACTGAAAG--TGCTCAAACGAGCAATATC
98576908 CACTAATTTT
Statistics
Matches: 432, Mismatches: 72, Indels: 62
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.00
63 7 0.02
64 48 0.11
66 1 0.00
71 1 0.00
72 32 0.07
73 204 0.47
74 91 0.21
75 28 0.06
76 1 0.00
78 18 0.04
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (72 bp):
TTCTACTGAAAGTGCTCAAACGAGCAATATCTACTGATCTACTAAAGTGCTCAAACGAGCAATAT
CTACTGA
Found at i:98576668 original size:27 final size:28
Alignment explanation
Indices: 98576628--98576688 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
98576618 ATCTACTAAT
*
98576628 TCTACTGAAAGTGCT-TAACGAGCAATA
1 TCTACTGAAAGTGCTCAAACGAGCAATA
* * *
98576655 TCTAGTGAATGTGCTCAAACGAGCAATG
1 TCTACTGAAAGTGCTCAAACGAGCAATA
98576683 TCTACT
1 TCTACT
98576689 AATTCTATAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (28 bp):
TCTACTGAAAGTGCTCAAACGAGCAATA
Found at i:98576681 original size:64 final size:64
Alignment explanation
Indices: 98576591--98576726 Score: 195
Period size: 64 Copynumber: 2.1 Consensus size: 64
98576581 GTCTACTAAT
*
98576591 TCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTCTACT-GAAAGTGCT-TAACGAGCAAT
1 TCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTCTA-TAGAAA-TGCTCAAACGAGCAAT
98576654 A
64 A
* * * *
98576655 TCTAGTGAATGTGCTCAAACGAGCAATGTCTACTAATTCTATAGAAATGCTCAAACGAGCAATA
1 TCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTCTATAGAAATGCTCAAACGAGCAATA
98576719 TCTACTGA
1 TCTACTGA
98576727 TTCTACTGAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
63 5 0.08
64 59 0.92
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (64 bp):
TCTACTGAAAGTGCTAAAACGAGCAATATCTACTAATTCTATAGAAATGCTCAAACGAGCAATA
Found at i:98577513 original size:11 final size:12
Alignment explanation
Indices: 98577483--98577516 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
98577473 CGGCCCGTTC
98577483 ATATTAATTTTT
1 ATATTAATTTTT
98577495 ATATTAATTTTT
1 ATATTAATTTTT
98577507 ATA-TAATTTT
1 ATATTAATTTT
98577517 AAAAAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:98577757 original size:22 final size:22
Alignment explanation
Indices: 98577732--98577774 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
98577722 TATCCAAACA
98577732 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* *
98577754 ATAATAATAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
98577775 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:98580203 original size:101 final size:101
Alignment explanation
Indices: 98580018--98580218 Score: 271
Period size: 101 Copynumber: 2.0 Consensus size: 101
98580008 ATCAAACTTA
* * * * *
98580018 GCTCATTTCTTAGGCTTCTGAATAGAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
1 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
*
98580083 ATGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
66 ACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
*
98580119 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCT-TCAAAT-CCTTTTTACTCTTACCCCTC
1 GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCT-AAATCCCTCTTT-CTCTTACCCCTC
* * * *
98580182 TCACGGTCTCTGTTTTTGCATTAAGAGTGCTTAACCT
64 TCACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCT
98580219 CCTCAGCAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
100 7 0.08
101 80 0.92
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.35
Consensus pattern (101 bp):
GCTCATTTCTTAAGCCTCTAAACAAAACTAGAGGGCTCTAAATCCCTCTTTCTCTTACCCCTCTC
ACGGTCCCTATTTTCGCATTAAGAGGGCTTAACCTG
Found at i:98583547 original size:25 final size:25
Alignment explanation
Indices: 98583486--98583559 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
98583476 AAAAAATTAA
* *
98583486 ATATATTTATATTAATTT--TAATT
1 ATATATTTTTATTTATTTAATAATT
*
98583509 -TA-ATTTTTA-ATATTTAATAATT
1 ATATATTTTTATTTATTTAATAATT
98583531 ATATATTTTTATTTA-TTAA-AATT
1 ATATATTTTTATTTATTTAATAATT
*
98583554 TTATAT
1 ATATAT
98583560 ATAATCATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 4 0.10
21 6 0.15
22 7 0.17
23 11 0.27
24 11 0.27
25 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
ATATATTTTTATTTATTTAATAATT
Found at i:98585589 original size:28 final size:28
Alignment explanation
Indices: 98585543--98585616 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
98585533 TCTTCGATGT
* * *
98585543 CTCGCATACTATGTACCATACTCAATAC
1 CTCGCACACTAAGTGCCATACTCAATAC
* *
98585571 CTCGCACACTAAGTGCCATCCTCGATAC
1 CTCGCACACTAAGTGCCATACTCAATAC
* *
98585599 TTTGCACACTAAGTGCCA
1 CTCGCACACTAAGTGCCA
98585617 CATATATATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.28, C:0.34, G:0.12, T:0.26
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCATACTCAATAC
Found at i:98585683 original size:40 final size:40
Alignment explanation
Indices: 98585600--98585710 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
98585590 CCTCGATACT
*
98585600 TTGCACACTAAGTGCCACATATATATAGCCAAAGCTATCTCAAA
1 TTGCACACTAAGTGCCAC-T-T-T-TAGCCGAAGCTATCTCAAA
* *
98585644 TTGCACACCAAGTGCCACTTTTAGCCGAAGCTATTTCAAA
1 TTGCACACTAAGTGCCACTTTTAGCCGAAGCTATCTCAAA
** *
98585684 CCGCACACTAAGTGTCA-TTTTAGCCGA
1 TTGCACACTAAGTGCCACTTTTAGCCGA
98585711 TAAGTCGTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.17
40 30 0.50
41 1 0.02
42 1 0.02
43 1 0.02
44 17 0.28
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (40 bp):
TTGCACACTAAGTGCCACTTTTAGCCGAAGCTATCTCAAA
Found at i:98587147 original size:9 final size:8
Alignment explanation
Indices: 98587131--98587178 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
98587121 ATACTTCTAC
98587131 TTTTAAAA
1 TTTTAAAA
98587139 TTATTAAAA
1 TT-TTAAAA
** *
98587148 TTTTCTAC
1 TTTTAAAA
98587156 TTTTAAAA
1 TTTTAAAA
98587164 TTATTAAAA
1 TT-TTAAAA
98587173 TTTTAA
1 TTTTAA
98587179 CTCTAATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 16 0.50
9 16 0.50
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:98587153 original size:25 final size:25
Alignment explanation
Indices: 98587125--98587176 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
98587115 TGAATTATAC
98587125 TTCTACTTTTAAAATTATTAAAATT
1 TTCTACTTTTAAAATTATTAAAATT
98587150 TTCTACTTTTAAAATTATTAAAATT
1 TTCTACTTTTAAAATTATTAAAATT
98587175 TT
1 TT
98587177 AACTCTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (25 bp):
TTCTACTTTTAAAATTATTAAAATT
Found at i:98592125 original size:20 final size:19
Alignment explanation
Indices: 98592100--98592143 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
98592090 ATTGGGCCTT
98592100 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTT-G
*
98592120 GCCCATTTCAATACAGTTG
1 GCCCATTTCAACACAGTTG
98592139 GCCCA
1 GCCCA
98592144 CAACAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (19 bp):
GCCCATTTCAACACAGTTG
Found at i:98594256 original size:12 final size:13
Alignment explanation
Indices: 98594239--98594267 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
98594229 TTCCTATCTA
98594239 ATAATAATAA-TT
1 ATAATAATAATTT
98594251 ATAATAATAATTT
1 ATAATAATAATTT
98594264 ATAA
1 ATAA
98594268 ATATATCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAATAATAATTT
Found at i:98594301 original size:23 final size:25
Alignment explanation
Indices: 98594245--98594302 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
98594235 TCTAATAATA
* *
98594245 ATAATTATAATAATAATTTATAAAT
1 ATAATAATAATAATAATTTACAAAT
*
98594270 ATATCTAATAATAA-AATTT-CAAAT
1 ATA-ATAATAATAATAATTTACAAAT
98594294 ATAATAATA
1 ATAATAATA
98594303 CAGTAAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.18
24 7 0.25
25 8 0.29
26 8 0.29
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATAATAATAATAATTTACAAAT
Found at i:98595509 original size:19 final size:19
Alignment explanation
Indices: 98595463--98595510 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
98595453 TTTTCTTTGT
*
98595463 TCTTTATTCTCTCAATCTC
1 TCTTTATTTTCTCAATCTC
*
98595482 TCTTTATTTTCTCCATCTC
1 TCTTTATTTTCTCAATCTC
98595501 TCTTTATTTT
1 TCTTTATTTT
98595511 ATAACATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.60
Consensus pattern (19 bp):
TCTTTATTTTCTCAATCTC
Found at i:98597940 original size:20 final size:19
Alignment explanation
Indices: 98597907--98597964 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 19
98597897 TGTTTCAGTT
98597907 AATTCTAAAATTATAAAAAA
1 AATT-TAAAATTATAAAAAA
98597927 AATTTAAAATT-TATAAAAA
1 AATTTAAAATTATA-AAAAA
98597946 AATCATTAAAATTATAAAA
1 AAT--TTAAAATTATAAAA
98597965 TTATTAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
18 2 0.06
19 15 0.44
20 4 0.12
21 11 0.32
22 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTAAAATTATAAAAAA
Found at i:98597956 original size:9 final size:9
Alignment explanation
Indices: 98597944--98597991 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
98597934 AATTTATAAA
*
98597944 AAAATCATT
1 AAAATTATT
98597953 AAAATTA-T
1 AAAATTATT
98597961 AAAATTATT
1 AAAATTATT
98597970 AAAA-TATTT
1 AAAATTA-TT
98597979 AAAATTA-T
1 AAAATTATT
98597987 AAAAT
1 AAAAT
98597992 ATCAAAGAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
8 16 0.46
9 17 0.49
10 2 0.06
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAATTATT
Found at i:98597965 original size:8 final size:8
Alignment explanation
Indices: 98597952--98597991 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
98597942 AAAAAATCAT
98597952 TAAAATTA
1 TAAAATTA
98597960 TAAAATTA
1 TAAAATTA
*
98597968 TTAAAATATT
1 -TAAAAT-TA
98597978 TAAAATTA
1 TAAAATTA
98597986 TAAAAT
1 TAAAAT
98597992 ATCAAAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 15 0.54
9 12 0.43
10 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAAATTA
Found at i:98618233 original size:148 final size:148
Alignment explanation
Indices: 98617951--98618413 Score: 517
Period size: 148 Copynumber: 3.1 Consensus size: 148
98617941 CTAATTCTAC
* * *
98617951 TTTCAATTACTATTTGTC--AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC-GGAACA
1 TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAACA
* *
98618013 TGCTGAGGTATTTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 --CTGAGGTATTTTCAATTTTTGTTTATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
98618078 CCTCGGGGCACACTGAGGTAT
128 CCTCGGGGCACACTGAGGTAT
98618099 TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-AC
* * * *
98618164 ACTGAGATATTTTTAATTTTTGTTTTTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCC
65 ACTGAGGTATTTTCAATTTTTGTTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
98618228 TCGGGGCACGCTGAGGTAT
130 TCGGGGCACACTGAGGTAT
* * * *
98618247 TGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTATTGT-TTGTCA---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * *
98618312 CTCAAGTAACATTGAGGTATTTTCAA--TTT-ATCATCAAAAAACTCAACTCATATTGCGAGGGG
56 CTC-AGGAACACTGAGGTATTTTCAATTTTTGTTTATCAAAAAA-TCAACTCATATTGCGAGAGG
* **
98618374 TGAGTTGAGCCTTGGCTCACACGCTGAGGTAT
119 TGAGTTGAGCCTCGGGGCACA--CTGAGGTAT
98618406 TTTCAATT
1 TTTCAATT
98618414 TCTGCTTTTC
Statistics
Matches: 269, Mismatches: 27, Indels: 27
0.83 0.08 0.08
Matches are distributed among these distances:
148 80 0.30
149 4 0.01
150 60 0.22
151 3 0.01
152 4 0.01
155 3 0.01
156 8 0.03
157 35 0.13
158 53 0.20
159 19 0.07
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (148 bp):
TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAACA
CTGAGGTATTTTCAATTTTTGTTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CGGGGCACACTGAGGTAT
Found at i:98618242 original size:73 final size:74
Alignment explanation
Indices: 98617951--98618413 Score: 470
Period size: 75 Copynumber: 6.1 Consensus size: 74
98617941 CTAATTCTAC
* * * * **
98617951 TTTCAATTACTATTTGTC-AAAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTCGGAACATG
1 TTTCAATTATTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
98618015 CTGAGGTAT
66 CTGAGGTAT
*
98618024 TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTATTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
98618089 ACTGAGGTAT
65 ACTGAGGTAT
*
98618099 TTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTATTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
*
98618164 ACTGAGATAT
65 ACTGAGGTAT
* * * * * *
98618174 TTTTAATTTTTGTTTTTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
1 TTTCAATTATTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
98618238 CTGAGGTAT
66 CTGAGGTAT
* * * *
98618247 TGTCAATTTTTGTGTTTTAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAA-TTAT-TG-TTT--GTCA------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
98618312 CTCAAGTA-ACATTGAGGTAT
55 CTC-GGGACACACTGAGGTAT
* ** * * *
98618332 TTTCAA-T-TT-ATCATCAAAAAACTCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCAC
1 TTTCAATTATTGTTTGTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GAC
*
98618394 ACGCTGAGGTAT
63 ACACTGAGGTAT
98618406 TTTCAATT
1 TTTCAATT
98618414 TCTGCTTTTC
Statistics
Matches: 332, Mismatches: 38, Indels: 38
0.81 0.09 0.09
Matches are distributed among these distances:
71 6 0.02
72 31 0.09
73 71 0.21
74 20 0.06
75 140 0.42
76 3 0.01
77 2 0.01
78 2 0.01
79 1 0.00
81 1 0.00
82 1 0.00
83 1 0.00
85 52 0.16
86 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (74 bp):
TTTCAATTATTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
CTGAGGTAT
Found at i:98618306 original size:158 final size:163
Alignment explanation
Indices: 98618118--98618653 Score: 484
Period size: 179 Copynumber: 3.2 Consensus size: 163
98618108 TTGTTTGTCA
* *
98618118 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGATATTTTTAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTT
**
98618183 TTGTTTTTC-AAAAA-TCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGG-GGCACGCTGAGGT
66 TTGTTTTTCAAAAAACTCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGT
* *
98618245 ATTGTCAATTTTTG-TGTTTTAATTTAT-TTTTC
131 ATTGTCAATTTCTGCT-TTTCAATTTATCTTTTC
* *
98618277 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTA-ACATTGAGGTATTTTCAA--
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACACTGAGGTATTTTCAATT
* ** * * *
98618338 TTT-ATCATCAAAAAACTCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCACACGCTGAG
65 TTTGTTTTTCAAAAAACTCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGC-CACACGCTGAG
* *
98618402 GTATTTTCAATTTCTGCTTTTCAATTTCTGCTTTTC
129 GTATTGTCAATTTCTGCTTTTCAATTTAT-CTTTTC
** * * *
98618438 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATT
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATT
** * * *
98618503 AATGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGG
65 TTTG-TTTTTC-A---A--------AAAACTCAACTCATACTGCGAGAGGTGAGTTGAGCCTC-G
* * * ** * **
98618568 GTCACATG-TCGAGGTATTTTCAAAATCTGCTTTTCAAATTA-AGTTTC
116 GCCACACGCT-GAGGTATTGTCAATTTCTGCTTTTCAATTTATCTTTTC
*
98618615 AAAAAAACTAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 AAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT
98618654 TAGCTCATGT
Statistics
Matches: 304, Mismatches: 43, Indels: 42
0.78 0.11 0.11
Matches are distributed among these distances:
155 3 0.01
156 8 0.03
157 32 0.11
158 53 0.17
159 35 0.12
160 1 0.00
161 5 0.02
162 1 0.00
163 52 0.17
165 1 0.00
167 3 0.01
168 1 0.00
171 1 0.00
176 7 0.02
177 32 0.11
178 1 0.00
179 66 0.22
180 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (163 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTATTTTCAATTT
TTGTTTTTCAAAAAACTCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGGCCACACGCTGAGGT
ATTGTCAATTTCTGCTTTTCAATTTATCTTTTC
Found at i:98618424 original size:14 final size:14
Alignment explanation
Indices: 98618405--98618439 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
98618395 CGCTGAGGTA
98618405 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
98618419 TTTTCAATTTCTGC
1 TTTTCAATTTCTGC
98618433 TTTTCAA
1 TTTTCAA
98618440 AAAAATCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTGC
Found at i:98618493 original size:163 final size:157
Alignment explanation
Indices: 98618098--98618502 Score: 469
Period size: 163 Copynumber: 2.5 Consensus size: 157
98618088 CACTGAGGTA
98618098 TTTTCAATTATTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATT-TTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * **
98618163 CACTGAGATATTTTTAATTTTTGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCC
64 CACTGAGGTATTTTCAA--TTTGATCATCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCC
** *
98618228 TCGGGGCACGCTGAGGTATTGTCAATTTTTG
127 TCGGCACACGCTGAGGTATTGTCAATTTCTG
* *
98618259 TGTTTTAATTTAT-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTA-
1 T-TTTCAATTT-TGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGGAC
* * *
98618320 ACATTGAGGTATTTTCAATTT-ATCATCAAAAAACTCAACTCATATTGCGAGGGGTGAGTTGAGC
63 ACACTGAGGTATTTTCAATTTGATCATC-AAAAA-TCAACTCATACTGCGAGAGGTGAGTTGAGC
* *
98618384 CTTGGCTCACACGCTGAGGTATTTTCAATTTCTG
126 CTCGG--CACACGCTGAGGTATTGTCAATTTCTG
** * *
98618418 CTTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGC
1 -TTTTCAATTT-TG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
*
98618483 ACGCTGAGGTATTTTCAATT
63 ACACTGAGGTATTTTCAATT
98618503 AATGTTTTTT
Statistics
Matches: 207, Mismatches: 24, Indels: 24
0.81 0.09 0.09
Matches are distributed among these distances:
155 3 0.01
156 8 0.04
157 32 0.15
158 53 0.26
159 35 0.17
160 3 0.01
161 10 0.05
162 9 0.04
163 54 0.26
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (157 bp):
TTTTCAATTTTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA
CTGAGGTATTTTCAATTTGATCATCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCGG
CACACGCTGAGGTATTGTCAATTTCTG
Found at i:98618639 original size:89 final size:90
Alignment explanation
Indices: 98618331--98618653 Score: 364
Period size: 89 Copynumber: 3.6 Consensus size: 90
98618321 CATTGAGGTA
* * * *
98618331 TTTTCAATTTAT-C-ATC-AAAAAACTCAACTCATATTGCGAGGGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTATGCTTTCAAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
**
98618393 CACGCTGAGGTATTTTCAATTTCTGC
66 CA-GCTGAGGTATTTTCAAAATCTGC
* ** *
98618419 TTTTCAATTTCTGCTTTTCAAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGGC
1 TTTTCAATTTATGC-TTTCAAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* *
98618483 AC-GCTGAGGTATTTTCAATTAATGT-T
65 ACAGCTGAGGTATTTTCAA--AATCTGC
*
98618509 TTTTCAATTTATGCTTTTC--AAAAA-TCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTCAATTTATGC-TTTCAAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
98618571 ACATG-TCGAGGTATTTTCAAAATCTGC
65 ACA-GCT-GAGGTATTTTCAAAATCTGC
* *
98618598 TTTTCAAATTAAG-TTTCAAAAAAACT-AACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAATTTATGCTTTCAAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
98618654 TAGCTCATGT
Statistics
Matches: 200, Mismatches: 22, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
87 4 0.02
88 56 0.28
89 63 0.31
90 33 0.17
91 38 0.19
92 6 0.03
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (90 bp):
TTTTCAATTTATGCTTTCAAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
CAGCTGAGGTATTTTCAAAATCTGC
Found at i:98618926 original size:52 final size:52
Alignment explanation
Indices: 98618820--98619030 Score: 174
Period size: 52 Copynumber: 3.9 Consensus size: 52
98618810 GAAGCTAATT
* * *
98618820 GAAG-TTTAATAGAGAAGATCGAGACTACAAATCTCTTCTCCTTAAACCCTC
1 GAAGTTTTAGTAGAGAAGATCGAGACTACAAATCTCTTCTCCTGAATCCCTC
* * *
98618871 GAAGTTTTAGTAGAGAAAATCGAAACTACAAATCTCTTCTCCCTGAATCTC-C
1 GAAGTTTTAGTAGAGAAGATCGAGACTACAAATCTCTTCT-CCTGAATCCCTC
* * * * * *
98618923 GAAGTTTCAGTATAGTAGGTCGAGGCTACAAATCCCTTCTACCTGAATTCTTATTTCCTC
1 GAAGTTTTAGTAGAGAAGATCGAGACTACAAATCTCTTCT-CCTGAA-TC------CCTC
* * * *
98618983 AAAGTTTTAGTAGAGAATATCGAGGCTACAAGTCTCTTCTCCTTGAAT
1 GAAGTTTTAGTAGAGAAGATCGAGACTACAAATCTCTTCTCC-TGAAT
98619031 TTCTGAAGTT
Statistics
Matches: 125, Mismatches: 24, Indels: 14
0.77 0.15 0.09
Matches are distributed among these distances:
51 4 0.03
52 71 0.57
53 9 0.07
59 4 0.03
60 37 0.30
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (52 bp):
GAAGTTTTAGTAGAGAAGATCGAGACTACAAATCTCTTCTCCTGAATCCCTC
Found at i:98631159 original size:97 final size:97
Alignment explanation
Indices: 98630981--98631172 Score: 262
Period size: 97 Copynumber: 2.0 Consensus size: 97
98630971 CCGAGAATTA
* *
98630981 CAATCTTAAATCAATGACCTGTAAAAAAAATCAGCTATGAACATAGGTTAGCGAGCTGTTAGAAA
1 CAATCTTAAATCAACGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAAA
* *
98631046 ACCGAAGGTCATAATCTTAAATCAGTGGACAG
66 ACCGAAGGCCACAATCTTAAATCAGTGGACAG
* * *
98631078 CAATCTTAAATCAACCGATC-GTAAAATATATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAA
1 CAATCTTAAATCAA-CGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAA
** *
98631142 AGTCG-AGAGCCGCAATCTTAAATCAGTGGAC
65 AACCGAAG-GCCACAATCTTAAATCAGTGGAC
98631173 CATAAAAAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
96 2 0.02
97 78 0.94
98 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.23
Consensus pattern (97 bp):
CAATCTTAAATCAACGACCTGTAAAAAAAATCAGCTATGAACATAGGTCAGCGAGCTGTTAGAAA
ACCGAAGGCCACAATCTTAAATCAGTGGACAG
Found at i:98631203 original size:76 final size:74
Alignment explanation
Indices: 98631115--98631276 Score: 189
Period size: 74 Copynumber: 2.2 Consensus size: 74
98631105 ATATCAGCTA
* * * ***
98631115 TGAACATAGGTCAGCGAGCTGTTAGAAAGTCGAGAGCCGCAATCTTAAATCAGTGGACCATAAAA
1 TGAACATAGGTCAACGAGCTATTAGAAAAT--AGAGCCGCAATCTTAAATCAGCAAACCATAAAA
* *
98631180 AATTTCAGTTG
64 AATATCAATTG
* * ** *
98631191 TGAACGTAGGTCAACGAGCTATTAGAAAATTGAGTTGCAATCTTAAATCAGCAAACCGTAAAAAA
1 TGAACATAGGTCAACGAGCTATTAGAAAATAGAGCCGCAATCTTAAATCAGCAAACCATAAAAAA
98631256 TATCAATTG
66 TATCAATTG
98631265 TGAACATAGGTC
1 TGAACATAGGTC
98631277 TGTAAACTGT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
74 46 0.64
76 26 0.36
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (74 bp):
TGAACATAGGTCAACGAGCTATTAGAAAATAGAGCCGCAATCTTAAATCAGCAAACCATAAAAAA
TATCAATTG
Found at i:98631290 original size:74 final size:76
Alignment explanation
Indices: 98631077--98631336 Score: 195
Period size: 76 Copynumber: 3.4 Consensus size: 76
98631067 TCAGTGGACA
* * * * ** * * * * *
98631077 GCAATCTTAAATCAACCGATCGTAAAATATATCAGCTATGAACATAGGTCAGCGAGCTGTTAG-A
1 GCAATCTTAAATCAGCGGACCGTAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
* *
98631141 AAGTCGA-GAGCC
66 AACT-GAGGA-TC
* * * * * * *
98631153 GCAATCTTAAATCAGTGGACCATAAAAAATTTCAGTTGTGAACGTAGGTCAACGAGCTATTAGAA
1 GCAATCTTAAATCAGCGGACCGTAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
* *
98631218 AATTGA-G-TT
66 AACTGAGGATC
** *** *
98631227 GCAATCTTAAATCAGCAAACCGTAAAAAATATCAATTGTGAACATAGGTCTGTAAACTGTTAGAA
1 GCAATCTTAAATCAGCGGACCGTAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
98631292 AACTGAGGATC
66 AACTGAGGATC
** *
98631303 GTGATCTTAAATCAGCGGACCGTAAAAATTATCA
1 GCAATCTTAAATCAGCGGACCGTAAAAAATATCA
98631337 GCTATGATCA
Statistics
Matches: 146, Mismatches: 35, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
74 57 0.39
75 1 0.01
76 84 0.58
77 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (76 bp):
GCAATCTTAAATCAGCGGACCGTAAAAAATATCAATTGTGAACATAGGTCAACAAACTATTAGAA
AACTGAGGATC
Found at i:98644608 original size:13 final size:13
Alignment explanation
Indices: 98644578--98644612 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
98644568 ATTAATACAT
98644578 AAATATAA-ATAG
1 AAATATAATATAG
*
98644590 AGATATAATATAG
1 AAATATAATATAG
98644603 AAATATAATA
1 AAATATAATA
98644613 ATGATAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (13 bp):
AAATATAATATAG
Found at i:98644619 original size:17 final size:16
Alignment explanation
Indices: 98644594--98644627 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
98644584 AAATAGAGAT
98644594 ATAATATAGAAATATA
1 ATAATATAGAAATATA
98644610 ATAATGATAGAAATATA
1 ATAAT-ATAGAAATATA
98644627 A
1 A
98644628 ATAGGTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (16 bp):
ATAATATAGAAATATA
Found at i:98644732 original size:16 final size:16
Alignment explanation
Indices: 98644687--98644744 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
98644677 TAGAAATATA
98644687 ATAATAATAGTAATAAT
1 ATAATAATA-TAATAAT
*
98644704 ATATTAAGT-TAATAAT
1 ATAATAA-TATAATAAT
* *
98644720 ATAATGATATAATGAT
1 ATAATAATATAATAAT
98644736 ATAATAATA
1 ATAATAATA
98644745 ATAACAAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 26 0.76
17 6 0.18
18 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (16 bp):
ATAATAATATAATAAT
Found at i:98647970 original size:29 final size:29
Alignment explanation
Indices: 98647928--98647984 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
98647918 TTTTATCCAT
* *
98647928 TTAATGATAAAAAATTATAAAATAATCAC
1 TTAATCATAAAAAATTACAAAATAATCAC
*
98647957 TTAATCATAAAAAATTACAAAATGATCA
1 TTAATCATAAAAAATTACAAAATAATCA
98647985 TCCAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.58, C:0.09, G:0.04, T:0.30
Consensus pattern (29 bp):
TTAATCATAAAAAATTACAAAATAATCAC
Found at i:98648247 original size:14 final size:15
Alignment explanation
Indices: 98648225--98648257 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
98648215 ACTTTAGTTG
*
98648225 AAATGATAAAT-TTT
1 AAATAATAAATATTT
98648239 AAATAATAAATATTT
1 AAATAATAAATATTT
98648254 AAAT
1 AAAT
98648258 GTCTTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATAATAAATATTT
Found at i:98648550 original size:20 final size:20
Alignment explanation
Indices: 98648513--98648550 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
98648503 AAGTGTAAGC
*
98648513 AACAAATGAATAAAAAAAAA
1 AACAAATGAAGAAAAAAAAA
*
98648533 AACAAA-GAAGAAATAAAA
1 AACAAATGAAGAAAAAAAA
98648551 TATGTATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.08
Consensus pattern (20 bp):
AACAAATGAAGAAAAAAAAA
Found at i:98654704 original size:31 final size:32
Alignment explanation
Indices: 98654663--98654729 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 32
98654653 CACGTCTGTA
98654663 TGGCCCACATGGCCTACA-TGG-CCAGCCCGTG
1 TGGCCCACATGGCCTA-ATTGGCCCAGCCCGTG
* *
98654694 TGGCCTACATGGCCTAATTGGCCCAGGCCGTG
1 TGGCCCACATGGCCTAATTGGCCCAGCCCGTG
98654726 TGGC
1 TGGC
98654730 TTAAGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 1 0.03
31 18 0.56
32 13 0.41
ACGTcount: A:0.15, C:0.34, G:0.31, T:0.19
Consensus pattern (32 bp):
TGGCCCACATGGCCTAATTGGCCCAGCCCGTG
Found at i:98657063 original size:21 final size:21
Alignment explanation
Indices: 98657039--98657103 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
98657029 AAATCTAACT
98657039 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*** *
98657060 GAAGC-CCGGAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
98657078 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
98657099 GAAGC
1 GAAGC
98657104 CCGAAGGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 13 0.39
ACGTcount: A:0.38, C:0.22, G:0.28, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:98657076 original size:39 final size:39
Alignment explanation
Indices: 98657021--98657121 Score: 175
Period size: 39 Copynumber: 2.6 Consensus size: 39
98657011 ATTGTCATCT
**
98657021 GAAGCCCGAAATCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
98657060 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
98657099 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
98657122 TCATCAGAGC
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.38, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:98661358 original size:29 final size:30
Alignment explanation
Indices: 98661301--98661368 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
98661291 CACCCTTAAA
* * * *
98661301 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
98661331 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
98661360 AGTATTTAC
1 A-TATTTAC
98661369 TCTTGTGCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:98669126 original size:43 final size:43
Alignment explanation
Indices: 98669055--98669146 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
98669045 GCTTATTGAA
* * * * * *
98669055 AAAAACGCCGCTAAAAGTCACGGTTTTTAGCGACGTTTGTGGT
1 AAAAGCGCAGCTAAAAGTCACGGCTTTTAACGACATTTGTGGG
*
98669098 AAAAGCGCAGCTAAAAGTCACGGCTTTTAACGGCATTTGTGGG
1 AAAAGCGCAGCTAAAAGTCACGGCTTTTAACGACATTTGTGGG
98669141 AAAAGC
1 AAAAGC
98669147 CTTGACTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAAGCGCAGCTAAAAGTCACGGCTTTTAACGACATTTGTGGG
Found at i:98675185 original size:9 final size:9
Alignment explanation
Indices: 98675171--98675298 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
98675161 ATGTATTAGT
98675171 TAAGTTATG
1 TAAGTTATG
98675180 TAAGTTGTTATG
1 TAA---GTTATG
*
98675192 TACGTTATG
1 TAAGTTATG
*
98675201 TGAGTTATG
1 TAAGTTATG
*
98675210 TAAATTATG
1 TAAGTTATG
98675219 TAAGTTATG
1 TAAGTTATG
*
98675228 TGAGTTATG
1 TAAGTTATG
98675237 TAAGTTGTTATG
1 TAA---GTTATG
*
98675249 TAAATTATG
1 TAAGTTATG
*
98675258 TAAGTTATA
1 TAAGTTATG
*
98675267 TGAGTTATG
1 TAAGTTATG
98675276 TAAGTTATG
1 TAAGTTATG
* *
98675285 TAATTTATT
1 TAAGTTATG
98675294 TAAGT
1 TAAGT
98675299 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:98675298 original size:57 final size:57
Alignment explanation
Indices: 98675171--98675298 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
98675161 ATGTATTAGT
** * *
98675171 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
98675228 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
98675285 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
98675299 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:98675839 original size:241 final size:241
Alignment explanation
Indices: 98675418--98676364 Score: 1774
Period size: 241 Copynumber: 3.9 Consensus size: 241
98675408 TGAATATAGT
98675418 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
* *
98675483 TCGATATAAGTG---CCCATCAGGTTTCTAGCCTATATACTTTGAATCTTTAAAATATTTAAAAA
66 TCGATATAAG-GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAA
98675545 AAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAA
130 AAGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAA
98675610 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
195 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
98675657 AATTTTTTAAGATTCATCATACATGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
98675722 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
98675787 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
98675852 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
* *
98675898 AATTTTTTAAGATTTATCATACGTGGCATTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
98675963 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
98676028 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
98676093 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
* *
98676139 AATTTTTTAAGATTCATCTTACGCGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
98676204 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* * *
98676269 AGGTTGGAGAAAAGGTCAGCTATTATTGTAATTTTAATGGACAAACAAGCTACGTGGTAATAAAT
131 AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
98676334 ATTCAATAGTAAATGAGCTCGATAGAACTTT
196 ATTCAATAGTAAATGAGCTCGATAGAACTTT
98676365 AACTATTTTA
Statistics
Matches: 692, Mismatches: 13, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
238 1 0.00
239 74 0.11
241 617 0.89
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACGTGGTAATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:98679489 original size:18 final size:18
Alignment explanation
Indices: 98679466--98679501 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
98679456 TTAACCGAAA
98679466 ACAAACAAGCACACACTT
1 ACAAACAAGCACACACTT
98679484 ACAAACAAGCACACACTT
1 ACAAACAAGCACACACTT
98679502 GTTGCGTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.33, G:0.06, T:0.11
Consensus pattern (18 bp):
ACAAACAAGCACACACTT
Found at i:98680064 original size:13 final size:14
Alignment explanation
Indices: 98680041--98680077 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
98680031 TATTATCACT
98680041 TAAATAATTTAATC
1 TAAATAATTTAATC
98680055 TAAA-AATTTAATC
1 TAAATAATTTAATC
*
98680068 TAAATTATTT
1 TAAATAATTT
98680078 CATTTTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:98683578 original size:3 final size:3
Alignment explanation
Indices: 98683572--98683671 Score: 71
Period size: 3 Copynumber: 33.3 Consensus size: 3
98683562 TTTAGCCACT
* *
98683572 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTTA CTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * *
98683617 TTA TCT- TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
98683662 CTA TCA TTA T
1 TTA TTA TTA T
98683672 ATTTATACCT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
2 5 0.07
3 65 0.86
4 6 0.08
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:98683604 original size:12 final size:12
Alignment explanation
Indices: 98683589--98683671 Score: 85
Period size: 12 Copynumber: 6.6 Consensus size: 12
98683579 TTTGTTTATT
*
98683589 TTATTATTATTA
1 TTATTATTACTA
98683601 TTATTATTTACTA
1 TTATTA-TTACTA
98683614 TTATTATCTTTACTA
1 TTATTA---TTACTA
* *
98683629 TTATTGTTAGTA
1 TTATTATTACTA
*
98683641 TTATTACTACTA
1 TTATTATTACTA
98683653 TTATTATTACTA
1 TTATTATTACTA
*
98683665 TCATTAT
1 TTATTAT
98683672 ATTTATACCT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
12 37 0.62
13 11 0.18
15 12 0.20
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:98683983 original size:10 final size:10
Alignment explanation
Indices: 98683970--98684003 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
98683960 TAAATATCAC
98683970 TATTTATTTT
1 TATTTATTTT
98683980 TATTTATTTT
1 TATTTATTTT
98683990 T-TTTATTTGT
1 TATTTATTT-T
98684000 TATT
1 TATT
98684004 ATTATTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.32
10 13 0.59
11 2 0.09
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (10 bp):
TATTTATTTT
Found at i:98683994 original size:13 final size:14
Alignment explanation
Indices: 98683970--98684010 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
98683960 TAAATATCAC
98683970 TATTTATTTTTATT
1 TATTTATTTTTATT
98683984 TATTT-TTTTTATT
1 TATTTATTTTTATT
* *
98683997 T-GTTATTATTATT
1 TATTTATTTTTATT
98684010 T
1 T
98684011 TCAAATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 2 0.08
13 17 0.71
14 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (14 bp):
TATTTATTTTTATT
Found at i:98684005 original size:19 final size:20
Alignment explanation
Indices: 98683972--98684011 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
98683962 AATATCACTA
98683972 TTTATTTTTATTTATT-TTT
1 TTTATTTTTATTTATTATTT
98683991 TTTATTTGTTA-TTATTATTT
1 TTTATTT-TTATTTATTATTT
98684011 T
1 T
98684012 CAAATTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTATTTTTATTTATTATTT
Found at i:98696306 original size:46 final size:44
Alignment explanation
Indices: 98696239--98696567 Score: 211
Period size: 44 Copynumber: 7.6 Consensus size: 44
98696229 ATTATACAGG
*
98696239 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* *
98696285 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-T-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAG--A
* * * * * *
98696329 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * *
98696368 TCTTATCTCCCTGA-AGTTACAGTAGAGA-AGATC--ACA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGATTCAGA
* * *
98696409 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* * ** ****
98696455 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
98696499 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
*
98696542 TCCTATCTCCCTGA-AGTTACAGTGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGA
98696568 GTGGATTAAA
Statistics
Matches: 224, Mismatches: 42, Indels: 37
0.74 0.14 0.12
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 24 0.11
40 1 0.00
41 29 0.13
42 5 0.02
43 25 0.11
44 69 0.31
45 1 0.00
46 68 0.30
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
Found at i:98696356 original size:44 final size:46
Alignment explanation
Indices: 98696242--98696568 Score: 180
Period size: 46 Copynumber: 7.5 Consensus size: 46
98696232 ATACAGGTCT
* * * *
98696242 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
*
98696288 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-ATAGT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAAT-GTCAGATCC
* * * * *
98696332 TATCTCCTTGAGATTACAATGGAGCGGAT--TA-AA-G---GATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * * * *
98696371 TATCTCCCTGA-AGTTACAGTAGAGAAGATC--A-CA--TCAGGTCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATGTCAGATCC
** * * * *
98696412 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* ** * *
98696458 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G--AGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATGTCAGATCC
* * *
98696502 TATCTCCCTGAGATTACAGCGGAGCAGATC---GAA-GACACTATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCA-GATCC
98696545 TATCTCCCTGA-AGTTACAGTGGAG
1 TATCTCCCTGAGA-TTACAGTGGAG
98696569 TGGATTAAAA
Statistics
Matches: 221, Mismatches: 41, Indels: 41
0.73 0.14 0.14
Matches are distributed among these distances:
38 1 0.00
39 27 0.12
40 3 0.01
41 29 0.13
42 5 0.02
43 25 0.11
44 61 0.28
45 3 0.01
46 66 0.30
47 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
Found at i:98698151 original size:3 final size:3
Alignment explanation
Indices: 98698140--98698230 Score: 78
Period size: 3 Copynumber: 30.3 Consensus size: 3
98698130 ATTATTTTGT
*
98698140 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTTA CTA TTA TTA TCT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA T-TA TTA
* * * * * * *
98698185 CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA CTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
98698231 ATTTATACCT
Statistics
Matches: 70, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
2 3 0.04
3 63 0.90
4 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:98698160 original size:12 final size:12
Alignment explanation
Indices: 98698146--98698230 Score: 89
Period size: 12 Copynumber: 6.8 Consensus size: 12
98698136 TTGTTTATTT
*
98698146 TATTATTATTAT
1 TATTATTATTAC
98698158 TATTATTATTTAC
1 TATTATTA-TTAC
98698171 TATTATTATCTTTAC
1 TATTATTA---TTAC
* *
98698186 TATTATTGTTAG
1 TATTATTATTAC
*
98698198 TATTATTACTAC
1 TATTATTATTAC
98698210 TATTATTATTAC
1 TATTATTATTAC
*
98698222 TATCATTAT
1 TATTATTAT
98698231 ATTTATACCT
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
12 39 0.63
13 11 0.18
15 12 0.19
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:98702481 original size:17 final size:18
Alignment explanation
Indices: 98702442--98702486 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
98702432 TGTTTAGCAT
*
98702442 TATTTTTGAGACAAAAAAA
1 TATTTTTAAGAC-AAAAAA
*
98702461 TATTTTTAAGAC-AAAAG
1 TATTTTTAAGACAAAAAA
98702478 TATTTTTAA
1 TATTTTTAA
98702487 ATAAATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.54
19 11 0.46
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (18 bp):
TATTTTTAAGACAAAAAA
Found at i:98702923 original size:72 final size:72
Alignment explanation
Indices: 98702806--98702968 Score: 274
Period size: 72 Copynumber: 2.3 Consensus size: 72
98702796 TTAACTTTAC
*
98702806 ACTTCTCCCTCTTTTTCATTCTCATGTCTGAAACATCTTCTTTTTTTCATTCTTCTTCCCATTTC
1 ACTTCTCCCTCTTTTTCATTCTCACGTCTGAAACATCTTCTTTTTTTCATTCTTCTTCCCATTTC
98702871 CTTCCAA
66 CTTCCAA
**
98702878 ACTTCTCTATCTTTTTCATTCTCACGTCT-AAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTT
1 ACTTCTCCCTCTTTTTCATTCTCACGTCTGAAA-CATCTTCTTTTTTTCATTCTTCTTCCCATTT
98702942 CCTTCCAA
65 CCTTCCAA
*
98702950 CCTTCTCCCTCTTTTTCAT
1 ACTTCTCCCTCTTTTTCAT
98702969 GCTTCTATAC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 3 0.04
72 81 0.96
ACGTcount: A:0.15, C:0.33, G:0.02, T:0.50
Consensus pattern (72 bp):
ACTTCTCCCTCTTTTTCATTCTCACGTCTGAAACATCTTCTTTTTTTCATTCTTCTTCCCATTTC
CTTCCAA
Found at i:98706016 original size:33 final size:33
Alignment explanation
Indices: 98705977--98706039 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
98705967 TTTGTTTTCG
*
98705977 TCATGGATGTTTGAACTTGATTAAATTGGTCCA
1 TCATGGATGTTTGAACTTGATCAAATTGGTCCA
* *
98706010 TCATGGATGTTTGGATTTGATCAAATTGGT
1 TCATGGATGTTTGAACTTGATCAAATTGGT
98706040 TGGTTTAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.25, C:0.10, G:0.24, T:0.41
Consensus pattern (33 bp):
TCATGGATGTTTGAACTTGATCAAATTGGTCCA
Found at i:98706119 original size:43 final size:43
Alignment explanation
Indices: 98706058--98706142 Score: 143
Period size: 43 Copynumber: 2.0 Consensus size: 43
98706048 TCAGGAATTG
*
98706058 GTTGGGTATCAAGTTGGAAAAGACATCAAATTGGTTGCCTTAA
1 GTTGGATATCAAGTTGGAAAAGACATCAAATTGGTTGCCTTAA
* *
98706101 GTTGGATATTAAGTTGGAAAAGGCATCAAATTGGTTGCCTTA
1 GTTGGATATCAAGTTGGAAAAGACATCAAATTGGTTGCCTTA
98706143 TGTATTTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (43 bp):
GTTGGATATCAAGTTGGAAAAGACATCAAATTGGTTGCCTTAA
Found at i:98715397 original size:93 final size:93
Alignment explanation
Indices: 98715238--98715408 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
98715228 GGATGGTTGA
* * *
98715238 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
*
98715303 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
98715331 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
98715396 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
98715409 ACTTAGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:98715411 original size:46 final size:46
Alignment explanation
Indices: 98715242--98715413 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
98715232 GGTTGAGCAT
* * *
98715242 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
98715288 CCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
98715333 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
98715381 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
98715414 GGGCGGTTAC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 2 0.02
46 58 0.57
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:98739669 original size:12 final size:12
Alignment explanation
Indices: 98739652--98739676 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98739642 CATCTCTAAG
98739652 TATAAAATTTAT
1 TATAAAATTTAT
98739664 TATAAAATTTAT
1 TATAAAATTTAT
98739676 T
1 T
98739677 TCATCTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TATAAAATTTAT
Found at i:98740887 original size:30 final size:30
Alignment explanation
Indices: 98740853--98740911 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
98740843 ACCTTCTGTT
* * *
98740853 TCAAAATTATATTTTGACCCCTAAATTTTC
1 TCAAAATTACACTTTGACCCCAAAATTTTC
*
98740883 TCAAAATTACACTTTGGCCCCAAAATTTT
1 TCAAAATTACACTTTGACCCCAAAATTTT
98740912 TGCTGCAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (30 bp):
TCAAAATTACACTTTGACCCCAAAATTTTC
Found at i:98741250 original size:4 final size:4
Alignment explanation
Indices: 98741241--98741284 Score: 65
Period size: 4 Copynumber: 11.5 Consensus size: 4
98741231 GAGAAGAGAA
*
98741241 AAAG AAAG AAAG AAAA AAAG -AAG AAAG AAAG AAAG -AAG AAAG AA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA
98741285 GAAGAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
3 6 0.17
4 30 0.83
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:98741257 original size:15 final size:15
Alignment explanation
Indices: 98741234--98741284 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
98741224 AACGAAGGAG
98741234 AAGAGAAAAAGAAAGA
1 AAGA-AAAAAGAAAGA
98741250 AAGAAAAAA-AGAAGA
1 AAGAAAAAAGA-AAGA
98741265 AAGAAAGAAAG-AAGA
1 AAGAAA-AAAGAAAGA
98741280 AAGAA
1 AAGAA
98741285 GAAGAAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.03
15 24 0.75
16 7 0.22
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAGAAAGA
Found at i:98741264 original size:11 final size:12
Alignment explanation
Indices: 98741240--98741293 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
98741230 GGAGAAGAGA
98741240 AAAAGAAAGAAAG
1 AAAA-AAAGAAAG
98741253 AAAAAAAG-AAG
1 AAAAAAAGAAAG
*
98741264 AAAGAAAGAAAG
1 AAAAAAAGAAAG
98741276 AAGAAAGAAG-AAG
1 AA-AAA-AAGAAAG
98741289 AAAAA
1 AAAAA
98741294 TGAACAGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
11 10 0.28
12 12 0.33
13 11 0.31
14 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:98741606 original size:16 final size:16
Alignment explanation
Indices: 98741563--98741617 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 16
98741553 TTAATACTCG
* *
98741563 TATTTTTATATTATTA
1 TATTTTTGTATTTTTA
*
98741579 GTACTTTATGTATTTTTA
1 -TA-TTTTTGTATTTTTA
98741597 TATTTTTGTA--TTTA
1 TATTTTTGTATTTTTA
98741611 TATTTTT
1 TATTTTT
98741618 AATTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 11 0.33
16 7 0.21
17 4 0.12
18 11 0.33
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (16 bp):
TATTTTTGTATTTTTA
Found at i:98741799 original size:19 final size:19
Alignment explanation
Indices: 98741777--98741816 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
98741767 AAAAATATTC
98741777 AAAAAATTCGTGT-TTTCA
1 AAAAAATTCGTGTGTTTCA
*
98741795 AAAAAATTCTTGTGTTTCA
1 AAAAAATTCGTGTGTTTCA
98741814 AAA
1 AAA
98741817 TTTTTATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (19 bp):
AAAAAATTCGTGTGTTTCA
Found at i:98741816 original size:16 final size:17
Alignment explanation
Indices: 98741797--98741835 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
98741787 TGTTTTCAAA
*
98741797 AAAATTCTTGTGT-TTC
1 AAAATTCTTATGTCTTC
*
98741813 AAAATTTTTATGTCTTC
1 AAAATTCTTATGTCTTC
98741830 AAAATT
1 AAAATT
98741836 TTTTTTCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (17 bp):
AAAATTCTTATGTCTTC
Found at i:98741830 original size:17 final size:16
Alignment explanation
Indices: 98741797--98741838 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
98741787 TGTTTTCAAA
* *
98741797 AAAATTCTTGTGTTTC
1 AAAATTTTTATGTTTC
98741813 AAAATTTTTATGTCTTC
1 AAAATTTTTATGT-TTC
98741830 AAAATTTTT
1 AAAATTTTT
98741839 TTTCTCGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (16 bp):
AAAATTTTTATGTTTC
Found at i:98742110 original size:18 final size:17
Alignment explanation
Indices: 98742016--98742317 Score: 236
Period size: 18 Copynumber: 17.2 Consensus size: 17
98742006 CTCAACATGT
*
98742016 TTTCAAAAA-TTCCGGTG
1 TTTCAAAAATTTTC-GTG
*
98742033 TTTCAAAAATTTACGTG
1 TTTCAAAAATTTTCGTG
* *
98742050 TTTC--AAATTCTAGTG
1 TTTCAAAAATTTTCGTG
*
98742065 ATTCAAAAAGTTTTCGTG
1 TTTCAAAAA-TTTTCGTG
*
98742083 TTTTCTAAAAATTTTTGTG
1 -TTTC-AAAAATTTTCGTG
*
98742102 TTTCAAAAATTTTCGCG
1 TTTCAAAAATTTTCGTG
* * *
98742119 TTTTCAAATATTTTCATAT
1 -TTTCAAAAATTTTCGT-G
98742138 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
98742155 TTTTCAACAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
98742173 TTTCAAAAA-TTTCAGTG
1 TTTCAAAAATTTTC-GTG
* *
98742190 TTTTAAAAAATTTTGCACT-
1 -TTTCAAAAATTTT-C-GTG
** *
98742209 TTAAAAAAAATTTCTTGTG
1 TT-TCAAAAATTT-TCGTG
*
98742228 TTTCAAAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
*
98742245 TTTCAAAAATCTTCGTG
1 TTTCAAAAATTTTCGTG
*
98742262 TTTCCAAAAATTTTCGGG
1 TTT-CAAAAATTTTCGTG
*
98742280 TTTTCAAAAATTCTCGTG
1 -TTTCAAAAATTTTCGTG
*
98742298 ATTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
98742315 TTT
1 TTT
98742318 TTTTAAAAAA
Statistics
Matches: 227, Mismatches: 40, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
15 11 0.05
16 3 0.01
17 80 0.35
18 97 0.43
19 27 0.12
20 9 0.04
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:98742122 original size:36 final size:35
Alignment explanation
Indices: 98742013--98742317 Score: 264
Period size: 36 Copynumber: 8.7 Consensus size: 35
98742003 AAACTCAACA
* *
98742013 TGTTTTCAAAAA-TTCCGGTGTTTCAAAAATTTACG
1 TGTTTTCAAAAATTTTC-GTGTTTCAAAAATTTTCG
* * *
98742048 TG-TTTC--AAATTCTAGTGATTCAAAAAGTTTTCG
1 TGTTTTCAAAAATTTTCGTGTTTCAAAAA-TTTTCG
*
98742081 TGTTTTCTAAAAATTTTTGTGTTTCAAAAATTTTCG
1 TGTTTTC-AAAAATTTTCGTGTTTCAAAAATTTTCG
* * * *
98742117 CGTTTTCAAATATTTTCATATTTTCAAAAATTTTCG
1 TGTTTTCAAAAATTTTCGT-GTTTCAAAAATTTTCG
* *
98742153 TGTTTTCAACAATTCTCGTGTTTCAAAAA-TTTCAG
1 TGTTTTCAAAAATTTTCGTGTTTCAAAAATTTTC-G
* * ** * *
98742188 TGTTTTAAAAAATTTTGCACT-TTAAAAAAAATTTCT
1 TGTTTTCAAAAATTTT-C-GTGTTTCAAAAATTTTCG
* *
98742224 TGTGTTTCAAAAATTGTCGTGTTTCAAAAATCTTCG
1 TGT-TTTCAAAAATTTTCGTGTTTCAAAAATTTTCG
* * *
98742260 TGTTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCG
1 TGTTTTCAAAAATTTTCGTG-TTTCAAAAATTTTCG
*
98742296 TG-ATTCAAAAATTTTCGTGTTT
1 TGTTTTCAAAAATTTTCGTGTTT
98742318 TTTTAAAAAA
Statistics
Matches: 214, Mismatches: 42, Indels: 29
0.75 0.15 0.10
Matches are distributed among these distances:
32 14 0.07
33 8 0.04
34 15 0.07
35 63 0.29
36 81 0.38
37 33 0.15
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (35 bp):
TGTTTTCAAAAATTTTCGTGTTTCAAAAATTTTCG
Found at i:98742157 original size:53 final size:53
Alignment explanation
Indices: 98742033--98742317 Score: 201
Period size: 53 Copynumber: 5.4 Consensus size: 53
98742023 AATTCCGGTG
* * * * * *
98742033 TTTCAAAAATTTACGTGTTTC--AAATTCTAGTG-ATTCAAAAAGTTTTCGTGT
1 TTTCAAAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAA-TTTTCATAT
* * *
98742084 TTTCTAAAAATTTTTGTGTTTCAAAAATTTTCGCGTTTTCAAATATTTTCATAT
1 TTTC-AAAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCATAT
* * *
98742138 TTTCAAAAATTTTCGTGTTTTCAACAATTCTCGTG-TTTCAAAAA-TTTCAGTGT
1 TTTCAAAAATTTTCGTG-TTTCAAAAATTTTCGTGTTTTCAAAAATTTTCA-TAT
* * ** * * * * *
98742191 TTTAAAAAATTTTGCACT-TTAAAAAAAATTTCTTGTGTTTCAAAAATTGTCGT-G
1 TTTCAAAAATTTT-C-GTGTTTCAAAAATTTTCGTGT-TTTCAAAAATTTTCATAT
* * * *
98742245 TTTCAAAAATCTTCGTGTTTCCAAAAATTTTCGGGTTTTCAAAAATTCTCGTGA-
1 TTTCAAAAATTTTCGTGTTT-CAAAAATTTTCGTGTTTTCAAAAATTTTCAT-AT
98742299 -TTCAAAAATTTTCGTGTTT
1 TTTCAAAAATTTTCGTGTTT
98742318 TTTTAAAAAA
Statistics
Matches: 183, Mismatches: 36, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
51 4 0.02
52 21 0.11
53 81 0.44
54 56 0.31
55 18 0.10
56 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (53 bp):
TTTCAAAAATTTTCGTGTTTCAAAAATTTTCGTGTTTTCAAAAATTTTCATAT
Found at i:98753296 original size:46 final size:44
Alignment explanation
Indices: 98753229--98753988 Score: 330
Period size: 44 Copynumber: 17.5 Consensus size: 44
98753219 ATTATACAGG
*
98753229 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* *
98753275 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGA-T-AGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAG--A
* * * * * *
98753319 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * *
98753358 TCTTATCTCCC-GA-AGTTACAGTAGAGA-AGATC--ACA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGATTCAGA
* * *
98753398 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* * ** ****
98753444 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
98753488 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * **
98753531 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATTCA-GA
* * * * *
98753575 TCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * *
98753618 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-ATTAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATT-CA-GA
* * * *
98753662 TCTTATCTCCCCGA-AGTTACAGTAGAGA-AGATC--ACA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGATTCAGA
* * *
98753703 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-A-TTCAGA
* * ** ****
98753749 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
* * * *
98753793 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * **
98753836 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATTCA-GA
* * * *
98753880 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCA-GA
* * * * **
98753923 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGATTCA-GA
* *
98753967 TCTTATCTCTCTGAGGTTACAG
1 TCTTATCTCCCTGAGATTACAG
98753989 CAGAGTGGAT
Statistics
Matches: 546, Mismatches: 122, Indels: 94
0.72 0.16 0.12
Matches are distributed among these distances:
36 1 0.00
37 1 0.00
38 13 0.02
39 10 0.02
40 14 0.03
41 44 0.08
42 16 0.03
43 124 0.23
44 216 0.40
45 5 0.01
46 102 0.19
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGATTCAGA
Found at i:98753694 original size:87 final size:86
Alignment explanation
Indices: 98753447--98753672 Score: 362
Period size: 87 Copynumber: 2.6 Consensus size: 86
98753437 TTTCGGATCT
* * * ***
98753447 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAATAAAG-GATCTTATCTCCCTGAGATTACAGCG
98753512 GAGCAGATCGAAGACACTATCC
65 GAGCAGATCGAAGACACTATCC
*
98753534 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTACCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATT-AAATAAAGGATCTTATCTCCCTGAGATTACAGCG
98753599 GAGCAGATCGAAGACACTATCC
65 GAGCAGATCGAAGACACTATCC
98753621 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAATTAAAGGATCTTATCTCCC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAA-TAAAGGATCTTATCTCCC
98753673 CGAAGTTACA
Statistics
Matches: 129, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
86 3 0.02
87 122 0.95
88 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (86 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAATAAAGGATCTTATCTCCCTGAGATTACAGCGG
AGCAGATCGAAGACACTATCC
Done.