Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 303 of 356
Found at i:98753819 original size:305 final size:305
Alignment explanation
Indices: 98753273--98754019 Score: 1301
Period size: 305 Copynumber: 2.5 Consensus size: 305
98753263 AAGAATTTCA
* * * *
98753273 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTG-AGATT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAG-TT
*
98753337 ACAATGGAGCGG-----ATTAAAGGATCTTATCT-CCCGAAGTTACAGTAGAGAAGATCACATCA
64 ACAGTGGAGCGGATTAAATTAAAGGATCTTATCTCCCCGAAGTTACAGTAGAGAAGATCACATCA
98753396 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGT
129 GGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGT
98753461 TACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
194 TACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
98753526 CACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
259 CACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
*
98753573 GATCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
98753638 AGTGGAGCGGATTAAATTAAAGGATCTTATCTCCCCGAAGTTACAGTAGAGAAGATCACATCAGG
66 AGTGGAGCGGATTAAATTAAAGGATCTTATCTCCCCGAAGTTACAGTAGAGAAGATCACATCAGG
98753703 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTA
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTA
98753768 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
196 CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
98753833 CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
261 CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
98753878 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
* * * * * ** *
98753943 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTGGATCACATCAAG
66 AGTGGAGCGGATTAAATTAAAGGATCTTATCTCCCCGAAGTTACAGTAGAGAAGATCACATCAGG
98754008 TCTTATCTCCCT
131 TCTTATCTCCCT
98754020 AAATAGTAGT
Statistics
Matches: 425, Mismatches: 15, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
299 26 0.06
300 42 0.10
304 17 0.04
305 340 0.80
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (305 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAATTAAAGGATCTTATCTCCCCGAAGTTACAGTAGAGAAGATCACATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTA
CAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAG
Found at i:98753843 original size:87 final size:87
Alignment explanation
Indices: 98753752--98753989 Score: 379
Period size: 87 Copynumber: 2.7 Consensus size: 87
98753742 TTTCGGATCT
* * * * *
98753752 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
98753816 GGAGCAGATCGAAGACACTATCC
65 GGAGCAGATCGAAGACACTATCC
*
98753839 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCG
98753904 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
* * *
98753926 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGC
98753990 AGAGTGGATC
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
87 140 0.99
88 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCG
GAGCAGATCGAAGACACTATCC
Found at i:98753970 original size:218 final size:216
Alignment explanation
Indices: 98753441--98753988 Score: 647
Period size: 218 Copynumber: 2.5 Consensus size: 216
98753431 AAAGAATTTC
* * *
98753441 GGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATT
1 GGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAG--ACAGATCTTATCTCCCTGAGATT
* ** * * ** * * * *
98753506 ACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
64 ACAGTGGAGCAGATAAAATAAAGGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAACAA
98753571 AGGATCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTT
129 AGGATCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTT
*
98753636 ACAGTGGAGCGGATTAAATTAAA
194 ACAGTGGAGCGGATTAAAATAAA
* * * * *
98753659 GGATCTTATCTCCCCGA-AGTTACAGTAGAGAAGATC-ACA-TCAGGTCTTATCTCCCTGAGATT
1 GGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCGA-AGACAGATCTTATCTCCCTGAGATT
** * *** * *
98753721 ACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG
64 ACAGTGGAGCAGA--TAA-AATAAAGGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAA
* *
98753786 C-CAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGA
126 CAAAG-GATCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGA
98753850 AGTTACAGTGGAGCGGATTAAAATAAA
190 AGTTACAGTGGAGCGGATTAAAATAAA
* * *
98753877 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGA-AGTT
1 GGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACA-GATCTTATCTCCCTGAGA-TT
* *
98753941 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAG
64 ACAGTGGAGCAGA-TAAAATAAAGGATCTTATCTCCCTGAGGTTACAG
98753989 CAGAGTGGAT
Statistics
Matches: 273, Mismatches: 46, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
215 30 0.11
217 3 0.01
218 208 0.76
219 7 0.03
220 25 0.09
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (216 bp):
GGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAGATCTTATCTCCCTGAGATTAC
AGTGGAGCAGATAAAATAAAGGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAACAAAG
GATCTTACCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTAC
AGTGGAGCGGATTAAAATAAA
Found at i:98754141 original size:83 final size:83
Alignment explanation
Indices: 98753991--98754147 Score: 188
Period size: 83 Copynumber: 1.9 Consensus size: 83
98753981 GGTTACAGCA
* * * * * * * *
98753991 GAGTGGATCACATCAAGTCTTATCTCCCTAAATAGTAGTGAAGCAGACGAAAGAAACCGATCTTA
1 GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
98754056 TCTCCCTAAGTAGTAGTG
66 TCTCCCTAAGTAGTAGTG
* * * * *
98754074 GAGTAGATCGCATCAAGTCTCATCTCTCTAAGCAATAGCGGAGCAGACAAAAGAAACTAATCCTA
1 GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
*
98754139 TCTCTCTAA
66 TCTCCCTAA
98754148 AGTTGCAGTG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
83 60 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (83 bp):
GAGTAGATCACATCAAGTCTCATCTCCCTAAACAATAGCGAAGCAGACAAAAGAAACCAATCCTA
TCTCCCTAAGTAGTAGTG
Found at i:98755528 original size:3 final size:3
Alignment explanation
Indices: 98755522--98755621 Score: 71
Period size: 3 Copynumber: 33.3 Consensus size: 3
98755512 TTTAGCCACT
* *
98755522 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTTA CTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * *
98755567 TTA TCT- TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
98755612 CTA TCA TTA T
1 TTA TTA TTA T
98755622 ATTTATACCT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
2 5 0.07
3 65 0.86
4 6 0.08
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:98755554 original size:12 final size:12
Alignment explanation
Indices: 98755539--98755621 Score: 85
Period size: 12 Copynumber: 6.6 Consensus size: 12
98755529 TTTGTTTATT
*
98755539 TTATTATTATTA
1 TTATTATTACTA
98755551 TTATTATTTACTA
1 TTATTA-TTACTA
98755564 TTATTATCTTTACTA
1 TTATTA---TTACTA
* *
98755579 TTATTGTTAGTA
1 TTATTATTACTA
*
98755591 TTATTACTACTA
1 TTATTATTACTA
98755603 TTATTATTACTA
1 TTATTATTACTA
*
98755615 TCATTAT
1 TTATTAT
98755622 ATTTATACCT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
12 37 0.62
13 11 0.18
15 12 0.20
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.59
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:98758963 original size:31 final size:30
Alignment explanation
Indices: 98758914--98758972 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
98758904 TGCACCATAT
*
98758914 AATCAACTTTGGATTTTCATCTTCCAACTTA
1 AATCAACTTTGGAATTTCA-CTTCCAACTTA
*
98758945 AATCAACTATT-GAATTTCACTTTCAACT
1 AATCAACT-TTGGAATTTCACTTCCAACT
98758973 AATTTGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 15 0.60
32 2 0.08
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (30 bp):
AATCAACTTTGGAATTTCACTTCCAACTTA
Found at i:98759445 original size:14 final size:14
Alignment explanation
Indices: 98759410--98759448 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
98759400 TTTAGGTTAA
98759410 AATTGAATT-ATTT
1 AATTGAATTAATTT
*
98759423 AATCGAATTAATTT
1 AATTGAATTAATTT
*
98759437 AATTAAATTAAT
1 AATTGAATTAAT
98759449 CGATCAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (14 bp):
AATTGAATTAATTT
Found at i:98762307 original size:12 final size:12
Alignment explanation
Indices: 98762292--98762330 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
98762282 TTACATAATT
98762292 ATATACATAAAA
1 ATATACATAAAA
*
98762304 ATATCCATAAAA
1 ATATACATAAAA
*
98762316 ATGTACATAAAA
1 ATATACATAAAA
98762328 ATA
1 ATA
98762331 CATATGTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (12 bp):
ATATACATAAAA
Found at i:98766167 original size:16 final size:17
Alignment explanation
Indices: 98766135--98766168 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
98766125 CACTCTCTCT
98766135 TTTACTCTTCTATTTTC
1 TTTACTCTTCTATTTTC
*
98766152 TTTATTCTTC-ATTTTC
1 TTTACTCTTCTATTTTC
98766168 T
1 T
98766169 GTCTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTACTCTTCTATTTTC
Found at i:98767023 original size:12 final size:12
Alignment explanation
Indices: 98767002--98767031 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
98766992 CCAAGAATGA
*
98767002 TTAAAGAAAACT
1 TTAAAAAAAACT
98767014 TTAAAAAAAACT
1 TTAAAAAAAACT
98767026 TTAAAA
1 TTAAAA
98767032 CAATAATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (12 bp):
TTAAAAAAAACT
Found at i:98767982 original size:63 final size:64
Alignment explanation
Indices: 98767912--98768054 Score: 159
Period size: 63 Copynumber: 2.3 Consensus size: 64
98767902 GGGTTGCACA
* * * *
98767912 ATCCTAGGGTTCGCATAGG-ATATATG-TTCGCATGTTCCTAAGATTCGCATATAGGCTCGTATG
1 ATCCTAGGGTTCGCATAGGCATATAGGATT-GCATGTTCCTAAGATTCACACATAGGCTCGTAAG
* * * *
98767975 ATCCTAGGGTACGCAT-GGCATATAGGATTTCATGTTCCTAGGGTTCACACATAGGCTCGTAAG
1 ATCCTAGGGTTCGCATAGGCATATAGGATTGCATGTTCCTAAGATTCACACATAGGCTCGTAAG
*
98768038 -TCCCTAGGGTTCACATA
1 AT-CCTAGGGTTCGCATA
98768055 TAGGCTTGCA
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
62 3 0.05
63 61 0.92
64 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (64 bp):
ATCCTAGGGTTCGCATAGGCATATAGGATTGCATGTTCCTAAGATTCACACATAGGCTCGTAAG
Found at i:98768043 original size:29 final size:29
Alignment explanation
Indices: 98768011--98768123 Score: 93
Period size: 29 Copynumber: 3.9 Consensus size: 29
98768001 ATTTCATGTT
*
98768011 CCTAGGGTTCACACATAGGCTCGTAAGTC
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
* * *
98768040 CCTAGGGTTCACATATAGGCTTGCAAGTT
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
* *** * * *
98768069 CCTAGGATTTGTACATAGGCTCACATGTA
1 CCTAGGGTTCACACATAGGCTCGCAAGTC
* *
98768098 CCTAGGG-TCTATACATAGGCTTGCAA
1 CCTAGGGTTC-ACACATAGGCTCGCAA
98768124 AATCCTAAGG
Statistics
Matches: 64, Mismatches: 19, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
28 1 0.02
29 63 0.98
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (29 bp):
CCTAGGGTTCACACATAGGCTCGCAAGTC
Found at i:98771423 original size:23 final size:23
Alignment explanation
Indices: 98771338--98771421 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
98771328 TTACAGACAT
*
98771338 ATATAAGTTCACATACTGTTAAC
1 ATATGAGTTCACATACTGTTAAC
98771361 ATATGAGTTCACATACTGTTAAC
1 ATATGAGTTCACATACTGTTAAC
* * *
98771384 ATATGAGTTCACATATTGCTAAT
1 ATATGAGTTCACATACTGTTAAC
98771407 ATATGAGTTCACATA
1 ATATGAGTTCACATA
98771422 TTAGGCATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 57 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (23 bp):
ATATGAGTTCACATACTGTTAAC
Found at i:98774725 original size:42 final size:42
Alignment explanation
Indices: 98774662--98774798 Score: 145
Period size: 42 Copynumber: 3.2 Consensus size: 42
98774652 AGATAAAAAC
*
98774662 ATTTGCTGATAAACTATCACTTGGTTCATG-ATCGAACCACAT
1 ATTTGCAGATAAACTATCACTTGGTTCATGAAT-GAACCACAT
* * * **
98774704 ATTTGCAGATAAACTACCACTT-GTT-GTGAATGCATAACAT
1 ATTTGCAGATAAACTATCACTTGGTTCATGAATGAACCACAT
* *
98774744 ATTTGCAGATAAAAACTGTCACTTGGCTCATGAATGAACCACACT
1 ATTTGCAGAT--AAACTATCACTTGGTTCATGAATGAACCACA-T
98774789 ATTTGCAGAT
1 ATTTGCAGAT
98774799 TATTAAACTG
Statistics
Matches: 76, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
40 18 0.24
41 5 0.07
42 30 0.39
43 2 0.03
44 10 0.13
45 11 0.14
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
ATTTGCAGATAAACTATCACTTGGTTCATGAATGAACCACAT
Found at i:98775749 original size:38 final size:36
Alignment explanation
Indices: 98775695--98776082 Score: 186
Period size: 38 Copynumber: 10.6 Consensus size: 36
98775685 GTCAATGCCG
98775695 ACCTTTAAAAAGGGTTGGGATAAACCTAGT-TAAGACCA
1 ACCTTTAAAAA-GGTTGGGATAAACCTA-TCTAAGA-CA
*
98775733 ACCTTTGAAAAAGGTTGTGATAAACCTATCTAAGACA
1 ACCTTT-AAAAAGGTTGGGATAAACCTATCTAAGACA
* ** *** *
98775770 ACC-TTAAAAAGGTCGATATAGTTCT-TGCTTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAAACCTAT-C-TAAGACA
* * * *
98775806 ACTTTTAAAAACAGTTGGGATAGAGCC-GTCTAA-AGCA
1 ACCTTTAAAAA-GGTTGGGATA-AACCTATCTAAGA-CA
** * * *
98775843 ACC-TTAAAAAGGTTGGGATCGACATTGTCTAAAACA
1 ACCTTTAAAAAGGTTGGGATAAAC-CTATCTAAGACA
* * * *
98775879 ACCTATAAAAAAAGGTTGGGATAGACCTGTCTAAGGCA
1 ACCT-T-TAAAAAGGTTGGGATAAACCTATCTAAGACA
* * *
98775917 ACC-TTAAAAAGGTTAGGATAAACCATGTCTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAAACC-TATCTAAGACA
* * * * *
98775953 ACCTTTAAAAAAGGTCGGAATAGA-CTCGTCTAAGGCA
1 ACCTTT-AAAAAGGTTGGGATAAACCT-ATCTAAGACA
* * * **
98775990 ACC-TTAAAAAGGTTGGTATAGACCATGTCTAAGGTA
1 ACCTTTAAAAAGGTTGGGATAAACC-TATCTAAGACA
* * * *
98776026 ACTTTTAAAAAAGGTTGGGATAGACCTGTTTAA-AGCA
1 ACCTTT-AAAAAGGTTGGGATAAACCTATCTAAGA-CA
*
98776063 ACC-TTAAAAAAGTTGGGATA
1 ACCTTTAAAAAGGTTGGGATA
98776083 GATATTATTT
Statistics
Matches: 281, Mismatches: 45, Indels: 51
0.75 0.12 0.14
Matches are distributed among these distances:
34 2 0.01
35 69 0.25
36 60 0.21
37 49 0.17
38 77 0.27
39 24 0.09
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (36 bp):
ACCTTTAAAAAGGTTGGGATAAACCTATCTAAGACA
Found at i:98775873 original size:36 final size:36
Alignment explanation
Indices: 98775833--98776125 Score: 236
Period size: 36 Copynumber: 7.9 Consensus size: 36
98775823 GGATAGAGCC
*
98775833 GTCTAAAGCAACCTTAAAAAGGTTGGGATCGACATT
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
* *
98775869 GTCTAAAACAACCTATAAAAAAAGGTTGGGATAGAC-CT
1 GTCTAAAGCAACCT-T--AAAAAGGTTGGGATAGACATT
* * *
98775907 GTCTAAGGCAACCTTAAAAAGGTTAGGATAAACCA-T
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGA-CATT
* * * *
98775943 GTCTAAGGCAACCTTTAAAAAAGGTCGGAATAGAC-TC
1 GTCTAAAGCAACC-TT-AAAAAGGTTGGGATAGACATT
* *
98775980 GTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCA-T
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGA-CATT
* * * *
98776016 GTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGAC-CT
1 GTCTAAAGCAAC-CTT-AAAAAGGTTGGGATAGACATT
* * *
98776053 GTTTAAAGCAACCTTAAAAAAGTTGGGATAGATATT
1 GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
* * * *
98776089 ATTTAAAACAACCTATAAAAAAAGATTGGGATAGACA
1 GTCTAAAGCAACCT-T--AAAAAGGTTGGGATAGACA
98776126 CGTATAATAT
Statistics
Matches: 210, Mismatches: 30, Indels: 31
0.77 0.11 0.11
Matches are distributed among these distances:
35 46 0.22
36 57 0.27
37 32 0.15
38 42 0.20
39 33 0.16
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (36 bp):
GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACATT
Found at i:98775911 original size:74 final size:74
Alignment explanation
Indices: 98775811--98776124 Score: 336
Period size: 73 Copynumber: 4.3 Consensus size: 74
98775801 AGGCAACTTT
* *
98775811 TAAAAACA-GTTGGGATAGAGCC-GTCTAAAGCAACCTTAAAAAGGTTGGGATCGA-CATTGTCT
1 TAAAAAAAGGTTGGGATAGA-CCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCA-TGTCT
98775873 AAAACAACCTA
64 AAAACAACCTA
* * *
98775884 TAAAAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAAGGTTAGGATAAACCATGTCTAA
1 TAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAA
**
98775949 GGCAACCT-
66 AACAACCTA
* * * * *
98775957 TTAAAAAAGGTCGGAATAGA-CTCGTCTAAGGCAACCTTAAAAAGGTTGGTATAGACCATGTCTA
1 TAAAAAAAGGTTGGGATAGACCT-GTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTA
*** *
98776021 AGGTAA-CTT
65 AAACAACCTA
* * * * * *
98776030 TTAAAAAAGGTTGGGATAGACCTGTTTAAAGCAACCTTAAAAAAGTTGGGATAGA-TATTATTTA
1 TAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCA-TGTCTA
98776094 AAACAACCTA
65 AAACAACCTA
*
98776104 TAAAAAAAGATTGGGATAGAC
1 TAAAAAAAGGTTGGGATAGAC
98776125 ACGTATAATA
Statistics
Matches: 204, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
72 5 0.02
73 122 0.60
74 75 0.37
75 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (74 bp):
TAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAAGGTTGGGATAGACCATGTCTAA
AACAACCTA
Found at i:98775976 original size:147 final size:146
Alignment explanation
Indices: 98775799--98776082 Score: 376
Period size: 147 Copynumber: 1.9 Consensus size: 146
98775789 AGTTCTTGCT
* * * *
98775799 TAAGGCAACTTTTAAAAACAGTTGGGATAGAGC-CGTCTAAAGCAACCTTAAAAAGGTTGGGATC
1 TAAGGCAACCTTTAAAAACAGTCGGAATAGA-CTCGTCTAAAGCAACCTTAAAAAGGTTGGGATA
*
98775863 GA-CATTGTCTAAAACAACCTATAAAAAAAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAAAA
65 GACCA-TGTCTAAAACAA-CTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAA
*
98775927 GGTTAGGATAAACCATGTC
128 AGTTAGGATAAACCATGTC
* *
98775946 TAAGGCAACCTTTAAAAA-AGGTCGGAATAGACTCGTCTAAGGCAACCTTAAAAAGGTTGGTATA
1 TAAGGCAACCTTTAAAAACA-GTCGGAATAGACTCGTCTAAAGCAACCTTAAAAAGGTTGGGATA
*** * * *
98776010 GACCATGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCTGTTTAAAGCAACCTTAAAAAAG
65 GACCATGTCTAAAACAACTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAAAG
*
98776075 TTGGGATA
130 TTAGGATA
98776083 GATATTATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
146 52 0.44
147 65 0.55
148 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (146 bp):
TAAGGCAACCTTTAAAAACAGTCGGAATAGACTCGTCTAAAGCAACCTTAAAAAGGTTGGGATAG
ACCATGTCTAAAACAACTATAAAAAAAGGTTGGGATAGACCTGTCTAAAGCAACCTTAAAAAAGT
TAGGATAAACCATGTC
Found at i:98776078 original size:73 final size:73
Alignment explanation
Indices: 98775699--98776084 Score: 365
Period size: 73 Copynumber: 5.3 Consensus size: 73
98775689 ATGCCGACCT
* * * * * * *
98775699 TTAAAAAGGGTTGGGATAAACC-TAGT-TAAGACCAACCTTTGAAAAAGGTTGTGATAAACCTAT
1 TTAAAAA-GGTTGGGATAGACCAT-GTCTAAG-GCAACTTTTAAAAAAGGTTGGGATAGACCTGT
98775762 CT-AAGACAACC
63 CTAAAG-CAACC
* ** ** *
98775773 TTAAAAAGGTCGATATAGTTCTTG-CTTAAGGCAACTTTTAAAAACA-GTTGGGATAGAGCC-GT
1 TTAAAAAGGTTGGGATAGACCATGTC-TAAGGCAACTTTTAAAAA-AGGTTGGGATAGA-CCTGT
98775835 CTAAAGCAACC
63 CTAAAGCAACC
* ** * *
98775846 TTAAAAAGGTTGGGATCGA-CATTGTCTAAAACAACCTATAAAAAAAGGTTGGGATAGACCTGTC
1 TTAAAAAGGTTGGGATAGACCA-TGTCTAAGGCAA-CTTTTAAAAAAGGTTGGGATAGACCTGTC
*
98775910 TAAGGCAACC
64 TAAAGCAACC
* * * * *
98775920 TTAAAAAGGTTAGGATAAACCATGTCTAAGGCAACCTTTAAAAAAGGTCGGAATAGA-CTCGTCT
1 TTAAAAAGGTTGGGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCT-GTCT
*
98775984 AAGGCAACC
65 AAAGCAACC
* * *
98775993 TTAAAAAGGTTGGTATAGACCATGTCTAAGGTAACTTTTAAAAAAGGTTGGGATAGACCTGTTTA
1 TTAAAAAGGTTGGGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCTGTCTA
98776058 AAGCAACC
66 AAGCAACC
*
98776066 TTAAAAAAGTTGGGATAGA
1 TTAAAAAGGTTGGGATAGA
98776085 TATTATTTAA
Statistics
Matches: 254, Mismatches: 44, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
72 3 0.01
73 171 0.67
74 78 0.31
75 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (73 bp):
TTAAAAAGGTTGGGATAGACCATGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGACCTGTCTA
AAGCAACC
Found at i:98779243 original size:47 final size:47
Alignment explanation
Indices: 98779029--98779242 Score: 365
Period size: 47 Copynumber: 4.6 Consensus size: 47
98779019 TAAATAATGT
*
98779029 ATACTTTACCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
*
98779076 ATACTTTATCCGGGTAAAATATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
*
98779123 ATACTTTATCCGAGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
* * *
98779170 ATACTTTATTCGGGTAAAGTATGCATAATTTGTGAATCTGCTAATAC
1 ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
*
98779217 ATACTTTATCTGGGTAAAGTATGCAT
1 ATACTTTATCCGGGTAAAGTATGCAT
98779243 ACATTCTTAA
Statistics
Matches: 157, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 157 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (47 bp):
ATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGCTAATAC
Found at i:98779717 original size:15 final size:15
Alignment explanation
Indices: 98779699--98779742 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
98779689 CTCAAGACCA
98779699 TAAAATCTTAAACCT
1 TAAAATCTTAAACCT
** *
98779714 TAAAATAATAGACCT
1 TAAAATCTTAAACCT
*
98779729 TAAACTCTTAAACC
1 TAAAATCTTAAACC
98779743 ACAAACCATA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (15 bp):
TAAAATCTTAAACCT
Found at i:98779881 original size:22 final size:22
Alignment explanation
Indices: 98779856--98779897 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
98779846 AGATTAATCG
98779856 CAAACCCATAATCACAAAACCC
1 CAAACCCATAATCACAAAACCC
* *
98779878 CAAATCCATAATCATAAAAC
1 CAAACCCATAATCACAAAAC
98779898 TCTAAAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.14
Consensus pattern (22 bp):
CAAACCCATAATCACAAAACCC
Found at i:98779909 original size:22 final size:22
Alignment explanation
Indices: 98779861--98779910 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
98779851 AATCGCAAAC
*
98779861 CCATAATCACAAAACCCCAAAT
1 CCATAATCACAAAACCCAAAAT
* *
98779883 CCATAATCATAAAACTCTAAAAT
1 CCATAATCACAAAAC-CCAAAAT
98779906 -CATAA
1 CCATAA
98779911 ACCCCAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (22 bp):
CCATAATCACAAAACCCAAAAT
Found at i:98780481 original size:132 final size:132
Alignment explanation
Indices: 98780244--98780532 Score: 497
Period size: 132 Copynumber: 2.2 Consensus size: 132
98780234 CTGACAAGTG
* *
98780244 TATCCCAACACTTAGGAAAGTGTCACCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
* * *
98780309 TTATTCAAGCGTTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAG
66 TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
98780374 TC
131 TC
* *
98780376 TATCCCAACACTTAGAAAAGTGTCGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
*
98780441 TTATTCAAGCATTGCCTTAGGCATACATATCCTAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
98780506 TC
131 TC
*
98780508 TATACCAACACTTAGGAAAGTGTCG
1 TATCCCAACACTTAGGAAAGTGTCG
98780533 TCTTAGGAAA
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 147 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (132 bp):
TATCCCAACACTTAGGAAAGTGTCGCCACAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
TTATTCAAGCATTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
TC
Found at i:98780685 original size:91 final size:92
Alignment explanation
Indices: 98780524--98780690 Score: 246
Period size: 91 Copynumber: 1.8 Consensus size: 92
98780514 AACACTTAGG
98780524 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
1 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
98780589 ACCAACCCTTAGGAAAATGTCACCACA
66 ACCAACCCTTAGGAAAATGTCACCACA
** * * * * * *
98780616 AAAGTGTCGTCTTAGGACTACA-TAAAGGCAACTCTTATTTAAGCGTTGCTTTAGGCATACATCT
1 AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
*
98780680 CCCAACCCTTA
66 ACCAACCCTTA
98780691 TACAAAGAGC
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 46 0.70
92 20 0.30
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (92 bp):
AAAGTGTCGTCTTAGGAAAACACAAAAGCCAAATCTTATTCAAGCGTTGCCTTAGGCATACATAT
ACCAACCCTTAGGAAAATGTCACCACA
Found at i:98798125 original size:43 final size:43
Alignment explanation
Indices: 98798077--98798225 Score: 174
Period size: 43 Copynumber: 3.5 Consensus size: 43
98798067 AAAAAAGCTG
* * *
98798077 CTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAAATGCCG
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
* *
98798120 TTATAGAACATGACCTTTAGCGGAAC-TTTCCCTACAAACGCCA
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCC-ACAAACGCCA
* * * **
98798163 CTAAAGAACATGACCTTTAGCGGTGCTTTTACCACAAACGCTT
1 CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
* *
98798206 CTAAAGAACATGACATTTAG
1 CTATAGAACATGACCTTTAG
98798226 TGGCTGCCAC
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.07
43 80 0.88
44 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
CTATAGAACATGACCTTTAGCGGAGCTTTTCCCACAAACGCCA
Found at i:98801011 original size:12 final size:12
Alignment explanation
Indices: 98800994--98801018 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98800984 AAAATAAGAC
98800994 TTTAGTGGCATT
1 TTTAGTGGCATT
98801006 TTTAGTGGCATT
1 TTTAGTGGCATT
98801018 T
1 T
98801019 GGACAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TTTAGTGGCATT
Found at i:98801219 original size:123 final size:118
Alignment explanation
Indices: 98801084--98801432 Score: 369
Period size: 121 Copynumber: 2.9 Consensus size: 118
98801074 ATAACAGCAT
* *
98801084 TTTTGGTCCAAACTCCACTAAAAACTGAGCATTAGCGGCGTTTCTGGTCCAAACGCCACTAAAAA
1 TTTTGGTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTT-TGGTCCAAACGCCACTAAAAA
* * * *
98801149 CTAATCAATAGCGATGTTTTTGGCCCAAAAGCTGC-TAAAAACTGAGCAATAGCATCG
65 CTGAGCAATAGCG-CGTTTCTGGCCC-AAA-C-GCATAAAAACTGAGCAATAGCATCG
* * * * *
98801206 TTTTCGGTTCAAACGCCATTAAAAACTAAGTAATAGCGGCATTTTCGGTCCAAACGCCACTAAAA
1 TTTT-GGTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTT-GGTCCAAACGCCACTAAAA
* * *
98801271 ACTGAGCAAAAGCCGCGTTTCTGGTCCAAACGCATTAAAACTGAGCAATAGCAGT-G
64 ACTGAGCAATAG-CGCGTTTCTGGCCCAAACGCATAAAAACTGAGCAATAGCA-TCG
* * * * *
98801327 TTTGTAGTCCAAACGCCACTAAAAATTGAGCAATAGTGGCGTTTTTTGTCCCAACGCCACTAAAA
1 TTT-TGGTCCAAACGCCACTAAAAACTGAGCAATAGCGGCG-TTTTGGTCCAAACGCCACTAAAA
* * *
98801392 ACTGAGCAATAGCAGCATTTCTGGTCCAAACACCATAAAAA
64 ACTGAGCAATAGC-GCGTTTCTGGCCCAAAC-GCATAAAAA
98801433 GTTGAGCAGC
Statistics
Matches: 190, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
120 3 0.02
121 95 0.50
122 21 0.11
123 69 0.36
124 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (118 bp):
TTTTGGTCCAAACGCCACTAAAAACTGAGCAATAGCGGCGTTTTGGTCCAAACGCCACTAAAAAC
TGAGCAATAGCGCGTTTCTGGCCCAAACGCATAAAAACTGAGCAATAGCATCG
Found at i:98801440 original size:41 final size:41
Alignment explanation
Indices: 98801062--98801432 Score: 349
Period size: 41 Copynumber: 9.1 Consensus size: 41
98801052 GGCGTTTGCA
* * * * *
98801062 AAAAACTCAGCAATAACAGCATTTTTGGTCCAAACTCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* *
98801103 AAAAACTGAGCATTAGCGGCGTTTCTGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* * * * * * **
98801144 AAAAACTAATCAATAGC-GATGTTTTTGGCCCAAAAGCTGCT
1 AAAAACTGAGCAATAGCAG-CGTTTCTGGTCCAAACGCCACT
* * *
98801185 AAAAACTGAGCAATAGCATCGTTT-TCGGTTCAAACGCCATT
1 AAAAACTGAGCAATAGCAGCGTTTCT-GGTCCAAACGCCACT
* * * *
98801226 AAAAACTAAGTAATAGCGGCATTT-TCGGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCT-GGTCCAAACGCCACT
* *
98801267 AAAAACTGAGCAAAAGCCGCGTTTCTGGTCCAAACG-CA-T
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* * * *
98801306 TAAAACTGAGCAATAGCAGTGTTTGTAGTCCAAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* ** * * *
98801347 AAAAATTGAGCAATAGTGGCGTTTTTTGTCCCAACGCCACT
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
* *
98801388 AAAAACTGAGCAATAGCAGCATTTCTGGTCCAAACACCA-T
1 AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
98801428 AAAAA
1 AAAAA
98801433 GTTGAGCAGC
Statistics
Matches: 264, Mismatches: 60, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
39 31 0.12
40 12 0.05
41 220 0.83
42 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
AAAAACTGAGCAATAGCAGCGTTTCTGGTCCAAACGCCACT
Found at i:98801943 original size:21 final size:21
Alignment explanation
Indices: 98801919--98801964 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
98801909 TGGGTTTAGG
98801919 GTTTAATATTTAAG-GTTTAAT
1 GTTT-ATATTTAAGTGTTTAAT
* *
98801940 GTTTATATTTTAGTGTTTTAT
1 GTTTATATTTAAGTGTTTAAT
98801961 GTTT
1 GTTT
98801965 TAGGGTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.61
Consensus pattern (21 bp):
GTTTATATTTAAGTGTTTAAT
Found at i:98802036 original size:21 final size:21
Alignment explanation
Indices: 98801996--98802036 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
98801986 TTAAATTTAT
*
98801996 GGTTTAGGGTTTATTATTTTG
1 GGTTTAGGGTTTAATATTTTG
* *
98802017 GGTTTGGGGTTTAATGTTTT
1 GGTTTAGGGTTTAATATTTT
98802037 AAAGTTTGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (21 bp):
GGTTTAGGGTTTAATATTTTG
Found at i:98802094 original size:22 final size:21
Alignment explanation
Indices: 98802047--98802094 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
98802037 AAAGTTTGTA
*
98802047 GTTTGGGGTTTAGTGTTGAAG
1 GTTTTGGGTTTAGTGTTGAAG
* * *
98802068 ATTTTGGGTCTTAGTGTTTATG
1 GTTTTGGGT-TTAGTGTTGAAG
98802090 GTTTT
1 GTTTT
98802095 AAAGGTTAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.12, C:0.02, G:0.33, T:0.52
Consensus pattern (21 bp):
GTTTTGGGTTTAGTGTTGAAG
Found at i:98802601 original size:41 final size:41
Alignment explanation
Indices: 98802480--98802610 Score: 167
Period size: 41 Copynumber: 3.2 Consensus size: 41
98802470 GTGTTTTCTA
** *
98802480 AAAAATGCCGTTAAAGATCGAGAATTAGTGGTGCATTTTTG
1 AAAAATGCCACTAAAGATCGAGAATTAGCGGTGCATTTTTG
* * *
98802521 AAAAACGCCACTAAAGATCGAGAATTAGCGGCGCTTTTTTG
1 AAAAATGCCACTAAAGATCGAGAATTAGCGGTGCATTTTTG
*
98802562 AAAAATGCCACTAAAGATCGAGAATTAACGGTG-ACTTTTT-
1 AAAAATGCCACTAAAGATCGAGAATTAGCGGTGCA-TTTTTG
*
98802602 AAAACTGCC
1 AAAAATGCC
98802611 GCAAAAAGTT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 8 0.10
41 70 0.90
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.27
Consensus pattern (41 bp):
AAAAATGCCACTAAAGATCGAGAATTAGCGGTGCATTTTTG
Found at i:98806773 original size:20 final size:20
Alignment explanation
Indices: 98806748--98806791 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
98806738 TCGAGTTGTG
98806748 AACAAGAGGTCTAGCGGTAA
1 AACAAGAGGTCTAGCGGTAA
98806768 AACAAGAGGTCTAGCGGTAA
1 AACAAGAGGTCTAGCGGTAA
98806788 AACA
1 AACA
98806792 CTCTCGTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.14
Consensus pattern (20 bp):
AACAAGAGGTCTAGCGGTAA
Found at i:98813167 original size:26 final size:26
Alignment explanation
Indices: 98813138--98813190 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
98813128 TCAAACATGC
98813138 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
98813164 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
98813190 A
1 A
98813191 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:98814708 original size:26 final size:26
Alignment explanation
Indices: 98814673--98814744 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
98814663 TGAAATGCCC
*
98814673 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
98814699 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
98814725 ATCATGGAATATTTACCTAA
1 ATCATGGAACATTTACCTAA
98814745 TACATGGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:98814752 original size:20 final size:20
Alignment explanation
Indices: 98814727--98814764 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
98814717 AACCCATTAT
98814727 CATGGAATATTTACCTAATA
1 CATGGAATATTTACCTAATA
*
98814747 CATGGAATATTTATCTAA
1 CATGGAATATTTACCTAA
98814765 CCCATTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (20 bp):
CATGGAATATTTACCTAATA
Found at i:98823285 original size:23 final size:22
Alignment explanation
Indices: 98823235--98823286 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
98823225 CTATCAAGAC
*
98823235 CCTCAAGTTATCCCTAAGGCCA
1 CCTCAAGTTATCCCTAAGGCAA
*
98823257 CTCTCAAGTTATCCCTAAGGTAA
1 C-CTCAAGTTATCCCTAAGGCAA
98823280 TCCTCAA
1 -CCTCAA
98823287 AACGGACACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 24 0.92
24 1 0.04
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.27
Consensus pattern (22 bp):
CCTCAAGTTATCCCTAAGGCAA
Found at i:98825044 original size:38 final size:39
Alignment explanation
Indices: 98825002--98825089 Score: 133
Period size: 40 Copynumber: 2.3 Consensus size: 39
98824992 GTCCAACCCA
*
98825002 ACACACCATGTA-GGGATAAAATCGACCCACCCATCCCT
1 ACACACCATATAGGGGATAAAATCGACCCACCCATCCCT
* *
98825040 ACACACCATATATGGGGATACAATCGACCCATCCATCCCT
1 ACACACCATATA-GGGGATAAAATCGACCCACCCATCCCT
98825080 ACACACCATA
1 ACACACCATA
98825090 AGGTACTGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 11 0.24
40 34 0.76
ACGTcount: A:0.35, C:0.36, G:0.11, T:0.17
Consensus pattern (39 bp):
ACACACCATATAGGGGATAAAATCGACCCACCCATCCCT
Found at i:98826688 original size:18 final size:18
Alignment explanation
Indices: 98826662--98826697 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
98826652 GAAGATCGTT
* *
98826662 CATATATATATATGTACA
1 CATACATATATATATACA
98826680 CATACATATATATATACA
1 CATACATATATATATACA
98826698 TGTGTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (18 bp):
CATACATATATATATACA
Found at i:98828742 original size:9 final size:9
Alignment explanation
Indices: 98828730--98828797 Score: 54
Period size: 9 Copynumber: 7.9 Consensus size: 9
98828720 ATATCATATC
98828730 ATAACTTAT
1 ATAACTTAT
*
98828739 ATAACTTAC
1 ATAACTTAT
*
98828748 ATAAATT-T
1 ATAACTTAT
98828756 ATAACTTAT
1 ATAACTTAT
98828765 AT-A--TAT
1 ATAACTTAT
* *
98828771 ATATCATAT
1 ATAACTTAT
*
98828780 CATAACTTAC
1 -ATAACTTAT
98828790 ATAACTTA
1 ATAACTTA
98828798 ATTATACTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
6 5 0.11
8 7 0.15
9 28 0.61
10 6 0.13
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (9 bp):
ATAACTTAT
Found at i:98828809 original size:51 final size:52
Alignment explanation
Indices: 98828710--98828810 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 52
98828700 ACTTGACATA
* *
98828710 TATATATATCATATCATATCATAACTTATATAACTTACATAAATTTATAACT
1 TATATATATCATATCATATCATAACTTACATAACTTACATAAACTTATAACT
*
98828762 TATATATAT-ATATCATATCATAACTTACATAACTTA-ATTATACTTATAA
1 TATATATATCATATCATATCATAACTTACATAACTTACA-TAAACTTATAA
98828811 ATAAACAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 1 0.02
51 35 0.78
52 9 0.20
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.43
Consensus pattern (52 bp):
TATATATATCATATCATATCATAACTTACATAACTTACATAAACTTATAACT
Found at i:98833324 original size:15 final size:15
Alignment explanation
Indices: 98833289--98833325 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
98833279 AAGCACTTTA
98833289 AAGAAA-AACATTTT
1 AAGAAAGAACATTTT
*
98833303 AATAAAGAACATTTT
1 AAGAAAGAACATTTT
98833318 AAGAAAGA
1 AAGAAAGA
98833326 TATAAGCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.24
Consensus pattern (15 bp):
AAGAAAGAACATTTT
Found at i:98833826 original size:13 final size:14
Alignment explanation
Indices: 98833810--98833838 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98833800 TTTTAAATAT
98833810 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
98833823 TTATAATGGTTTAA
1 TTATAATGGTTTAA
98833837 TT
1 TT
98833839 CGTCGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:98834684 original size:43 final size:42
Alignment explanation
Indices: 98834636--98834939 Score: 214
Period size: 43 Copynumber: 7.1 Consensus size: 42
98834626 AAAAATGACA
* * * **
98834636 TTTAGCAGCGTTTGTATGAAAAACGCCAATAAAGGTCACGTTC
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAA-GTCACGTTC
* * * * * * * *
98834679 TTTAGCGACGTTTATATGAAAAGCGTCGTTGAAAATCACATTT
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCT-AAAGTCACGTTC
* * * ** *
98834722 TTTAGTGAC-TATTATGTGAAAAATGCCGCTGAAAGTCATGTTC
1 TTTAGCGGCGT-TTGTGTGAAAAGCGCCGCT-AAAGTCACGTTC
* * *
98834765 TTTAACGACGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTC
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAA-GTCACGTTC
* * *
98834808 TTTAGCGGCATTTGTGTGAAAAGCACCGCTGAAAATCACGTTC
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCT-AAAGTCACGTTC
* * *** * *
98834851 TTTAGCGGCGTTTGTATGAAAGGCGCTATTGAAGGTCACGTTT
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCT-AAAGTCACGTTC
* * *
98834894 TTTAACGGCATTTGTGTGAAAAGCACCGCTAAAAGTCACGTTC
1 TTTAGCGGCGTTTGTGTGAAAAGCGCCGCT-AAAGTCACGTTC
98834937 TTT
1 TTT
98834940 TAACAAATTT
Statistics
Matches: 202, Mismatches: 54, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
42 4 0.02
43 191 0.95
44 7 0.03
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGTCACGTTC
Found at i:98834812 original size:86 final size:86
Alignment explanation
Indices: 98834671--98834939 Score: 238
Period size: 86 Copynumber: 3.1 Consensus size: 86
98834661 CCAATAAAGG
* * * ** * * * *
98834671 TCACGTTCTTTAGCGACGTTTATATGAAAAGCGTCGTTGAAA-ATCACATTTTTTAGTGAC-TAT
1 TCACGTTCTTTAACGACGTTTGTATGAAAAGCGCCACT-AAAGGTCACGTTCTTTAGCGACAT-T
** *
98834734 TATGTGAAAAATGCCGCTGAAAG
64 TATGTGAAAAACACCGCTGAAAA
* * * *
98834757 TCATGTTCTTTAACGACGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGGCATTTG
1 TCACGTTCTTTAACGACGTTTGTATGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTA
*
98834822 TGTGAAAAGCACCGCTGAAAA
66 TGTGAAAAACACCGCTGAAAA
* * * * * * * * * *
98834843 TCACGTTCTTTAGCGGCGTTTGTATGAAAGGCGCTATTGAAGGTCACGTTTTTTAACGGCATTTG
1 TCACGTTCTTTAACGACGTTTGTATGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTA
*
98834908 TGTGAAAAGCACCGCT-AAAA
66 TGTGAAAAACACCGCTGAAAA
98834928 GTCACGTTCTTT
1 -TCACGTTCTTT
98834940 TAACAAATTT
Statistics
Matches: 153, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
85 7 0.05
86 145 0.95
87 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (86 bp):
TCACGTTCTTTAACGACGTTTGTATGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTA
TGTGAAAAACACCGCTGAAAA
Found at i:98834898 original size:129 final size:129
Alignment explanation
Indices: 98834644--98834939 Score: 306
Period size: 129 Copynumber: 2.3 Consensus size: 129
98834634 CATTTAGCAG
* * * * ** *
98834644 CGTTTGTATGAAAAACGCCAATAAAGGTCACGTTCTTTAGCGACGTTTATATGAAAAGCGTCGTT
1 CGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTATATGAAAAGCACCGCT
* * * * * *
98834709 GAAAATCACATTTTTTAGTGACTATTATGTGAAAAATGCCGCTGAAAGTCATGTTCTTTAACGA
66 GAAAATCACATTCTTTAGCGACTATTATATGAAAAACGCCACTGAAAGTCACGTTCTTTAACGA
* * *
98834773 CGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGGCATTTGTGTGAAAAGCACCGCT
1 CGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTATATGAAAAGCACCGCT
* * * ** * * * * *
98834838 GAAAATCACGTTCTTTAGCGGCGT-TTGTATGAAAGGCGCTATTGAAGGTCACGTTTTTTAACGG
66 GAAAATCACATTCTTTAGCGAC-TATTATATGAAAAACGCCACTGAAAGTCACGTTCTTTAACGA
* * * *
98834902 CATTTGTGTGAAAAGCACCGCTAAAAGTCACGTTCTTT
1 CGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTT
98834940 TAACAAATTT
Statistics
Matches: 136, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
129 135 0.99
130 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (129 bp):
CGTTTGTGTGAAAAGCGCCACTAAAGGTCACGTTCTTTAGCGACATTTATATGAAAAGCACCGCT
GAAAATCACATTCTTTAGCGACTATTATATGAAAAACGCCACTGAAAGTCACGTTCTTTAACGA
Found at i:98838283 original size:9 final size:9
Alignment explanation
Indices: 98838269--98838317 Score: 53
Period size: 9 Copynumber: 5.0 Consensus size: 9
98838259 TAAGTATAAT
98838269 TAAGTTATG
1 TAAGTTATG
98838278 TAAGTTATG
1 TAAGTTATG
*
98838287 ATATATATTTATG
1 ---TA-AGTTATG
98838300 TAAGTTATG
1 TAAGTTATG
98838309 TAAGTTATG
1 TAAGTTATG
98838318 ATATGATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 24 0.71
10 2 0.06
12 2 0.06
13 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:98838307 original size:31 final size:32
Alignment explanation
Indices: 98838269--98838353 Score: 111
Period size: 31 Copynumber: 2.6 Consensus size: 32
98838259 TAAGTATAAT
*
98838269 TAAGTTATGTAAGTTATGATAT-ATATTTATG
1 TAAGTTATGTAAGTTATGATATGATATATATG
*
98838300 TAAGTTATGTAAGTTATGATATGATATATATT
1 TAAGTTATGTAAGTTATGATATGATATATATG
98838332 TATTTA-TTATGTAAGTTATGAT
1 TA---AGTTATGTAAGTTATGAT
98838354 CCAAATTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
31 22 0.46
32 9 0.19
34 16 0.33
35 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.49
Consensus pattern (32 bp):
TAAGTTATGTAAGTTATGATATGATATATATG
Found at i:98838342 original size:34 final size:36
Alignment explanation
Indices: 98838283--98838353 Score: 119
Period size: 34 Copynumber: 2.0 Consensus size: 36
98838273 TTATGTAAGT
98838283 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
*
98838319 TATGATATATATTTAT-TTA-TTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
98838353 T
1 T
98838354 CCAAATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 16 0.47
35 2 0.06
36 16 0.47
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (36 bp):
TATGATATATATTTATGTAAGTTATGTAAGTTATGA
Found at i:98838421 original size:13 final size:13
Alignment explanation
Indices: 98838403--98838428 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98838393 TGATTATCTT
98838403 CTTTAAATTTTAA
1 CTTTAAATTTTAA
98838416 CTTTAAATTTTAA
1 CTTTAAATTTTAA
98838429 TCCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:98839586 original size:12 final size:12
Alignment explanation
Indices: 98839569--98839599 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98839559 CAATAGCATG
98839569 CTCCATTCTCAA
1 CTCCATTCTCAA
*
98839581 CTCCATTCTCAC
1 CTCCATTCTCAA
98839593 CTCCATT
1 CTCCATT
98839600 TACAACTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.35
Consensus pattern (12 bp):
CTCCATTCTCAA
Found at i:98840636 original size:22 final size:22
Alignment explanation
Indices: 98840593--98840636 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
98840583 AACATATAAT
*
98840593 TAAATTAATCAAAATTTACAAA
1 TAAATTAATCAAAAATTACAAA
*
98840615 TAAA-TAATCCAAAAATTGCAAA
1 TAAATTAAT-CAAAAATTACAAA
98840637 CAACAACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAATTAATCAAAAATTACAAA
Found at i:98843108 original size:18 final size:18
Alignment explanation
Indices: 98843072--98843119 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
98843062 AAAATGTACT
*
98843072 TTAAATATATAACTCATA
1 TTAAATATATAACTAATA
98843090 TTAAATAT-TAACATAATA
1 TTAAATATATAAC-TAATA
* *
98843108 TAAAAAATATAA
1 TTAAATATATAA
98843120 ACTTAACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 4 0.16
18 18 0.72
19 3 0.12
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAATATATAACTAATA
Found at i:98843595 original size:121 final size:118
Alignment explanation
Indices: 98843436--98843654 Score: 278
Period size: 121 Copynumber: 1.8 Consensus size: 118
98843426 TCAAATTGTT
* ** * * * *
98843436 ATTGCAATATTTGCAACGTTTATGAAAATGTCACTAATGAATAACTTTTGTGGTGTTTTCGGTTA
1 ATTGCAATATTTGCAACATTTACAAAAAAGTCACTAATGAATAACTTTTGCGGTATTTTCAG-T-
*
98843501 AAATGTCACTAAAAATTTAA-TTTCATGTAGTGAAACCGTGTTATTTAAGTCATGAA
64 -AACGTCACTAAAAATTTAATTTTC-TGTAGTGAAACCGTGTTATTTAAGTCATGAA
* * * * *
98843557 ATTGCAATATTTGCAGCATTTACAAAAAAGTCATTAATGTATAATTTTTGCGGTATTTTCAGTCA
1 ATTGCAATATTTGCAACATTTACAAAAAAGTCACTAATGAATAACTTTTGCGGTATTTTCAGTAA
98843622 CGTCACTAAAAATTTAATTTTCTGTAGTGAAAC
66 CGTCACTAAAAATTTAATTTTCTGTAGTGAAAC
98843655 AGTGCTGTTT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
118 28 0.33
119 4 0.05
120 1 0.01
121 51 0.61
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (118 bp):
ATTGCAATATTTGCAACATTTACAAAAAAGTCACTAATGAATAACTTTTGCGGTATTTTCAGTAA
CGTCACTAAAAATTTAATTTTCTGTAGTGAAACCGTGTTATTTAAGTCATGAA
Found at i:98849004 original size:16 final size:16
Alignment explanation
Indices: 98848979--98849010 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98848969 GGAATGATTT
*
98848979 GCAGAGCCTTGGTTAA
1 GCAGACCCTTGGTTAA
98848995 GCAGACCCTTGGTTAA
1 GCAGACCCTTGGTTAA
98849011 CTCCTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (16 bp):
GCAGACCCTTGGTTAA
Found at i:98856113 original size:39 final size:39
Alignment explanation
Indices: 98856067--98856149 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
98856057 CTCTGATGAG
*
98856067 CTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGTA
1 CTTCAGTTAGCCTCCAGGCTTCCGTTTAGCACTTATGTA
*
98856106 CTTCAGTTAGCCTCCAGGCTTCCGTTTAGCACTTATGTG
1 CTTCAGTTAGCCTCCAGGCTTCCGTTTAGCACTTATGTA
98856145 CTTCA
1 CTTCA
98856150 ACTAGATTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.36
Consensus pattern (39 bp):
CTTCAGTTAGCCTCCAGGCTTCCGTTTAGCACTTATGTA
Found at i:98856165 original size:39 final size:39
Alignment explanation
Indices: 98856078--98856166 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
98856068 TTCAGTTAGC
** *
98856078 CTCCGGGCTTCCGTTTAGCACTTATGTACTTCAGTTAGC
1 CTCCGGGCTTCCGTTTAGCACTTATGTACTTCAACTAGA
* *
98856117 CTCCAGGCTTCCGTTTAGCACTTATGTGCTTCAACTAGA
1 CTCCGGGCTTCCGTTTAGCACTTATGTACTTCAACTAGA
* *
98856156 TTTCGGGCTTC
1 CTCCGGGCTTC
98856167 AGATCACGAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (39 bp):
CTCCGGGCTTCCGTTTAGCACTTATGTACTTCAACTAGA
Found at i:98860500 original size:165 final size:166
Alignment explanation
Indices: 98860210--98860531 Score: 601
Period size: 165 Copynumber: 1.9 Consensus size: 166
98860200 GTCTTAATAA
*
98860210 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTTTTT
1 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTTCTT
*
98860275 AATGAATGTCCATATTAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
66 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
98860340 GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
131 GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
98860376 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAG-TTCTT
1 TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTTCTT
*
98860440 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCCTCATATATGATCTAGGATAGTTTAAATG
66 AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
*
98860505 GTCACTCCAAGTAGTAAATGCATTTGT
131 GTCACGCCAAGTAGTAAATGCATTTGT
98860532 ATCATTAAAC
Statistics
Matches: 152, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
165 93 0.61
166 59 0.39
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (166 bp):
TCAATTTTCATTGAGAACAAGCAACAAATTAGTATTCTTTAAATTAAAGAATCTTTTAGTTTCTT
AATGAATGTCCATATGAATTCTCAATTAATTTTCGCATCATATATGATCTAGGATAGTTTAAATG
GTCACGCCAAGTAGTAAATGCATTTGTTGCTTGTTC
Found at i:98864106 original size:31 final size:31
Alignment explanation
Indices: 98864068--98864141 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
98864058 GATTTTTATT
* **
98864068 TTGAGTGATCAAAATAAAAGTGCCTAAAAAA
1 TTGAGTGACCAAAATAAAAACGCCTAAAAAA
*
98864099 TTGAGTGACCAAAATAAAAACGCCTATAAAA
1 TTGAGTGACCAAAATAAAAACGCCTAAAAAA
*
98864130 TTGGGTGACCAA
1 TTGAGTGACCAA
98864142 CTAAATAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.22
Consensus pattern (31 bp):
TTGAGTGACCAAAATAAAAACGCCTAAAAAA
Found at i:98868651 original size:14 final size:14
Alignment explanation
Indices: 98868629--98868662 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98868619 CTAAACAAGT
* *
98868629 CTTTAATCACATTG
1 CTTTGATCACAGTG
98868643 CTTTGATCACAGTG
1 CTTTGATCACAGTG
98868657 CTTTGA
1 CTTTGA
98868663 AGCAATGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (14 bp):
CTTTGATCACAGTG
Found at i:98873668 original size:43 final size:43
Alignment explanation
Indices: 98873560--98873719 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 43
98873550 AAAATAAACT
* * * * *
98873560 TTTAGCGGCG-TTTCTTA-AAAAAGCGCCGCTAAAAGTCATGGTCT
1 TTTAGCAGCGCTTT-TTATAAAAA-CGCCGCT-AAAGACAGGGACC
* * *
98873604 TTTAGCGGCGCTGTTTA-AAAAACGCTGCTAAAGACTA-GGACC
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGAC-AGGGACC
*
98873646 TTTAGCAGCGCTTTTTATAAAAAGGCCGCTAAAGACAGGGACC
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGACAGGGACC
98873689 TTTAGCAGCGC-TTTTATAAAAACGCCGCTAA
1 TTTAGCAGCGCTTTTTATAAAAACGCCGCTAA
98873720 TTTGCCCAGT
Statistics
Matches: 102, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 43 0.42
43 39 0.38
44 18 0.18
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
TTTAGCAGCGCTTTTTATAAAAACGCCGCTAAAGACAGGGACC
Found at i:98873719 original size:85 final size:86
Alignment explanation
Indices: 98873560--98873719 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 86
98873550 AAAATAAACT
* * * * * *
98873560 TTTAGCGGCGTTTCTTAAAAAAGCGCCGCTAAAAGTCATGGTCTTTTAGCGGCGCTGTTTAAAAA
1 TTTAGCAGCGTTTCTTAAAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTAAAAA
*
98873625 ACGCTGCTAAAGACTAGGACC
66 ACGCCGCTAAAGACTAGGACC
98873646 TTTAGCAGCGCTTT-TTATAAAAAG-GCCGCT-AAAGACAGGGACCTTTAGCAGCGCT-TTTATA
1 TTTAGCAGCG-TTTCTTA-AAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTA-A
98873707 AAAACGCCGCTAA
63 AAAACGCCGCTAA
98873720 TTTGCCCAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
84 4 0.06
85 33 0.52
86 18 0.28
87 9 0.14
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (86 bp):
TTTAGCAGCGTTTCTTAAAAAAGCGCCGCTAAAAGACAGGGACCTTTAGCAGCGCTGTTTAAAAA
ACGCCGCTAAAGACTAGGACC
Found at i:98874037 original size:21 final size:21
Alignment explanation
Indices: 98874013--98874060 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
98874003 TTCTGTTCTG
*
98874013 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCACGCTGCTGC
98874034 CTCCGCCTCCCACGCTGCTGC
1 CTCCGCCTCCCACGCTGCTGC
98874055 CTCCGC
1 CTCCGC
98874061 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.58, G:0.19, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCACGCTGCTGC
Found at i:98879607 original size:9 final size:9
Alignment explanation
Indices: 98879593--98879720 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
98879583 ATGTATTAGT
98879593 TAAGTTATG
1 TAAGTTATG
98879602 TAAGTTGTTATG
1 TAA---GTTATG
*
98879614 TACGTTATG
1 TAAGTTATG
*
98879623 TGAGTTATG
1 TAAGTTATG
*
98879632 TAAATTATG
1 TAAGTTATG
98879641 TAAGTTATG
1 TAAGTTATG
*
98879650 TGAGTTATG
1 TAAGTTATG
*
98879659 TATGTTGTTATG
1 TA---AGTTATG
*
98879671 TAAATTATG
1 TAAGTTATG
*
98879680 TAAGTTATA
1 TAAGTTATG
*
98879689 TGAGTTATG
1 TAAGTTATG
98879698 TAAGTTATG
1 TAAGTTATG
* *
98879707 TAATTTATT
1 TAAGTTATG
98879716 TAAGT
1 TAAGT
98879721 AGGATCAATA
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
9 78 0.83
12 16 0.17
ACGTcount: A:0.30, C:0.01, G:0.21, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:98879669 original size:57 final size:57
Alignment explanation
Indices: 98879595--98879707 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
98879585 GTATTAGTTA
** * *
98879595 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTG
* * *
98879652 AGTTATGTATGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGT
98879708 AATTTATTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATGTG
Found at i:98883634 original size:21 final size:21
Alignment explanation
Indices: 98883608--98883661 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
98883598 AGTTTAAGGT
*
98883608 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
98883629 TTTATGGTTTAAGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
98883650 TTTATAGTTTTA
1 TTTATGGTTTTA
98883662 AGACATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (21 bp):
TTTATGGTTTTAGATTTAGGG
Found at i:98883779 original size:15 final size:15
Alignment explanation
Indices: 98883755--98883784 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98883745 TTTAGTACTA
98883755 TTTATAGTTTAGGGT
1 TTTATAGTTTAGGGT
*
98883770 TTTATGGTTTAGGGT
1 TTTATAGTTTAGGGT
98883785 CTAATGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (15 bp):
TTTATAGTTTAGGGT
Found at i:98883822 original size:21 final size:22
Alignment explanation
Indices: 98883767--98883822 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
98883757 TATAGTTTAG
* *
98883767 GGTTTTATGGTTTAGGGTCTAA
1 GGTTTAATAGTTTAGGGTCTAA
* *
98883789 TGTTTAATA-TTTAGGGTTTAA
1 GGTTTAATAGTTTAGGGTCTAA
98883810 GGTTTAA-AGTTTA
1 GGTTTAATAGTTTA
98883823 TGATTTACGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 1 0.04
21 21 0.75
22 6 0.21
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (22 bp):
GGTTTAATAGTTTAGGGTCTAA
Found at i:98884721 original size:40 final size:40
Alignment explanation
Indices: 98884686--98884772 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
98884676 TCGCTATAGG
*
98884686 TCAATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATTC
1 TCAATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATGC
* ** *
98884726 TCGATCTTTAGCGGCGCTTTTCTAAAAACGCCGCTAATAC
1 TCAATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATGC
*
98884766 TCGATCT
1 TCAATCT
98884773 ATTCAATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (40 bp):
TCAATCTTTAGCGGCGCTTCCCTAAAAACGCCGCTAATGC
Found at i:98885495 original size:30 final size:27
Alignment explanation
Indices: 98885461--98885516 Score: 76
Period size: 30 Copynumber: 2.0 Consensus size: 27
98885451 TTATAACATA
98885461 ATGTATAAATTCACATATGATATATTAATG
1 ATGTATAAATT--CATATGAT-TATTAATG
*
98885491 ATGTATAAATTTATATGATTATTAAT
1 ATGTATAAATTCATATGATTATTAAT
98885517 AATCTAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 7 0.28
28 7 0.28
30 11 0.44
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.45
Consensus pattern (27 bp):
ATGTATAAATTCATATGATTATTAATG
Found at i:98893498 original size:25 final size:25
Alignment explanation
Indices: 98893468--98893526 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
98893458 ATTTACATCA
98893468 AAACAACATAATAAACATTTAATTT
1 AAACAACATAATAAACATTTAATTT
98893493 AAACAACATAATAAACATTTAATTT
1 AAACAACATAATAAACATTTAATTT
98893518 AAACAACAT
1 AAACAACAT
98893527 TTAAGCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.29
Consensus pattern (25 bp):
AAACAACATAATAAACATTTAATTT
Found at i:98893527 original size:16 final size:16
Alignment explanation
Indices: 98893481--98893530 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 16
98893471 CAACATAATA
98893481 AACATTTAATTTAAAC
1 AACATTTAATTTAAAC
98893497 AACA--TAA--T--A-
1 AACATTTAATTTAAAC
98893506 AACATTTAATTTAAAC
1 AACATTTAATTTAAAC
98893522 AACATTTAA
1 AACATTTAA
98893531 GCAAAACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 14
0.66 0.00 0.34
Matches are distributed among these distances:
9 4 0.15
10 1 0.04
11 3 0.11
12 1 0.04
13 1 0.04
14 3 0.11
15 1 0.04
16 13 0.48
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
AACATTTAATTTAAAC
Found at i:98893813 original size:16 final size:18
Alignment explanation
Indices: 98893794--98893826 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
98893784 CATACGAATT
98893794 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
98893810 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
98893827 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:98894457 original size:43 final size:43
Alignment explanation
Indices: 98894390--98894566 Score: 257
Period size: 43 Copynumber: 4.1 Consensus size: 43
98894380 TTTGAATTCA
* * *
98894390 TTCACCTGCATT-TCGCCTGCTAGGCTCGAAGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
*
98894432 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
* *
98894475 TTCACTGGCATTATAGCCTGCTCGGCTCGAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
** * *
98894518 TTCATAGGCATTATAGCCTGCTAGGCTTGAAGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
98894561 TTCACC
1 TTCACC
98894567 AAGTTTCATG
Statistics
Matches: 120, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 11 0.09
43 109 0.91
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATATTAT
Found at i:98901402 original size:39 final size:39
Alignment explanation
Indices: 98901359--98901655 Score: 400
Period size: 39 Copynumber: 7.6 Consensus size: 39
98901349 AATAGAAATA
* *
98901359 CGGTGATTATTCGGGCTATGTGCCTAGCGGGTTGTTTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
* *
98901398 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTGTGTAC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
*
98901437 CGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
** * *
98901476 CTATGATTATTCAGGCTATGTGCCTAGCAGGCTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
* *
98901515 CGGTGATTATACGGGCTATGTGCCTAGTAGGTTGTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
*
98901554 CGGTGATTATTTGGGGCTATGTGCCTAGCAGGCTT-TGTGC
1 CGGTGATTA-TTCGGGCTATGTGCCTAGCAGG-TTGTGTGC
* * *
98901594 CGGTGATTATTCGGGCTATGTGCCTATCAGGCTT-TATCC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGG-TTGTGTGC
* *
98901633 CGATGATTATTTGGGCTATGTGC
1 CGGTGATTATTCGGGCTATGTGC
98901656 TTAGTAGGCT
Statistics
Matches: 229, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 194 0.85
40 33 0.14
41 2 0.01
ACGTcount: A:0.15, C:0.19, G:0.32, T:0.34
Consensus pattern (39 bp):
CGGTGATTATTCGGGCTATGTGCCTAGCAGGTTGTGTGC
Found at i:98901650 original size:157 final size:156
Alignment explanation
Indices: 98901359--98901676 Score: 449
Period size: 157 Copynumber: 2.0 Consensus size: 156
98901349 AATAGAAATA
* * *
98901359 CGGTGATTATTCGGGCTATGTGCCTAGCGGGTTGTTTGCCGGTGATTATTCGGGCTATGTGCCTA
1 CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTATTCGGGCTATGTGCCTA
* * *
98901424 GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTGTGCCTATGATTATTCA
66 GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTATCCCGATGATTATTCA
*
98901489 GGCTATGTGCCTAGCAGGCTGTGTGC
131 GGCTATGTGCCTAGCAGGCTATGTGC
* *
98901515 CGGTGATTATACGGGCTATGTGCCTAGTAGGTTGTGTGCCGGTGATTATTTGGGGCTATGTGCCT
1 CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTA-TTCGGGCTATGTGCCT
* * * *
98901580 AGCAGGCTTTGTGCCGGTGATTATTCGGGCTATGTGCCTATCAGGCTT-TATCCCGATGATTATT
65 AGCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGG-TTGTATCCCGATGATTATT
** * * *
98901644 TGGGCTATGTGCTTAGTAGGCTATGTGT
129 CAGGCTATGTGCCTAGCAGGCTATGTGC
98901672 CGGTG
1 CGGTG
98901677 TATTGAAAAT
Statistics
Matches: 142, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
156 44 0.31
157 96 0.68
158 2 0.01
ACGTcount: A:0.15, C:0.18, G:0.33, T:0.35
Consensus pattern (156 bp):
CGGTGATTATACGGGCTATGTGCCTAGCAGGTTGTGTGCCGGTGATTATTCGGGCTATGTGCCTA
GCAGGCTGTGTACCGGTGATTATTCGGGCTATGTACCTAGCAGGTTGTATCCCGATGATTATTCA
GGCTATGTGCCTAGCAGGCTATGTGC
Found at i:98902832 original size:20 final size:21
Alignment explanation
Indices: 98902807--98902847 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
98902797 CCCTGCAGTT
* *
98902807 TTGAAAATTTTTCT-AGTTTC
1 TTGAAAAATTCTCTGAGTTTC
98902827 TTGAAAAATTCTCTGAGTTTC
1 TTGAAAAATTCTCTGAGTTTC
98902848 CGATTTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (21 bp):
TTGAAAAATTCTCTGAGTTTC
Found at i:98903589 original size:26 final size:26
Alignment explanation
Indices: 98903560--98903614 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
98903550 ACTCAAGGAG
*
98903560 ATAGGACTCTCTCGTAAATCAGGTAC
1 ATAGGACTCTCTCGTAAAACAGGTAC
*
98903586 ATAGGATTCTCTCGTAAAACAGGTAC
1 ATAGGACTCTCTCGTAAAACAGGTAC
98903612 ATA
1 ATA
98903615 CTTGACATCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
ATAGGACTCTCTCGTAAAACAGGTAC
Found at i:98908739 original size:27 final size:26
Alignment explanation
Indices: 98908704--98908773 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
98908694 ACTTTTACTA
* *
98908704 AAAAAATGTGCTATTAGAAGTAGACT
1 AAAAAATGTGCTATTAGAAGCAAACT
98908730 AAAAACATGT--TATTAGAAGCAAACT
1 AAAAA-ATGTGCTATTAGAAGCAAACT
98908755 -AAAAATGTGCTATTAGAAG
1 AAAAAATGTGCTATTAGAAG
98908774 ACCATAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 4 0.10
24 4 0.10
25 22 0.56
26 5 0.13
27 4 0.10
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (26 bp):
AAAAAATGTGCTATTAGAAGCAAACT
Found at i:98920364 original size:28 final size:28
Alignment explanation
Indices: 98920332--98920390 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
98920322 CATTAAAAAT
98920332 GTGTTACAAAATTGTGATACAAAATTAA
1 GTGTTACAAAATTGTGATACAAAATTAA
98920360 GTGTTACAAAATTGTGATACAAAATTAA
1 GTGTTACAAAATTGTGATACAAAATTAA
98920388 GTG
1 GTG
98920391 ACTAATTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (28 bp):
GTGTTACAAAATTGTGATACAAAATTAA
Found at i:98920391 original size:15 final size:13
Alignment explanation
Indices: 98920326--98920385 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
98920316 TTGGCACATT
* *
98920326 AAAAATGTGTTAC
1 AAAATTGTGATAC
98920339 AAAATTGTGATAC
1 AAAATTGTGATAC
*
98920352 AAAATTAAGTGTTAC
1 AAAATT--GTGATAC
98920367 AAAATTGTGATAC
1 AAAATTGTGATAC
98920380 AAAATT
1 AAAATT
98920386 AAGTGACTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
13 29 0.71
15 12 0.29
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (13 bp):
AAAATTGTGATAC
Found at i:98922165 original size:32 final size:32
Alignment explanation
Indices: 98922124--98922189 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
98922114 AAAGGGAGGG
98922124 TTGTAACCCTGATCTACTTACTTATAATATCA
1 TTGTAACCCTGATCTACTTACTTATAATATCA
* *
98922156 TTGTAACCCTGATCTTCTTACTTATAATGTCA
1 TTGTAACCCTGATCTACTTACTTATAATATCA
98922188 TT
1 TT
98922190 CTTCGTGAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.08, T:0.44
Consensus pattern (32 bp):
TTGTAACCCTGATCTACTTACTTATAATATCA
Found at i:98924500 original size:20 final size:20
Alignment explanation
Indices: 98924463--98924505 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
98924453 CAAACACCAG
98924463 AAAAGTAAATCATTTTCA-A
1 AAAAGTAAATCATTTTCAGA
98924482 AAAAGTAAATCATTTTTCAGA
1 AAAAGTAAATCA-TTTTCAGA
98924503 AAA
1 AAA
98924506 TATTCTACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 12 0.55
20 6 0.27
21 4 0.18
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAAGTAAATCATTTTCAGA
Found at i:98927931 original size:26 final size:25
Alignment explanation
Indices: 98927892--98927940 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
98927882 AATAGATAAG
* *
98927892 TTTTTTTAGGATTTGATATAAAAATA
1 TTTTTTTAAGATTT-AAATAAAAATA
*
98927918 TTTTTTTAATATTTAAATAAAAA
1 TTTTTTTAAGATTTAAATAAAAA
98927941 AACGTTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (25 bp):
TTTTTTTAAGATTTAAATAAAAATA
Found at i:98934613 original size:21 final size:21
Alignment explanation
Indices: 98934589--98934664 Score: 82
Period size: 21 Copynumber: 3.6 Consensus size: 21
98934579 ACAAACTGTT
*
98934589 ATTTTTAAAAGAAAACAGAGG
1 ATTTTCAAAAGAAAACAGAGG
* *
98934610 ATTTTCAAAAGAGAACAGTGG
1 ATTTTCAAAAGAAAACAGAGG
* * *
98934631 ATTTTCAACAGTAAATAGAGG
1 ATTTTCAAAAGAAAACAGAGG
98934652 CATTTT-AAAAGAA
1 -ATTTTCAAAAGAA
98934665 TTGACCATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
21 39 0.89
22 5 0.11
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.26
Consensus pattern (21 bp):
ATTTTCAAAAGAAAACAGAGG
Found at i:98936393 original size:16 final size:17
Alignment explanation
Indices: 98936360--98936392 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98936350 AATTTTAGGG
98936360 GCAAAAATGTAATTTTT
1 GCAAAAATGTAATTTTT
*
98936377 GCAAAAATGTGATTTT
1 GCAAAAATGTAATTTT
98936393 GAGCGGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (17 bp):
GCAAAAATGTAATTTTT
Found at i:98936750 original size:42 final size:42
Alignment explanation
Indices: 98936702--98936910 Score: 249
Period size: 42 Copynumber: 5.0 Consensus size: 42
98936692 AGTTGAGATA
*
98936702 CGTGTAAGACCATATCTGGGATATGACATAGATATAAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATAGATATGAGATTT
* * **
98936744 CGTGTAAGACCATATCTAGGATGTGGTATCA-ATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACAT-AGATATGAGATTT
* * *
98936786 CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATAGATATGAGATTT
* * *
98936828 CATGTAAGACCATATCTAGGATATGACATCGATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGACATAGATATGAGATTT
* * * * *
98936870 CGTGTAAGATCATAGCTGGGCTATTGGCATTGATATGAGAT
1 CGTGTAAGACCATATCTGGGATA-TGACATAGATATGAGAT
98936911 CTCATGCAAG
Statistics
Matches: 145, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 129 0.89
43 16 0.11
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGACATAGATATGAGATTT
Found at i:98936845 original size:84 final size:84
Alignment explanation
Indices: 98936704--98936936 Score: 297
Period size: 84 Copynumber: 2.8 Consensus size: 84
98936694 TTGAGATACG
* * * *
98936704 TGTAAGACCATATCTGGGATATGACATAGATATAAGATTTCGTGTAAGACCATATCTAGGATGTG
1 TGTAAGACCATATCTGGGATATGGCATAGATATGAGATTTCATGTAAGACCATATCTAGGATATG
**
98936769 GTATCAATATGAGATTTCA
66 ACATCAATATGAGATTTCA
*
98936788 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCATGTAAGACCATATCTAGGATATG
1 TGTAAGACCATATCTGGGATATGGCATAGATATGAGATTTCATGTAAGACCATATCTAGGATATG
* *
98936853 ACATCGATATGAGATTTCG
66 ACATCAATATGAGATTTCA
* * * * * * **
98936872 TGTAAGATCATAGCTGGGCTATTGGCATTGATATGAGATCTCATGCAAGAAAATATCTAGG-TAT
1 TGTAAGACCATATCTGGGATA-TGGCATAGATATGAGATTTCATGTAAGACCATATCTAGGATAT
98936936 G
65 G
98936937 GCATTGGTAT
Statistics
Matches: 131, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
84 97 0.74
85 34 0.26
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (84 bp):
TGTAAGACCATATCTGGGATATGGCATAGATATGAGATTTCATGTAAGACCATATCTAGGATATG
ACATCAATATGAGATTTCA
Found at i:98936937 original size:126 final size:126
Alignment explanation
Indices: 98936704--98936940 Score: 316
Period size: 126 Copynumber: 1.9 Consensus size: 126
98936694 TTGAGATACG
* *
98936704 TGTAAGACCATATCTGGGATATGACATAGATATAAGATTTCGTGTAAGACCATATCTAGGATGTG
1 TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGGATGTG
* * * ** *
98936769 GTATCAATATGAGATTTCATGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
66 GCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCATCGATATGAGATTTCA
* * * *
98936830 TGTAAGACCATATCTAGGATATGACATCGATATGAGATTTCGTGTAAGATCATAGCTGGGCTAT-
1 TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGG--ATG
**
98936894 TGGCATTGATATGAGATCTCATGCAAGAAAATATCTAGG-TATGGCAT
64 TGGCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCAT
98936941 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
126 62 0.65
127 31 0.33
128 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (126 bp):
TGTAAGACCATATCTAGGATATGACATAGATATAAGATTTCGTGTAAGACCATAGCTAGGATGTG
GCATCAATATGAGATCTCATGCAAGAAAATATCTAGGATATGGCATCGATATGAGATTTCA
Found at i:98939391 original size:21 final size:23
Alignment explanation
Indices: 98939351--98939397 Score: 71
Period size: 21 Copynumber: 2.1 Consensus size: 23
98939341 CAACCCAATT
98939351 TTATTTATATTTATACTTATTTTC
1 TTATTTATATTTATA-TTATTTTC
98939375 TTATTTAT-TTTAT-TTATTTTC
1 TTATTTATATTTATATTATTTTC
98939396 TT
1 TT
98939398 TCATGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.43
23 5 0.22
24 8 0.35
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTATTTATATTTATATTATTTTC
Found at i:98940379 original size:8 final size:8
Alignment explanation
Indices: 98940366--98940392 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
98940356 TTTAAGCATT
98940366 AAAAAATA
1 AAAAAATA
98940374 AAAAAATA
1 AAAAAATA
98940382 AAAAAATA
1 AAAAAATA
98940390 AAA
1 AAA
98940393 CAAAGGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:98942611 original size:367 final size:366
Alignment explanation
Indices: 98941938--98942679 Score: 1466
Period size: 367 Copynumber: 2.0 Consensus size: 366
98941928 GGGATAGGTT
98941938 AATTTTGTTGTTTCAATGACACACCAGATACATATATAAAATATATCAAAATTTGTTAAGTATGG
1 AATTTTGTTGTTTCAATGACACACCAGATACATATATAAAATATATCAAAATTTGTTAAGTATGG
98942003 TAATGACATATTCTTTTTATTTTAATCATAATCTTTTATTAAAATGCTTAAAATCATATTTTTTT
66 TAATGACATATTCTTTTTATTTTAATCATAATCTTTTATTAAAATGCTTAAAATCATATTTTTTT
98942068 TATTCGAGTTCAATTTACTCAAACGTTTAGTTCTAGATAAATACTTAATTTTAAATTAAATAATT
131 TATTCGAGTTCAATTTACTCAAACGTTTAGTTCTAGATAAATACTTAATTTTAAATTAAATAATT
98942133 GATATTATATTTCTCTAATATATTAAATTAATATTAATTATTATTATATTAAGGAATAATCATTA
196 GATATTATATTTCTCTAATATATTAAATTAATATTAATTATTATTATATTAAGGAATAATCATTA
98942198 GTGATTTATAACAAAAATTTTATTAAAAAAACTTATAAATTTATTTTGTTTCATTATATTACAAT
261 GTGATTTATAACAAAAATTTTATTAAAAAAACTTATAAATTTATTTTGTTTCATTATATTACAAT
98942263 TTATTTATACATTAATATAAGGGTAAACTACAAAAATAGCC
326 TTATTTATACATTAATATAAGGGTAAACTACAAAAATAGCC
98942304 AAATTTTGTTGTTTCAATGACACACCAGATACATATATAAAATATATCAAAATTTGTTAAGTATG
1 -AATTTTGTTGTTTCAATGACACACCAGATACATATATAAAATATATCAAAATTTGTTAAGTATG
98942369 GTAATGACATATTCTTTTTATTTTAATCATAATCTTTTATTAAAATGCTTAAAATCATATTTTTT
65 GTAATGACATATTCTTTTTATTTTAATCATAATCTTTTATTAAAATGCTTAAAATCATATTTTTT
98942434 TTATTCGAGTTCAATTTACTCAAACGTTTAGTTCTAGATAAATACTTAATTTTAAATTAAATAAT
130 TTATTCGAGTTCAATTTACTCAAACGTTTAGTTCTAGATAAATACTTAATTTTAAATTAAATAAT
98942499 TGATATTATATTTCTCTAATATATTAAATTAATATTAATTATTATTATATTAAGGAATAATCATT
195 TGATATTATATTTCTCTAATATATTAAATTAATATTAATTATTATTATATTAAGGAATAATCATT
98942564 AGTGATTTATAACAAAAATTTTATTAAAAAAACTTATAAATTTATTTTGTTTCATTATATTACAA
260 AGTGATTTATAACAAAAATTTTATTAAAAAAACTTATAAATTTATTTTGTTTCATTATATTACAA
98942629 TTTATTTATACATTAATATAAGGGTAAACTACAAAAATAGCC
325 TTTATTTATACATTAATATAAGGGTAAACTACAAAAATAGCC
*
98942671 ACTTTTGTT
1 AATTTTGTT
98942680 TGCCTCAAGT
Statistics
Matches: 374, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
366 8 0.02
367 366 0.98
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (366 bp):
AATTTTGTTGTTTCAATGACACACCAGATACATATATAAAATATATCAAAATTTGTTAAGTATGG
TAATGACATATTCTTTTTATTTTAATCATAATCTTTTATTAAAATGCTTAAAATCATATTTTTTT
TATTCGAGTTCAATTTACTCAAACGTTTAGTTCTAGATAAATACTTAATTTTAAATTAAATAATT
GATATTATATTTCTCTAATATATTAAATTAATATTAATTATTATTATATTAAGGAATAATCATTA
GTGATTTATAACAAAAATTTTATTAAAAAAACTTATAAATTTATTTTGTTTCATTATATTACAAT
TTATTTATACATTAATATAAGGGTAAACTACAAAAATAGCC
Found at i:98943217 original size:29 final size:29
Alignment explanation
Indices: 98943156--98943217 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
98943146 ACATGTTAAC
** *
98943156 ATAAGTGACTAAAACATAACATTTCAAAC
1 ATAAGTGACTAAAACATAACATGACAAAA
* * *
98943185 ATAAGTGACTAAAATATAACCTGAGAAAA
1 ATAAGTGACTAAAACATAACATGACAAAA
98943214 ATAA
1 ATAA
98943218 AATTGACTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.55, C:0.13, G:0.10, T:0.23
Consensus pattern (29 bp):
ATAAGTGACTAAAACATAACATGACAAAA
Found at i:98943946 original size:43 final size:43
Alignment explanation
Indices: 98943871--98944094 Score: 220
Period size: 43 Copynumber: 5.2 Consensus size: 43
98943861 TCTTTATAGG
* *
98943871 CGATGATGCACT-TATGTG-CAAGTATATTTGCTTCGGTTTATT
1 CGATGATGCACTATGTGTGCCAA-TATAATTGCTTCGGTTTATT
* * *
98943913 CGATGATGCACTACGTGTGCCAATATAATTGCTTCAGTTCATT
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* * * * * *
98943956 TGATGATGCACTATGTGTGCCAGTATAATTGTTTTGGCTTGTT
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* ** * *
98943999 TGATGATGCACTATGTGTGCCAATATAATTGCTTCGACTTGTC
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
* * * * *
98944042 CAATGATGCACTATGTGTGCCACTATATTTCCTTTGGTTTA-T
1 CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
98944084 CTGATGATGCA
1 C-GATGATGCA
98944095 TTGTGGTGCT
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
42 13 0.09
43 133 0.89
44 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (43 bp):
CGATGATGCACTATGTGTGCCAATATAATTGCTTCGGTTTATT
Found at i:98943982 original size:86 final size:86
Alignment explanation
Indices: 98943871--98944094 Score: 265
Period size: 86 Copynumber: 2.6 Consensus size: 86
98943861 TCTTTATAGG
* * *
98943871 CGATGATGCACT-TATGTGCAAGTATATTTGCTTCGGTTTATTCGATGATGCACTACGTGTGCCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
* *
98943935 ATATAATTGCTTC-AGTTCATT
66 ATATAATTGCTTCGACTT-ATC
* * * * * * *
98943956 TGATGATGCACTATGTGTGCCAGTATAATTGTTTTGGCTTGTTTGATGATGCACTATGTGTGCCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
*
98944021 ATATAATTGCTTCGACTTGTC
66 ATATAATTGCTTCGACTTATC
* * *
98944042 CAATGATGCACTATGTGTGCCACTATATTTCCTTTGGTTTA-TCTGATGATGCA
1 CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTC-GATGATGCA
98944095 TTGTGGTGCT
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
85 12 0.11
86 99 0.87
87 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (86 bp):
CGATGATGCACTATGTGTGCCAGTATATTTGCTTTGGTTTATTCGATGATGCACTACGTGTGCCA
ATATAATTGCTTCGACTTATC
Found at i:98956338 original size:15 final size:15
Alignment explanation
Indices: 98956318--98956348 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98956308 TGAATCATTA
98956318 AAAGTATAAGTTGCC
1 AAAGTATAAGTTGCC
98956333 AAAGTATAAGTTGCC
1 AAAGTATAAGTTGCC
98956348 A
1 A
98956349 GGAATTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (15 bp):
AAAGTATAAGTTGCC
Found at i:98967432 original size:21 final size:22
Alignment explanation
Indices: 98967389--98967432 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
98967379 TTTTAAACCC
* *
98967389 ATATGGTGTGTAGGGATGGTGGG
1 ATATGGTGTGTAGAGA-GATGGG
98967412 ATATGGTGTGTAGAGA-ATGGG
1 ATATGGTGTGTAGAGAGATGGG
98967433 GGTAGAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
23 15 0.79
ACGTcount: A:0.23, C:0.00, G:0.48, T:0.30
Consensus pattern (22 bp):
ATATGGTGTGTAGAGAGATGGG
Found at i:98976243 original size:124 final size:124
Alignment explanation
Indices: 98976045--98976294 Score: 482
Period size: 124 Copynumber: 2.0 Consensus size: 124
98976035 TCTAAAAAGC
98976045 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
1 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
*
98976110 TTCAGAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
66 TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
98976169 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
1 ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
*
98976234 TTCAAAAAATACTTGAGAATAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
66 TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
98976293 AT
1 AT
98976295 TTAATGTATC
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.53, C:0.11, G:0.12, T:0.25
Consensus pattern (124 bp):
ATGAAAACGCAATAAAAACTAACATATAAAATAAATTATAAGAATTGTAAAAAGTATTAAAAAGA
TTCAAAAAATACTTGAGAACAAGCTCTTTAAGGAAAATCACCAAGCCTTAAAGAGTTTA
Found at i:98977143 original size:28 final size:28
Alignment explanation
Indices: 98977083--98977136 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
98977073 AATCCCTATT
* *
98977083 TTATTTAAAAATGTAAATTTCATTAAAA
1 TTATTTAAAAATATAAATTTAATTAAAA
98977111 TTATTTAAAAATATAAATTTAATTAA
1 TTATTTAAAAATATAAATTTAATTAA
98977137 TGATATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
TTATTTAAAAATATAAATTTAATTAAAA
Found at i:98978922 original size:43 final size:43
Alignment explanation
Indices: 98978815--98978938 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 43
98978805 TTGTGCGAAA
* ** *
98978815 AAACACTGCTATAGAACATGATCTTTAGCGGCTCTTTCCCTAT
1 AAACACTGCTATAGAACATGATCTTTAGCGGCGCTTTTACTAC
* * *
98978858 AAACACCGCTATAGAATATGATCTTTAGCGGCGCTTTTAGTAC
1 AAACACTGCTATAGAACATGATCTTTAGCGGCGCTTTTACTAC
** * * **
98978901 AAATTCTGCTAAAGAACATGATTTTTAGCTACGCTTTT
1 AAACACTGCTATAGAACATGATCTTTAGCGGCGCTTTT
98978939 TTGACAGACG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (43 bp):
AAACACTGCTATAGAACATGATCTTTAGCGGCGCTTTTACTAC
Found at i:98982362 original size:40 final size:40
Alignment explanation
Indices: 98982277--98982366 Score: 112
Period size: 40 Copynumber: 2.2 Consensus size: 40
98982267 GATTATGTTT
*
98982277 GGCACTAAGTATGCGATTTGAAATAGCTTCGGCTAAAAATA
1 GGCACTAAGTATGCGAATTGAAATAGCTTCGGCT-AAAATA
* * *
98982318 -GCACTAAGTTTGCGAATTGCAATAGCTTCGGCT-ATATGA
1 GGCACTAAGTATGCGAATTGAAATAGCTTCGGCTAAAAT-A
98982357 GGCACTAAGT
1 GGCACTAAGT
98982367 GTGTGATACT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
38 3 0.07
39 1 0.02
40 39 0.91
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTATGCGAATTGAAATAGCTTCGGCTAAAATA
Found at i:98989854 original size:40 final size:40
Alignment explanation
Indices: 98989789--98989884 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 40
98989779 TATTATGATC
*
98989789 GGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTAAAAAT-A
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCT--AAATGA
* *
98989830 -GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATGA
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTAAATGA
98989869 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
98989885 TACCGAGATA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
38 3 0.06
39 1 0.02
40 46 0.92
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTAAATGA
Found at i:98993529 original size:13 final size:13
Alignment explanation
Indices: 98993513--98993538 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98993503 ATATGTTTTA
98993513 TGATTGTTTTGGT
1 TGATTGTTTTGGT
98993526 TGATTGTTTTGGT
1 TGATTGTTTTGGT
98993539 ATGGGTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:98997958 original size:29 final size:29
Alignment explanation
Indices: 98997916--98997972 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
98997906 TTATGGAAGA
* *
98997916 GGTGGAGAACTTGTTCGTTGAGAGTTCGC
1 GGTGAAGAACTTGTTCGTTGAGAATTCGC
98997945 GGTGAAGAACTTGTTCGTTGAGAATTCG
1 GGTGAAGAACTTGTTCGTTGAGAATTCG
98997973 TGTCAAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.12, G:0.35, T:0.32
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAATTCGC
Found at i:98999015 original size:29 final size:28
Alignment explanation
Indices: 98998976--98999061 Score: 145
Period size: 28 Copynumber: 3.0 Consensus size: 28
98998966 CACTTTGTGC
98998976 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
98999005 TATTCTGGTGTGTTTTGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
98999033 GATACTGGTGTGTTTTGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
98999061 T
1 T
98999062 GGTGTGTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 35 0.65
29 19 0.35
ACGTcount: A:0.19, C:0.03, G:0.29, T:0.49
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:98999029 original size:23 final size:24
Alignment explanation
Indices: 98998979--98999073 Score: 102
Period size: 28 Copynumber: 3.6 Consensus size: 24
98998969 TTTGTGCTAT
98998979 TCTGGTGTGTTTTGGATGGATTATATTA
1 TCTGGTGTGTTTTGGA-GGA-T-TA-TA
98999007 TTCTGGTGTGTTTTGGAGGATTATATGA
1 -TCTGGTGTGTTTTGGAGGA-T-TAT-A
98999035 TACTGGTGTGTTTTGGAGGATTATA
1 T-CTGGTGTGTTTTGGAGGATTATA
98999060 T-TGGTGTGTTTTGG
1 TCTGGTGTGTTTTGG
98999074 TTGGACATTT
Statistics
Matches: 64, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
23 13 0.20
25 2 0.03
26 3 0.05
27 3 0.05
28 27 0.42
29 16 0.25
ACGTcount: A:0.16, C:0.03, G:0.33, T:0.48
Consensus pattern (24 bp):
TCTGGTGTGTTTTGGAGGATTATA
Found at i:98999086 original size:23 final size:23
Alignment explanation
Indices: 98999010--98999093 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 23
98999000 TATATTATTC
*
98999010 TGGTGTGTTTTGGAGGATTATATGAT
1 TGGTGTGTTTTGGAGGA-T-CAT-AT
*
98999036 ACTGGTGTGTTTTGGAGGATTATAT
1 --TGGTGTGTTTTGGAGGATCATAT
* *
98999061 TGGTGTGTTTTGGTTGGA-CATTT
1 TGGTGTGTTTTGG-AGGATCATAT
98999084 TGGTGTGTTT
1 TGGTGTGTTT
98999094 GGATGGAATC
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
23 26 0.50
24 3 0.06
25 2 0.04
26 3 0.06
27 1 0.02
28 17 0.33
ACGTcount: A:0.14, C:0.02, G:0.35, T:0.49
Consensus pattern (23 bp):
TGGTGTGTTTTGGAGGATCATAT
Found at i:98999300 original size:22 final size:23
Alignment explanation
Indices: 98999264--98999308 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
98999254 GCTTTACTGA
*
98999264 TCAGGCGCTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
*
98999287 TCAGGCAC-TTATGTTTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
98999309 CTAATCAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:99003065 original size:26 final size:26
Alignment explanation
Indices: 99003034--99003141 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
99003024 TGAAATGCCC
*
99003034 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
99003060 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
99003086 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
99003112 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
99003138 ATCA
1 ATCA
99003142 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:99010053 original size:22 final size:22
Alignment explanation
Indices: 99010028--99010070 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
99010018 GTAATTAAAA
99010028 CAATTGTATTTGGCTTACTAAC
1 CAATTGTATTTGGCTTACTAAC
99010050 CAATTGTATTTGGCTTACTAA
1 CAATTGTATTTGGCTTACTAA
99010071 GCTCTTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (22 bp):
CAATTGTATTTGGCTTACTAAC
Found at i:99015822 original size:27 final size:27
Alignment explanation
Indices: 99015791--99015963 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
99015781 CCCCAAAATA
*
99015791 GGTAAAATGACTGTAATGCCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* * * *
99015818 AGTAAAATAACCGTAATACCCCTATAG
1 GGTAAAATGACTGTAATACCCCTGTAG
**
99015845 GGTAAAATGACTGTAACGCCCCTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
* *
99015872 GGTAAAATGA-TCGTAATGCCCTTGTAG
1 GGTAAAATGACT-GTAATACCCCTGTAG
** * *
99015899 GGTAAAATGACCATAAAACCCTTGTAG
1 GGTAAAATGACTGTAATACCCCTGTAG
*
99015926 GGTAAAATGA-TCGTTATACCCCTGTAG
1 GGTAAAATGACT-GTAATACCCCTGTAG
99015953 GGTAAAATGAC
1 GGTAAAATGAC
99015964 GATTATGCCC
Statistics
Matches: 120, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 119 0.99
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAG
Found at i:99015927 original size:81 final size:80
Alignment explanation
Indices: 99015791--99015975 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 80
99015781 CCCCAAAATA
* * *
99015791 GGTAAAATGACTGTAATGCCCCTGTAGAGTAAAATAACCGTAATACCCCTATAGGGTAAAATGA-
1 GGTAAAATGAC-GTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGAT
*
99015855 CTGTAACGCCCCTGTAG
65 C-GTAACACCCCTGTAG
* * * *
99015872 GGTAAAATGATCGTAATGCCCTTGTAGGGTAAAATGACCATAAAACCCTTGTAGGGTAAAATGAT
1 GGTAAAATGA-CGTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGAT
* *
99015937 CGTTATACCCCTGTAG
65 CGTAACACCCCTGTAG
*
99015953 GGTAAAATGACGATTATGCCCTT
1 GGTAAAATGACG-TAATGCCCTT
99015976 ATGTTCCGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
80 2 0.02
81 86 0.96
82 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (80 bp):
GGTAAAATGACGTAATGCCCTTGTAGAGTAAAATAACCATAAAACCCCTATAGGGTAAAATGATC
GTAACACCCCTGTAG
Found at i:99015975 original size:54 final size:54
Alignment explanation
Indices: 99015791--99015963 Score: 229
Period size: 54 Copynumber: 3.2 Consensus size: 54
99015781 CCCCAAAATA
* * * *
99015791 GGTAAAATGACTGTAATGCCCCTGTAGAGTAAAATAACCGTAATACCCCTATAG
1 GGTAAAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
* * *
99015845 GGTAAAATGACTGTAACGCCCCTGTAGGGTAAAATGATCGTAATGCCCTTGTAG
1 GGTAAAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
** ** * *
99015899 GGTAAAATGACCATAAAACCCTTGTAGGGTAAAATGATCGTTATACCCCTGTAG
1 GGTAAAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
99015953 GGTAAAATGAC
1 GGTAAAATGAC
99015964 GATTATGCCC
Statistics
Matches: 104, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 104 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (54 bp):
GGTAAAATGACTGTAATGCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAG
Found at i:99016389 original size:28 final size:28
Alignment explanation
Indices: 99016343--99016407 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
99016333 ATTACACTGT
**
99016343 ACTGATACTGCATTAGGCTTGGGCCCAC
1 ACTGATACTGCATTAGGCTAAGGCCCAC
* *
99016371 ACTGCTACTGCA-TAGGGCTAAGGCCCAG
1 ACTGATACTGCATTA-GGCTAAGGCCCAC
*
99016399 ACTGTTACT
1 ACTGATACT
99016408 AACCTGGGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (28 bp):
ACTGATACTGCATTAGGCTAAGGCCCAC
Found at i:99019180 original size:48 final size:48
Alignment explanation
Indices: 99019104--99019242 Score: 192
Period size: 48 Copynumber: 2.9 Consensus size: 48
99019094 TACCACGGTT
* *
99019104 ATACGTGTAACATGGTGCTAAGTGGATATACCA-AGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAG-TTACACATATTG
* *
99019152 ATACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTG
* * *
99019200 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACAT
99019243 GTAACGTGGT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
47 33 0.41
48 46 0.57
49 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACAGTTACACATATTG
Found at i:99019257 original size:38 final size:38
Alignment explanation
Indices: 99019206--99019282 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
99019196 ATTGATTCAT
99019206 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
99019244 TAACGTGGTGCTAAGTGGATTTGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
99019282 T
1 T
99019283 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:99027616 original size:41 final size:40
Alignment explanation
Indices: 99027565--99027662 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 40
99027555 AACTATTGTA
* * *
99027565 ATCTCTCACACTTAGTGCCTTTCATAGTCGAAGCTGTCAC
1 ATCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
* *
99027605 AGTCTCACACACTAAGTGCTTTTCATAGTCGAAGCTATCTC
1 A-TCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
*
99027646 ATCTCGCACACTAAGTG
1 ATCTCACACACTAAGTG
99027663 TCATATGTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
40 16 0.31
41 35 0.69
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (40 bp):
ATCTCACACACTAAGTGCCTTTCATAGTCGAAGCTATCAC
Found at i:99027678 original size:40 final size:39
Alignment explanation
Indices: 99027612--99027725 Score: 124
Period size: 40 Copynumber: 2.9 Consensus size: 39
99027602 CACAGTCTCA
* *
99027612 CACACTAAGTGCT-TTTCATAGTCGAAGCTATCTCATCTCG
1 CACACTAAGTGCTATAT-ATAGCCGAAGCTATCTCAT-TCG
* *
99027652 CACACTAAGTG-TCATATGTAGCCGAAGCTATTCTGATTCG
1 CACACTAAGTGCT-ATATATAGCCGAAGCTA-TCTCATTCG
* *
99027692 CACACTAAGTGCTTTATATAGCTGAAGCTATCTC
1 CACACTAAGTGCTATATATAGCCGAAGCTATCTC
99027726 GATACACTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
39 4 0.06
40 50 0.81
41 8 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.32
Consensus pattern (39 bp):
CACACTAAGTGCTATATATAGCCGAAGCTATCTCATTCG
Done.