Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 31 of 356
Found at i:10515393 original size:17 final size:17
Alignment explanation
Indices: 10515373--10515405 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10515363 AAAATATAAT
10515373 AATAATAATAATAATAC
1 AATAATAATAATAATAC
*
10515390 AATAGTAATAATAATA
1 AATAATAATAATAATA
10515406 AAAAGGTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (17 bp):
AATAATAATAATAATAC
Found at i:10515393 original size:20 final size:20
Alignment explanation
Indices: 10515365--10515406 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
10515355 AAAAAAAGAA
*
10515365 AATATAATAATAATAATAAT
1 AATACAATAATAATAATAAT
*
10515385 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
10515405 AA
1 AA
10515407 AAAGGTATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:10515600 original size:58 final size:58
Alignment explanation
Indices: 10515535--10515654 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
10515525 TAGTATATGT
*
10515535 TAATAACAATAATAATATATAAAAATA-G-GAAATAATAATATGGT-AAAAATAATAATAA
1 TAATAACAAAAATAATA-ATAAAAATATGTGAAATAATAAT-T-GTAAAAAATAATAATAA
* * * *
10515593 TAATAACAAAAATAGTAATAATAGTATGTGAAATAATAATTGTAAAAAATAATAGTAA
1 TAATAACAAAAATAATAATAAAAATATGTGAAATAATAATTGTAAAAAATAATAATAA
10515651 TAAT
1 TAAT
10515655 TATATTGATA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
57 9 0.17
58 34 0.63
59 11 0.20
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (58 bp):
TAATAACAAAAATAATAATAAAAATATGTGAAATAATAATTGTAAAAAATAATAATAA
Found at i:10515748 original size:34 final size:32
Alignment explanation
Indices: 10515670--10515776 Score: 85
Period size: 34 Copynumber: 3.2 Consensus size: 32
10515660 TGATAATACT
*
10515670 AATAATAATAGTAGTAAAAAAATAAAAAAAATAA
1 AATAATAATAATAGT--AAAAATAAAAAAAATAA
* * *
10515704 AAAAAAAATAATAGTAAAAATGACAATAAAATAA
1 AATAATAATAATAGTAAAAAT-A-AAAAAAATAA
*
10515738 GATAATAATAAT-GATAAAAA-AATAAAAAA-AA
1 AATAATAATAATAG-TAAAAATAA-AAAAAATAA
*
10515769 AGTAATAA
1 AATAATAA
10515777 CGGCAATAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
31 9 0.15
32 12 0.20
33 2 0.03
34 36 0.61
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.20
Consensus pattern (32 bp):
AATAATAATAATAGTAAAAATAAAAAAAATAA
Found at i:10515870 original size:41 final size:41
Alignment explanation
Indices: 10515825--10515910 Score: 113
Period size: 41 Copynumber: 2.1 Consensus size: 41
10515815 ATAACATGTA
*
10515825 AATAATAATAACAATAATAACAA-TAA-TATATTTATAATAAT
1 AATAATAATAAAAATAATAA-AATTAACT-TATTTATAATAAT
* *
10515866 AATAATAGTAAAAATAATAAAATTAACTTTTTTATAATAAT
1 AATAATAATAAAAATAATAAAATTAACTTATTTATAATAAT
10515907 AATA
1 AATA
10515911 TATTTATAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
40 2 0.05
41 37 0.93
42 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (41 bp):
AATAATAATAAAAATAATAAAATTAACTTATTTATAATAAT
Found at i:10515938 original size:17 final size:16
Alignment explanation
Indices: 10515896--10515938 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 16
10515886 AATTAACTTT
10515896 TTTATAATAATAATATA
1 TTTATAA-AATAATATA
10515913 TTTAT--AATAATATA
1 TTTATAAAATAATATA
10515927 TTTATAAGAATA
1 TTTATAA-AATA
10515939 TTTAAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 14 0.61
17 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
TTTATAAAATAATATA
Found at i:10515942 original size:12 final size:14
Alignment explanation
Indices: 10515902--10515939 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
10515892 CTTTTTTATA
10515902 ATAATAATATATTT
1 ATAATAATATATTT
10515916 ATAATAATATATTT
1 ATAATAATATATTT
*
10515930 ATAAGAATAT
1 ATAATAATAT
10515940 TTAAAAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATAATAATATATTT
Found at i:10518178 original size:20 final size:20
Alignment explanation
Indices: 10518153--10518196 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
10518143 TATACATGTC
* * *
10518153 AATTCTGCTCTAAATCTAAA
1 AATTCTACTCGAAATCAAAA
10518173 AATTCTACTCGAAATCAAAA
1 AATTCTACTCGAAATCAAAA
10518193 AATT
1 AATT
10518197 TCACCCGCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (20 bp):
AATTCTACTCGAAATCAAAA
Found at i:10519895 original size:47 final size:46
Alignment explanation
Indices: 10519823--10519921 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 46
10519813 ATTATTTTTA
* * * * *
10519823 TATTTAAATTAATTGTCATGTTAGAATGTTATTTCTTTTGAATTGAT
1 TATTTAAATCAATTGCCATATTAGAA-ATTATTTCTTTTGAATTAAT
* * *
10519870 TGTTTAAATCGATTGCCATATTAGAAATTATTTTTTTTGAATTAAT
1 TATTTAAATCAATTGCCATATTAGAAATTATTTCTTTTGAATTAAT
10519916 TATTTA
1 TATTTA
10519922 TATGTTTAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
46 22 0.51
47 21 0.49
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.53
Consensus pattern (46 bp):
TATTTAAATCAATTGCCATATTAGAAATTATTTCTTTTGAATTAAT
Found at i:10533300 original size:73 final size:73
Alignment explanation
Indices: 10533181--10533366 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
10533171 TATTATTATT
* *
10533181 TGGATGTAATTATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10533246 ATTTTAAG
66 ATTTTAAG
10533254 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10533319 ATTTTAAG
66 ATTTTAAG
10533327 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
10533367 GTCAAGTTGT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:10537725 original size:73 final size:73
Alignment explanation
Indices: 10537606--10537791 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
10537596 TATTATTATT
* *
10537606 TGGATGTAATGATGTAACGTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10537671 ATTTTAAG
66 ATTTTAAG
10537679 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
10537744 ATTTTAAG
66 ATTTTAAG
10537752 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
10537792 GTCAAGTTGT
Statistics
Matches: 111, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 111 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.40
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:10550047 original size:9 final size:9
Alignment explanation
Indices: 10550026--10550089 Score: 56
Period size: 9 Copynumber: 6.7 Consensus size: 9
10550016 GAAGTAATAC
10550026 AAAATTAATT
1 AAAATT-ATT
10550036 AAAATTATT
1 AAAATTATT
*
10550045 AAAATTATAA
1 AAAATTAT-T
*
10550055 AAAATTATC
1 AAAATTATT
*
10550064 AAAGTTATT
1 AAAATTATT
*
10550073 ATAAATTTATA
1 A-AAA-TTATT
10550084 AAAATT
1 AAAATT
10550090 TATAAAGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
9 21 0.47
10 19 0.42
11 5 0.11
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (9 bp):
AAAATTATT
Found at i:10550058 original size:19 final size:19
Alignment explanation
Indices: 10550036--10550095 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
10550026 AAAATTAATT
*
10550036 AAAATTATTAAAATTATAA
1 AAAATTATAAAAATTATAA
* * *
10550055 AAAATTATCAAAGTTATTAT
1 AAAATTATAAAAATTA-TAA
*
10550075 AAATTTATAAAAATTTATAA
1 AAAATTATAAAAA-TTATAA
10550095 A
1 A
10550096 GGAAAAGTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 14 0.44
20 15 0.47
21 3 0.09
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTATAAAAATTATAA
Found at i:10550572 original size:8 final size:9
Alignment explanation
Indices: 10550550--10550618 Score: 52
Period size: 10 Copynumber: 7.3 Consensus size: 9
10550540 CATGTCAATA
10550550 AATTTTATAT
1 AATTTT-TAT
10550560 AATTTTT-T
1 AATTTTTAT
10550568 AATTTTTAT
1 AATTTTTAT
* *
10550577 AATCATTCAT
1 AAT-TTTTAT
10550587 -ATTTTTAT
1 AATTTTTAT
*
10550595 AATATATTGAT
1 AAT-T-TTTAT
10550606 AATATTTTAT
1 AAT-TTTTAT
10550616 AAT
1 AAT
10550619 ATCTAACGCA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
8 12 0.25
9 9 0.19
10 18 0.38
11 9 0.19
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (9 bp):
AATTTTTAT
Found at i:10556913 original size:10 final size:10
Alignment explanation
Indices: 10556898--10556944 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
10556888 TAGACATATT
10556898 TTTATTTTTA
1 TTTATTTTTA
10556908 TTTATTTTTA
1 TTTATTTTTA
*
10556918 TGGT-TTTTTA
1 T-TTATTTTTA
10556928 -TTATTTTTA
1 TTTATTTTTA
*
10556937 TATATTTT
1 TTTATTTT
10556945 GTGATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
8 1 0.03
9 6 0.19
10 23 0.74
11 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:10556934 original size:9 final size:9
Alignment explanation
Indices: 10556899--10556964 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
10556889 AGACATATTT
10556899 TTATTTTTA
1 TTATTTTTA
10556908 TTTATTTTTA
1 -TTATTTTTA
10556918 TGGT-TTTTTA
1 T--TATTTTTA
10556928 TTATTTTTA
1 TTATTTTTA
*
10556937 -TATATTTTG
1 TTAT-TTTTA
*
10556946 TGATTTTTA
1 TTATTTTTA
*
10556955 TCATTTTTA
1 TTATTTTTA
10556964 T
1 T
10556965 AATAATTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
8 4 0.09
9 24 0.51
10 18 0.38
11 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.73
Consensus pattern (9 bp):
TTATTTTTA
Found at i:10556944 original size:19 final size:21
Alignment explanation
Indices: 10556900--10556944 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
10556890 GACATATTTT
*
10556900 TATTTTTATTTATTTTTATGG
1 TATTTTTATTTATTTTTATGA
10556921 T-TTTTTA-TTATTTTTAT-A
1 TATTTTTATTTATTTTTATGA
10556939 TATTTT
1 TATTTT
10556945 GTGATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 6 0.27
21 1 0.05
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (21 bp):
TATTTTTATTTATTTTTATGA
Found at i:10556953 original size:29 final size:26
Alignment explanation
Indices: 10556899--10556975 Score: 66
Period size: 29 Copynumber: 2.7 Consensus size: 26
10556889 AGACATATTT
*
10556899 TTATTTTTATTTATTTTTATGGTTTTTTA
1 TTATTTTTATATATTTTTA--G-TTTTTA
10556928 TTATTTTTATATATTTTGT-GATTTTTA
1 TTATTTTTATATATTTT-TAG-TTTTTA
*
10556955 TCATTTTTATAATAATTTTTA
1 TTATTTTTAT-AT-ATTTTTA
10556976 ACAACGTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
27 16 0.39
28 3 0.07
29 21 0.51
30 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.05, T:0.70
Consensus pattern (26 bp):
TTATTTTTATATATTTTTAGTTTTTA
Found at i:10558799 original size:37 final size:37
Alignment explanation
Indices: 10558757--10558827 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
10558747 TTTAAATAAC
*
10558757 AAGTATATGGTTATTTGATAAGTGAACGGAAATGAAT
1 AAGTATATGGTTATTTGATAAGTGAACGAAAATGAAT
* * *
10558794 AAGTATATGGTTGTTTGATATGTGTACGAAAATG
1 AAGTATATGGTTATTTGATAAGTGAACGAAAATG
10558828 TTAAAAAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.35
Consensus pattern (37 bp):
AAGTATATGGTTATTTGATAAGTGAACGAAAATGAAT
Found at i:10560700 original size:46 final size:45
Alignment explanation
Indices: 10560551--10560766 Score: 147
Period size: 46 Copynumber: 4.6 Consensus size: 45
10560541 ATTTGTGTGT
* * * *
10560551 GAGCTAGTGTAAGACATGTCCGGGACGTGCATCAGCCACCTT--ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-G--ACCTTAGAAGA
* * ** *
10560597 GAGCCAGTGTAAGACCGTGTCTGAGACATGGCATCGATATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTT-AGAAGA
*
10560645 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTTGAGAAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGA-CCTT-AGAAG-A
* * *
10560692 -AGCCAGTGTAAGACATGTCTGAGACATGCATCG-GC-TACAAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTTAGAAGA
*
10560734 TGATAGTCAGTGTAAGACCATGTCTGGGACATG
1 -G--AGCCAGTGTAAGA-CATGTCTGGGACATG
10560767 GCATTGGCAC
Statistics
Matches: 138, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 1 0.01
45 5 0.04
46 67 0.49
47 38 0.28
48 22 0.16
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTTAGAAGA
Found at i:10567799 original size:20 final size:21
Alignment explanation
Indices: 10567759--10567799 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10567749 TAAATTAATA
*
10567759 ATTAAAATGACATGTTTATAT
1 ATTAAAATGACATGATTATAT
*
10567780 ATTAAAATTACA-GATTATAT
1 ATTAAAATGACATGATTATAT
10567800 CTATATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (21 bp):
ATTAAAATGACATGATTATAT
Found at i:10570349 original size:13 final size:13
Alignment explanation
Indices: 10570331--10570366 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
10570321 CGTCCTTTTA
10570331 TTCTAATAGTAGG
1 TTCTAATAGTAGG
10570344 TTCTAATAGTAGG
1 TTCTAATAGTAGG
10570357 TTCTAATAGT
1 TTCTAATAGT
10570367 TGGTGAGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (13 bp):
TTCTAATAGTAGG
Found at i:10575633 original size:25 final size:24
Alignment explanation
Indices: 10575605--10575657 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
10575595 AATATATTAT
*
10575605 TTAATATTTAGAT-TTTGATATTTTC
1 TTAATATGT-GATATTTG-TATTTTC
*
10575630 TTAA-ATGTGATATTTGTATTTTT
1 TTAATATGTGATATTTGTATTTTC
10575653 TTAAT
1 TTAAT
10575658 TTAATGTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
23 13 0.54
24 7 0.29
25 4 0.17
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.60
Consensus pattern (24 bp):
TTAATATGTGATATTTGTATTTTC
Found at i:10592663 original size:26 final size:27
Alignment explanation
Indices: 10592620--10592672 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
10592610 ACTTTTTATT
*
10592620 AAATTAAATAAAATTTATTTTTTAAAA
1 AAATTAAATAAAATTTATTTTATAAAA
*
10592647 AAATTTAATAAAA-TTATTTTATAAAA
1 AAATTAAATAAAATTTATTTTATAAAA
10592673 CATTTCATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
AAATTAAATAAAATTTATTTTATAAAA
Found at i:10592685 original size:25 final size:24
Alignment explanation
Indices: 10592620--10592677 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 24
10592610 ACTTTTTATT
*
10592620 AAATTAAATAAAATTTATTTTTTAAAA
1 AAATTTAATAAAA-TTA--TTTTAAAA
10592647 AAATTTAATAAAATTATTTTATAAA
1 AAATTTAATAAAATTATTTTA-AAA
*
10592672 ACATTT
1 AAATTT
10592678 CATCAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 5 0.18
25 8 0.29
26 3 0.11
27 12 0.43
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATTTAATAAAATTATTTTAAAA
Found at i:10595442 original size:19 final size:19
Alignment explanation
Indices: 10595418--10595456 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
10595408 AATCATGTTT
10595418 TAGTTTTATGTAATCTTAA
1 TAGTTTTATGTAATCTTAA
*
10595437 TAGTTTTATTTAATCTTAA
1 TAGTTTTATGTAATCTTAA
10595456 T
1 T
10595457 TTACTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (19 bp):
TAGTTTTATGTAATCTTAA
Found at i:10596658 original size:14 final size:14
Alignment explanation
Indices: 10596639--10596665 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10596629 GTAAAATAAT
10596639 GAAAATATTTTACG
1 GAAAATATTTTACG
10596653 GAAAATATTTTAC
1 GAAAATATTTTAC
10596666 ATGCAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.37
Consensus pattern (14 bp):
GAAAATATTTTACG
Found at i:10601443 original size:21 final size:21
Alignment explanation
Indices: 10601417--10601457 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10601407 ATCTGCTCAA
* *
10601417 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
10601438 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
10601458 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:10608591 original size:46 final size:45
Alignment explanation
Indices: 10608538--10608713 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
10608528 TGGTTGAGCA
10608538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
10608584 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGC-GATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-A-CTTATG-GA-T-GCGAAG
* *
10608631 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
10608677 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10608714 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.61
47 31 0.28
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:10608694 original size:93 final size:93
Alignment explanation
Indices: 10608535--10608705 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
10608525 GGATGGTTGA
* * * *
10608535 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
10608600 TGAGTCCGAGTTCGAGCGATGTAACTAG
66 TGAGTCCGAGTTCGAGCGATGTAACTAG
* *
10608628 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
10608693 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
10608706 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGCGATGTAACTAG
Found at i:10613146 original size:39 final size:39
Alignment explanation
Indices: 10613090--10613217 Score: 168
Period size: 39 Copynumber: 3.3 Consensus size: 39
10613080 TATGAGATTG
*
10613090 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGATATGAGGTCCGCAGGCTATATGCTGGA
* *
10613129 AAAATATCCGGATATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGATATGAGGTCCGCAGGCTATATGCTGGA
* ** **
10613168 AATATATTTGGACT-TGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGA-TATGAGGTCCGCAGGCTATATGCTGGA
10613207 AAAATATCCGG
1 AAAATATCCGG
10613218 GTTAAAGACC
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
39 74 0.99
40 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGATATGAGGTCCGCAGGCTATATGCTGGA
Found at i:10613233 original size:78 final size:77
Alignment explanation
Indices: 10613099--10613252 Score: 202
Period size: 78 Copynumber: 2.0 Consensus size: 77
10613089 GAAAATATCC
* * * *
10613099 GGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGATATGAGATCCGCAGGCTATATGC
1 GGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGATATAAGACCCGCAGGCT-TACGC
10613164 TAGAAATATATTT
65 TAGAAATATATTT
* * *
10613177 GGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGGGT-TAAAGACCCGCAGGCTTACGC
1 GGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGATAT-AAGACCCGCAGGCTTACGC
* *
10613241 TAGTAATGTATT
65 TAGAAATATATT
10613253 CCGAGCTCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
77 15 0.23
78 51 0.77
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (77 bp):
GGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGATATAAGACCCGCAGGCTTACGCT
AGAAATATATTT
Found at i:10621269 original size:39 final size:39
Alignment explanation
Indices: 10621224--10621347 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
10621214 GAGATTGGAA
10621224 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
10621263 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* * ** *
10621302 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAA-
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
10621340 ATATCCGG
1 ATATCCGG
10621348 GTTAAAGACC
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 8 0.10
39 72 0.90
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:10629446 original size:39 final size:38
Alignment explanation
Indices: 10629347--10629468 Score: 172
Period size: 38 Copynumber: 3.2 Consensus size: 38
10629337 TATGAGATTG
*
10629347 AAATATCCGGACATGAGGTCTGCAGGCTATATGCTGGA
1 AAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
10629385 AAATATCCTGACATGAGATCCGCAGGCTATATGCTAGGA
1 AAATATCCGGACATGAGGTCCGCAGGCTATATGCT-GGA
* * **
10629424 ATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
10629462 AAATATC
1 AAATATC
10629469 TGGGTTAAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 41 0.56
39 32 0.44
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (38 bp):
AAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:10629485 original size:77 final size:76
Alignment explanation
Indices: 10629349--10629497 Score: 183
Period size: 77 Copynumber: 1.9 Consensus size: 76
10629339 TGAGATTGAA
* * * *
10629349 ATATCCGGACATGAGGTCTGCAGGCTATATGCTGGAAAATATCCTGACATGAGATCCGCAGGCTA
1 ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAATATCCTGACATAAGACCCGCAGGCT-
*
10629414 TATGCTAGGAAT
65 TACGCTAGGAAT
* * ***
10629426 ATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAATAT-CTGGGTTAAAGACCCGCAGGCT
1 ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAATATCCTGACAT-AAGACCCGCAGGCT
10629490 TACGCTAG
65 TACGCTAG
10629498 TAATGTATTC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
76 11 0.18
77 50 0.82
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (76 bp):
ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAATATCCTGACATAAGACCCGCAGGCTT
ACGCTAGGAAT
Found at i:10630645 original size:22 final size:23
Alignment explanation
Indices: 10630619--10630664 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
10630609 CAACCAAACC
10630619 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
10630641 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
10630664 A
1 A
10630665 CATCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:10636509 original size:14 final size:14
Alignment explanation
Indices: 10636490--10636517 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10636480 GAACAATCTT
10636490 GCTTAAATTAATTG
1 GCTTAAATTAATTG
10636504 GCTTAAATTAATTG
1 GCTTAAATTAATTG
10636518 ATTTGTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
GCTTAAATTAATTG
Found at i:10645696 original size:12 final size:12
Alignment explanation
Indices: 10645679--10645704 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10645669 CGTTGTTTCC
10645679 AACATGATTCGG
1 AACATGATTCGG
10645691 AACATGATTCGG
1 AACATGATTCGG
10645703 AA
1 AA
10645705 TTGTTGGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (12 bp):
AACATGATTCGG
Found at i:10646059 original size:38 final size:38
Alignment explanation
Indices: 10646017--10646094 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
10646007 TTTGATTGAA
10646017 GCTTAATTGTGATGCATAATTTGATATTGCGGTGATTT
1 GCTTAATTGTGATGCATAATTTGATATTGCGGTGATTT
10646055 GCTTAATTGTGATGCATAATTTGATATTGCGGTGATTT
1 GCTTAATTGTGATGCATAATTTGATATTGCGGTGATTT
10646093 GC
1 GC
10646095 AGGGACTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.23, C:0.09, G:0.24, T:0.44
Consensus pattern (38 bp):
GCTTAATTGTGATGCATAATTTGATATTGCGGTGATTT
Found at i:10646157 original size:34 final size:34
Alignment explanation
Indices: 10646108--10646174 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
10646098 GACTATAATA
* *
10646108 GTGATAACGCTCGTACACCTCTGCTGAAACCATG
1 GTGATAACACCCGTACACCTCTGCTGAAACCATG
*
10646142 GTGATAACACCCGTACACCTCTGCTGTAACCAT
1 GTGATAACACCCGTACACCTCTGCTGAAACCAT
10646175 TGCAATTCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (34 bp):
GTGATAACACCCGTACACCTCTGCTGAAACCATG
Found at i:10657158 original size:15 final size:16
Alignment explanation
Indices: 10657128--10657160 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10657118 TTTAAAAAAA
*
10657128 TTAAATTATAATATAT
1 TTAAAATATAATATAT
10657144 TTAAAATAT-ATATAT
1 TTAAAATATAATATAT
10657159 TT
1 TT
10657161 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAAATATAATATAT
Found at i:10658937 original size:25 final size:26
Alignment explanation
Indices: 10658909--10658957 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10658899 GTTAGAATGA
*
10658909 TCCAGCTTT-AGACATTTTGTCGGTC
1 TCCAGCTTTGAGACATTTTATCGGTC
*
10658934 TCCAGCTTTGAGACGTTTTATCGG
1 TCCAGCTTTGAGACATTTTATCGG
10658958 AACCATCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.39
Consensus pattern (26 bp):
TCCAGCTTTGAGACATTTTATCGGTC
Found at i:10662612 original size:22 final size:22
Alignment explanation
Indices: 10662587--10662634 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
10662577 TATTTAACGT
10662587 ATTTGA-TAAACA-AATATATTTA
1 ATTTGATTAAA-ATAATAT-TTTA
*
10662609 ATTTTATTAAAATAATATTTTA
1 ATTTGATTAAAATAATATTTTA
10662631 ATTT
1 ATTT
10662635 TTTTCTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTTGATTAAAATAATATTTTA
Found at i:10663201 original size:13 final size:13
Alignment explanation
Indices: 10663183--10663207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10663173 TTTCATATTT
10663183 TTATATTATTAAA
1 TTATATTATTAAA
10663196 TTATATTATTAA
1 TTATATTATTAA
10663208 CCTTAAGCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATATTATTAAA
Found at i:10665093 original size:21 final size:21
Alignment explanation
Indices: 10665069--10665109 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
10665059 CGTTTTTGGT
10665069 AAAACGCCGCTAAAAACAGAA
1 AAAACGCCGCTAAAAACAGAA
10665090 AAAACGCCGCTAAAAACAGA
1 AAAACGCCGCTAAAAACAGA
10665110 GCATTAGCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.24, G:0.15, T:0.05
Consensus pattern (21 bp):
AAAACGCCGCTAAAAACAGAA
Found at i:10665145 original size:40 final size:41
Alignment explanation
Indices: 10665090--10665185 Score: 149
Period size: 41 Copynumber: 2.4 Consensus size: 41
10665080 AAAAACAGAA
* * *
10665090 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCCTTCGAT
*
10665130 AAAACGCCGTTAAAAACCAGAGCATTAGCGGCGCCTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCCTTCGAT
10665171 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
10665186 GTCATATAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 15 0.30
41 35 0.70
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCCTTCGAT
Found at i:10666714 original size:13 final size:13
Alignment explanation
Indices: 10666696--10666728 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
10666686 ATTGGAACGT
10666696 CTAAAATTTCCCC
1 CTAAAATTTCCCC
10666709 CTAAAATTTCCCC
1 CTAAAATTTCCCC
10666722 CTAAAAT
1 CTAAAAT
10666729 CGGTATCCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (13 bp):
CTAAAATTTCCCC
Found at i:10666777 original size:14 final size:14
Alignment explanation
Indices: 10666758--10666787 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10666748 CTAATTTTCC
*
10666758 CCCCAAATCGAAAT
1 CCCCAAATCAAAAT
10666772 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
10666786 CC
1 CC
10666788 TTCCACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13
Consensus pattern (14 bp):
CCCCAAATCAAAAT
Found at i:10669492 original size:5 final size:5
Alignment explanation
Indices: 10669478--10669507 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
10669468 ACGTGGCAAT
*
10669478 TTTAA ATTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA
10669508 CTAATAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTTAA
Found at i:10670992 original size:19 final size:18
Alignment explanation
Indices: 10670966--10671004 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10670956 TGATTCTATA
10670966 TTTATATTTAATCTAATT
1 TTTATATTTAATCTAATT
* *
10670984 TTTATTATTTATTTTAATT
1 TTTA-TATTTAATCTAATT
10671003 TT
1 TT
10671005 GATTCTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATATTTAATCTAATT
Found at i:10671015 original size:19 final size:19
Alignment explanation
Indices: 10670979--10671023 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
10670969 ATATTTAATC
* *
10670979 TAATTTTTATTATTTATTT
1 TAATTTTGATTATATATTT
*
10670998 TAATTTTGATTCTATATTT
1 TAATTTTGATTATATATTT
*
10671017 TTATTTT
1 TAATTTT
10671024 TATTTTAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
TAATTTTGATTATATATTT
Found at i:10671029 original size:6 final size:6
Alignment explanation
Indices: 10670981--10671034 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
10670971 ATTTAATCTA
* * * *
10670981 ATTTTT ATTATTT ATTTTA ATTTTG ATTCTAT ATTTTT ATTTTT ATTTTA
1 ATTTTT ATT-TTT ATTTTT ATTTTT ATT-TTT ATTTTT ATTTTT ATTTTT
10671031 ATTT
1 ATTT
10671035 GATAACGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 30 0.75
7 10 0.25
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (6 bp):
ATTTTT
Found at i:10677131 original size:16 final size:16
Alignment explanation
Indices: 10677102--10677144 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
10677092 GTGGCCGGAG
10677102 CTCTC-CCCTT-TCCC
1 CTCTCTCCCTTCTCCC
*
10677116 CTCTCTTCCTTCTCCC
1 CTCTCTCCCTTCTCCC
10677132 CTCTCTCCCTTCT
1 CTCTCTCCCTTCT
10677145 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.20
15 4 0.16
16 16 0.64
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTCTCCCTTCTCCC
Found at i:10678115 original size:15 final size:14
Alignment explanation
Indices: 10678086--10678119 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
10678076 TTGATATTAG
*
10678086 TATATGTTTATATA
1 TATATCTTTATATA
10678100 TATATCTTTAATATA
1 TATATCTTT-ATATA
10678115 TATAT
1 TATAT
10678120 ATATAGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (14 bp):
TATATCTTTATATA
Found at i:10678201 original size:21 final size:21
Alignment explanation
Indices: 10678175--10678216 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10678165 ATTTTAACAT
* *
10678175 TATATTATATATGTATTTATA
1 TATATTACATATGTATATATA
*
10678196 TATATTACGTATGTATATATA
1 TATATTACATATGTATATATA
10678217 CCTTTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.52
Consensus pattern (21 bp):
TATATTACATATGTATATATA
Found at i:10678207 original size:17 final size:18
Alignment explanation
Indices: 10678174--10678216 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
10678164 TATTTTAACA
*
10678174 TTATAT-TATATATGTAT
1 TTATATATATATACGTAT
10678191 TTATATATAT-TACGTAT
1 TTATATATATATACGTAT
*
10678208 GTATATATA
1 TTATATATA
10678217 CCTTTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (18 bp):
TTATATATATATACGTAT
Found at i:10678535 original size:17 final size:18
Alignment explanation
Indices: 10678513--10678546 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
10678503 CTACTATTTA
10678513 TATATA-TATATTTTACG
1 TATATACTATATTTTACG
*
10678530 TATATACTATTTTTTAC
1 TATATACTATATTTTAC
10678547 ACATATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.56
Consensus pattern (18 bp):
TATATACTATATTTTACG
Found at i:10699433 original size:16 final size:16
Alignment explanation
Indices: 10699404--10699446 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
10699394 GTGGCCGGAG
10699404 CTCTC-CCCTT-TCCC
1 CTCTCTCCCTTCTCCC
*
10699418 CTCTCTTCCTTCTCCC
1 CTCTCTCCCTTCTCCC
10699434 CTCTCTCCCTTCT
1 CTCTCTCCCTTCT
10699447 TTCTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 5 0.20
15 4 0.16
16 16 0.64
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTCTCCCTTCTCCC
Found at i:10700410 original size:15 final size:14
Alignment explanation
Indices: 10700381--10700414 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
10700371 TTGATATTAG
*
10700381 TATATGTTTATATA
1 TATATCTTTATATA
10700395 TATATCTTTAATATA
1 TATATCTTT-ATATA
10700410 TATAT
1 TATAT
10700415 AGGTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (14 bp):
TATATCTTTATATA
Found at i:10701998 original size:131 final size:130
Alignment explanation
Indices: 10701764--10702092 Score: 461
Period size: 131 Copynumber: 2.6 Consensus size: 130
10701754 TATTCATTTA
* *
10701764 AAAAATTCTTTAAAACGAAGGCACTGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
1 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
* * * *
10701829 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATTGAATATTCCTTTGGAATTTCATTCATGTCTT
66 CTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT-TT
10701894 T
130 T
* *
10701895 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGAGGAATCTTGCCCTATCGTG
1 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
*
10701960 CTGGGTTGCAATTTCTCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTT
66 CTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTT
** * * * * *
10702025 CTAAATTC--TAAAA--AAGGCAATGTTCAATGTCTAGAAATTTGGGGAATCGTGCCCTA-CTGT
1 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC-GT
10702085 GCTGGGTT
65 GCTGGGTT
10702093 TCGGTTTTTT
Statistics
Matches: 179, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
125 1 0.01
126 46 0.26
128 5 0.03
130 9 0.05
131 118 0.66
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.36
Consensus pattern (130 bp):
AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCCCATTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTT
Found at i:10710580 original size:10 final size:11
Alignment explanation
Indices: 10710560--10710584 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10710550 CAAAAACTGC
10710560 TTTGTTTTTTT
1 TTTGTTTTTTT
10710571 TTTGTTTTTTT
1 TTTGTTTTTTT
10710582 TTT
1 TTT
10710585 TACTTAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTGTTTTTTT
Found at i:10718419 original size:46 final size:46
Alignment explanation
Indices: 10718352--10718895 Score: 750
Period size: 46 Copynumber: 11.8 Consensus size: 46
10718342 AGTGTGCTCT
* * *
10718352 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
10718398 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
10718444 CTGATATTAAATGTGTAAGA-CATGGTTGAAAGATACCACGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
10718489 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10718535 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
10718581 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
10718627 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10718674 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10718720 TTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
10718766 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
10718812 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
10718859 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
10718896 TATGACATCA
Statistics
Matches: 456, Mismatches: 39, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
45 41 0.09
46 332 0.73
47 83 0.18
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:10718693 original size:139 final size:138
Alignment explanation
Indices: 10718361--10718895 Score: 759
Period size: 139 Copynumber: 3.9 Consensus size: 138
10718351 TCTGATATGG
* * **
10718361 AATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCATGGTT
* * * * *
10718426 GAAAGATACCATGGCAACCTGATATTAAATGTGTAAGA-CATGGTTGAAAGATACCACGACAACG
66 GAAAGATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
10718490 TGATATGA
131 TGACATGA
*
10718498 AATGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCATGGTT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCATGGTT
10718563 GAAAGATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
66 GAAAGATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
10718628 TGACGGGAA
131 TGACATG-A
* * **
10718637 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCATGGTT
* * *
10718702 GAAAGATACCATGGCAACTTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
66 GAAAGATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
10718767 TGACATGA
131 TGACATGA
* * ***
10718775 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATG-AAATGAATAAGACCATGGT
* * * * *
10718840 TGAAAGATACCATGGCAACATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
65 TGAAAGATACCATGGCAACCTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
10718896 TATGACATCA
Statistics
Matches: 360, Mismatches: 34, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
137 98 0.27
138 69 0.19
139 193 0.54
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (138 bp):
AATGAGTAAGACCATGGTTGAAAGATACCATGACAACGTGATATGAAATGAATAAGACCATGGTT
GAAAGATACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
TGACATGA
Found at i:10718732 original size:185 final size:185
Alignment explanation
Indices: 10718353--10718902 Score: 854
Period size: 185 Copynumber: 3.0 Consensus size: 185
10718343 GTGTGCTCTC
* ** * *
10718353 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAGA
* **** **
10718418 CCATGGTTGAAAGATACCATGGCAACCTGA-TATTAAATGTGTAAGA-CATGGTTGAAAGATACC
66 CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
* *
10718481 ACGACAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
131 ATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
10718536 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAGA
10718601 CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
66 CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
* *
10718666 ATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACT
131 ATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
*
10718721 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAGA
10718786 CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
66 CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
* * * * * * *
10718851 ATGGCAACATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATACTATGACA
131 ATGGCAACGTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGACA
10718903 TCATGTCGAA
Statistics
Matches: 339, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
183 89 0.26
184 11 0.03
185 239 0.71
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (185 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAGA
CCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACC
ATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACG
Found at i:10721263 original size:17 final size:17
Alignment explanation
Indices: 10721241--10721274 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
10721231 CATAATTTAT
10721241 ATTATT-TAAAAATATTA
1 ATTATTATAAAAA-ATTA
10721258 ATTATTATAAAAAATTA
1 ATTATTATAAAAAATTA
10721275 TTAGCATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTATAAAAAATTA
Found at i:10723299 original size:104 final size:103
Alignment explanation
Indices: 10723163--10723428 Score: 408
Period size: 103 Copynumber: 2.6 Consensus size: 103
10723153 GTTGTACATA
** *
10723163 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
10723228 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
10723267 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
10723331 TCTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * * *
10723370 AAGGGGTTGCTAAGTGCTGATTCCTCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
10723429 AATAACGGTT
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 82 0.55
104 66 0.45
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:10730428 original size:103 final size:104
Alignment explanation
Indices: 10730184--10730449 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
10730174 GTTGTACATA
** *
10730184 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
10730249 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
10730288 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
10730352 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
10730391 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
10730450 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:10735552 original size:162 final size:162
Alignment explanation
Indices: 10735285--10735605 Score: 536
Period size: 162 Copynumber: 2.0 Consensus size: 162
10735275 GAAGGAAGAT
* *
10735285 CTGCAAAGCTAGATGGTACTCTCAATGGTGGTTCATTGTTGCCCCGGAAAAGGAAAACTGCGAAG
1 CTGCAAAGCTAGATGGTACTCTCAATGGTGGTTCATTGTTGCCCCGAAAAAGGAAAACTGAGAAG
*
10735350 AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACACTGCAGATGAGATTAA
66 AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTAA
*
10735415 GCAAACGACATATAGGACTGAAACTCCACCGC
131 GCAAACAACATATAGGACTGAAACTCCACCGC
* * * *
10735447 CTGCAAAGCTAGCTGGTACTGTCAATGGTGGTTCGTTGTTGCCCCAGAAAAAGG-GAACTGAGAA
1 CTGCAAAGCTAGATGGTACTCTCAATGGTGGTTCATTGTTGCCCC-GAAAAAGGAAAACTGAGAA
*
10735511 GAAAAGTTCTAAAATTGATCCACATCAGTTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTA
65 GAAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTA
*
10735576 AGCAAACAACATATAGGAGTGAAACTCCAC
130 AGCAAACAACATATAGGACTGAAACTCCAC
10735606 TTCCTTCAGA
Statistics
Matches: 148, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
162 141 0.95
163 7 0.05
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (162 bp):
CTGCAAAGCTAGATGGTACTCTCAATGGTGGTTCATTGTTGCCCCGAAAAAGGAAAACTGAGAAG
AAAAGTTCTAAAATTGATCCACATCAGGTCTGTTTTCCTGAAGAAAACAATGCAGATGAGATTAA
GCAAACAACATATAGGACTGAAACTCCACCGC
Found at i:10744701 original size:26 final size:26
Alignment explanation
Indices: 10744672--10744724 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10744662 GTACCAAGGG
10744672 AAGAGAGACGAATGGATGAATTTCAC
1 AAGAGAGACGAATGGATGAATTTCAC
*
10744698 AAGAGAGACGAATGGATGAGTTTCAC
1 AAGAGAGACGAATGGATGAATTTCAC
10744724 A
1 A
10744725 TTATGCTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.11, G:0.28, T:0.19
Consensus pattern (26 bp):
AAGAGAGACGAATGGATGAATTTCAC
Found at i:10751754 original size:2 final size:2
Alignment explanation
Indices: 10751749--10751779 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
10751739 ATACTTACAA
*
10751749 AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
10751780 TATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:10752267 original size:21 final size:21
Alignment explanation
Indices: 10752241--10752281 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10752231 CACAGAAGCA
*
10752241 CATAAGTGCTAAATGGAAACC
1 CATAAGGGCTAAATGGAAACC
* *
10752262 CATAAGGGTTGAATGGAAAC
1 CATAAGGGCTAAATGGAAAC
10752282 TCATTGAAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (21 bp):
CATAAGGGCTAAATGGAAACC
Found at i:10756228 original size:42 final size:43
Alignment explanation
Indices: 10756115--10756274 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 43
10756105 AGCTCGTACA
* * * * *
10756115 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * * *
10756158 ATGCCACTGTCCCAGATAGGGT-TCTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGACATGGTCT-TACACGAAATCAAATATCG
* * *
10756200 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCAAAAATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAAATATCG
** * ** *
10756244 ATAACAACGTCCCAGATGTGGTCTTATACGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGA
10756275 CAACACATAT
Statistics
Matches: 91, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.29
43 41 0.45
44 24 0.26
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:10759088 original size:17 final size:18
Alignment explanation
Indices: 10759048--10759088 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
10759038 TAATACACAT
*
10759048 CATTCATATACAATTATG
1 CATTCATATACAATTATC
10759066 CATTCATA-ATCAA-TATC
1 CATTCATATA-CAATTATC
10759083 CATTCA
1 CATTCA
10759089 ACTCATCCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.39, C:0.22, G:0.02, T:0.37
Consensus pattern (18 bp):
CATTCATATACAATTATC
Found at i:10767941 original size:19 final size:21
Alignment explanation
Indices: 10767917--10767958 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10767907 TTTAAAAAAT
10767917 AAATA-TT-AAAATTTCTAAA
1 AAATATTTCAAAATTTCTAAA
*
10767936 AAATATTTCAAAATTTGTAAA
1 AAATATTTCAAAATTTCTAAA
10767957 AA
1 AA
10767959 TAAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 13 0.65
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATATTTCAAAATTTCTAAA
Found at i:10769952 original size:34 final size:34
Alignment explanation
Indices: 10769900--10769969 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 34
10769890 TTATATGTTT
* *
10769900 ATAATTTTTTAATACTTTTTAATTTTTTTTAAAAA
1 ATAATTTTTTAATACTTTTTAA-ATTTTTAAAAAA
* *
10769935 ATAATTTTTTGA-GCTTTTTAAATTTTTAAAAAA
1 ATAATTTTTTAATACTTTTTAAATTTTTAAAAAA
10769968 AT
1 AT
10769970 TATTAATTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 12 0.39
34 8 0.26
35 11 0.35
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (34 bp):
ATAATTTTTTAATACTTTTTAAATTTTTAAAAAA
Found at i:10770285 original size:13 final size:13
Alignment explanation
Indices: 10770267--10770304 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
10770257 TAGATAAGTA
10770267 AAAATATAAATTT
1 AAAATATAAATTT
*
10770280 AAAATATAAAATAT
1 AAAATAT-AAATTT
10770294 AAAAT-TAAATT
1 AAAATATAAATT
10770305 GGTTATCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 4 0.18
13 8 0.36
14 10 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAATATAAATTT
Found at i:10776542 original size:18 final size:18
Alignment explanation
Indices: 10776519--10776568 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
10776509 ATTTAGGAAT
10776519 AAATATATAAAATCTA-AA
1 AAATATATAAAAT-TATAA
10776537 AAATATATATAAATTATTAA
1 AAATATATA-AAATTA-TAA
10776557 AAATATA-AAAAT
1 AAATATATAAAAT
10776569 ACAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 15 0.52
19 5 0.17
20 9 0.31
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATATATAAAATTATAA
Found at i:10776546 original size:20 final size:20
Alignment explanation
Indices: 10776521--10776563 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10776511 TTAGGAATAA
*
10776521 ATATATAAAATCTAAAAAAT
1 ATATATAAAATATAAAAAAT
* *
10776541 ATATATAAATTATTAAAAAT
1 ATATATAAAATATAAAAAAT
10776561 ATA
1 ATA
10776564 AAAATACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
ATATATAAAATATAAAAAAT
Found at i:10789634 original size:12 final size:12
Alignment explanation
Indices: 10789617--10789642 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10789607 TATTAGCTTC
10789617 TTTTCTTTTTTT
1 TTTTCTTTTTTT
10789629 TTTTCTTTTTTT
1 TTTTCTTTTTTT
10789641 TT
1 TT
10789643 GCTTTGTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:10790689 original size:4 final size:4
Alignment explanation
Indices: 10790680--10790723 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
10790670 CGCAACCATA
10790680 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
10790724 CTATAGAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:10793471 original size:25 final size:24
Alignment explanation
Indices: 10793428--10793491 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
10793418 ATCAATTTGG
*
10793428 GTTTT-AAATATTAATGGTTATTGA
1 GTTTTAAAATATTAATGGTT-TAGA
10793452 GTTTTAAAAT-TTAATGGGTTTAGA
1 GTTTTAAAATATTAAT-GGTTTAGA
*
10793476 CTTTTAAAAATATTAA
1 GTTTT-AAAATATTAA
10793492 ATTTTAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 17 0.50
25 13 0.38
26 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.47
Consensus pattern (24 bp):
GTTTTAAAATATTAATGGTTTAGA
Found at i:10793881 original size:37 final size:36
Alignment explanation
Indices: 10793815--10793885 Score: 83
Period size: 37 Copynumber: 1.9 Consensus size: 36
10793805 TTAAAATATT
*
10793815 AAAAATTAAATAAATAAAATACATTATTATTAATTTA
1 AAAAATTAAATAAATAAAATACATAATTA-TAATTTA
*
10793852 AAAAATTTAAT-AATAAATATATCA-AATTATAATT
1 AAAAATTAAATAAATAAA-ATA-CATAATTATAATT
10793886 CAATAATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
36 11 0.37
37 17 0.57
38 2 0.07
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (36 bp):
AAAAATTAAATAAATAAAATACATAATTATAATTTA
Found at i:10799954 original size:53 final size:53
Alignment explanation
Indices: 10799798--10799963 Score: 201
Period size: 53 Copynumber: 3.1 Consensus size: 53
10799788 GACGAAAAAT
* * * **
10799798 ATGTGATAAGTGTG-C-CCGTTTAATACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAACTGGGCTATGGCATCGGTATA
10799850 ATGTGATAATGTGACTCCGTATAAGACCATAACTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAACTGGGCTATGGCATCGGTATA
* ** * *
10799903 ATGTGATAATGTGATTCCGTATAAGACCATGTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAACTGGGCTATGGCATCGGTAT-A
10799957 TATGTGA
1 -ATGTGA
10799964 ACCGTGTAAG
Statistics
Matches: 100, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
51 4 0.04
52 10 0.10
53 79 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAACTGGGCTATGGCATCGGTATA
Found at i:10806537 original size:390 final size:390
Alignment explanation
Indices: 10805818--10806601 Score: 1568
Period size: 390 Copynumber: 2.0 Consensus size: 390
10805808 ACTCAATTTC
10805818 CACAATTTATGGTGAATTTCAAAAGATACACTACTGCAGTAACCCAAAACTGCCAAGGCCATATT
1 CACAATTTATGGTGAATTTCAAAAGATACACTACTGCAGTAACCCAAAACTGCCAAGGCCATATT
10805883 TATCCATTCACCACTATTATTCACTAAATACATACAATATCATTTCATCCATCATGGTAAGAACA
66 TATCCATTCACCACTATTATTCACTAAATACATACAATATCATTTCATCCATCATGGTAAGAACA
10805948 CATAATTATGCTTCATAAGCATAGATCCATAATCTCAATGTCATCAAATATCAAGAACTTATTCT
131 CATAATTATGCTTCATAAGCATAGATCCATAATCTCAATGTCATCAAATATCAAGAACTTATTCT
10806013 AAATCGTGTCATTTTCATAGTATTCACCAATTCTTAATCTTTTCGGGCCATTTTACATTTTCGTT
196 AAATCGTGTCATTTTCATAGTATTCACCAATTCTTAATCTTTTCGGGCCATTTTACATTTTCGTT
10806078 CATAATCAAATTAAGGAACGATTATGGAATTGAGTACCTCATTATCACAATGCCATAGTAAAACT
261 CATAATCAAATTAAGGAACGATTATGGAATTGAGTACCTCATTATCACAATGCCATAGTAAAACT
10806143 ATGGTCTTGCACATAGTCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAAGGAT
326 ATGGTCTTGCACATAGTCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAAGGAT
10806208 CACAATTTATGGTGAATTTCAAAAGATACACTACTGCAGTAACCCAAAACTGCCAAGGCCATATT
1 CACAATTTATGGTGAATTTCAAAAGATACACTACTGCAGTAACCCAAAACTGCCAAGGCCATATT
10806273 TATCCATTCACCACTATTATTCACTAAATACATACAATATCATTTCATCCATCATGGTAAGAACA
66 TATCCATTCACCACTATTATTCACTAAATACATACAATATCATTTCATCCATCATGGTAAGAACA
10806338 CATAATTATGCTTCATAAGCATAGATCCATAATCTCAATGTCATCAAATATCAAGAACTTATTCT
131 CATAATTATGCTTCATAAGCATAGATCCATAATCTCAATGTCATCAAATATCAAGAACTTATTCT
10806403 AAATCGTGTCATTTTCATAGTATTCACCAATTCTTAATCTTTTCGGGCCATTTTACATTTTCGTT
196 AAATCGTGTCATTTTCATAGTATTCACCAATTCTTAATCTTTTCGGGCCATTTTACATTTTCGTT
10806468 CATAATCAAATTAAGGAACGATTATGGAATTGAGTACCTCATTATCACAATGCCATAGTAAAACT
261 CATAATCAAATTAAGGAACGATTATGGAATTGAGTACCTCATTATCACAATGCCATAGTAAAACT
10806533 ATGGTCTTGCACATAGTCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAAGGAT
326 ATGGTCTTGCACATAGTCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAAGGAT
10806598 CACA
1 CACA
10806602 TATCACACTG
Statistics
Matches: 394, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
390 394 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (390 bp):
CACAATTTATGGTGAATTTCAAAAGATACACTACTGCAGTAACCCAAAACTGCCAAGGCCATATT
TATCCATTCACCACTATTATTCACTAAATACATACAATATCATTTCATCCATCATGGTAAGAACA
CATAATTATGCTTCATAAGCATAGATCCATAATCTCAATGTCATCAAATATCAAGAACTTATTCT
AAATCGTGTCATTTTCATAGTATTCACCAATTCTTAATCTTTTCGGGCCATTTTACATTTTCGTT
CATAATCAAATTAAGGAACGATTATGGAATTGAGTACCTCATTATCACAATGCCATAGTAAAACT
ATGGTCTTGCACATAGTCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTACAAGGAT
Found at i:10806664 original size:47 final size:47
Alignment explanation
Indices: 10806532--10806702 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 47
10806522 ATAGTAAAAC
* * *
10806532 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAG-CCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCAT-GTCCCAGA
* * * *
10806581 CATGGTCTTACA-AGGATCACATATCACACTGATGCCATGTCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATGTCCCAGA
* * *
10806627 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATGTCCCAGA
* * * *
10806674 TATGGTCTTATACGGAAGCACATGTCACA
1 TATGGTCTTACACAGTAGCACATATCACA
10806703 TTTCTCCGAA
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
45 1 0.01
46 24 0.24
47 55 0.54
48 11 0.11
49 11 0.11
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATGTCCCAGA
Found at i:10809878 original size:235 final size:235
Alignment explanation
Indices: 10809467--10809943 Score: 828
Period size: 235 Copynumber: 2.0 Consensus size: 235
10809457 ATTGAATAGA
* * * *
10809467 ATATGTGAGTATTGAGTGGAAACTTAAAAAATGTATATTGCATTGAAATTGATTTGCATGTGGAT
1 ATATGTGAATATTAAGTGGAAAATTAAAAAATGTATATTGCATTGAAATTGATTTGCATGTCGAT
*
10809532 TGATATGGAAAAATGTATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAG
66 TGATATGGAAAAATGTATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAA
* *
10809597 TTTATTGAATACCCTATTAACTGTATCAGACTAGTCGGATATAGTTGGCACGCCATAGGATTGGA
131 TTTATTAAATACCCTATTAACTGTATCAGACTAGTCGGATATAGTTGGCACGCCATAGGATTAGA
10809662 AGTGTTTAGGGATATTCCGACTGTGTGTCGATGAGACACT
196 AGTGTTTAGGGATATTCCGACTGTGTGTCGATGAGACACT
*
10809702 ATATGTGAATATTAAGTGGAAAATTGAAAAATGTATATTGCATTGAAATTGATTTGCATGTCGAT
1 ATATGTGAATATTAAGTGGAAAATTAAAAAATGTATATTGCATTGAAATTGATTTGCATGTCGAT
10809767 TGATATGGAAAAATGTATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAA
66 TGATATGGAAAAATGTATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAA
* ** * *
10809832 TTTATTAAATACCCTATTAACTGTATCGGGTTAGTCGGATATAGTTGGCATGCTATAGGATTAGA
131 TTTATTAAATACCCTATTAACTGTATCAGACTAGTCGGATATAGTTGGCACGCCATAGGATTAGA
*
10809897 AGTGTTTAGGGATATTCCGACTGTGTGTCGTTGAGACACT
196 AGTGTTTAGGGATATTCCGACTGTGTGTCGATGAGACACT
10809937 ATATGTG
1 ATATGTG
10809944 TTGACTACTG
Statistics
Matches: 228, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
235 228 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.34
Consensus pattern (235 bp):
ATATGTGAATATTAAGTGGAAAATTAAAAAATGTATATTGCATTGAAATTGATTTGCATGTCGAT
TGATATGGAAAAATGTATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAA
TTTATTAAATACCCTATTAACTGTATCAGACTAGTCGGATATAGTTGGCACGCCATAGGATTAGA
AGTGTTTAGGGATATTCCGACTGTGTGTCGATGAGACACT
Found at i:10814028 original size:17 final size:17
Alignment explanation
Indices: 10813997--10814054 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
10813987 TAATAAATTT
*
10813997 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
10814015 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
10814032 ATAATA-A-TTAT-AT-
1 AAAATATATTTATAATA
10814045 AAAATATATT
1 AAAATATATT
10814055 GGTTTAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:10814565 original size:18 final size:17
Alignment explanation
Indices: 10814529--10814661 Score: 176
Period size: 18 Copynumber: 7.5 Consensus size: 17
10814519 AATCATATCT
10814529 TCTAAGATTGTATATCATA
1 TCTAAGATTG-A-ATCATA
10814548 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
*
10814566 TCTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
10814583 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
10814601 TCTAAGATTGTATAATA
1 TCTAAGATTGAATCATA
10814618 TCTAAGATTGCAATCATA
1 TCTAAGATTG-AATCATA
* *
10814636 TTTAAGATTGTATCATA
1 TCTAAGATTGAATCATA
10814653 TCTAAGATT
1 TCTAAGATT
10814662 ACATATCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
17 45 0.44
18 46 0.45
19 11 0.11
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (17 bp):
TCTAAGATTGAATCATA
Found at i:10814587 original size:35 final size:35
Alignment explanation
Indices: 10814529--10814670 Score: 230
Period size: 35 Copynumber: 4.0 Consensus size: 35
10814519 AATCATATCT
10814529 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
10814566 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
10814601 TCTAAGATTGTATAATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
10814636 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
10814671 TGAGGATTAT
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
35 85 0.85
36 5 0.05
37 10 0.10
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:10817826 original size:15 final size:14
Alignment explanation
Indices: 10817808--10817838 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
10817798 TTAATTTATT
10817808 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
10817823 TAATAATAATCTAA
1 TAATAATAATCTAA
10817837 TA
1 TA
10817839 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:10817849 original size:21 final size:20
Alignment explanation
Indices: 10817825--10817893 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
10817815 AATGCTAATA
10817825 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
10817846 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
10817865 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
10817886 ATAATAAT
1 ATAATAAT
10817894 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:10822028 original size:13 final size:13
Alignment explanation
Indices: 10822010--10822034 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10822000 TAAAATAAAA
10822010 GAAATAAAGAAAT
1 GAAATAAAGAAAT
10822023 GAAATAAAGAAA
1 GAAATAAAGAAA
10822035 AAAGGAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (13 bp):
GAAATAAAGAAAT
Found at i:10822106 original size:19 final size:19
Alignment explanation
Indices: 10822063--10822107 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10822053 CACGGTTAGC
10822063 AGGG-AAAGAAAGAAGAAA
1 AGGGAAAAGAAAGAAGAAA
*
10822081 AGAGAAAAGAAA-AAGAAAA
1 AGGGAAAAGAAAGAAG-AAA
10822100 AGGGAAAA
1 AGGGAAAA
10822108 CTAGGGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (19 bp):
AGGGAAAAGAAAGAAGAAA
Found at i:10823192 original size:235 final size:235
Alignment explanation
Indices: 10822781--10823257 Score: 812
Period size: 235 Copynumber: 2.0 Consensus size: 235
10822771 ATTGAATAGA
*
10822781 ATATGTGAATATTGAGTGGAAAATTGAAAATTGTATATTGCATTGAAATTGATTTGCATGTGGAT
1 ATATGTGAATATTGAGTGGAAAATCGAAAATTGTATATTGCATTGAAATTGATTTGCATGTGGAT
* * *
10822846 TGGTATGGAAAAATGTATTAAATTGGATTGAAACTAAATTGCAAATGAAATTGAAAAGTTGAAAG
66 TGATATGGAAAAATATATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAG
* *
10822911 TTTATTGAATACCCTATTAACTGTATCGGGCAAGTTGGACATAGTTGGCACGCCATAGGATTGGA
131 TTTATTGAATACCCTATTAACTATATCGGGCAAGTCGGACATAGTTGGCACGCCATAGGATTGGA
10822976 AGTGTTCAGGGATATTCCGACCGCGTGTCGATGAGACACT
196 AGTGTTCAGGGATATTCCGACCGCGTGTCGATGAGACACT
*
10823016 ATATGTGAATATTGAGTGGAAAATCGAAAAATTGTATATTGCATTGAAATTGATTTGTATGTGGA
1 ATATGTGAATATTGAGTGGAAAATCG-AAAATTGTATATTGCATTGAAATTGATTTGCATGTGGA
10823081 TTGATATGG-AAAATATATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAA
65 TTGATATGGAAAAATATATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAA
* * *
10823145 GTTTATTGAATACCCTATTAACTATATCGGGCTAGTCGGATATAGTTGGCATGCCATAGGATTGG
130 GTTTATTGAATACCCTATTAACTATATCGGGCAAGTCGGACATAGTTGGCACGCCATAGGATTGG
* ** *
10823210 AAGTGTTTAGGGATATTCCGATTGTGTGTCGATGAGACACT
195 AAGTGTTCAGGGATATTCCGACCGCGTGTCGATGAGACACT
10823251 ATATGTG
1 ATATGTG
10823258 TCGACTACTG
Statistics
Matches: 227, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
235 182 0.80
236 45 0.20
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.33
Consensus pattern (235 bp):
ATATGTGAATATTGAGTGGAAAATCGAAAATTGTATATTGCATTGAAATTGATTTGCATGTGGAT
TGATATGGAAAAATATATTAAATTGGATTGAAACTAAATTACAAATGAAATTGAAAAGTTGAAAG
TTTATTGAATACCCTATTAACTATATCGGGCAAGTCGGACATAGTTGGCACGCCATAGGATTGGA
AGTGTTCAGGGATATTCCGACCGCGTGTCGATGAGACACT
Found at i:10823373 original size:6 final size:6
Alignment explanation
Indices: 10823362--10823394 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
10823352 TGTATACCGC
*
10823362 TACTGT TACTGT CACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
10823395 CCTTACGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:10823400 original size:18 final size:18
Alignment explanation
Indices: 10823362--10823400 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10823352 TGTATACCGC
**
10823362 TACTGTTACTGTCACTGT
1 TACTGTTACTGTCACCCT
*
10823380 TACTGTTACTGTTACCCT
1 TACTGTTACTGTCACCCT
10823398 TAC
1 TAC
10823401 GGTGTATTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (18 bp):
TACTGTTACTGTCACCCT
Found at i:10831806 original size:9 final size:10
Alignment explanation
Indices: 10831780--10831808 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
10831770 CAAAACTTCG
10831780 AAGAAGAAAA
1 AAGAAGAAAA
10831790 AAGAAGAAAA
1 AAGAAGAAAA
10831800 AAG-AGAAAA
1 AAGAAGAAAA
10831809 CCCTGTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAGAAGAAAA
Found at i:10835742 original size:11 final size:11
Alignment explanation
Indices: 10835728--10835779 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
10835718 TCTTTCAATA
10835728 TTCTCTCAAAT
1 TTCTCTCAAAT
*
10835739 TTCTTTCAAA-
1 TTCTCTCAAAT
10835749 -TCTCTCAAAT
1 TTCTCTCAAAT
*
10835759 TTCTCTTAAAT
1 TTCTCTCAAAT
*
10835770 TCCTCTCAAA
1 TTCTCTCAAA
10835780 ACTCTCGTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 8 0.24
11 26 0.76
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:10835743 original size:22 final size:21
Alignment explanation
Indices: 10835718--10835779 Score: 83
Period size: 20 Copynumber: 2.9 Consensus size: 21
10835708 CAATCTTCAA
10835718 TCTTTCAATATTCTCTCAAATT
1 TCTTTCAA-ATTCTCTCAAATT
10835740 TCTTTCAAA-TCTCTCAAATT
1 TCTTTCAAATTCTCTCAAATT
10835760 TCTCTT-AAATTCCTCTCAAA
1 TCT-TTCAAATT-CTCTCAAA
10835780 ACTCTCGTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 17 0.46
21 4 0.11
22 16 0.43
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (21 bp):
TCTTTCAAATTCTCTCAAATT
Found at i:10838354 original size:46 final size:45
Alignment explanation
Indices: 10838329--10838584 Score: 298
Period size: 46 Copynumber: 5.4 Consensus size: 45
10838319 GATCAAGTGA
* *
10838329 CAAGTGGA-AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGAT
1 CAAGT-GACAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
* *
10838374 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
* *
10838420 CAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGA-CAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
*
10838466 CAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGAT
1 CAAGTGAC-------AAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
* * *
10838518 CAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGAT
1 CAAGTGAC-AAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
*
10838564 CAAGAGACAAAGTGATAAGTG
1 CAAGTGAC-AAGTGATAAGTG
10838585 GCTGCACTTA
Statistics
Matches: 196, Mismatches: 6, Indels: 17
0.89 0.03 0.08
Matches are distributed among these distances:
44 2 0.01
45 5 0.03
46 145 0.74
52 44 0.22
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (45 bp):
CAAGTGACAAGTGATAAGTGATAGCTTCAGCTATACTTATCTGAT
Found at i:10838390 original size:98 final size:94
Alignment explanation
Indices: 10838270--10838584 Score: 413
Period size: 98 Copynumber: 3.3 Consensus size: 94
10838260 TTTGAGTACT
* ** *
10838270 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-A-T-
*
10838335 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
63 -AAAGTGATAAGTGATAGCTTCGGCTATACTTA
10838368 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTG--ATAAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACATAAA
10838431 GTGATAAGTGATAGCTTCGGCTATACTTA
66 GTGATAAGTGATAGCTTCGGCTATACTTA
*
10838460 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGA
** *
10838525 C--AAAGTGATAAGTGATAGCTTTAGCTACACTTA
60 CATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
10838558 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTG
10838585 GCTGCACTTA
Statistics
Matches: 198, Mismatches: 11, Indels: 22
0.86 0.05 0.10
Matches are distributed among these distances:
92 56 0.28
94 1 0.01
95 3 0.02
96 1 0.01
98 137 0.69
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (94 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACATAAA
GTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:10838530 original size:144 final size:144
Alignment explanation
Indices: 10838270--10838584 Score: 513
Period size: 144 Copynumber: 2.2 Consensus size: 144
10838260 TTTGAGTACT
* *
10838270 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
10838335 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAAGTGATAAGTGATAGC
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
* *
10838400 TTCGGCTATACTTA
131 TTCAGCTACACTTA
* *
10838414 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
10838479 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
*
10838544 TTTAGCTACACTTA
131 TTCAGCTACACTTA
* *
10838558 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTG
10838585 GCTGCACTTA
Statistics
Matches: 158, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 158 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (144 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGATAGC
TTCAGCTACACTTA
Found at i:10838596 original size:37 final size:37
Alignment explanation
Indices: 10838548--10838693 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
10838538 GATAGCTTTA
*
10838548 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
10838585 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
10838622 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
10838659 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
10838694 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:10839795 original size:49 final size:49
Alignment explanation
Indices: 10839734--10839877 Score: 216
Period size: 49 Copynumber: 2.9 Consensus size: 49
10839724 ATGTGAACAT
* * *
10839734 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTGTGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGACTATGGCATCGGTAA
* *
10839784 GTGATATGTGATTTCGTGTAAGACCATAGCTGGACTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGACTATGGCATCGGTAA
* *
10839833 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGACTATGGCATCG
10839878 AGAAAACGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
49 83 0.95
50 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGACTATGGCATCGGTAA
Found at i:10842437 original size:18 final size:18
Alignment explanation
Indices: 10842414--10842456 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
10842404 TGCCAGGTAC
*
10842414 GTATCCTAGCCCTTTTAT
1 GTATCCTAGCCCTTATAT
10842432 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
10842450 GTTTCCT
1 GTATCCT
10842457 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:10843045 original size:116 final size:116
Alignment explanation
Indices: 10842841--10843222 Score: 640
Period size: 116 Copynumber: 3.3 Consensus size: 116
10842831 TATTTGTACA
* *
10842841 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAATGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
10842906 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
10842957 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
10843022 TATAATTTACTTTTATATTTTTAAT-AAATAGAAATTATTTTAAATAAGGT
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
** * * *
10843072 AACATTTTGAATATTTTTATATTATTTCATGCGATAATATAAAAGGTTGTTTTAAATAAAATAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
10843137 TATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
66 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
10843188 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
10843223 AAAATAGAAA
Statistics
Matches: 248, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
115 108 0.44
116 140 0.56
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:10843125 original size:62 final size:59
Alignment explanation
Indices: 10842944--10843226 Score: 190
Period size: 54 Copynumber: 4.9 Consensus size: 59
10842934 ATGGAAATTA
* *
10842944 TTTTAAATAAGGCAACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTG
1 TTTTAAATAAGGTAACATTTTGAATATTTTTATATTATTTCATG--A-TAAATAAAAGGTTG
* * * *
10843006 TTTTAAATAAAGT-A-ATTAT-AATTTACTTTTATATT-TTT-A--ATAAATAGAAA--TTA
1 TTTTAAATAAGGTAACATTTTGAA--TATTTTTATATTATTTCATGATAAATA-AAAGGTTG
10843059 TTTTAAATAAGGTAACATTTTGAATATTTTTATATTATTTCATGCGATAATATAAAAGGTTG
1 TTTTAAATAAGGTAACATTTTGAATATTTTTATATTATTTCAT--GATAA-ATAAAAGGTTG
** * * * *
10843121 TTTTAAATAAAAT-A-ATTAT-AATTTACTTTTATATT-TTTAAT-A-AAATGAAAA--TTA
1 TTTTAAATAAGGTAACATTTTGAA--TATTTTTATATTATTTCATGATAAAT-AAAAGGTTG
* * *
10843175 TTTTAAATAAAGCAATATTTTGAATATTTTTATATTATTTCATG-T-AATAAAA
1 TTTTAAATAAGGTAACATTTTGAATATTTTTATATTATTTCATGATAAATAAAA
10843227 TAGAAATAAT
Statistics
Matches: 176, Mismatches: 21, Indels: 55
0.70 0.08 0.22
Matches are distributed among these distances:
53 14 0.08
54 30 0.17
55 29 0.16
56 21 0.12
57 3 0.02
59 5 0.03
60 23 0.13
61 27 0.15
62 24 0.14
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.47
Consensus pattern (59 bp):
TTTTAAATAAGGTAACATTTTGAATATTTTTATATTATTTCATGATAAATAAAAGGTTG
Found at i:10846786 original size:126 final size:126
Alignment explanation
Indices: 10846240--10846778 Score: 828
Period size: 126 Copynumber: 4.3 Consensus size: 126
10846230 GCCCAAGTTA
* * *
10846240 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACTTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* * **
10846305 TGCATCTTGCTTGAAGTGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * * *
10846366 TTTCAGAGACCACTATAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
*
10846431 TGCATCCTGCTTGAAGCCTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * *
10846492 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAACTTCTTTCAGTATTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* ** *
10846557 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCATAGACATGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
10846618 TTCCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
10846683 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAAACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
10846744 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
10846779 AGAAGCTTTT
Statistics
Matches: 375, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 1 0.00
126 373 0.99
127 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:10847025 original size:96 final size:98
Alignment explanation
Indices: 10846880--10847055 Score: 241
Period size: 96 Copynumber: 1.8 Consensus size: 98
10846870 CTTAAAATCC
* ** * * *
10846880 TAATCTAATTTTTTTAAAATTTATAACTAATTTACTCAAGTAACCCTAAACTCTAATTTATTTGA
1 TAATCTAATTTTTTTAAAATTTATAACTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
10846945 -TTTTTTCCTTAAAAACTATAAACACTAAACCA
66 TTTTTTTCCTTAAAAACTATAAACACTAAACCA
* * *
10846977 TAATCTAA-TTTTTTAAAA-TTAGTAATTAATTTAATTAACAAACACTAAACCCTAATTTGTTTA
1 TAATCTAATTTTTTTAAAATTTA-TAACTAATTTAATCAACAAACACTAAACCCTAATTTATTTA
10847040 ATTTTTTTCCTTAAAA
65 ATTTTTTTCCTTAAAA
10847056 CCTTAAAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 3 0.04
96 43 0.63
97 22 0.32
ACGTcount: A:0.40, C:0.14, G:0.02, T:0.43
Consensus pattern (98 bp):
TAATCTAATTTTTTTAAAATTTATAACTAATTTAATCAACAAACACTAAACCCTAATTTATTTAA
TTTTTTTCCTTAAAAACTATAAACACTAAACCA
Found at i:10865332 original size:25 final size:25
Alignment explanation
Indices: 10865277--10865325 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
10865267 TTATACATAC
* *
10865277 AAAATTTAAGTTGAAAGTTTATTTG
1 AAAATTTAAGTTAAAAATTTATTTG
10865302 AAAATTTGAAGTTAAAAATTTATT
1 AAAATTT-AAGTTAAAAATTTATT
10865326 AATAATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (25 bp):
AAAATTTAAGTTAAAAATTTATTTG
Found at i:10867434 original size:20 final size:18
Alignment explanation
Indices: 10867376--10867438 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
10867366 GTGTGTAAAG
*
10867376 TATTT-ATAATTATAAATT
1 TATTTAATAAATA-AAATT
*
10867394 T-TTTAATAAATAAATTT
1 TATTTAATAAATAAAATT
10867411 TATTTAATAAAATAAAAATT
1 TATTTAAT-AAAT-AAAATT
10867431 TATTTAAT
1 TATTTAAT
10867439 TTTTAAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
17 8 0.21
18 13 0.34
19 4 0.11
20 13 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTAATAAATAAAATT
Found at i:10868288 original size:43 final size:43
Alignment explanation
Indices: 10868232--10868319 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
10868222 ATCTAATAAT
* *
10868232 AAATATATAATTATATATTTTTTAAAAAT-ATGTCTTAAAATTA
1 AAATATATAATTAT-TATTGTATAAAAATAATGTCTTAAAATTA
* * * *
10868275 AAATATTTTATTATTATTGTATAAAAATAATTTCTTAAACTTA
1 AAATATATAATTATTATTGTATAAAAATAATGTCTTAAAATTA
10868318 AA
1 AA
10868320 TTATGTATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 12 0.32
43 26 0.68
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (43 bp):
AAATATATAATTATTATTGTATAAAAATAATGTCTTAAAATTA
Found at i:10869236 original size:20 final size:22
Alignment explanation
Indices: 10869211--10869251 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
10869201 ACTTCAACTA
10869211 CTTAATATATT-TA-TGTATTT
1 CTTAATATATTATATTGTATTT
10869231 CTTAATATATTATATTGTATT
1 CTTAATATATTATATTGTATT
10869252 AGTATATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 2 0.11
22 6 0.32
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (22 bp):
CTTAATATATTATATTGTATTT
Found at i:10872551 original size:16 final size:17
Alignment explanation
Indices: 10872532--10872572 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
10872522 AAATTCAACG
10872532 ATTAAATAAT-TAAAAT
1 ATTAAATAATATAAAAT
10872548 ATT-AATAATATAAAAT
1 ATTAAATAATATAAAAT
*
10872564 ATTATATAA
1 ATTAAATAA
10872573 AAATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 6 0.27
16 12 0.55
17 4 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTAAATAATATAAAAT
Found at i:10887590 original size:35 final size:35
Alignment explanation
Indices: 10887542--10887664 Score: 156
Period size: 35 Copynumber: 3.5 Consensus size: 35
10887532 GTTCACACCT
**
10887542 CATACCTACGTTTCTTAACTCAGTATGGATAATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
* * *
10887577 CATACCTATGTTTCACAACTCATTATGGTTAATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
* *
10887612 CATACCTACGTATCACAACTCAGTATGGATGATAC
1 CATACCTACGTTTCACAACTCAGTATGGATAATAC
* * *
10887647 CATATCTGCATTTCACAA
1 CATACCTACGTTTCACAA
10887665 TTTTGCCATG
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 74 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (35 bp):
CATACCTACGTTTCACAACTCAGTATGGATAATAC
Found at i:10888915 original size:8 final size:8
Alignment explanation
Indices: 10888893--10888922 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
10888883 AAATTGTTTT
10888893 AATTCACC
1 AATTCACC
10888901 AAATTCACC
1 -AATTCACC
10888910 AATTCACC
1 AATTCACC
10888918 AATTC
1 AATTC
10888923 TTCTAAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (8 bp):
AATTCACC
Found at i:10891237 original size:12 final size:12
Alignment explanation
Indices: 10891220--10891246 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10891210 CCTCGAGGAT
10891220 AAAAAAAAAAAC
1 AAAAAAAAAAAC
10891232 AAAAAAAAAAAC
1 AAAAAAAAAAAC
10891244 AAA
1 AAA
10891247 GAAGAAGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:10896519 original size:44 final size:45
Alignment explanation
Indices: 10896456--10896547 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 45
10896446 CCTTAGTCAA
10896456 GTATTATTGTTAGCTAGGACAACAATAATGCATTAAGACTAAC-T
1 GTATTATTGTTAGCTAGGACAACAATAATGCATTAAGACTAACAT
*
10896500 GTATTATTGTTGGCTAGGACAACAATAATGCATTAAGACTAACAT
1 GTATTATTGTTAGCTAGGACAACAATAATGCATTAAGACTAACAT
10896545 GTA
1 GTA
10896548 GTTGATTGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 42 0.91
45 4 0.09
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (45 bp):
GTATTATTGTTAGCTAGGACAACAATAATGCATTAAGACTAACAT
Found at i:10898927 original size:46 final size:46
Alignment explanation
Indices: 10898877--10899049 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
10898867 TGGTTGAGCA
10898877 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
10898923 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * **
10898968 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATCCGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
10899016 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
10899050 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:10899033 original size:93 final size:93
Alignment explanation
Indices: 10898874--10899044 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
10898864 GGATGGTTGA
* * * *
10898874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAACGCCCGAACTCGTTGAGT
10898939 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
10898967 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATCCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAACGCCCGAACTCGTTGAGT
10899032 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
10899045 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATCCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.