Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 311 of 356
Found at i:101003913 original size:3 final size:3
Alignment explanation
Indices: 101003905--101004015 Score: 59
Period size: 3 Copynumber: 36.7 Consensus size: 3
101003895 AAAGTAGTGC
* * *
101003905 TAA TAA TAA TAA TAA TAA TAA T-C TAT TAA GTTA TAA TGAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA
* * * * *
101003950 TGA TAA TGA TGA T-A TAT TAGA TAA TAA TAG TAA -AA TAA TAA GTAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA -TAA
* *
101003995 CAA TAA TAAA TTA TAA TAA TA
1 TAA TAA T-AA TAA TAA TAA TA
101004016 GTGATGAGAA
Statistics
Matches: 83, Mismatches: 16, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
2 7 0.08
3 64 0.77
4 12 0.14
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:101004034 original size:16 final size:16
Alignment explanation
Indices: 101004015--101004046 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101004005 TTATAATAAT
101004015 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
101004031 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
101004047 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:101004180 original size:16 final size:15
Alignment explanation
Indices: 101004151--101004193 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
101004141 TATACGTATG
*
101004151 AAAAATAATGATAGT
1 AAAAATAATAATAGT
101004166 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
101004182 AATAATAATAAT
1 AAAAATAATAAT
101004194 GGAGTGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:101004296 original size:3 final size:3
Alignment explanation
Indices: 101004288--101004338 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
101004278 ACACTACCAT
*
101004288 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101004336 ATA
1 ATA
101004339 TTAAAATGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:101004864 original size:27 final size:27
Alignment explanation
Indices: 101004793--101004877 Score: 113
Period size: 27 Copynumber: 3.1 Consensus size: 27
101004783 TGATTTTTTG
*
101004793 TTCTTGAATCTCAAAAAAAGAAAAATCCCC
1 TTCTTGAATCTC-AAAAAA-AAAAAT-CTC
101004823 TT-TTGAATCTC--AAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAATCTC
101004847 TTCTTGAATCTCAAAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAATCTC
101004874 TTCT
1 TTCT
101004878 CTCCAAAATA
Statistics
Matches: 51, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
24 4 0.08
25 15 0.29
26 4 0.08
27 17 0.33
29 9 0.18
30 2 0.04
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.31
Consensus pattern (27 bp):
TTCTTGAATCTCAAAAAAAAAAATCTC
Found at i:101005370 original size:44 final size:44
Alignment explanation
Indices: 101005306--101005487 Score: 201
Period size: 44 Copynumber: 4.2 Consensus size: 44
101005296 TGAGTTTTTG
*
101005306 ATCTGCT-TCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
* * *
101005349 ATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAGGGATTCC--
1 ATCTGCTATCTTCGATC-TGTTCCCCATAAGCACAGGGATGCCAA
** * * * * *
101005391 ATGCTGAAATTTTCGATCTGCTTCACCATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCCATAAGCACAGGGATGCCAA
*
101005437 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
101005481 ATCTGCT
1 ATCTGCT
101005488 GTTTTTAACT
Statistics
Matches: 111, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
42 2 0.02
43 19 0.17
44 74 0.67
45 14 0.13
46 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCCATAAGCACAGGGATGCCAA
Found at i:101006012 original size:205 final size:205
Alignment explanation
Indices: 101005644--101006542 Score: 1494
Period size: 205 Copynumber: 4.4 Consensus size: 205
101005634 TGGGAACATC
* * * * * *
101005644 TGAAAGTCAAATCTGCTATGTTTTCGATTTGTTCTTTGTAAGCACAAGGATGCCAAATCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* * * * * **
101005709 GATCTTGCTTTAGT-ATAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCATTGAAGTG
66 GATC-TGCTTCAGTGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
* * *
101005773 GAGATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACTACAAATCATCTTAGATTTGCTTC
129 AAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
101005838 ATCGTAATCACG
194 ATCGTAATCACG
* *
101005850 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* *
101005915 GATCTGCTTCAGTGAAATCATCTGAAGGCGAGATCTACTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
* *
101005980 GATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGAGTTGCTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
101006045 CGTAATCACG
196 CGTAATCACG
*
101006055 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTA
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* *
101006120 GATCTGCTTCAGTGTAATCATCTGAAGGTGGGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
*
101006185 GATGCCAAACTTCGATTTGTTATCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
101006250 CGTAATCACG
196 CGTAATCACG
*
101006260 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
* * *
101006325 GATCTGCTTTAGTGGAATCATCTGAAGGTGAGATATGCTATGTGTCTGCTCTCCATCAAAGTGAA
66 GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
101006390 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
101006455 CGTAATCACG
196 CGTAATCACG
*
101006465 TGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTG
1 TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
101006530 GATCTGCTTCAGT
66 GATCTGCTTCAGT
101006543 ATAACATCTG
Statistics
Matches: 654, Mismatches: 38, Indels: 3
0.94 0.05 0.00
Matches are distributed among these distances:
205 590 0.90
206 64 0.10
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
TGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTG
GATCTGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
CGTAATCACG
Found at i:101014521 original size:13 final size:15
Alignment explanation
Indices: 101014491--101014521 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
101014481 TTCCAGATTT
101014491 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
101014506 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
101014521 T
1 T
101014522 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:101014607 original size:15 final size:14
Alignment explanation
Indices: 101014565--101014614 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
101014555 ATAATTTTGA
*
101014565 ATGCAAATGATGTG
1 ATGCAAATGATGAG
101014579 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
101014594 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
101014608 ATGCAAA
1 ATGCAAA
101014615 AGAATATCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:101017588 original size:35 final size:35
Alignment explanation
Indices: 101017544--101017710 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
101017534 TCCTTATTGA
** *
101017544 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
101017579 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
101017619 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
101017654 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
101017689 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
101017711 CTTTTCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:101017627 original size:75 final size:73
Alignment explanation
Indices: 101017539--101017710 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
101017529 GGTTTTCCTT
** * * **
101017539 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
101017603 TCAGTATGG
65 TCAGTATGG
*
101017612 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
101017677 CTCAGTATGG
64 CTCAGTATGG
101017687 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
101017711 CTTTTCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:101018979 original size:25 final size:25
Alignment explanation
Indices: 101018951--101019007 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
101018941 TAATTTCACC
101018951 ATTTCACAAATTCTTCTAAATTCTT
1 ATTTCACAAATTCTTCTAAATTCTT
101018976 ATTTCACAAATTCTTCTAAATTCTT
1 ATTTCACAAATTCTTCTAAATTCTT
*
101019001 ACTTCAC
1 ATTTCAC
101019008 CCATAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTCACAAATTCTTCTAAATTCTT
Found at i:101020413 original size:3 final size:3
Alignment explanation
Indices: 101020399--101020643 Score: 64
Period size: 3 Copynumber: 83.0 Consensus size: 3
101020389 AAAGGAAAAT
* * * * * *
101020399 ATA ATA ACA ATA ATA A-A AAA AT- ACA ACA ATA ATA ATA GTA A-A AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * **
101020444 TATA ATA A-C ATA ATA AT- ATA ATA GTA ATA GTA ACA AT- ATG ACG
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
101020487 ATA ATA GTA AAA ATA AT- ATA TTAA ATA ATA TTA ATA A-A AGTA GTG
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA
* * * *
101020532 CTA ATA ATA ATA ATA ATA ATA AT- CTA TTA AGTT ATA ATGA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA AT-A ATA ATA
* * * * *
101020577 ATG ATA ATG ATG AT- ATA TTA GATA ATA ATA GTA A-A ATA ATA AGTA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA A-TA
* *
101020622 ACA ATA ATAA ATT ATA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA
101020644 GTGATGAGAA
Statistics
Matches: 174, Mismatches: 48, Indels: 40
0.66 0.18 0.15
Matches are distributed among these distances:
2 21 0.12
3 136 0.78
4 17 0.10
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:101020662 original size:16 final size:16
Alignment explanation
Indices: 101020643--101020674 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
101020633 TTATAATAAT
101020643 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
101020659 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
101020675 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:101020808 original size:16 final size:15
Alignment explanation
Indices: 101020779--101020821 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
101020769 TATACGCATG
*
101020779 AAAAATAATGATAGT
1 AAAAATAATAATAGT
101020794 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
101020810 AATAATAATAAT
1 AAAAATAATAAT
101020822 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:101020934 original size:3 final size:3
Alignment explanation
Indices: 101020919--101020948 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
101020909 CTACCATATT
*
101020919 ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
101020949 TTAAAATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:101021479 original size:30 final size:30
Alignment explanation
Indices: 101021403--101021481 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 30
101021393 TGATTTTTTG
*
101021403 TTCTTGAATCTCAAAAAAAAGAAAAATCCC
1 TTCTTGAATCTCAAAAAAAAAAAAAATCCC
* *
101021433 CTCTTGAATCTC----AAAAAAAAAATCTC
1 TTCTTGAATCTCAAAAAAAAAAAAAATCCC
*
101021459 TTCTTGAATATCAAAAAAAAAAA
1 TTCTTGAATCTCAAAAAAAAAAA
101021482 TCTCTTCTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
26 22 0.55
30 18 0.45
ACGTcount: A:0.52, C:0.18, G:0.05, T:0.25
Consensus pattern (30 bp):
TTCTTGAATCTCAAAAAAAAAAAAAATCCC
Found at i:101041246 original size:31 final size:31
Alignment explanation
Indices: 101041189--101041247 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
101041179 GTCCAAATTC
* * *
101041189 TAAAAATTTATAAATAAAATATTCAAAAATA
1 TAAAAATTTAGAAAAAAAATAATCAAAAATA
101041220 TAAAAA-TTAGAAAAAAAATCAATCAAAA
1 TAAAAATTTAGAAAAAAAAT-AATCAAAA
101041248 TCTAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (31 bp):
TAAAAATTTAGAAAAAAAATAATCAAAAATA
Found at i:101045586 original size:28 final size:28
Alignment explanation
Indices: 101045550--101045623 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
101045540 ATATATACAC
* ***
101045550 AATTTGCACACTTAGTGCTCAATATTTA
1 AATTCGCACACTTAGTGCTCAATAACCA
101045578 AATTCGCACACTTAGTGCTCAATAACCA
1 AATTCGCACACTTAGTGCTCAATAACCA
*
101045606 CATTCGCACACTTAGTGC
1 AATTCGCACACTTAGTGC
101045624 AAGATTCACA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
AATTCGCACACTTAGTGCTCAATAACCA
Found at i:101052853 original size:23 final size:23
Alignment explanation
Indices: 101052827--101052872 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
101052817 TACACTTAAA
101052827 ATGGTCAAGATATATCGCACTAT
1 ATGGTCAAGATATATCGCACTAT
101052850 ATGGTCAAGATATATCGCACTAT
1 ATGGTCAAGATATATCGCACTAT
101052873 CACAAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (23 bp):
ATGGTCAAGATATATCGCACTAT
Found at i:101054449 original size:65 final size:65
Alignment explanation
Indices: 101054339--101054466 Score: 184
Period size: 65 Copynumber: 2.0 Consensus size: 65
101054329 CAAGCGAGCT
* * **
101054339 TAACAGGACGCTCATAAAGAGTTGCGTTTATGTCCGCAATGTATGCAAGATCACAACCGATCGCA
1 TAACAGGACGCTCACAAAGAGCTGCGTTTATGTCCGCAACATATGCAAGATCACAACCGATCGCA
* * * *
101054404 TAACAGGACGCTCACAAATAGCTGCGTTTGTGTCCGCAACATATGCAGGATCACAATCGATCG
1 TAACAGGACGCTCACAAAGAGCTGCGTTTATGTCCGCAACATATGCAAGATCACAACCGATCG
101054467 AATCATGTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (65 bp):
TAACAGGACGCTCACAAAGAGCTGCGTTTATGTCCGCAACATATGCAAGATCACAACCGATCGCA
Found at i:101058405 original size:19 final size:20
Alignment explanation
Indices: 101058389--101058434 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
101058379 AGATTTATCA
*
101058389 ATAATTTATTA-TATTATTC
1 ATAATATATTACTATTATTC
101058408 ATAATATATTACTATT-TT-
1 ATAATATATTACTATTATTC
101058426 ATAAT-TATT
1 ATAATATATT
101058435 TATAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 5 0.20
19 12 0.48
20 4 0.16
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATATATTACTATTATTC
Found at i:101059044 original size:27 final size:28
Alignment explanation
Indices: 101058980--101059044 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
101058970 GTGAATGAAT
*
101058980 AATTAATTTTTTTTAAGAATGAAATAATT
1 AATTAA-TTTTTTTAAGAATGAAATAATC
* * *
101059009 AATT-TTTTTTTTAAGAATG-ATTGATC
1 AATTAATTTTTTTAAGAATGAAATAATC
101059035 AATTAATTTT
1 AATTAATTTT
101059045 ATCTTATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 8 0.27
27 18 0.60
29 4 0.13
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (28 bp):
AATTAATTTTTTTAAGAATGAAATAATC
Found at i:101059044 original size:30 final size:27
Alignment explanation
Indices: 101058972--101059028 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
101058962 AGATATAAGT
101058972 GAATG-AATAATTAA--TTTTTTTTAA
1 GAATGAAATAATTAATTTTTTTTTTAA
101058996 GAATGAAATAATTAATTTTTTTTTTAA
1 GAATGAAATAATTAATTTTTTTTTTAA
101059023 GAATGA
1 GAATGA
101059029 TTGATCAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 5 0.17
25 9 0.30
27 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (27 bp):
GAATGAAATAATTAATTTTTTTTTTAA
Found at i:101069641 original size:6 final size:6
Alignment explanation
Indices: 101069624--101069664 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
101069614 TCTGTTACAA
* * *
101069624 CATCCT CTTCCT CATCCT CATCCT CGTCCT CGTCCT CATCC
1 CATCCT CATCCT CATCCT CATCCT CATCCT CATCCT CATCC
101069665 GTTAAAGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.10, C:0.51, G:0.05, T:0.34
Consensus pattern (6 bp):
CATCCT
Found at i:101069647 original size:18 final size:18
Alignment explanation
Indices: 101069624--101069664 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
101069614 TCTGTTACAA
*
101069624 CATCCTCTTCCTCATCCT
1 CATCCTCGTCCTCATCCT
*
101069642 CATCCTCGTCCTCGTCCT
1 CATCCTCGTCCTCATCCT
101069660 CATCC
1 CATCC
101069665 GTTAAAGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.51, G:0.05, T:0.34
Consensus pattern (18 bp):
CATCCTCGTCCTCATCCT
Found at i:101069924 original size:3 final size:3
Alignment explanation
Indices: 101069916--101069956 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
101069906 ATCACATGTT
101069916 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
101069957 TGGATGTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:101074295 original size:3 final size:3
Alignment explanation
Indices: 101074287--101074339 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
101074277 ATCACATGTT
101074287 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
101074335 TTA TT
1 TTA TT
101074340 TGGATGTAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:101076379 original size:12 final size:12
Alignment explanation
Indices: 101076362--101076391 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
101076352 ATTTAGTTTG
101076362 TTTATATTATTT
1 TTTATATTATTT
101076374 TTTATATTATTT
1 TTTATATTATTT
*
101076386 TATATA
1 TTTATA
101076392 AAAATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTATATTATTT
Found at i:101076430 original size:25 final size:26
Alignment explanation
Indices: 101076397--101076461 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 26
101076387 ATATAAAAAT
*
101076397 AAATTTTAAAAATATAAT-ATTTTGA
1 AAATATTAAAAATATAATAATTTTGA
*
101076422 AAATATT-AAAATA-AATAATTTTTA
1 AAATATTAAAAATATAATAATTTTGA
101076446 ATAA-ATTAAAAATATA
1 A-AATATTAAAAATATA
101076462 TTAAAAATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 3 0.09
24 16 0.47
25 14 0.41
26 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (26 bp):
AAATATTAAAAATATAATAATTTTGA
Found at i:101076439 original size:26 final size:23
Alignment explanation
Indices: 101076397--101076457 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 23
101076387 ATATAAAAAT
* *
101076397 AAATTTTAAAAATATAATATTTTGA
1 AAATATTAAAAAAATAAT-TTTT-A
101076422 AAATATTAAAATAAATAATTTTTA
1 AAATATTAAAA-AAATAATTTTTA
101076446 ATAA-ATTAAAAA
1 A-AATATTAAAAA
101076458 TATATTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 1 0.03
24 9 0.28
25 16 0.50
26 6 0.19
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
AAATATTAAAAAAATAATTTTTA
Found at i:101077946 original size:18 final size:19
Alignment explanation
Indices: 101077925--101077978 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 19
101077915 AATAGGGGTG
101077925 ATAATTATAATAATAATA-
1 ATAATTATAATAATAATAC
*
101077943 ATAA-TATAAACAATAATAC
1 ATAATTAT-AATAATAATAC
101077962 ATATATATATAATAATA
1 ATA-AT-TATAATAATA
101077979 GTAGTCAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
17 3 0.10
18 13 0.45
19 3 0.10
20 1 0.03
21 6 0.21
22 3 0.10
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATTATAATAATAATAC
Found at i:101078066 original size:3 final size:3
Alignment explanation
Indices: 101078053--101078132 Score: 51
Period size: 3 Copynumber: 26.3 Consensus size: 3
101078043 GAGGGCATAT
**
101078053 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA ATA
* *
101078100 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
101078133 AACAAAGCTC
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
2 8 0.13
3 42 0.70
4 9 0.15
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:101078075 original size:12 final size:12
Alignment explanation
Indices: 101078051--101078133 Score: 69
Period size: 12 Copynumber: 6.6 Consensus size: 12
101078041 GAGAGGGCAT
101078051 ATATAATATAATA
1 ATATAA-ATAATA
101078064 ATATAAATAATA
1 ATATAAATAATA
**
101078076 ATATATACATGAGGA
1 ATATA-A-AT-AATA
101078091 ATA-ATAATAATA
1 ATATA-AATAATA
101078103 ATATAAATAATA
1 ATATAAATAATA
* *
101078115 GTAAAAATAATA
1 ATATAAATAATA
*
101078127 AAATAAA
1 ATATAAA
101078134 ACAAAGCTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
12 37 0.65
13 10 0.18
14 5 0.09
15 5 0.09
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:101078123 original size:27 final size:27
Alignment explanation
Indices: 101078051--101078131 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
101078041 GAGAGGGCAT
* *
101078051 ATATAATATAATAATATAAATAATAAT-
1 ATATAA-ATAATAGTAAAAATAATAATA
* * * *
101078078 ATATACAT--GAGGAATAATAATAATA
1 ATATAAATAATAGTAAAAATAATAATA
101078103 ATATAAATAATAGTAAAAATAATAA-A
1 ATATAAATAATAGTAAAAATAATAATA
101078129 ATA
1 ATA
101078132 AAACAAAGCT
Statistics
Matches: 41, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
24 11 0.27
25 7 0.17
26 6 0.15
27 17 0.41
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (27 bp):
ATATAAATAATAGTAAAAATAATAATA
Found at i:101078552 original size:13 final size:13
Alignment explanation
Indices: 101078534--101078618 Score: 87
Period size: 13 Copynumber: 7.2 Consensus size: 13
101078524 AGTGGTTGGG
101078534 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
*
101078547 GTGGTTTAGTGTA
1 GTGGTTTAGTGGA
101078560 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
101078573 GTGG--T--TGGA
1 GTGGTTTAGTGGA
* *
101078582 ATGGTTTAGTAGA
1 GTGGTTTAGTGGA
101078595 GTGG--T--TGGA
1 GTGGTTTAGTGGA
101078604 GTGGTTTAGTGGA
1 GTGGTTTAGTGGA
101078617 GT
1 GT
101078619 AAAGTTATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
9 14 0.24
11 4 0.07
13 40 0.69
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (13 bp):
GTGGTTTAGTGGA
Found at i:101078552 original size:22 final size:22
Alignment explanation
Indices: 101078524--101078618 Score: 127
Period size: 22 Copynumber: 4.1 Consensus size: 22
101078514 AGGCAAGTAA
*
101078524 AGTGGTTGGGGTGGTTTAGTGG
1 AGTGGTTGGAGTGGTTTAGTGG
101078546 AGTGGTTTAGTGTAGTGGTTTAGTGG
1 AGTGG-TT-G-G-AGTGGTTTAGTGG
* *
101078572 AGTGGTTGGAATGGTTTAGTAG
1 AGTGGTTGGAGTGGTTTAGTGG
101078594 AGTGGTTGGAGTGGTTTAGTGG
1 AGTGGTTGGAGTGGTTTAGTGG
101078616 AGT
1 AGT
101078619 AAAGTTATTT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
22 39 0.61
23 3 0.05
24 2 0.03
25 3 0.05
26 17 0.27
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (22 bp):
AGTGGTTGGAGTGGTTTAGTGG
Found at i:101078948 original size:44 final size:44
Alignment explanation
Indices: 101078883--101080014 Score: 719
Period size: 44 Copynumber: 25.7 Consensus size: 44
101078873 TTGATCTGCT
* * * *
101078883 TCTTCGACCTGTTCCCCATAAACACAGGGATGTCAAATCTACTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * **
101078927 TCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAAATCTGTTA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * *
101078971 TCTTC-AACTTGTTCCCTATAAGCACAGGGAT-TC-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * *
101079014 TCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTC-CCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079059 TCTTC-AACTTGTTCCCTATAAGCACAAGGATGCCAAATCTACTG
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * * *
101079103 TTTTC-AACTTGCTCCCTATAAGCACAGGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
** * * *
101079146 TCTTCGATCTGCTTAACTGTAAGCACAGGAATGTCAAATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * *
101079191 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
** * * *
101079235 T-TTTTAACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * * *
101079278 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079323 TCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079367 TTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * * *
101079410 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * ** *
101079455 TCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGTTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * * *
101079499 TTTTC-AACTTGTTCCCTATAAGCACAAGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * * *
101079542 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* *
101079587 TCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079631 TCTTC-AACTTGTTCCCTATAAGCACAGGAATGTCAGATCTATTA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * * *
101079675 TCTTCGATCTGTTTCCTATAAGCACGGGGATGCCAAATCTGCTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079719 TTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * * *
101079762 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079807 TCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTG
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079851 TTTTC-AACTTGTTCCCTATAAGCACAGGGATG-C-CATGCTGA-AA
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATGTCAAAT-CT-ACTA
* * * * * ** *
101079894 TCTTCGATCTGCTTCACTGTAAGCATAGGAATGTTAGGTCTATTA
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTACTA
* * * *
101079939 TCTTCGATCTATTCCCTATAAGCACAAGGATGCCAAATCTGCTA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
* *
101079983 TTTTC-AACTTGTTCCCTATAAGCACAGGGATG
1 TCTTCGATC-TGTTCCCTATAAGCACAGGGATG
101080015 CCATGCTGAA
Statistics
Matches: 841, Mismatches: 186, Indels: 122
0.73 0.16 0.11
Matches are distributed among these distances:
42 14 0.02
43 82 0.10
44 630 0.75
45 102 0.12
46 13 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTACTA
Found at i:101079142 original size:132 final size:132
Alignment explanation
Indices: 101078905--101079753 Score: 1260
Period size: 132 Copynumber: 6.4 Consensus size: 132
101078895 TCCCCATAAA
* * * * * * *
101078905 CACAGGGATGTCAAATCTACTGTCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAAATCTGT
1 CACAGGAATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGC
* * * *
101078969 TATCTTCAACTTGTTCCCTATAAGCACAGGGATTCCATGCTGAAATCTTCGATCTGCTTCACCGT
65 TGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGT
101079034 AAG
130 AAG
* * *
101079037 CACAGGAATGTCAGATCTGCTATCTTC-AACTTGTTCCCTATAAGCACAAGGATGCCAAATCTAC
1 CACAGGAATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAATCTGC
* *
101079101 TGTTTTCAACTTGCTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTAACTGT
65 TGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGT
101079166 AAG
130 AAG
*
101079169 CACAGGAATGTCAAATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
1 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
*
101079234 GTTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
66 GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
101079299 AG
131 AG
*
101079301 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCT
1 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
101079366 GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
66 GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
101079431 AG
131 AG
** * *
101079433 CACAGGAATGTCAGATCTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGTT
1 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
*
101079498 GTTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
66 GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
101079563 AG
131 AG
101079565 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
1 CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
* * * * * *
101079630 ATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCA-GATCT-ATTATCTTCGATCTGTTTC-CT
66 GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG--CTGA-AATCTTCGATCTGCTTCACT
*
101079692 ATAAG
128 GTAAG
* * * * * * *
101079697 CACGGGGATGCCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCA
1 CACAGGAATGTCAGATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCA
101079754 TGCTGAAATC
Statistics
Matches: 663, Mismatches: 49, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
131 3 0.00
132 641 0.97
133 19 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (132 bp):
CACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCT
GTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTA
AG
Found at i:101079567 original size:352 final size:351
Alignment explanation
Indices: 101079190--101080010 Score: 1263
Period size: 352 Copynumber: 2.3 Consensus size: 351
101079180 CAAATCTGCT
* * * * * *
101079190 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTTAA-CTTGTTCCCTA
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGCCAAATCTGCTATCTTCAATC-TGTTCCCTA
* *
101079253 TAAGCACAGGGATGCC-ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCAGA
65 TAAGCACAGGGATGCCAAT-CTGAAATCTTCAACT-TG-TTCACTATAAGCACAGGAATGTCAGA
*
101079316 TCTGCTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTC
127 TCTACTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTC
101079381 CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
192 CCTATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCA
*
101079446 GATCTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGT
257 GATCTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGT
101079511 TCCCTATAAGCACAAGGATGCCATGCTGAA
322 TCCCTATAAGCACAAGGATGCCATGCTGAA
* * *
101079541 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
** *
101079606 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCAGATCT
66 AAGCACAGGGATGCC-AATCTGAAATCTTCAACTTGTTCACTATAAGCACAGGAATGTCAGATCT
* *
101079671 ATTATCTTCGATCTGTTTCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCT
130 ACTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCT
101079736 ATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGAT
195 ATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGAT
101079801 CTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCC
260 CTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCC
*
101079866 CTATAAGCACAGGGATGCCATGCTGAA
325 CTATAAGCACAAGGATGCCATGCTGAA
* ** ** ** * *
101079893 ATCTTCGATCTGCTTCACTGTAAGCATAGGAATGTTAGGTCTATTATCTTCGATCTATTCCCTAT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
* ** * *
101079958 AAGCACAAGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGG
66 AAGCACAGGGATGCC-AATCTGAAATCTTCAACTTGTTCACTATAAGCACAGG
101080011 GATGCCATGC
Statistics
Matches: 438, Mismatches: 27, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
351 12 0.03
352 410 0.94
353 13 0.03
354 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (351 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGCCAAATCTGCTATCTTCAATCTGTTCCCTAT
AAGCACAGGGATGCCAATCTGAAATCTTCAACTTGTTCACTATAAGCACAGGAATGTCAGATCTA
CTATCTTCGATCTGTTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
TAAGCACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATC
TATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCC
TATAAGCACAAGGATGCCATGCTGAA
Found at i:101079659 original size:220 final size:220
Alignment explanation
Indices: 101078883--101079878 Score: 915
Period size: 220 Copynumber: 4.5 Consensus size: 220
101078873 TTGATCTGCT
* * * * * * *
101078883 TCTTCGACCTG-TTCCCCATAAACACAGGGATGTCAAATCTACTGTCTTC-AACTTGTTCCCTAT
1 TCTTCGATCTGCTTCACTATAAGCACAGGGATGTCAAATCTGCTATCTTCGATC-TGTTCCCTAT
* * * *
101078946 AAACACAGGGATGCCAAATCTGTTATCTTCAACTTGTTCCCTATAAGCACAGGGAT-TC-CATGC
65 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCAGAT-C
* * * * *
101079009 TGA-AATCTTCGATCTGCTTCACC-GTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTT
129 T-ATTATCTTCGATCTG-TTC-CCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
**
101079072 CCCTATAAGCACAAGGATGCCAAAT-CT-ACTG
191 CCCTATAAGCACAAGGATGCC--ATGCTGA-AA
* * * * ** **
101079103 TTTTC-AACTTGC-TCCCTATAAGCACAGGGATG-C-CATGCTGAAATCTTCGATCTGCTTAACT
1 TCTTCGATC-TGCTTCACTATAAGCACAGGGATGTCAAAT-CTGCTATCTTCGATCTG-TTCCCT
* * * * * * *
101079164 GTAAGCACAGGAATGTCAAATCTGCTATCTTCGA-TCTGTTCCCTATAAGCACAGGGATGCCAAA
63 ATAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-TGTTCCCTATAAGCACAGGAATGTCAGA
** * ** * ** *
101079228 TCTGCTGT-TTTTAACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTG
127 TCTATTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTATCTTCAACT-TG
* * * **
101079289 CTTCACTGTAAGCAC-AGGAATGTCA-GATCTGCTA
189 -TTCCCTATAAGCACAAGG-ATGCCATG--CTGAAA
* * * * * *
101079323 TCTTCGATCTG-TTCCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTC-AACTTGTTCCCTAT
1 TCTTCGATCTGCTTCACTATAAGCACAGGGATGTCAAATCTGCTATCTTCGATC-TGTTCCCTAT
** * * *
101079386 AAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCAGA
65 AAGCACAGGGATGCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAGCACAGGAATGTCAGA
* * * *
101079448 TCTATTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTC
127 TCTATTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTC
101079513 CCTATAAGCACAAGGATGCCATGCTGAAA
192 CCTATAAGCACAAGGATGCCATGCTGAAA
* * *
101079542 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTATA
1 TCTTCGATCTGCTTCACTATAAGCACAGGGATGTCAAATCTGCTATCTTCGATCTGTTCCCTATA
101079607 AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCAGATCTA
66 AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCAGATCTA
* * * *
101079672 TTATCTTCGATCTGTTTCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
131 TTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTA
*
101079737 TAAGCACAGGGATGCCATGCTGAAA
196 TAAGCACAAGGATGCCATGCTGAAA
* * * ** *
101079762 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGATCTATTCCCTATA
1 TCTTCGATCTGCTTCACTATAAGCACAGGGATGTCAAATCTGCTATCTTCGATCTGTTCCCTATA
* *
101079827 AGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGG
66 AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGG
101079879 GATGCCATGC
Statistics
Matches: 640, Mismatches: 99, Indels: 74
0.79 0.12 0.09
Matches are distributed among these distances:
218 8 0.01
219 60 0.09
220 512 0.80
221 50 0.08
222 10 0.02
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (220 bp):
TCTTCGATCTGCTTCACTATAAGCACAGGGATGTCAAATCTGCTATCTTCGATCTGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCAGATCTA
TTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTA
TAAGCACAAGGATGCCATGCTGAAA
Found at i:101079787 original size:264 final size:262
Alignment explanation
Indices: 101078883--101080030 Score: 1241
Period size: 264 Copynumber: 4.4 Consensus size: 262
101078873 TTGATCTGCT
* * * * *
101078883 TCTTCGACCTGTTCCCCATAAACACAGGGATGTCAAATCTACTGTCTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * * *
101078948 ACACAGGGATGCCAAATCTGTTATCTTCAACTTGTTCCCTATAAGCACAGGGATTCCATGCTGAA
66 GCACAGGGATGCC-AATCTGATATCTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAA
*
101079013 ATCTTCGATCTGCTTCACCGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTAT
130 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTAT
* * * * * *
101079078 AAGCACAAGGATGCCAAATCTACTGTTTTCAACTTGCTCCCTATAAGCACAGGGATGCCATGCTG
195 AAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGCCATGCTG
101079143 AAA
260 AAA
** * * *
101079146 TCTTCGATCTGCTTAACTGTAAGCACAGGAATGTCAAATCTGCTATCTTCGA-TCTGTTCCCTAT
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACT-TGTTCCCTAT
* * * * *
101079210 AAGCACAGGGATGCCAAATCTGCTGTTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
64 AAGCACAGGGATGCC-AATCTGATATCTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
*
101079275 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCC
128 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCC
* * * *
101079339 TATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATG
192 TATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGCCATG
101079404 CTGAAA
257 CTGAAA
* * * * ** * *
101079410 TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTATTATCTTCGA-TCTATTCCCTAT
1 TCTTCGATCTG-TTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACT-TGTTCCCTAT
* * *
101079474 AAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
64 AAGCACAGGGATGCC-AATCTGATATCTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
*
101079539 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCCC
128 AAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACT-TGTTCCC
*
101079603 TATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGTCA-G
192 TATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGCCATG
*
101079667 ATCT-ATTA
257 --CTGA-AA
* * * * *
101079675 TCTTCGATCTGTTTCCTATAAGCACGGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTATAA
* * * * *
101079740 GCACAGGGATGCC-ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCAC-AGGAATGTCA-GAT
66 GCACAGGGATGCCAAT-CTGATATCTTCAACT-TG-TTCCCTATAAGCACAAGG-ATGCCATG--
* * * * * * * * *
101079801 CT-ATTATCTTCGATCT-ATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTT
125 CTGA-AATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTT
** * * * *
101079864 CCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCATAGGAAT
189 CCCTATAAGCACAGGGATGCCAAAT-CTGCTATCTTCAACT-TG-TTCCCTATAAGCACAGGAAT
** * *
101079926 GTTAGGTCT-ATTA
251 GCCATG-CTGA-AA
* * * *
101079939 TCTTCGATCTATTCCCTATAAGCACAAGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAA
1 TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTATAA
*
101080004 GCACAGGGATGCC-ATGCTGAAATCTTC
66 GCACAGGGATGCCAAT-CTGATATCTTC
101080031 GATCTGCTTC
Statistics
Matches: 787, Mismatches: 79, Indels: 37
0.87 0.09 0.04
Matches are distributed among these distances:
262 6 0.01
263 39 0.05
264 712 0.90
265 30 0.04
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (262 bp):
TCTTCGATCTGTTCCCTATAAGCACAGGGATGTCAAATCTGCTATCTTCAACTTGTTCCCTATAA
GCACAGGGATGCCAATCTGATATCTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTGAAA
TCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCAACTTGTTCCCTATA
AGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAGCACAGGAATGCCATGCTGA
AA
Found at i:101080523 original size:165 final size:165
Alignment explanation
Indices: 101080232--101080566 Score: 465
Period size: 165 Copynumber: 2.0 Consensus size: 165
101080222 TGCCAAACCA
* * * * * *
101080232 TCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATATGTCTGCCTTCCGTCTAA
1 TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTGCTATATGTCTACCCTCCATCTAA
* * *
101080297 ATGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAGATCATCTTAGATTTGC
66 ATGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
* *
101080362 TTCAACATAAACACGCGAAAGCTAAATCAACTATG
131 TTCAACATAAACACGCAAAAGCCAAATCAACTATG
* * * *
101080397 TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATC-GA
1 TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTGCTATATGTCTACCCTCCATCTAA
*
101080461 GTGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
66 ATGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATG-CCAAATCATCTTAGATTTG
* * * * *
101080526 CTTTAACGTAAGCACGTAAAAGCCAAATCAGCTATG
130 CTTCAACATAAACACGCAAAAGCCAAATCAACTATG
101080562 TCTTC
1 TCTTC
101080567 AATTTGCTCC
Statistics
Matches: 148, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
164 43 0.29
165 105 0.71
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (165 bp):
TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTGCTATATGTCTACCCTCCATCTAA
ATGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGC
TTCAACATAAACACGCAAAAGCCAAATCAACTATG
Found at i:101080622 original size:370 final size:371
Alignment explanation
Indices: 101080026--101080779 Score: 1312
Period size: 370 Copynumber: 2.0 Consensus size: 371
101080016 CATGCTGAAA
*
101080026 TCTTCGATCTGCTTCAGTATAAACATTTGAAGGTTGAATCTGCTATGTGTCTACCCTCCATCGAA
1 TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATCGAA
*
101080091 GTGGAGATACCAGGCTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
66 GTGGAGATACCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
* * *
101080156 CTTTAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAAG
131 CTTTAACGTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAACACAAAG
*
101080221 ATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTGCTATATGTCTGC
196 ATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATATGTCTGC
* * *
101080286 CTTCCGTCTAAATGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATGCCAGATCAT
261 CTTCCGTCGAAATGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCAT
*
101080351 CTTAGATTTGCTTCAACATAAACACGCGAAAGCTAAATCAACTATG
326 CTTAGATTTGCTTCAACATAAACACGCGAAAGCTAAACCAACTATG
101080397 TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATCG-A
1 TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATCGAA
*
101080461 GTGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
66 GTGGAGATACCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
*
101080526 CTTTAACGTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGG
131 CTTTAACGTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAACACAAAG
* *
101080591 ATGCCAAACTATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATGTGTCTGC
196 ATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATATGTCTGC
* *
101080656 CTTCTGTCGAAGTGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCAT
261 CTTCCGTCGAAATGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCAT
* * *
101080721 CTTAGATTTGCTTCAACGTAAACACGTGAAAGCTAAACCAGCTATG
326 CTTAGATTTGCTTCAACATAAACACGCGAAAGCTAAACCAACTATG
**
101080767 TCTTTAATCTGCT
1 TCTTCGATCTGCT
101080780 CTCCGCCTGA
Statistics
Matches: 362, Mismatches: 21, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
370 300 0.83
371 62 0.17
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (371 bp):
TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATCGAA
GTGGAGATACCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTG
CTTTAACGTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAACACAAAG
ATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATATGTCTGC
CTTCCGTCGAAATGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCAT
CTTAGATTTGCTTCAACATAAACACGCGAAAGCTAAACCAACTATG
Found at i:101080765 original size:205 final size:205
Alignment explanation
Indices: 101080397--101080780 Score: 572
Period size: 205 Copynumber: 1.9 Consensus size: 205
101080387 ATCAACTATG
* * *
101080397 TCTTCGATCTGCTTCAGTATAAACATTTAAAGGTTGAATCTGCTATGTGTCTACCCTCCATCGAG
1 TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTACTATGTGTCTACCCTCCATCGAG
*
101080462 TGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGCCCAAATCATCTTAGATTTGC
66 TGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGACCAAATCATCTTAGATTTGC
* * * *
101080527 TTTAACGTAAGCACGTAAAAGCCAAATCAGCTATGTCTTCAATTTGCTCCTTGTAAACACAAGGA
131 TTCAACGTAAACACGTAAAAGCCAAACCAGCTATGTCTTCAATCTGCTCCTTGTAAACACAAGGA
101080592 TGCCAAACTA
196 TGCCAAACTA
* * * * * **
101080602 TCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGGATCTACTATGTGTCTGCCTTCTGTCGAA
1 TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTACTATGTGTCTACCCTCCATCG-A
* *
101080667 GTGGAGATGCTAGACTTCGATTTGTTCTCTGACAATACAGAGAT-ACCAAATCATCTTAGATTTG
65 GTGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGACCAAATCATCTTAGATTTG
* * *
101080731 CTTCAACGTAAACACGTGAAAGCTAAACCAGCTATGTCTTTAATCTGCTC
130 CTTCAACGTAAACACGTAAAAGCCAAACCAGCTATGTCTTCAATCTGCTC
101080781 TCCGCCTGAT
Statistics
Matches: 158, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
205 115 0.73
206 43 0.27
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (205 bp):
TCTTCGATCTACTTCAGTATAAACATCTAAAGGTTGAATCTACTATGTGTCTACCCTCCATCGAG
TGGAGATGCCAGACTTCAATTTGTTCTCTGACAATACAGAGATGACCAAATCATCTTAGATTTGC
TTCAACGTAAACACGTAAAAGCCAAACCAGCTATGTCTTCAATCTGCTCCTTGTAAACACAAGGA
TGCCAAACTA
Found at i:101081042 original size:61 final size:64
Alignment explanation
Indices: 101080925--101081049 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
101080915 TCATGTATCC
101080925 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
101080989 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
101081050 TTATTGTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:101082182 original size:19 final size:20
Alignment explanation
Indices: 101082160--101082208 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
101082150 TTTTTCCGCC
101082160 TTTTTTTTTAATTTTTTGT-
1 TTTTTTTTTAATTTTTTGTA
*
101082179 TTTTTGTTTT-GTTTTTTGTA
1 TTTTT-TTTTAATTTTTTGTA
*
101082199 TGTTTTTTTA
1 TTTTTTTTTA
101082209 GGGCTCTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.08, C:0.00, G:0.10, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTAATTTTTTGTA
Found at i:101082188 original size:12 final size:12
Alignment explanation
Indices: 101082173--101082206 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
101082163 TTTTTTAATT
101082173 TTTTGTTTTTTG
1 TTTTGTTTTTTG
101082185 TTTTGTTTTTTG
1 TTTTGTTTTTTG
*
101082197 -TATGTTTTTT
1 TTTTGTTTTTT
101082207 TAGGGCTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.03, C:0.00, G:0.15, T:0.82
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:101085468 original size:19 final size:19
Alignment explanation
Indices: 101085444--101085489 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
101085434 GTGAAAGTTC
101085444 AATGCAAATGT-TGCAATG
1 AATGCAAATGTATGCAATG
*
101085462 TAATGCAAATGTATGGAATG
1 -AATGCAAATGTATGCAATG
101085482 AATGCAAA
1 AATGCAAA
101085490 AGAAAGGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.43, C:0.09, G:0.22, T:0.26
Consensus pattern (19 bp):
AATGCAAATGTATGCAATG
Found at i:101088068 original size:23 final size:23
Alignment explanation
Indices: 101088042--101088090 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
101088032 ACAATACTAT
101088042 ATATA-AATATATATATACATAA-A
1 ATATACAATA-ATATATA-ATAATA
*
101088065 ATATACACTAATATATAATAATA
1 ATATACAATAATATATAATAATA
101088088 ATA
1 ATA
101088091 GTAATAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
23 16 0.70
24 3 0.13
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (23 bp):
ATATACAATAATATATAATAATA
Found at i:101088179 original size:3 final size:3
Alignment explanation
Indices: 101088171--101088221 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
101088161 AATAGGGGTG
*
101088171 ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA CATA TATA TATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA ATA
101088219 ATA
1 ATA
101088222 GTAGTCAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:101088309 original size:3 final size:3
Alignment explanation
Indices: 101088296--101088375 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
101088286 GAGGGCATAT
101088296 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA CATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
101088340 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
101088376 AAAAATAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
2 9 0.14
3 42 0.67
4 10 0.16
5 2 0.03
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:101088322 original size:18 final size:18
Alignment explanation
Indices: 101088292--101088371 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
101088282 TGGAGAGGGC
101088292 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
101088310 ATATAAATAATAATACATA
1 ATATAAATAATAATA-ATA
* *
101088329 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
101088346 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
101088364 ATAATAAA
1 AT-ATAAA
101088372 ATAAAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:101088801 original size:22 final size:22
Alignment explanation
Indices: 101088773--101088872 Score: 137
Period size: 22 Copynumber: 4.4 Consensus size: 22
101088763 TTTGTAGGCA
*
101088773 AGTGGAGTGGTTGGGGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
101088795 AGTGGAGTGGTTTAGTGTAGTGGTTT
1 AGTGGAGTGG-TT-G-G-AGTGGTTT
101088821 AGTGGAGTGGTTGGAGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
*
101088843 AGTAGAGTGGTTGGAGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
*
101088865 AGTAGAGT
1 AGTGGAGT
101088873 AAAGATATTT
Statistics
Matches: 72, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
22 47 0.65
23 3 0.04
24 2 0.03
25 3 0.04
26 17 0.24
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.37
Consensus pattern (22 bp):
AGTGGAGTGGTTGGAGTGGTTT
Found at i:101088806 original size:13 final size:13
Alignment explanation
Indices: 101088773--101088854 Score: 90
Period size: 13 Copynumber: 6.9 Consensus size: 13
101088763 TTTGTAGGCA
101088773 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
101088785 -G-GG-GTGGTTT
1 AGTGGAGTGGTTT
101088795 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
101088808 AGTGTAGTGGTTT
1 AGTGGAGTGGTTT
101088821 AGTGGAGTGG--T
1 AGTGGAGTGGTTT
101088832 --TGGAGTGGTTT
1 AGTGGAGTGGTTT
*
101088843 AGTAGAGTGGTT
1 AGTGGAGTGGTT
101088855 GGAGTGGTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
9 12 0.20
10 4 0.07
11 4 0.07
12 2 0.03
13 37 0.63
ACGTcount: A:0.15, C:0.00, G:0.48, T:0.38
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:101088872 original size:13 final size:12
Alignment explanation
Indices: 101088788--101088872 Score: 83
Period size: 13 Copynumber: 7.2 Consensus size: 12
101088778 AGTGGTTGGG
101088788 GTGGTTTAGTGGA
1 GTGGTTTAGT-GA
101088801 GTGGTTTAGTGTA
1 GTGGTTTAGTG-A
101088814 GTGGTTTAGTGGA
1 GTGGTTTAGT-GA
101088827 GTGG-TT-G-GA
1 GTGGTTTAGTGA
101088836 GTGGTTTAGTAGA
1 GTGGTTTAGT-GA
101088849 GTGG-TT-G-GA
1 GTGGTTTAGTGA
101088858 GTGGTTTAGTAGA
1 GTGGTTTAGT-GA
101088871 GT
1 GT
101088873 AAAGATATTT
Statistics
Matches: 62, Mismatches: 0, Indels: 20
0.76 0.00 0.24
Matches are distributed among these distances:
9 12 0.19
10 4 0.06
11 4 0.06
12 5 0.08
13 36 0.58
14 1 0.02
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (12 bp):
GTGGTTTAGTGA
Found at i:101090678 original size:27 final size:27
Alignment explanation
Indices: 101090640--101090692 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
101090630 TAAATGGGTT
101090640 GAGGGCATGTCAGAGGCGGCACCAGTG
1 GAGGGCATGTCAGAGGCGGCACCAGTG
*
101090667 GAGGGCATGTCAGAGGCTGCACCAGT
1 GAGGGCATGTCAGAGGCGGCACCAGT
101090693 TGTGCCTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.42, T:0.13
Consensus pattern (27 bp):
GAGGGCATGTCAGAGGCGGCACCAGTG
Found at i:101090945 original size:39 final size:43
Alignment explanation
Indices: 101090901--101090983 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 43
101090891 TATTATATAG
*
101090901 TTTGTTTAGTGTTATTT-TTA-T-A-TTTTGT-TTTAAAGTTAT
1 TTTGTTTAGTGTAATTTGTTAGTAAGTTTTGTGTTTAAA-TTAT
*
101090940 TTTGTTTATTGTAATTTGTTAGTAAGTTTTGTGTTTAAATTAT
1 TTTGTTTAGTGTAATTTGTTAGTAAGTTTTGTGTTTAAATTAT
101090983 T
1 T
101090984 GAGAATGTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
39 15 0.41
40 3 0.08
41 1 0.03
42 1 0.03
43 11 0.30
44 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.14, T:0.64
Consensus pattern (43 bp):
TTTGTTTAGTGTAATTTGTTAGTAAGTTTTGTGTTTAAATTAT
Found at i:101094982 original size:33 final size:33
Alignment explanation
Indices: 101094912--101095060 Score: 121
Period size: 33 Copynumber: 4.5 Consensus size: 33
101094902 AGGAGTGCCA
101094912 TACTGCGGTGGATACGA-CTCA-AGAGGAATGGA-T-
1 TACTGCGGTGGATACGAGC-CAGA-AGGAAT--ACTG
*
101094945 TACTGCGGTGGATACGAGCCAGAAGGACTACTG
1 TACTGCGGTGGATACGAGCCAGAAGGAATACTG
**
101094978 TACTGCGGTGGATACGAGCCTAG-AGGAATGTTG
1 TACTGCGGTGGATACGAGCC-AGAAGGAATACTG
* * * * *
101095011 TACAGCAGTGGATACGGGCCCGGAA-GAATACTA
1 TACTGCGGTGGATACGAG-CCAGAAGGAATACTG
*
101095044 TACTGTGGTGGATACGA
1 TACTGCGGTGGATACGA
101095061 CTCAAAGATT
Statistics
Matches: 94, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
31 1 0.01
32 1 0.01
33 85 0.90
34 7 0.07
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (33 bp):
TACTGCGGTGGATACGAGCCAGAAGGAATACTG
Found at i:101095022 original size:66 final size:66
Alignment explanation
Indices: 101094911--101095065 Score: 181
Period size: 66 Copynumber: 2.3 Consensus size: 66
101094901 GAGGAGTGCC
* * *
101094911 ATACTGCGGTGGATACGACTCAAGAGGAATGGATTACTGCGGTGGATACGAG-CCAGAAGGACTA
1 ATACTGCGGTGGATACGACTCAAGAGGAATGGATTACAGCAGTGGATACGAGCCCAGAA-GAATA
101094975 CT
65 CT
* * * * *
101094977 GTACTGCGGTGGATACGAGC-CTAGAGGAAT-GTTGTACAGCAGTGGATACGGGCCCGGAAGAAT
1 ATACTGCGGTGGATACGA-CTCAAGAGGAATGGAT-TACAGCAGTGGATACGAGCCCAGAAGAAT
101095040 ACT
64 ACT
*
101095043 ATACTGTGGTGGATACGACTCAA
1 ATACTGCGGTGGATACGACTCAA
101095066 AGATTTCAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
65 3 0.04
66 65 0.88
67 6 0.08
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.21
Consensus pattern (66 bp):
ATACTGCGGTGGATACGACTCAAGAGGAATGGATTACAGCAGTGGATACGAGCCCAGAAGAATAC
T
Found at i:101095216 original size:6 final size:6
Alignment explanation
Indices: 101095207--101095238 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
101095197 AGGCTCGTAA
101095207 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TC
101095239 GACCTCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (6 bp):
TCTGGC
Found at i:101097272 original size:22 final size:22
Alignment explanation
Indices: 101097232--101097283 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
101097222 TGAAATTGAT
*
101097232 AATATATAAAAAAAATTAAAGTG
1 AATA-ATAAAAAAAATTAAAATG
* *
101097255 AATAATAAAACAATTTAAAATG
1 AATAATAAAAAAAATTAAAATG
101097277 AATAATA
1 AATAATA
101097284 CATAAAACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (22 bp):
AATAATAAAAAAAATTAAAATG
Found at i:101097292 original size:26 final size:25
Alignment explanation
Indices: 101097197--101097302 Score: 94
Period size: 26 Copynumber: 4.2 Consensus size: 25
101097187 TGGTATATAA
101097197 AAAATAGATAATACATATAAA-AATTT
1 AAAAT-GATAATACATA-AAACAATTT
* * * *
101097223 GAAATTGATAATATATAAAAAAAATT
1 -AAAATGATAATACATAAAACAATTT
*
101097249 AAAGTG--AATA-ATAAAACAATTT
1 AAAATGATAATACATAAAACAATTT
101097271 AAAATGAATAATACATAAAACAAGTTT
1 AAAATG-ATAATACATAAAACAA-TTT
101097298 AAAAT
1 AAAAT
101097303 AAATAATGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
22 15 0.23
23 4 0.06
25 12 0.18
26 23 0.35
27 12 0.18
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (25 bp):
AAAATGATAATACATAAAACAATTT
Found at i:101097316 original size:27 final size:26
Alignment explanation
Indices: 101097255--101097309 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
101097245 AATTAAAGTG
*
101097255 AATA-ATAAAACAATTTAAAATGAAT
1 AATACATAAAACAATTTAAAATAAAT
101097280 AATACATAAAACAAGTTTAAAATAAAT
1 AATACATAAAACAA-TTTAAAATAAAT
101097307 AAT
1 AAT
101097310 GTATAAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 4 0.15
26 9 0.33
27 14 0.52
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (26 bp):
AATACATAAAACAATTTAAAATAAAT
Found at i:101099190 original size:21 final size:20
Alignment explanation
Indices: 101099149--101099196 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
101099139 TCAAATATAT
* *
101099149 TTAAAAACATAAAAACAAATA
1 TTAAAAAAATAAAAA-TAATA
101099170 TTAAAACAAATAAAAATAATA
1 TTAAAA-AAATAAAAATAATA
*
101099191 CTAAAA
1 TTAAAA
101099197 TAATTCTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAAAAATAAAAATAATA
Found at i:101099198 original size:11 final size:12
Alignment explanation
Indices: 101099182--101099214 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
101099172 AAAACAAATA
101099182 AAAATAATAC-T
1 AAAATAATACTT
*
101099193 AAAATAATTCTT
1 AAAATAATACTT
101099205 AAAATAATAC
1 AAAATAATAC
101099215 ACAAATTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAATAATACTT
Found at i:101101684 original size:12 final size:12
Alignment explanation
Indices: 101101667--101101692 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
101101657 CTTCTCTTTT
101101667 TTTTTTCTTTCC
1 TTTTTTCTTTCC
101101679 TTTTTTCTTTCC
1 TTTTTTCTTTCC
101101691 TT
1 TT
101101693 GTTGCCCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTCTTTCC
Found at i:101106002 original size:6 final size:6
Alignment explanation
Indices: 101105991--101106015 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
101105981 AGTTAATGTA
101105991 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
101106016 CACCAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:101108493 original size:29 final size:29
Alignment explanation
Indices: 101108455--101108532 Score: 129
Period size: 29 Copynumber: 2.6 Consensus size: 29
101108445 ATGATTTATG
101108455 TATGTAAATTATTTTTTCTTTGATATTCAT
1 TATG-AAATTATTTTTTCTTTGATATTCAT
*
101108485 TATGAAATTATTTCTTCTTTGATATTCAT
1 TATGAAATTATTTTTTCTTTGATATTCAT
101108514 TATGAAATTATTTCTTTCT
1 TATGAAATTATTT-TTTCT
101108533 ATAATTGAGC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 37 0.82
30 8 0.18
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (29 bp):
TATGAAATTATTTTTTCTTTGATATTCAT
Found at i:101109455 original size:17 final size:18
Alignment explanation
Indices: 101109433--101109467 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
101109423 AATATGTTGA
*
101109433 TAATTAAT-TTAAATTTT
1 TAATTAATATAAAATTTT
101109450 TAATTAATATAAAATTTT
1 TAATTAATATAAAATTTT
101109468 CAAAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTAATATAAAATTTT
Found at i:101116612 original size:29 final size:30
Alignment explanation
Indices: 101116569--101116631 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
101116559 ATAGCCTATG
* *
101116569 TTTTTATAATTTTTTAAGGGCTAAATTAAA
1 TTTTTATAATTTTTTAAGGCCAAAATTAAA
*
101116599 TTTTTATAATTTTTT-AGGCCAAAATTTAA
1 TTTTTATAATTTTTTAAGGCCAAAATTAAA
101116628 TTTT
1 TTTT
101116632 ACTATTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 15 0.50
30 15 0.50
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (30 bp):
TTTTTATAATTTTTTAAGGCCAAAATTAAA
Found at i:101116640 original size:29 final size:29
Alignment explanation
Indices: 101116569--101116640 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
101116559 ATAGCCTATG
* *
101116569 TTTTTATAATTTTTTAAGGGCTAAATTAAA
1 TTTTTAT-ATTTTTTAAGGCCAAAATTAAA
*
101116599 TTTTTATAATTTTTT-AGGCCAAAATTTAA
1 TTTTTAT-ATTTTTTAAGGCCAAAATTAAA
101116628 -TTTTACTATTTTT
1 TTTTTA-TATTTTT
101116641 GAGTCTCTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 11 0.29
29 12 0.32
30 15 0.39
ACGTcount: A:0.32, C:0.06, G:0.07, T:0.56
Consensus pattern (29 bp):
TTTTTATATTTTTTAAGGCCAAAATTAAA
Found at i:101122126 original size:21 final size:21
Alignment explanation
Indices: 101122093--101122145 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
101122083 TTCGAAGTTC
*
101122093 AAGGTTC-GAGTTTAGGGTTT
1 AAGGTTCGGAGTTTAGGATTT
*
101122113 AAGGTTTGGAGTTTAGGATTT
1 AAGGTTCGGAGTTTAGGATTT
*
101122134 TAGGTTCGGAGT
1 AAGGTTCGGAGT
101122146 AAAAAAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.21, C:0.04, G:0.36, T:0.40
Consensus pattern (21 bp):
AAGGTTCGGAGTTTAGGATTT
Found at i:101123673 original size:22 final size:24
Alignment explanation
Indices: 101123637--101123682 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
101123627 TTTTATGTGT
101123637 TTTTATAATTAATTTTAAATAATA
1 TTTTATAATTAATTTTAAATAATA
*
101123661 TTTTAT-ATT-ATTTTTAATAATA
1 TTTTATAATTAATTTTAAATAATA
101123683 AAACGAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 3 0.14
24 6 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTTTATAATTAATTTTAAATAATA
Found at i:101132559 original size:21 final size:22
Alignment explanation
Indices: 101132521--101132564 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
101132511 TTATTATGCC
*
101132521 ATTTTTAAAAAATACATA-AAA
1 ATTTTCAAAAAATACATACAAA
* *
101132542 ATTTTCAAAAAGTTCATACAAA
1 ATTTTCAAAAAATACATACAAA
101132564 A
1 A
101132565 AATTTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (22 bp):
ATTTTCAAAAAATACATACAAA
Found at i:101132997 original size:21 final size:21
Alignment explanation
Indices: 101132968--101133022 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
101132958 ATAGCGGTGG
* *
101132968 CGGTGAGATTAGTTACTGTAA
1 CGGTAAGATTAGATACTGTAA
* *
101132989 TGGTAAGATTGGATACTGTAA
1 CGGTAAGATTAGATACTGTAA
*
101133010 CGGTGAGATTAGA
1 CGGTAAGATTAGA
101133023 AACAATGGTG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (21 bp):
CGGTAAGATTAGATACTGTAA
Found at i:101134810 original size:19 final size:18
Alignment explanation
Indices: 101134795--101134849 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
101134785 TTGTAAAGTC
101134795 GTAAAAAAATTATAAAAAT
1 GTAAAAAAATTAT-AAAAT
*
101134814 ATAAAAAAA-TATAAAATT
1 GTAAAAAAATTATAAAA-T
101134832 GATAAAAAAATTATAAAA
1 G-TAAAAAAATTATAAAA
101134850 ATTATTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 4 0.13
18 4 0.13
19 16 0.52
20 7 0.23
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (18 bp):
GTAAAAAAATTATAAAAT
Found at i:101134813 original size:9 final size:9
Alignment explanation
Indices: 101134799--101134854 Score: 53
Period size: 9 Copynumber: 6.0 Consensus size: 9
101134789 AAAGTCGTAA
101134799 AAAAATTAT
1 AAAAATTAT
101134808 AAAAA-TAT
1 AAAAATTAT
*
101134816 AAAAA-AAT
1 AAAAATTAT
101134824 ATAAAATTGAT
1 A-AAAATT-AT
101134835 AAAAAAATTAT
1 --AAAAATTAT
101134846 AAAAATTAT
1 AAAAATTAT
101134855 TGTTTTAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 11 0.28
9 18 0.45
11 4 0.10
12 6 0.15
13 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:101134821 original size:10 final size:10
Alignment explanation
Indices: 101134796--101134850 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 10
101134786 TGTAAAGTCG
101134796 TAAAAAAAT-
1 TAAAAAAATA
*
101134805 TATAAAAATA
1 TAAAAAAATA
101134815 TAAAAAAATA
1 TAAAAAAATA
*
101134825 T--AAAATTGA
1 TAAAAAAAT-A
101134834 TAAAAAAATTA
1 TAAAAAAA-TA
101134845 TAAAAA
1 TAAAAA
101134851 TTATTGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 5 0.14
9 10 0.27
10 10 0.27
11 11 0.30
12 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:101134843 original size:12 final size:11
Alignment explanation
Indices: 101134796--101134850 Score: 52
Period size: 10 Copynumber: 5.5 Consensus size: 11
101134786 TGTAAAGTCG
101134796 TAAAAAAATTA
1 TAAAAAAATTA
101134807 T--AAAAA-TA
1 TAAAAAAATTA
101134815 TAAAAAAA-TA
1 TAAAAAAATTA
101134825 T---AAAATTGA
1 TAAAAAAATT-A
101134834 TAAAAAAATTA
1 TAAAAAAATTA
101134845 TAAAAA
1 TAAAAA
101134851 TTATTGTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
7 4 0.11
8 4 0.11
9 7 0.19
10 8 0.22
11 8 0.22
12 6 0.16
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (11 bp):
TAAAAAAATTA
Found at i:101135041 original size:18 final size:18
Alignment explanation
Indices: 101135020--101135055 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
101135010 TTTTTATGCG
101135020 TTTTATAAATTTTATACAT
1 TTTTAT-AATTTTATACAT
*
101135039 TTTTATAATTTTTTACA
1 TTTTATAATTTTATACA
101135056 AATTTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTTATACAT
Found at i:101135042 original size:10 final size:9
Alignment explanation
Indices: 101135020--101135113 Score: 59
Period size: 10 Copynumber: 10.1 Consensus size: 9
101135010 TTTTTATGCG
*
101135020 TTTTATAAA
1 TTTTATAAT
101135029 TTTTATACAT
1 TTTTATA-AT
101135039 TTTTATAATT
1 TTTTATAA-T
*
101135049 TTTTACAAAT
1 TTTTA-TAAT
*
101135059 TTTT-TATT
1 TTTTATAAT
*
101135067 TTTTCTAATT
1 TTTTATAA-T
*
101135077 TTTTCTAAT
1 TTTTATAAT
*
101135086 TTTTAATTAT
1 TTTT-ATAAT
101135096 TTTTA-AAT
1 TTTTATAAT
101135104 ATTTT-TAAT
1 -TTTTATAAT
101135113 T
1 T
101135114 AAAATTTAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
8 9 0.13
9 23 0.33
10 35 0.51
11 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:101135061 original size:19 final size:18
Alignment explanation
Indices: 101135020--101135070 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
101135010 TTTTTATGCG
* *
101135020 TTTTATAAATTTTATACAT
1 TTTTAT-AATTTTTTACAA
101135039 TTTTATAATTTTTTACAAA
1 TTTTATAATTTTTTAC-AA
*
101135058 TTTT-TTATTTTTT
1 TTTTATAATTTTTT
101135071 CTAATTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATAATTTTTTACAA
Found at i:101135076 original size:17 final size:18
Alignment explanation
Indices: 101135046--101135080 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
101135036 CATTTTTATA
101135046 ATTTTTTACAAATTTTTT
1 ATTTTTTACAAATTTTTT
*
101135064 ATTTTTT-CTAATTTTTT
1 ATTTTTTACAAATTTTTT
101135081 CTAATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTACAAATTTTTT
Found at i:101135112 original size:27 final size:27
Alignment explanation
Indices: 101135038--101135113 Score: 66
Period size: 28 Copynumber: 2.8 Consensus size: 27
101135028 ATTTTATACA
* * * *
101135038 TTTTTATAATTTTTTACAAATTTTTTAT
1 TTTTTCTAATATTTT-CTAATTTTTAAT
*
101135066 TTTTTCTAATTTTTTCTAATTTTTAAT
1 TTTTTCTAATATTTTCTAATTTTTAAT
101135093 TATTTT-TAAATATTTT-TAATT
1 T-TTTTCT-AATATTTTCTAATT
101135114 AAAATTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 17 0.40
28 25 0.60
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTTTCTAATATTTTCTAATTTTTAAT
Found at i:101135633 original size:20 final size:20
Alignment explanation
Indices: 101135610--101135655 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
101135600 TTTTTATCAC
101135610 AAATAATGACATTTTAATTT
1 AAATAATGACATTTTAATTT
* * *
101135630 AAATAATGGCGTTTTATTTT
1 AAATAATGACATTTTAATTT
101135650 AAATAA
1 AAATAA
101135656 ATAAATAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (20 bp):
AAATAATGACATTTTAATTT
Found at i:101145845 original size:2 final size:2
Alignment explanation
Indices: 101145838--101145864 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
101145828 AAAGATGGAA
101145838 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
101145865 GTAAATATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:101146394 original size:3 final size:3
Alignment explanation
Indices: 101146381--101146411 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
101146371 AAGTCAAAGG
*
101146381 TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
101146412 CACTTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:101155043 original size:15 final size:15
Alignment explanation
Indices: 101155025--101155057 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
101155015 AAAAAAGCTG
101155025 AAAGCAAAATAAAAT
1 AAAGCAAAATAAAAT
*
101155040 AAAGTAAAATAAAAT
1 AAAGCAAAATAAAAT
101155055 AAA
1 AAA
101155058 AGCTAACCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (15 bp):
AAAGCAAAATAAAAT
Found at i:101157782 original size:21 final size:21
Alignment explanation
Indices: 101157735--101157789 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
101157725 ACCGCTGTTT
* * *
101157735 CTAATCTCATCGCTACATTAT
1 CTAATCTCACCGCTACAGTAA
*
101157756 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
101157777 CTAATCTCACCGC
1 CTAATCTCACCGC
101157790 CACCGTTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:101163335 original size:38 final size:39
Alignment explanation
Indices: 101163283--101163364 Score: 130
Period size: 38 Copynumber: 2.1 Consensus size: 39
101163273 ATTAATATCA
* *
101163283 CATTTGATCATCAATAGATTTTGGATCACTTCGGTTTCC
1 CATTTGATCATCAATACATTTTGGATCACTTCGATTTCC
*
101163322 CATTT-ATCATCAATACATTTTGGATCACTTCGATTTCT
1 CATTTGATCATCAATACATTTTGGATCACTTCGATTTCC
101163360 CATTT
1 CATTT
101163365 CATATTATCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 35 0.88
39 5 0.12
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (39 bp):
CATTTGATCATCAATACATTTTGGATCACTTCGATTTCC
Found at i:101163781 original size:128 final size:128
Alignment explanation
Indices: 101163590--101163828 Score: 370
Period size: 128 Copynumber: 1.9 Consensus size: 128
101163580 TGGCAAAATA
* *
101163590 TATCTGCCGAAGAAATGATTAAAGATTCTATCTCAGGTTATTCTAGTGTTTAAGAAAAGGATATG
1 TATCTGCCAAAGAAATGATTAAAGATTCTATCTCAGGTTATTCTAGTATTTAAGAAAAGGATATG
* * * *
101163655 ATAAGTAAAGAGTAAGCCTGGTGAGGTTAACCGCTAAAGGTATAGTGTGCCTCTGGCGAAAAG
66 ATAAGTAAAGAGTAAGCATGATGAGGCTAACCACTAAAGGTATAGTGTGCCTCTGGCGAAAAG
* * *
101163718 TATCTTCCAAAGAAATGATTAAAGATTCTATCTTAGGTTATTCTATTATTTAAGAAAAGGATATG
1 TATCTGCCAAAGAAATGATTAAAGATTCTATCTCAGGTTATTCTAGTATTTAAGAAAAGGATATG
* * *
101163783 ATAAGTAAATAGTAAGCATGATGAGGCTAACTATTAAAGGTATAGT
66 ATAAGTAAAGAGTAAGCATGATGAGGCTAACCACTAAAGGTATAGT
101163829 ACGCCCAGTT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
128 99 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.31
Consensus pattern (128 bp):
TATCTGCCAAAGAAATGATTAAAGATTCTATCTCAGGTTATTCTAGTATTTAAGAAAAGGATATG
ATAAGTAAAGAGTAAGCATGATGAGGCTAACCACTAAAGGTATAGTGTGCCTCTGGCGAAAAG
Found at i:101165130 original size:23 final size:23
Alignment explanation
Indices: 101165039--101165130 Score: 80
Period size: 23 Copynumber: 4.0 Consensus size: 23
101165029 TGATCTGCTA
* ** *
101165039 AGCCTTTATGGCGTATTCTGTGT
1 AGCCTTTGTGGCAAATTCTGTAT
*
101165062 AGCCTTTGTGG-ATAATTCTATAT
1 AGCCTTTGTGGCA-AATTCTGTAT
**
101165085 AGAATTTGTGGCGAAA-TCTGTAT
1 AGCCTTTGTGGC-AAATTCTGTAT
*
101165108 AGCCTTTGTGGCAAATTCGGTAT
1 AGCCTTTGTGGCAAATTCTGTAT
101165131 TGTCTCATTG
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
22 3 0.06
23 48 0.89
24 2 0.04
25 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (23 bp):
AGCCTTTGTGGCAAATTCTGTAT
Found at i:101170881 original size:24 final size:25
Alignment explanation
Indices: 101170854--101170902 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
101170844 TTGTAAATCA
101170854 GAAAAATATCTCTAGA-AATTTTCT
1 GAAAAATATCTCTAGAGAATTTTCT
* * *
101170878 GAAATATCTCTTTAGAGAATTTTCT
1 GAAAAATATCTCTAGAGAATTTTCT
101170903 CTCTACAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (25 bp):
GAAAAATATCTCTAGAGAATTTTCT
Found at i:101170882 original size:22 final size:24
Alignment explanation
Indices: 101170857--101170902 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
101170847 TAAATCAGAA
101170857 AAATATCTC-TAGA-AATTTTCTG
1 AAATATCTCTTAGAGAATTTTCTG
101170879 AAATATCTCTTTAGAGAATTTTCT
1 AAATATCTC-TTAGAGAATTTTCT
101170903 CTCTACAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
24 4 0.19
25 8 0.38
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (24 bp):
AAATATCTCTTAGAGAATTTTCTG
Found at i:101171093 original size:20 final size:20
Alignment explanation
Indices: 101171068--101171116 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
101171058 TTAAATTAAA
*
101171068 TTTAATATTAATATAATCAC
1 TTTAATATTAAGATAATCAC
101171088 TTTAATATTAAGATAATCAC
1 TTTAATATTAAGATAATCAC
*
101171108 TTTAGTATT
1 TTTAATATT
101171117 TTATTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (20 bp):
TTTAATATTAAGATAATCAC
Found at i:101179463 original size:6 final size:6
Alignment explanation
Indices: 101179452--101179491 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
101179442 TAACCGAAAT
101179452 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAA
101179492 CTTTCTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:101181604 original size:55 final size:55
Alignment explanation
Indices: 101181538--101181663 Score: 153
Period size: 55 Copynumber: 2.3 Consensus size: 55
101181528 TAGACATTTG
** *
101181538 ACAAGTTCGACCACGGGTGTTCGACACGGGCGTGTCGCACGCCCGTGCTGTTTTA
1 ACAAGTTCGACCACGGGTCCTCCACACGGGCGTGTCGCACGCCCGTGCTGTTTTA
* * * * * * *
101181593 ACAGGTTCGACCATGGTTCCTCCACACGGGCGTGTTGCACGCTCGTGTTGTTTTT
1 ACAAGTTCGACCACGGGTCCTCCACACGGGCGTGTCGCACGCCCGTGCTGTTTTA
*
101181648 ACAAGCTCGACCACGG
1 ACAAGTTCGACCACGG
101181664 CCATGTCGCA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25
Consensus pattern (55 bp):
ACAAGTTCGACCACGGGTCCTCCACACGGGCGTGTCGCACGCCCGTGCTGTTTTA
Found at i:101186678 original size:122 final size:127
Alignment explanation
Indices: 101186511--101187010 Score: 393
Period size: 127 Copynumber: 4.0 Consensus size: 127
101186501 GTCAAATGCT
* * * *
101186511 AAATCGAAACCCAGCAC-GTAGGGCACAATTTCTCGAAATTTCCAAACA-CGAAATATTACCTTT
1 AAATCGAAACCCAGCACATTAGGGCACAATTTCTCGAAATTCCCAAACATC-AAACATCACCTTT
* * * *
101186574 -TTTT-GAG-GA-AAAACGCAGACGAAATTTTAAAGGGATATTTGATTATTTAGATAAACAAA
65 GTTTTAGAGCGAGAAAACGCAGACGAAATTTAAAAGGGAAATCTGATTATTTAGACAAACAAA
* * *
101186633 AAATCGAAACCCAGCACATTAGGGCACAATTTC-CTG-AATTCCCAAACATCAACCATCGCTTTT
1 AAATCGAAACCCAGCACATTAGGGCACAATTTCTC-GAAATTCCCAAACATCAAACATCACCTTT
* * * *
101186696 GTTTTAGAGCTTAGAAAACGCGGACGAAATTTAAAAGGGAAATCTGATTATTTGGACAAATAAA
65 GTTTTAGAGC-GAGAAAACGCAGACGAAATTTAAAAGGGAAATCTGATTATTTAGACAAACAAA
* * ** ** * * *
101186760 AGATCGAAACCCAACACATTAGGGCATGATCCCTCG-AATTTCTAAACATCAAACATC-GCTTTC
1 AAATCGAAACCCAGCACATTAGGGCACAATTTCTCGAAATTCCCAAACATCAAACATCACCTTT-
* * * * * *
101186823 GTTTTA-AG-GTTTAGAAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACGA
65 GTTTTAGAGCG---AGAAAACGCAGACGAAATTTAAAAGGGAAATCTGATTATTTAGACAAACAA
101186886 A
127 A
* * * * * * * * *
101186887 AGA-CTGAAACCCAACACATTAGGGTACAATCTATCG-AATTTCTAAACATCAAACATCGCCTTC
1 AAATC-GAAACCCAGCACATTAGGGCACAATTTCTCGAAATTCCCAAACATCAAACATCACCTTT
* * * * *
101186950 GTTTTA-AG-GTTTAGAAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAAC
65 GTTTTAGAGCG---AGAAAACGCAGACGAAATTTAAAAGGGAAATCTGATTATTTAGACAAAC
101187011 GAAAGACCGA
Statistics
Matches: 320, Mismatches: 43, Indels: 25
0.82 0.11 0.06
Matches are distributed among these distances:
122 37 0.12
123 20 0.06
124 3 0.01
126 7 0.02
127 249 0.78
128 4 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (127 bp):
AAATCGAAACCCAGCACATTAGGGCACAATTTCTCGAAATTCCCAAACATCAAACATCACCTTTG
TTTTAGAGCGAGAAAACGCAGACGAAATTTAAAAGGGAAATCTGATTATTTAGACAAACAAA
Found at i:101186735 original size:127 final size:127
Alignment explanation
Indices: 101186583--101187022 Score: 548
Period size: 127 Copynumber: 3.5 Consensus size: 127
101186573 TTTTTGAGGA
* * * * * * *
101186583 AAAACGCAGACGAAATTTTAAAGGGATATTTGATTATTTAGATAAACAAAAAATCGAAACCCAGC
1 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACAAAAGATCGAAACCCAAC
* * * * *
101186648 ACATTAGGGCACAATTTCCTGAATTCCCAAACATCAACCATCGCTTTTGTTTT-AGAGCTTAG
66 ACATTAGGGCACAATTTCCTGAATTTCTAAACATCAAACATCGCTTTCGTTTTAAG-GTTTAG
* ** * * * * *
101186710 AAAACGCGGACGAAATTTAAAAGGGAAATCTGATTATTTGGACAAATAAAAGATCGAAACCCAAC
1 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACAAAAGATCGAAACCCAAC
** *
101186775 ACATTAGGGCATGA-TCCCTCGAATTTCTAAACATCAAACATCGCTTTCGTTTTAAGGTTTAG
66 ACATTAGGGCACAATTTCCT-GAATTTCTAAACATCAAACATCGCTTTCGTTTTAAGGTTTAG
*
101186837 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACGAAAGA-CTGAAACCCAA
1 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACAAAAGATC-GAAACCCAA
* *
101186901 CACATTAGGGTACAATCTAT-C-GAATTTCTAAACATCAAACATCGCCTTCGTTTTAAGGTTTAG
65 CACATTAGGGCACAAT-T-TCCTGAATTTCTAAACATCAAACATCGCTTTCGTTTTAAGGTTTAG
* *
101186964 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACGAAAGACCGAAA
1 AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACAAAAGATCGAAA
101187023 TAAGTCGACT
Statistics
Matches: 275, Mismatches: 31, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
126 5 0.02
127 265 0.96
128 3 0.01
129 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (127 bp):
AAAACACACACGAAATTTTAAAGGGAAATTTGACTATTTAGACAAACAAAAGATCGAAACCCAAC
ACATTAGGGCACAATTTCCTGAATTTCTAAACATCAAACATCGCTTTCGTTTTAAGGTTTAG
Found at i:101198316 original size:39 final size:40
Alignment explanation
Indices: 101198221--101198412 Score: 155
Period size: 39 Copynumber: 4.9 Consensus size: 40
101198211 ACTTGAAACC
** * *
101198221 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* * * *
101198260 AATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCTGGACAT
1 AATTCCAGCAC-ATAGCCTGCGGGACCTTAAGCCCGGACAT
* * * * *
101198299 ATTTCTAGCACGTAGCCTG-TGGACCTTAAGCCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* * *
101198338 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
* *
101198377 AATTCCAGCACATAGCCTGC-GGACCCTAAGTCCGGA
1 AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGA
101198413 TATACATCAC
Statistics
Matches: 127, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
38 16 0.13
39 111 0.87
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
AATTCCAGCACATAGCCTGCGGGACCTTAAGCCCGGACAT
Found at i:101198340 original size:78 final size:78
Alignment explanation
Indices: 101198221--101198416 Score: 186
Period size: 78 Copynumber: 2.5 Consensus size: 78
101198211 ACTTGAAACC
** * *
101198221 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGG-TATAATACCAGCTCGA-AGCCTGCGGG
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGCCCGGATATAATACCAGCAC-ATAGCCTGC-GG
* *
101198283 A-CTTTAG-CCTGGACAT
62 ACCCTAAGTCC-GGACAT
* * * * *
101198299 ATTTCTAGCACGTAGCCTGTGGACCTTAAGCCCGGATATAATTCCAGCACATAGCCTGCGGACCC
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATATAATACCAGCACATAGCCTGCGGACCC
*
101198364 TAAGTCCGGATAT
66 TAAGTCCGGACAT
* *
101198377 AATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATATA
101198417 CATCACTGAA
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
77 22 0.23
78 71 0.75
79 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (78 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGCCCGGATATAATACCAGCACATAGCCTGCGGACCC
TAAGTCCGGACAT
Found at i:101198413 original size:39 final size:39
Alignment explanation
Indices: 101198305--101198416 Score: 188
Period size: 39 Copynumber: 2.9 Consensus size: 39
101198295 ACATATTTCT
* * * *
101198305 AGCACGTAGCCTGTGGACCTTAAGCCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
101198344 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
101198383 AGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATA
101198417 CATCACTGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (39 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCC
Found at i:101206676 original size:38 final size:39
Alignment explanation
Indices: 101206633--101206768 Score: 100
Period size: 39 Copynumber: 3.5 Consensus size: 39
101206623 TGAAACCAAT
101206633 TACCAGCAC-AAGCCTGCGGGAATTTAAACCTGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCTGGTATAA
* * * * * *
101206671 TACCAGCTCGAAGCCTACGGGACTTT-AGCCTGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCTGG-TATAA
* * * * * *
101206710 TTCCAGCACGTAGCCTGC-GGAACTTAAGTCCAGATATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAA-ACCTGGTATAA
*
101206749 TTCCAGCAC-ATAGCCTGCGG
1 TACCAGCACGA-AGCCTGCGG
101206769 ACCCTAAGTC
Statistics
Matches: 74, Mismatches: 18, Indels: 10
0.73 0.18 0.10
Matches are distributed among these distances:
38 19 0.26
39 51 0.69
40 4 0.05
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCTGGTATAA
Found at i:101206753 original size:39 final size:39
Alignment explanation
Indices: 101206710--101206825 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
101206700 CTGGACATAT
* * * *
101206710 TTCCAGCACGTAGCCTGCGGAACTTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
101206749 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
101206788 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
101206826 CATCACTGAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:101207449 original size:5 final size:5
Alignment explanation
Indices: 101207439--101207475 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
101207429 TTGTGTGTTC
101207439 TTTAT TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
101207476 TCACAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:101207463 original size:14 final size:14
Alignment explanation
Indices: 101207439--101207474 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
101207429 TTGTGTGTTC
101207439 TTTATTTTATTTTAT
1 TTTA-TTTATTTTAT
101207454 TTTATTTATTTTAT
1 TTTATTTATTTTAT
101207468 TTTATTT
1 TTTATTT
101207475 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTATTTTAT
Found at i:101207463 original size:19 final size:19
Alignment explanation
Indices: 101207439--101207475 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
101207429 TTGTGTGTTC
101207439 TTTATTTTATTTTATTTTA
1 TTTATTTTATTTTATTTTA
101207458 TTTATTTTATTTTATTTT
1 TTTATTTTATTTTATTTT
101207476 TCACAAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTATTTTATTTTATTTTA
Found at i:101215323 original size:22 final size:23
Alignment explanation
Indices: 101215296--101215339 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
101215286 ATTGTATTAT
101215296 ATTATTATAATATTCTT-TAATC
1 ATTATTATAATATTCTTATAATC
* *
101215318 ATTATTATTATTTTCTTATAAT
1 ATTATTATAATATTCTTATAAT
101215340 ATAAGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (23 bp):
ATTATTATAATATTCTTATAATC
Found at i:101218136 original size:44 final size:45
Alignment explanation
Indices: 101218061--101218167 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 45
101218051 CTTTAAGAAC
* * *
101218061 TCGCACACTTAGTG-CATAATTGTTTAGCTGAAGCTATAACGATA
1 TCGCACACTTAGTGCCATAATTATTAAACTGAAGCTATAACGATA
* *** *
101218105 TCGCACACTTAGTGCCATCA-TATTAAACTGAAGCTATCTTGGTA
1 TCGCACACTTAGTGCCATAATTATTAAACTGAAGCTATAACGATA
*
101218149 TCGTACACTTAGTGCCATA
1 TCGCACACTTAGTGCCATA
101218168 CAAAACCAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 48 0.92
45 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (45 bp):
TCGCACACTTAGTGCCATAATTATTAAACTGAAGCTATAACGATA
Found at i:101237499 original size:19 final size:20
Alignment explanation
Indices: 101237475--101237523 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
101237465 TATAAAAGTT
* *
101237475 TATAATTTTTTTA-TATTTC
1 TATAATTTTTCTAGGATTTC
*
101237494 TATAATTTTTCTAGGATTTT
1 TATAATTTTTCTAGGATTTC
101237514 TATAATTTTT
1 TATAATTTTT
101237524 ATAATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (20 bp):
TATAATTTTTCTAGGATTTC
Found at i:101237537 original size:10 final size:9
Alignment explanation
Indices: 101237473--101237559 Score: 77
Period size: 9 Copynumber: 9.1 Consensus size: 9
101237463 TTTATAAAAG
101237473 TTTATAATT
1 TTTATAATT
*
101237482 TTTTTATATT
1 TTTATA-ATT
*
101237492 TCTATAATT
1 TTTATAATT
*
101237501 TTTCTAGGATT
1 TTTATA--ATT
101237512 TTTATAATT
1 TTTATAATT
101237521 TTTATAATT
1 TTTATAATT
*
101237530 TTTAATAAAT
1 TTT-ATAATT
101237540 TTTA-AATAT
1 TTTATAAT-T
101237549 TTTATTAATT
1 TTTA-TAATT
101237559 T
1 T
101237560 AATCATTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
8 2 0.03
9 33 0.52
10 17 0.27
11 11 0.17
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:101237541 original size:29 final size:29
Alignment explanation
Indices: 101237482--101237559 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 29
101237472 GTTTATAATT
* * *
101237482 TTTTTAT-ATTTCTATAATTTTTCTAGGA
1 TTTTTATAATTTTTATAATTTTTATAGAA
101237510 TTTTTATAATTTTTATAATTTTTAATA-AA
1 TTTTTATAATTTTTATAATTTTT-ATAGAA
101237539 -TTTTA-AATATTTTATTAATTT
1 TTTTTATAAT-TTTTA-TAATTT
101237560 AATCATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 3 0.07
28 17 0.40
29 21 0.49
30 2 0.05
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTTTATAATTTTTATAATTTTTATAGAA
Found at i:101239825 original size:17 final size:17
Alignment explanation
Indices: 101239803--101239836 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
101239793 AGAGTGTTTT
101239803 GTAGTCAGTGTATGATC
1 GTAGTCAGTGTATGATC
101239820 GTAGTCAGTGTATGATC
1 GTAGTCAGTGTATGATC
101239837 AAAAATAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (17 bp):
GTAGTCAGTGTATGATC
Found at i:101239965 original size:21 final size:22
Alignment explanation
Indices: 101239925--101239966 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
101239915 TGTCAATGTG
101239925 GGATAAAAATTAACTTTTTAAA
1 GGATAAAAATTAACTTTTTAAA
*
101239947 GGATTAAAATTAA-TTTTTAA
1 GGATAAAAATTAACTTTTTAA
101239967 TGCAAAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (22 bp):
GGATAAAAATTAACTTTTTAAA
Found at i:101240265 original size:20 final size:21
Alignment explanation
Indices: 101240240--101240280 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
101240230 TAATGAATGT
101240240 GGGATTAAAATTAA-TTTTAA
1 GGGATTAAAATTAACTTTTAA
101240260 GGGATTAAAATTAACTTTTAA
1 GGGATTAAAATTAACTTTTAA
101240281 TGAAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.39
Consensus pattern (21 bp):
GGGATTAAAATTAACTTTTAA
Found at i:101240365 original size:93 final size:94
Alignment explanation
Indices: 101240262--101240451 Score: 249
Period size: 96 Copynumber: 2.0 Consensus size: 94
101240252 AATTTTAAGG
* * * *
101240262 GATTAAAATTAACTTTTAATGAAAATATTGAAGT-A-AGTTATGATAGTATTCCCTAGTTAGTGC
1 GATTAAAATTAACTTTTAATGAAAATAGTGAA-TAAGAGTTATGATAGTATTCCCGAGTCAATGC
101240325 GAGATTAAAACTAACTTTTTAATGAAAATA
65 GAGATTAAAACTAACTTTTTAATGAAAATA
* * * *
101240355 GATTAAAATTAATTTTTAATTAAAATAGTGAATAAATGAGTTATGGTAGTATTCTCGAGTCAATG
1 GATTAAAATTAACTTTTAATGAAAATAGTGAAT-AA-GAGTTATGATAGTATTCCCGAGTCAATG
* *
101240420 TGGGATTAAAACTAACTTTTTAATGAAAATA
64 CGAGATTAAAACTAACTTTTTAATGAAAATA
101240451 G
1 G
101240452 TGAATAAGTG
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
92 1 0.01
93 29 0.35
94 1 0.01
96 52 0.63
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (94 bp):
GATTAAAATTAACTTTTAATGAAAATAGTGAATAAGAGTTATGATAGTATTCCCGAGTCAATGCG
AGATTAAAACTAACTTTTTAATGAAAATA
Found at i:101240379 original size:27 final size:28
Alignment explanation
Indices: 101240326--101240382 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
101240316 AGTTAGTGCG
101240326 AGATTAAAACTAACTTTTTAATGAAAAT
1 AGATTAAAACTAACTTTTTAATGAAAAT
* *
101240354 AGATTAAAATTAA-TTTTTAATTAAAAT
1 AGATTAAAACTAACTTTTTAATGAAAAT
101240381 AG
1 AG
101240383 TGAATAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.56
28 12 0.44
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.39
Consensus pattern (28 bp):
AGATTAAAACTAACTTTTTAATGAAAAT
Found at i:101240489 original size:69 final size:68
Alignment explanation
Indices: 101240355--101240490 Score: 182
Period size: 69 Copynumber: 2.0 Consensus size: 68
101240345 AATGAAAATA
* * * ** * *
101240355 GATTAAAATTAATTTTTAATTAAAATAGTGAATAAATGAGTTATGGTAGTATTCTCGAGTCAATG
1 GATTAAAACTAATTTTTAATGAAAATAGTGAATAAATGAGCTATGACAGTATTCTCGAATAAATG
101240420 TGG
66 TGG
* *
101240423 GATTAAAACTAACTTTTTAATGAAAATAGTGAATAAGTGAGCTATGACAGTATTCTCTAATAAAT
1 GATTAAAACTAA-TTTTTAATGAAAATAGTGAATAAATGAGCTATGACAGTATTCTCGAATAAAT
101240488 GTG
65 GTG
101240491 ATCAAAATTA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
68 11 0.19
69 47 0.81
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.36
Consensus pattern (68 bp):
GATTAAAACTAATTTTTAATGAAAATAGTGAATAAATGAGCTATGACAGTATTCTCGAATAAATG
TGG
Found at i:101243496 original size:39 final size:39
Alignment explanation
Indices: 101243451--101243551 Score: 130
Period size: 39 Copynumber: 2.6 Consensus size: 39
101243441 GGTGTATTGA
* * * *
101243451 ATCGGGCCTTGAGCCTAACAGGCCTCGTGCCGGTGACTT
1 ATCGGGCTTTGAGCCTAGCAGGCCTCATGCCAGTGACTT
* *
101243490 ATCGGGCTTTGAGCCTAGCAAGCTTCATGCCAGTGACTT
1 ATCGGGCTTTGAGCCTAGCAGGCCTCATGCCAGTGACTT
**
101243529 ATCAAGCTTTGAGCCTAGCAGGC
1 ATCGGGCTTTGAGCCTAGCAGGC
101243552 TTTGTGCCTA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (39 bp):
ATCGGGCTTTGAGCCTAGCAGGCCTCATGCCAGTGACTT
Done.