Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 315 of 356
Found at i:102151918 original size:48 final size:47
Alignment explanation
Indices: 102151822--102152076 Score: 266
Period size: 42 Copynumber: 5.6 Consensus size: 47
102151812 TGCTACTGTA
* * * * *
102151822 TAAGATCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA-TCGTG
*
102151868 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTTATCCGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGAT-CGTG
* *
102151916 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGAG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGA-T-CGTG
102151965 TAAGACCATAGCTGGGCTATGGCATCGATATGTGA-A--T-AT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCGTG
*
102152007 TAAGACCATAGCTGGGCTATGGCGTC-ATTATGTGA-A---GAT-GTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATATGTGATCGTG
* **
102152049 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
102152077 GAAAATGAAG
Statistics
Matches: 185, Mismatches: 17, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 62 0.34
43 1 0.01
44 1 0.01
45 1 0.01
46 24 0.13
47 2 0.01
48 55 0.30
49 38 0.21
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATCGTG
Found at i:102151987 original size:49 final size:48
Alignment explanation
Indices: 102151822--102152029 Score: 261
Period size: 48 Copynumber: 4.5 Consensus size: 48
102151812 TGCTACTGTA
* * * *
102151822 TAAGATCATATCTGGGATATGGCATC-A-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
* * *
102151868 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTTATCCGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
*
102151916 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTACGAG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATT-CGTG
*
102151965 TAAGACCATAGCTGGGCTATGGCATCGATATGTGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
*
102152007 TAAGACCATAGCTGGGCTATGGC
1 TAAGACCATAGCTGGGATATGGC
102152030 GTCATTATGT
Statistics
Matches: 146, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
42 25 0.17
44 1 0.01
45 1 0.01
46 24 0.16
47 1 0.01
48 57 0.39
49 37 0.25
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGTGATATGTGATTCGTG
Found at i:102154282 original size:3 final size:3
Alignment explanation
Indices: 102154274--102154301 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
102154264 AAGAGCAATT
102154274 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
102154302 AATCTTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:102154310 original size:3 final size:3
Alignment explanation
Indices: 102154304--102154345 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
102154294 ATCATCATAA
102154304 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
102154346 ACCCAGCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:102158750 original size:60 final size:57
Alignment explanation
Indices: 102158679--102158789 Score: 168
Period size: 60 Copynumber: 1.9 Consensus size: 57
102158669 ATATTTTTAG
* **
102158679 TATTAAATTTAATTTAATATTTATCTTGTAGATAAGTATTCTATTAATTTAATAAATTTC
1 TATTAAATTTAATCTAATATTTATC-T-T-GATAAGTATTAAATTAATTTAATAAATTTC
102158739 TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATA
1 TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATA
102158790 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
57 22 0.46
58 1 0.02
59 1 0.02
60 24 0.50
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (57 bp):
TATTAAATTTAATCTAATATTTATCTTGATAAGTATTAAATTAATTTAATAAATTTC
Found at i:102158832 original size:9 final size:9
Alignment explanation
Indices: 102158818--102158842 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
102158808 ATTATAGTTG
102158818 AACTCTCTA
1 AACTCTCTA
102158827 AACTCTCTA
1 AACTCTCTA
102158836 AACTCTC
1 AACTCTC
102158843 CCTATATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:102161764 original size:12 final size:12
Alignment explanation
Indices: 102161747--102161771 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102161737 CTCCAGTGTT
102161747 ATTTGTTATGAA
1 ATTTGTTATGAA
102161759 ATTTGTTATGAA
1 ATTTGTTATGAA
102161771 A
1 A
102161772 AAAAGATGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTTGTTATGAA
Found at i:102163863 original size:46 final size:46
Alignment explanation
Indices: 102163796--102163970 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
102163786 TGTAACCCGC
102163796 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
102163842 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * * **
102163892 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
102163935 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
102163971 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.58
47 24 0.23
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:102163919 original size:93 final size:93
Alignment explanation
Indices: 102163804--102163974 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
102163794 GCCCATAAGT
** *
102163804 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
102163869 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
102163897 GAACTCGGATTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
102163962 CGAGTTCGGATGC
66 CGAGCTCGGATGC
102163975 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:102170825 original size:28 final size:26
Alignment explanation
Indices: 102170773--102170827 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 26
102170763 TACACATTTC
*
102170773 AAATATATATATATATAGAAGACTAA
1 AAATATATATATATATAGAAAACTAA
102170799 AAATAT-TATATTATATTAGAAAAACTAA
1 AAATATATATA-TATA-TAG-AAAACTAA
102170827 A
1 A
102170828 TTCATCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 4 0.16
26 10 0.40
27 3 0.12
28 8 0.32
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (26 bp):
AAATATATATATATATAGAAAACTAA
Found at i:102189950 original size:45 final size:45
Alignment explanation
Indices: 102189897--102190241 Score: 215
Period size: 45 Copynumber: 7.6 Consensus size: 45
102189887 TTTAATTCGT
* * *
102189897 TCCACTGCAACTTCAGGGAAATAAGATTCACTAACTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
* *
102189942 TCCACTGCAACTTCAGGGAAATAAGACTT--GTAA-TTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-TTCAGTAACTTT-AATCTGC
* * * * * *
102189986 TCCACTGCATCTTCAGGGAGATGAGGTT-TGTGACTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
* * * * * **
102190030 TCAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAAC
1 TCCACTGCAACTTCAGGGAGATAAGATT---CA--GTAACTTTAATCTGC
* * * * * *
102190080 -CTACTACAACTTCAGAGG-TATAAGATTTA-TAGCTTTAATCTAC
1 TCCACTGCAACTTCAG-GGAGATAAGATTCAGTAACTTTAATCTGC
* * * * *
102190123 TCTACTGCAACTTCAGAGAGATAAGATT-TGCTATA-TTGAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTCAG-TA-ACTTTAATCTGC
* * *
102190168 TCCACTGCAACTTTAGGGAGATAAGACTCTA-TGACTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTC-AGTAACTTTAATCTGC
* *
102190213 TCCACTGTAACTTCAGGGAGATGAGATTC
1 TCCACTGCAACTTCAGGGAGATAAGATTC
102190242 GCCATGGTAA
Statistics
Matches: 232, Mismatches: 49, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
43 16 0.07
44 85 0.37
45 96 0.41
46 3 0.01
49 19 0.08
50 13 0.06
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGATTCAGTAACTTTAATCTGC
Found at i:102190001 original size:44 final size:44
Alignment explanation
Indices: 102189897--102190004 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 44
102189887 TTTAATTCGT
**
102189897 TCCACTGCAACTTCAGGGAAATAAGATTCACTAACTTTAGTCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATT-ACTAACTTTAACCTGC
*
102189942 TCCACTGCAACTTCAGGGAAATAAGACTT-GTAA-TTTCAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGA-TTACTAACTTT-AACCTGC
*
102189986 TCCACTGCATCTTCAGGGA
1 TCCACTGCAACTTCAGGGA
102190005 GATGAGGTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.05
44 26 0.46
45 26 0.46
46 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAAATAAGATTACTAACTTTAACCTGC
Found at i:102190124 original size:93 final size:93
Alignment explanation
Indices: 102190019--102190333 Score: 347
Period size: 93 Copynumber: 3.4 Consensus size: 93
102190009 AGGTTTGTGA
* * *
102190019 CTTTAATCTACTCAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAACCTAC
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTAC
*
102190084 TACAACTTCAGAGGTATAAGATTTATAG
66 TGCAACTTCAGAGGTATAAGATTTATAG
* * * * ** *
102190112 CTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTG-C-T-AT-A-TTGAGTCTGCTCCA
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAAC-CTA
* * *
102190172 CTGCAACTTTAG-GGAGATAAGACTCTAT-G
65 CTGCAACTTCAGAGG-TATAAGA-TTTATAG
* * * * *
102190201 ACTTTAATCTGCTCCACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTA
1 -CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTA
*
102190266 CTGCAACTTCAGAGGTATAGGATTTATAG
65 CTGCAACTTCAGAGGTATAAGATTTATAG
* *
102190295 CTTTAATTTGCTCTACTGTAACTTCAGAGAGATAAGATT
1 CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATT
102190334 TGCTATATTG
Statistics
Matches: 177, Mismatches: 34, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
88 9 0.05
89 20 0.11
90 40 0.23
91 2 0.01
92 2 0.01
93 76 0.43
94 20 0.11
95 8 0.05
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (93 bp):
CTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGCCATGGTAACTTGATTCAACCTAC
TGCAACTTCAGAGGTATAAGATTTATAG
Found at i:102190147 original size:44 final size:44
Alignment explanation
Indices: 102190080--102190334 Score: 160
Period size: 45 Copynumber: 5.6 Consensus size: 44
102190070 TTGATTCAAC
* *
102190080 CTACTACAACTTCAGAG-GTATAAGATTTATAGCTTTAATCTACT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAATCTGCT
* ** * *
102190124 CTACTGCAACTTCAGAGAGATAAGATTTGCTATATTGAGTCTGCT
1 CTACTGCAACTTCAGAGAGATAAGATTT-ATAGCTTTAATCTGCT
* * * *
102190169 CCACTGCAACTTTAGGGAGATAAGACTCTAT-GACTTTAATCTGCT
1 CTACTGCAACTTCAGAGAGATAAGA-TTTATAG-CTTTAATCTGCT
* * * * * * * **
102190214 CCACTGTAACTTCAGGGAGATGAGATTCGCCAT-GGTAACTTGATCCAAC-
1 CTACTGCAACTTCAGAGAGATAAGATT---TATAGCT---TTAAT-CTGCT
* *
102190263 CTACTGCAACTTCAGAG-GTATAGGATTTATAGCTTTAATTTGCT
1 CTACTGCAACTTCAGAGAG-ATAAGATTTATAGCTTTAATCTGCT
*
102190307 CTACTGTAACTTCAGAGAGATAAGATTT
1 CTACTGCAACTTCAGAGAGATAAGATTT
102190335 GCTATATTGA
Statistics
Matches: 158, Mismatches: 38, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
43 1 0.01
44 54 0.34
45 66 0.42
46 5 0.03
47 5 0.03
48 1 0.01
49 24 0.15
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CTACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATCTGCT
Found at i:102190241 original size:183 final size:182
Alignment explanation
Indices: 102189904--102190352 Score: 616
Period size: 183 Copynumber: 2.5 Consensus size: 182
102189894 CGTTCCACTG
* * * * * * *
102189904 CAACTTCAG-GGAAATAAGATTCACTAACTTTAGTCTGCTCCACTGCAACTTCAGGGAAATAAGA
1 CAACTTCAGAGG-TATAAGATTTA-TAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGA
* * ** * * * * *
102189968 CTTG-TA-ATTTCAACCTGCTCCACTGCATCTTCAGGGAGATGAGGTTTGTGACTTTAATCTACT
64 TTTGCTATA-TTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGCTCTATGACTTTAATCTACT
*
102190031 CAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATTCAACCTACTA
128 CAACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
*
102190086 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
* * *
102190151 TGCTATATTGAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTCTATGACTTTAATCTGCTCC
66 TGCTATATTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAG-CTCTATGACTTTAATCTACTCA
*
102190216 ACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTG
130 ACTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
* * *
102190269 CAACTTCAGAGGTATAGGATTTATAGCTTTAATTTGCTCTACTGTAACTTCAGAGAGATAAGATT
1 CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
102190334 TGCTATATTGAGTCTGCTC
66 TGCTATATTGAGTCTGCTC
102190353 TATATTGAGT
Statistics
Matches: 237, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
181 37 0.16
182 49 0.21
183 151 0.64
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (182 bp):
CAACTTCAGAGGTATAAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
TGCTATATTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGCTCTATGACTTTAATCTACTCAA
CTGTAACTTCAGGGAGATGAGATTCGCCATGGTAACTTGATCCAACCTACTA
Found at i:102190357 original size:16 final size:16
Alignment explanation
Indices: 102190336--102190368 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
102190326 ATAAGATTTG
102190336 CTATATTGAGTCTGCT
1 CTATATTGAGTCTGCT
102190352 CTATATTGAGTCTGCT
1 CTATATTGAGTCTGCT
102190368 C
1 C
102190369 CACTGCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.42
Consensus pattern (16 bp):
CTATATTGAGTCTGCT
Found at i:102190490 original size:44 final size:44
Alignment explanation
Indices: 102190413--102190539 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 44
102190403 TGTAGCTTTG
* ** * * *
102190413 ATCTACTCTACTGTAACTTCAGAGAGATAAGATTCGTGACTTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
* * *
102190457 ATCTGCTCCACTACAACTTCAGGGAGACAAGATTCGCCACTTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
*
102190501 ATCTACTCCACTAAAACTTCAGGGAGACAAAATTCGTCA
1 ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCA
102190540 TGGTGATTTC
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
ATCTACTCCACTAAAACTTCAGGGAGACAAGATTCGTCACTTCA
Found at i:102198731 original size:19 final size:20
Alignment explanation
Indices: 102198693--102198736 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
102198683 GGGTCTTTTC
* * *
102198693 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGAAAATGA
102198712 ATGAAATGTAATGAAAATGA
1 ATGAAATGTAATGAAAATGA
102198732 ATGAA
1 ATGAA
102198737 TGCAAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.50, C:0.02, G:0.18, T:0.30
Consensus pattern (20 bp):
ATGAAATGTAATGAAAATGA
Found at i:102202454 original size:23 final size:22
Alignment explanation
Indices: 102202427--102202483 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
102202417 TAAAGAAATG
*
102202427 AAATAAATAATATAGACGATT-T
1 AAATAAATAATA-AGACAATTCT
102202449 AGAATAAATAATAAGACAATTCT
1 A-AATAAATAATAAGACAATTCT
*
102202472 AAACAAATAATA
1 AAATAAATAATA
102202484 CATAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 18 0.58
23 13 0.42
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (22 bp):
AAATAAATAATAAGACAATTCT
Found at i:102202681 original size:18 final size:17
Alignment explanation
Indices: 102202658--102202714 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
102202648 AAAGAAATTT
102202658 AGAATACATAATATATAA
1 AGAATA-ATAATATATAA
*
102202676 AGAATATATAATAGTTTAA
1 AGAATA-ATAATA-TATAA
* *
102202695 AAAATAATAATGTA-AA
1 AGAATAATAATATATAA
102202711 AGAA
1 AGAA
102202715 ATTTAAAGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 5 0.16
17 1 0.03
18 17 0.53
19 9 0.28
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.28
Consensus pattern (17 bp):
AGAATAATAATATATAA
Found at i:102202735 original size:61 final size:61
Alignment explanation
Indices: 102202619--102202737 Score: 152
Period size: 61 Copynumber: 1.9 Consensus size: 61
102202609 CTAAAATGAC
* *
102202619 ATATAAAAGTTTAAACTAAATAATATAAAAAAGAAATTTAGAATACATAATATATAAAGAAT
1 ATATAAAAGTTTAAAC-AAATAATATAAAAAAGAAATTTAGAATAAATAACATATAAAGAAT
* **
102202681 ATATAATAGTTTAAA-AAATAATAATGTAAAAGAAATTTA-AAGTAAATAACATATAAA
1 ATATAAAAGTTTAAACAAATAAT-ATAAAAAAGAAATTTAGAA-TAAATAACATATAAA
102202738 ATAATTTGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
60 9 0.18
61 27 0.54
62 14 0.28
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (61 bp):
ATATAAAAGTTTAAACAAATAATATAAAAAAGAAATTTAGAATAAATAACATATAAAGAAT
Found at i:102206266 original size:44 final size:44
Alignment explanation
Indices: 102206155--102206269 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
102206145 AGCTTGTACA
*
102206155 ATGCCAACATCCCAGACGTGGTCTT--ACATGAAATCAAATACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCAAATACG
** * * *
102206197 ATATCAATGTCCCAGACATGATCTTACACAT-AAATCACAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCA-AATA-CG
*
102206241 ATGCCAACGTCCCAGATGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
102206270 GAAAACACAT
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 19 0.33
43 7 0.12
44 31 0.54
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACATGAAATCAAATACG
Found at i:102208708 original size:26 final size:26
Alignment explanation
Indices: 102208672--102208723 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
102208662 CATATAATTG
102208672 TAGGCTGTTATTTCCACGTCACTAAA
1 TAGGCTGTTATTTCCACGTCACTAAA
102208698 TAGGCTGTTATTTCCACGTCACTAAA
1 TAGGCTGTTATTTCCACGTCACTAAA
102208724 AAACTAGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
TAGGCTGTTATTTCCACGTCACTAAA
Found at i:102208733 original size:26 final size:26
Alignment explanation
Indices: 102208676--102208733 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
102208666 TAATTGTAGG
**
102208676 CTGTTATTTCCACGTCACTAAATAGG
1 CTGTTATTTCCACGTCACTAAATAAA
102208702 CTGTTATTTCCACGTCACTAAA-AAA
1 CTGTTATTTCCACGTCACTAAATAAA
102208727 CTAGTTA
1 CT-GTTA
102208734 ATAGATTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (26 bp):
CTGTTATTTCCACGTCACTAAATAAA
Found at i:102210444 original size:21 final size:22
Alignment explanation
Indices: 102210395--102210445 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
102210385 TTAAATGTGT
*
102210395 TATATTTTTCTAAAATGATAAAG
1 TATA-TTTTCTAAAATAATAAAG
102210418 TA-ATTTTC-AAAATAATATAA-
1 TATATTTTCTAAAATAATA-AAG
102210438 TATATTTT
1 TATATTTT
102210446 TTATACAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 10 0.40
21 12 0.48
22 1 0.04
23 2 0.08
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (22 bp):
TATATTTTCTAAAATAATAAAG
Found at i:102210446 original size:22 final size:23
Alignment explanation
Indices: 102210395--102210446 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 23
102210385 TTAAATGTGT
*
102210395 TATATTTTTCTAAAATGATAAAG
1 TATATTTTTCTAAAATAATAAAG
102210418 TA-A-TTTTC-AAAATAATATAA-
1 TATATTTTTCTAAAATAATA-AAG
102210438 TATATTTTT
1 TATATTTTT
102210447 TATACAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 10 0.40
21 8 0.32
22 5 0.20
23 2 0.08
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (23 bp):
TATATTTTTCTAAAATAATAAAG
Found at i:102212104 original size:13 final size:15
Alignment explanation
Indices: 102212084--102212118 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
102212074 AGTAATTATA
102212084 AGAGAAAAAAAA-AG
1 AGAGAAAAAAAAGAG
102212098 A-AGAAAAAAAAGAG
1 AGAGAAAAAAAAGAG
102212112 AGAGAAA
1 AGAGAAA
102212119 GAACAGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.53
14 4 0.21
15 5 0.26
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAAAAGAG
Found at i:102219471 original size:14 final size:14
Alignment explanation
Indices: 102219452--102219500 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
102219442 ACTTAGAGGT
102219452 TTAATTTTATATTA
1 TTAATTTTATATTA
*
102219466 TTAATTTTTTATT-
1 TTAATTTTATATTA
*
102219479 TTAA--TAATATTA
1 TTAATTTTATATTA
102219491 TTAATTTTAT
1 TTAATTTTAT
102219501 CGTATAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
11 5 0.18
12 4 0.14
13 4 0.14
14 15 0.54
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATTTTATATTA
Found at i:102219476 original size:22 final size:24
Alignment explanation
Indices: 102219451--102219498 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
102219441 TACTTAGAGG
102219451 TTTAATTT-T-ATATTATTAATTT
1 TTTAATTTATAATATTATTAATTT
*
102219473 TTTATTTTAATAATATTATTAATTT
1 TTTAATTT-ATAATATTATTAATTT
102219498 T
1 T
102219499 ATCGTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
24 1 0.05
25 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTAATTTATAATATTATTAATTT
Found at i:102219508 original size:25 final size:25
Alignment explanation
Indices: 102219460--102219509 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
102219450 GTTTAATTTT
* * *
102219460 ATATTATTAATTTTTTATTTTAATA
1 ATATTATTAATTTTATAGTATAATA
*
102219485 ATATTATTAATTTTATCGTATAATA
1 ATATTATTAATTTTATAGTATAATA
102219510 TTTATAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTAATTTTATAGTATAATA
Found at i:102222923 original size:45 final size:45
Alignment explanation
Indices: 102222853--102222938 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
102222843 CATTTTAGTA
*
102222853 CCTTAGAAAGCACTTCAGAAAAGAGTGTCAAAGGTTTACTTTGCT
1 CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTTTGCT
* *
102222898 CCTTGGAAAGCACTTCAGAAGAGAGTGCCAAAGGTTTACTT
1 CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTT
102222939 GGCTATGAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (45 bp):
CCTTAGAAAGCACTTCAGAAAAGAGTGCCAAAGGTTTACTTTGCT
Found at i:102227141 original size:18 final size:18
Alignment explanation
Indices: 102227072--102227188 Score: 76
Period size: 18 Copynumber: 6.4 Consensus size: 18
102227062 ATAGTAATTA
*
102227072 ATCAATCAGTAATATTCATT
1 ATCAATCAGT--TATTCAGT
* * *
102227092 AACAATCAGTCAATCAG-
1 ATCAATCAGTTATTCAGT
* * *
102227109 AACAATTATTTATTCAGT
1 ATCAATCAGTTATTCAGT
* *
102227127 ATCAGTCAGTTATTCGGT
1 ATCAATCAGTTATTCAGT
* * *
102227145 AACAATCAATTATTCAAT
1 ATCAATCAGTTATTCAGT
*
102227163 AAT-AATAAGTTATTCAGT
1 -ATCAATCAGTTATTCAGT
102227181 ATCAATCA
1 ATCAATCA
102227189 ATTGATCGGT
Statistics
Matches: 71, Mismatches: 23, Indels: 8
0.70 0.23 0.08
Matches are distributed among these distances:
17 15 0.21
18 46 0.65
19 1 0.01
20 9 0.13
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (18 bp):
ATCAATCAGTTATTCAGT
Found at i:102227263 original size:19 final size:19
Alignment explanation
Indices: 102227118--102227265 Score: 72
Period size: 18 Copynumber: 7.7 Consensus size: 19
102227108 GAACAATTAT
* * *
102227118 TTATTCAGTATCAGTC-AG
1 TTATTCAGTAACAATCAAA
*
102227136 TTATTCGGTAACAATC-AA
1 TTATTCAGTAACAATCAAA
* * *
102227154 TTATTCAATAATAAT-AAG
1 TTATTCAGTAACAATCAAA
*
102227172 TTATTCAGTATCAATCAATTGA
1 TTATTCAGTAACAATCAA---A
* *
102227194 TCGGTTATCCAGTAACAGTC-AA
1 ----TTATTCAGTAACAATCAAA
* *
102227216 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
102227235 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
102227253 TTATTCAGTAACA
1 TTATTCAGTAACA
102227266 GTCGATCTTT
Statistics
Matches: 95, Mismatches: 24, Indels: 21
0.68 0.17 0.15
Matches are distributed among these distances:
18 66 0.69
19 14 0.15
22 1 0.01
25 1 0.01
26 13 0.14
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:102227461 original size:53 final size:53
Alignment explanation
Indices: 102227387--102227507 Score: 152
Period size: 53 Copynumber: 2.3 Consensus size: 53
102227377 CCGAAACAGT
* * * * *
102227387 AACAGTAACAGTAGCAGTACGGTACATAGAGTACCTAATCAAAATAAATCCGG
1 AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
* * **
102227440 AACGGTAACAGTAACAATACGGTACACAGAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
*
102227493 AATAGTAACAGTAAC
1 AACAGTAACAGTAAC
102227508 GGTAACAGTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (53 bp):
AACAGTAACAGTAACAATACGGTACACAGAGTACCTAATCAAAACAAATCCGA
Found at i:102228618 original size:16 final size:16
Alignment explanation
Indices: 102228592--102228628 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
102228582 TCCCTATTTC
102228592 TCCTT-TTTCTTTCTT
1 TCCTTCTTTCTTTCTT
*
102228607 TTCTTCTTTCTTTCTT
1 TCCTTCTTTCTTTCTT
102228623 TCCTTC
1 TCCTTC
102228629 CCCTGCTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TCCTTCTTTCTTTCTT
Found at i:102228690 original size:2 final size:2
Alignment explanation
Indices: 102228683--102228730 Score: 68
Period size: 2 Copynumber: 26.0 Consensus size: 2
102228673 TTGTTTTGTT
102228683 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
102228722 TA TA -A TA TA
1 TA TA TA TA TA
102228731 ATAACATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
1 4 0.10
2 38 0.90
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:102232007 original size:51 final size:51
Alignment explanation
Indices: 102231931--102232037 Score: 205
Period size: 51 Copynumber: 2.1 Consensus size: 51
102231921 ATACTATTGT
102231931 TCAATAAGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCAAGTACGA
1 TCAATAAGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCAAGTACGA
*
102231982 TCAATAGGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCAAGTACGA
1 TCAATAAGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCAAGTACGA
102232033 TCAAT
1 TCAAT
102232038 CATAAATATA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (51 bp):
TCAATAAGTGCGCTTGCCTTTATCGTGATAATAGTTAGTTTTCAAGTACGA
Found at i:102234831 original size:46 final size:46
Alignment explanation
Indices: 102234771--102235079 Score: 402
Period size: 46 Copynumber: 6.9 Consensus size: 46
102234761 TTTAACGTGA
* * * * * *
102234771 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
102234817 TGCCATGGTATCTTTCAACCATAGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
102234863 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCACATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
102234909 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102234955 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
102235001 TGCCATGGTATCTTTCAACCATAGTCTT--ACA---C--AT-AGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102235039 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
102235080 AAGAGAGCAC
Statistics
Matches: 234, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
38 31 0.13
39 2 0.01
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 6 0.03
46 187 0.80
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:102235048 original size:38 final size:38
Alignment explanation
Indices: 102234997--102235072 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
102234987 ATTTCATATC
102234997 AGGTTGCCATGGTATCTTTCAACCATAGTCTTACACAT
1 AGGTTGCCATGGTATCTTTCAACCATAGTCTTACACAT
*
102235035 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 AGGTTGCCATGGTATCTTTCAACCATAGTCTTACACAT
102235073 TTCATATAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (38 bp):
AGGTTGCCATGGTATCTTTCAACCATAGTCTTACACAT
Found at i:102237227 original size:11 final size:11
Alignment explanation
Indices: 102237211--102237258 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
102237201 CTTTATATAC
102237211 TAATAAAATAA
1 TAATAAAATAA
*
102237222 TAATAAAATATCT
1 TAATAAAATA--A
* *
102237235 TATTAAAATAT
1 TAATAAAATAA
102237246 TAATAAAATAA
1 TAATAAAATAA
102237257 TA
1 TA
102237259 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:102239411 original size:9 final size:9
Alignment explanation
Indices: 102239397--102239436 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
102239387 CCTTTTACCC
102239397 TATTACTTT
1 TATTACTTT
102239406 TATTACTTT
1 TATTACTTT
*
102239415 TATTTCTTT
1 TATTACTTT
102239424 TACTT-CTTT
1 TA-TTACTTT
102239433 TATT
1 TATT
102239437 TGATTTATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 2 0.07
9 25 0.86
10 2 0.07
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.70
Consensus pattern (9 bp):
TATTACTTT
Found at i:102241022 original size:17 final size:18
Alignment explanation
Indices: 102240982--102241015 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102240972 ATTTTTGAAG
*
102240982 ACTTTTATTTATTATTTT
1 ACTTTTATCTATTATTTT
102241000 ACTTTTATCT-TTATTT
1 ACTTTTATCTATTATTT
102241016 ATCTTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (18 bp):
ACTTTTATCTATTATTTT
Found at i:102246477 original size:54 final size:53
Alignment explanation
Indices: 102246355--102246506 Score: 184
Period size: 54 Copynumber: 2.9 Consensus size: 53
102246345 AAAGGTTTTT
* ***
102246355 GGGGTTTGGG-GGAAGTAAAAGTTTTAGGG-GAAATCAAAAGAAAAAAATTTAA
1 GGGG-TTGGGAGGAAGTAAAAGTTTTAGGGAGAAAACAAAAGAAAAAAAACCAA
* * * *
102246407 GGGTTTGGGA-GAAGTAAAAGTTTTGGGGAGAAAGCAAAAGGAAAAAAAACCGA
1 GGGGTTGGGAGGAAGTAAAAGTTTTAGGGAGAAAACAAAA-GAAAAAAAACCAA
*
102246460 GGGGTTGGGAGGAAGTAAAAGTTTTAGGGAGAAAATAAAAGAAAAAA
1 GGGGTTGGGAGGAAGTAAAAGTTTTAGGGAGAAAACAAAAGAAAAAA
102246507 GAAAAATGTT
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
51 22 0.26
52 12 0.14
53 25 0.29
54 26 0.31
ACGTcount: A:0.46, C:0.03, G:0.33, T:0.18
Consensus pattern (53 bp):
GGGGTTGGGAGGAAGTAAAAGTTTTAGGGAGAAAACAAAAGAAAAAAAACCAA
Found at i:102247414 original size:56 final size:56
Alignment explanation
Indices: 102247339--102247453 Score: 221
Period size: 56 Copynumber: 2.1 Consensus size: 56
102247329 CTTGAGAATT
*
102247339 TCTATAGCCACCAAAAAGGAAAAGTGAAGTAGAGATCCTAGAGAGCTTGACTATCA
1 TCTATAGCCACCAAAAAGGAAAAGTGAAGTAGAGATCATAGAGAGCTTGACTATCA
102247395 TCTATAGCCACCAAAAAGGAAAAGTGAAGTAGAGATCATAGAGAGCTTGACTATCA
1 TCTATAGCCACCAAAAAGGAAAAGTGAAGTAGAGATCATAGAGAGCTTGACTATCA
102247451 TCT
1 TCT
102247454 TGGAAGTAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (56 bp):
TCTATAGCCACCAAAAAGGAAAAGTGAAGTAGAGATCATAGAGAGCTTGACTATCA
Found at i:102250998 original size:23 final size:25
Alignment explanation
Indices: 102250945--102250998 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
102250935 AATATACGTA
*
102250945 TTATATCTATTTTATAATTATTTAC
1 TTATATCTATATTATAATTATTTAC
102250970 TTATATCT-TATTAT-ATTA-TTAC
1 TTATATCTATATTATAATTATTTAC
102250992 TTCATAT
1 TT-ATAT
102250999 TTTTCTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 6 0.22
23 8 0.30
24 5 0.19
25 8 0.30
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATATCTATATTATAATTATTTAC
Found at i:102251923 original size:46 final size:46
Alignment explanation
Indices: 102251863--102252033 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
102251853 TTTGACGTGA
* * * * * *
102251863 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
102251909 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
102251955 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG-T
102252002 T-CCATGGTATCTTTCAACCATGGTCTTACACA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA
102252034 CAGGTTGTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
45 4 0.04
46 105 0.95
47 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:102252055 original size:38 final size:38
Alignment explanation
Indices: 102252003--102252155 Score: 189
Period size: 38 Copynumber: 3.8 Consensus size: 38
102251993 TATCAGGATT
102252003 CCATGGTATCTTTCAACCATGGTCTTACACACAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACACAGGTTG
*
102252041 TCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTG
* * *
102252087 CCATGGTATCTTTTAGCTATGGTCTTACACACAGGTTG
1 CCATGGTATCTTTCAACCATGGTCTTACACACAGGTTG
*
102252125 CCATGGTTTCTTTCAACCATGGTCTTACACA
1 CCATGGTATCTTTCAACCATGGTCTTACACA
102252156 TTTCATATCA
Statistics
Matches: 98, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
38 59 0.60
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 29 0.30
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (38 bp):
CCATGGTATCTTTCAACCATGGTCTTACACACAGGTTG
Found at i:102252099 original size:84 final size:84
Alignment explanation
Indices: 102251953--102252166 Score: 358
Period size: 84 Copynumber: 2.5 Consensus size: 84
102251943 TTCATGTCAC
*
102251953 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGATTCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGATTCCATGGTATCTTTCA
102252018 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
* *
102252037 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG-TTGCCATGGTATCTTTT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGATT-CCATGGTATCTTTC
* *
102252101 AGCTATGGTCTTACACACAG
65 AACCATGGTCTTACACACAG
*
102252121 GTTGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102252167 AGAGCACACT
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
83 2 0.02
84 120 0.98
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (84 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGATTCCATGGTATCTTTCA
ACCATGGTCTTACACACAG
Found at i:102252109 original size:46 final size:46
Alignment explanation
Indices: 102252034--102252166 Score: 165
Period size: 46 Copynumber: 3.1 Consensus size: 46
102252024 GTCTTACACA
*
102252034 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
102252080 CAGGTTGCCATGGTATCTTTTAGCTATGGTCTT--ACA---C--A-
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
102252118 CAGGTTGCCATGGTTTCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
102252164 CAG
1 CAG
102252167 AGAGCACACT
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
38 29 0.41
39 1 0.01
40 3 0.04
41 1 0.01
43 1 0.01
44 3 0.04
45 1 0.01
46 32 0.45
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (46 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:102254265 original size:11 final size:11
Alignment explanation
Indices: 102254249--102254296 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
102254239 CTTTATATAC
102254249 TAATAAAATAA
1 TAATAAAATAA
*
102254260 TAATAAAATATCT
1 TAATAAAATA--A
* *
102254273 TATTAAAATAT
1 TAATAAAATAA
102254284 TAATAAAATAA
1 TAATAAAATAA
102254295 TA
1 TA
102254297 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:102254800 original size:22 final size:24
Alignment explanation
Indices: 102254765--102254808 Score: 58
Period size: 22 Copynumber: 1.9 Consensus size: 24
102254755 ATCTTCAGGG
102254765 TATTACAATTATTTTCA-TAATTGA
1 TATTACAATTA-TTTCATTAATTGA
102254789 TATTA-AA-TATTTCATTAATT
1 TATTACAATTATTTCATTAATT
102254809 ATTTCCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 7 0.37
23 2 0.11
24 5 0.26
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTACAATTATTTCATTAATTGA
Found at i:102254918 original size:21 final size:22
Alignment explanation
Indices: 102254893--102254936 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
102254883 TATTTCAAAA
*
102254893 TTCAT-TATCAGTTACTATGTT
1 TTCATATATCAGTTAATATGTT
* *
102254914 TTCATATATTATTTAATATGTT
1 TTCATATATCAGTTAATATGTT
102254936 T
1 T
102254937 ATTATCTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATATATCAGTTAATATGTT
Found at i:102265394 original size:28 final size:28
Alignment explanation
Indices: 102265335--102265403 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
102265325 AACTTATTTT
* *
102265335 TTTAATAATATAAAAATTAAATTTAACCA
1 TTTAATAATA-AAAAACTAAATTTAACAA
*
102265364 TTTAATAATAAAAAACT-AATTTAATTAA
1 TTTAATAATAAAAAACTAAATTTAA-CAA
*
102265392 TTTATTAATAAA
1 TTTAATAATAAA
102265404 CCCAACACTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.20
28 18 0.51
29 10 0.29
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (28 bp):
TTTAATAATAAAAAACTAAATTTAACAA
Found at i:102266157 original size:19 final size:20
Alignment explanation
Indices: 102266133--102266175 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
102266123 CCATCACCTG
* *
102266133 CAAAACAAAA-ACAGAGAAC
1 CAAAACAAAACACAAAGAAA
102266152 CAAAACAAAACACAAAGAAA
1 CAAAACAAAACACAAAGAAA
102266172 CAAA
1 CAAA
102266176 GAAGAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.72, C:0.21, G:0.07, T:0.00
Consensus pattern (20 bp):
CAAAACAAAACACAAAGAAA
Found at i:102267366 original size:24 final size:24
Alignment explanation
Indices: 102267329--102267391 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
102267319 TCATGTACAC
*
102267329 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
102267353 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
102267377 ATTATTGTATTTATT
1 ATTATTGTATTTATT
102267392 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:102267406 original size:24 final size:24
Alignment explanation
Indices: 102267350--102267406 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
102267340 TATTTTCATG
* *
102267350 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
102267374 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
102267398 ATTAGTATT
1 ATTATTATT
102267407 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:102267647 original size:25 final size:24
Alignment explanation
Indices: 102267603--102267676 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 24
102267593 GTATGTATTA
102267603 TATATATTT-TTA-ATACTATATTAT
1 TATATATTTATTATATA-TAT-TTAT
102267627 GTATATATTATATTATATATATTTAT
1 -TATATATT-TATTATATATATTTAT
* *
102267653 TATATTTTTATGTATATATTTTTA
1 TATATATTTAT-TATATATATTTA
102267677 ATATCACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
24 3 0.07
25 26 0.60
26 5 0.12
27 6 0.14
28 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (24 bp):
TATATATTTATTATATATATTTAT
Found at i:102267655 original size:18 final size:18
Alignment explanation
Indices: 102267598--102267658 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 18
102267588 AATGTGTATG
102267598 TATTATATATATTT-TTAA
1 TATTATATATATTTATT-A
* *
102267616 TACTATATTATGTATATATTA
1 TA-T-TA-TATATATTTATTA
102267637 TATTATATATATTTATTA
1 TATTATATATATTTATTA
102267655 TATT
1 TATT
102267659 TTTATGTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 17 0.49
19 3 0.09
20 3 0.09
21 10 0.29
22 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TATTATATATATTTATTA
Found at i:102267664 original size:37 final size:39
Alignment explanation
Indices: 102267598--102267672 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
102267588 AATGTGTATG
102267598 TATTATATATATTTTTAATACTATATTATGTATATATTA
1 TATTATATATATTTTTAATACTATATTATGTATATATTA
*
102267637 TATTATATATATTTATT-ATA-T-TTTTATGTATATATT
1 TATTATATATATTT-TTAATACTATATTATGTATATATT
102267673 TTTAATATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
37 14 0.41
38 1 0.03
39 17 0.50
40 2 0.06
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (39 bp):
TATTATATATATTTTTAATACTATATTATGTATATATTA
Found at i:102267673 original size:23 final size:24
Alignment explanation
Indices: 102267600--102267673 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 24
102267590 TGTGTATGTA
102267600 TTATATATATTTTTA-ATACTATA-
1 TTATATATATTTTTATATA-TATAT
* *
102267623 TTATGTATATATTATATTATATATAT
1 TTATATATAT-TTTTA-TATATATAT
*
102267649 TTAT-TATATTTTTATGTATATAT
1 TTATATATATTTTTATATATATAT
102267672 TT
1 TT
102267674 TTAATATCAC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
23 19 0.44
24 8 0.19
25 9 0.21
26 7 0.16
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (24 bp):
TTATATATATTTTTATATATATAT
Found at i:102267850 original size:3 final size:3
Alignment explanation
Indices: 102267844--102267899 Score: 51
Period size: 3 Copynumber: 18.0 Consensus size: 3
102267834 TTTAGTCATA
* *
102267844 TAT TAT TAT CAT TAT TTT CTACGT TAT -AT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TA--T TAT TAT TAT TAT TAT TAT TAT TAT
*
102267891 TAT CAT TAT
1 TAT TAT TAT
102267900 CATTTTCATT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
2 2 0.05
3 37 0.86
4 1 0.02
5 2 0.05
6 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:102276258 original size:21 final size:21
Alignment explanation
Indices: 102276227--102276281 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
102276217 GAAGCTCGAA
* *
102276227 AGCTGAACAGAAACTCGT-ATG
1 AGCTAAACAGAAACTCATGA-G
* *
102276248 AGTTAAACAGAAGCTCATGAG
1 AGCTAAACAGAAACTCATGAG
102276269 AGCTAAACAGAAA
1 AGCTAAACAGAAA
102276282 GTAAAACACG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.45, C:0.16, G:0.22, T:0.16
Consensus pattern (21 bp):
AGCTAAACAGAAACTCATGAG
Found at i:102280967 original size:21 final size:20
Alignment explanation
Indices: 102280935--102280975 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
102280925 ATTATCATCA
102280935 CATTAAACAAGCAATAAAAC
1 CATTAAACAAGCAATAAAAC
* *
102280955 CATTCAAATAAGCAATCAAAC
1 CATT-AAACAAGCAATAAAAC
102280976 AAGCAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.22, G:0.05, T:0.17
Consensus pattern (20 bp):
CATTAAACAAGCAATAAAAC
Found at i:102281275 original size:30 final size:30
Alignment explanation
Indices: 102281239--102281297 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
102281229 GAGCTTGGGA
102281239 AAGCTCAGTGTGAACACATGCATACAACAG
1 AAGCTCAGTGTGAACACATGCATACAACAG
102281269 AAGCTCAGTGTGAACACATGCATACAACA
1 AAGCTCAGTGTGAACACATGCATACAACA
102281298 CAAGTAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.41, C:0.24, G:0.19, T:0.17
Consensus pattern (30 bp):
AAGCTCAGTGTGAACACATGCATACAACAG
Found at i:102286131 original size:104 final size:105
Alignment explanation
Indices: 102285911--102286143 Score: 287
Period size: 104 Copynumber: 2.2 Consensus size: 105
102285901 TATGCTATAG
* * *
102285911 AGCCCGGACACACACCCATGTCCTTACCCGTATGGCTCACACGGCCTGGGCACACGCCTATATCA
1 AGCCTGGACACACACCCATGTCCTTACCAGTATGGCTCACACGGCCTGGGCACACACCTATATCA
* *
102285976 TCTGCTCATTTGGTTCTAAACCATAAACAGTGAGTTACAC
66 CCTGCTCATGTGGTTCTAAACCATAAACAGTGAGTTACAC
* * *
102286016 -GACCTGG-CACACGCCCATGTCCTTACCAGTGTGGCTCACACGGCCTGGGCACACACCTATGTC
1 AG-CCTGGACACACACCCATGTCCTTACCAGTATGGCTCACACGGCCTGGGCACACACCTATATC
* * * *
102286079 -CCTGGC-CGTGTGTTTCTAAA-GAGTAGACAGTGAGTTACAC
65 ACCT-GCTCATGTGGTTCTAAACCA-TAAACAGTGAGTTACAC
*
102286119 AGCCTGGACACACACACATGTCCTT
1 AGCCTGGACACACACCCATGTCCTT
102286144 GTTCGTGTAG
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
102 1 0.01
103 34 0.31
104 70 0.64
105 4 0.04
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (105 bp):
AGCCTGGACACACACCCATGTCCTTACCAGTATGGCTCACACGGCCTGGGCACACACCTATATCA
CCTGCTCATGTGGTTCTAAACCATAAACAGTGAGTTACAC
Found at i:102286222 original size:42 final size:42
Alignment explanation
Indices: 102286176--102286280 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
102286166 AGACATATGT
* *
102286176 CGATGTCCTTGCTCGTGTGGCTCACACGGCCTGGGCACACGC
1 CGATGTCCTTGCTCGTGTGGCTCACACAGCCTGGGCACACAC
* * * ** *
102286218 CGATGTCATTGCCCGTGTGGCTTACACAGTTTGGGCACATAC
1 CGATGTCCTTGCTCGTGTGGCTCACACAGCCTGGGCACACAC
* *
102286260 CCATGTCCTTGGTCGTGTGGC
1 CGATGTCCTTGCTCGTGTGGC
102286281 GTCGATAGTC
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.13, C:0.30, G:0.30, T:0.27
Consensus pattern (42 bp):
CGATGTCCTTGCTCGTGTGGCTCACACAGCCTGGGCACACAC
Found at i:102288390 original size:26 final size:25
Alignment explanation
Indices: 102288346--102288395 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
102288336 TTATTTAATT
102288346 TAATTATTATTTTTACTATTATTAAC
1 TAATTATTATTTTTACTATT-TTAAC
*
102288372 TAATT-TTATTTTATCCTATTTTAA
1 TAATTATTATTTT-TACTATTTTAA
102288396 TTCCTATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (25 bp):
TAATTATTATTTTTACTATTTTAAC
Found at i:102293141 original size:12 final size:12
Alignment explanation
Indices: 102293124--102293154 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
102293114 AGAATGGCTA
102293124 GAGTTATTTTCT
1 GAGTTATTTTCT
102293136 GAGTTATTTTCT
1 GAGTTATTTTCT
102293148 GA-TTATT
1 GAGTTATT
102293155 CGATACAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.19, C:0.06, G:0.16, T:0.58
Consensus pattern (12 bp):
GAGTTATTTTCT
Found at i:102297057 original size:7 final size:7
Alignment explanation
Indices: 102297045--102297074 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
102297035 CTAAAGCTAC
102297045 CACTTAT
1 CACTTAT
102297052 CACTTAT
1 CACTTAT
102297059 CACTTAT
1 CACTTAT
*
102297066 CACTGAT
1 CACTTAT
102297073 CA
1 CA
102297075 GATAAGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.03, T:0.37
Consensus pattern (7 bp):
CACTTAT
Found at i:102297061 original size:51 final size:51
Alignment explanation
Indices: 102297004--102297118 Score: 185
Period size: 51 Copynumber: 2.3 Consensus size: 51
102296994 CGGATCACAT
*
102297004 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
102297055 TTATCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
102297106 TTGTCACTGATCA
1 TTATCACTTATCA
102297119 GAAGTACTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (51 bp):
TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:102304784 original size:51 final size:51
Alignment explanation
Indices: 102304729--102304883 Score: 238
Period size: 51 Copynumber: 3.0 Consensus size: 51
102304719 CTGATCACAT
*
102304729 TTATCAGTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
102304780 TTATCACTTGTCATTGATCAAATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * ***
102304831 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGGGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
102304882 TT
1 TT
102304884 GTCGCTGATC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 94 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:102306654 original size:12 final size:11
Alignment explanation
Indices: 102306632--102306656 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
102306622 CAGATTCTAA
102306632 TTTAATTTTTT
1 TTTAATTTTTT
102306643 TTTAATTTTTT
1 TTTAATTTTTT
102306654 TTT
1 TTT
102306657 CTAGTACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTAATTTTTT
Found at i:102308650 original size:23 final size:23
Alignment explanation
Indices: 102308601--102308653 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
102308591 TAATTTAAAT
* *
102308601 AAATACTCATATTTATATAATTG
1 AAATATTCATATTTATATAATTA
*
102308624 AAATATTCATATTT-TATATTATA
1 AAATATTCATATTTATATAAT-TA
102308647 AAATATT
1 AAATATT
102308654 TATTATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (23 bp):
AAATATTCATATTTATATAATTA
Found at i:102308659 original size:14 final size:14
Alignment explanation
Indices: 102308640--102308670 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
102308630 TCATATTTTA
102308640 TATTATAAAATATT
1 TATTATAAAATATT
*
102308654 TATTATTAAATATT
1 TATTATAAAATATT
102308668 TAT
1 TAT
102308671 AAATTGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATAAAATATT
Found at i:102308800 original size:25 final size:26
Alignment explanation
Indices: 102308748--102308806 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
102308738 GTAAAATTTA
* *
102308748 TTATTAAAATAGTAATATTAAATAAT
1 TTATTAAAACAATAATATTAAATAAT
* *
102308774 TTATTAAAACAATAA-ATTATATTAT
1 TTATTAAAACAATAATATTAAATAAT
*
102308799 TTAATAAA
1 TTATTAAA
102308807 TTTATATTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (26 bp):
TTATTAAAACAATAATATTAAATAAT
Found at i:102309736 original size:23 final size:21
Alignment explanation
Indices: 102309705--102309747 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102309695 TATTATATGA
102309705 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
102309728 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
102309748 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:102312909 original size:15 final size:15
Alignment explanation
Indices: 102312891--102312921 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
102312881 TTAAATACTT
102312891 TTTTAAAATTTTATA
1 TTTTAAAATTTTATA
*
102312906 TTTTAGAATTTTATA
1 TTTTAAAATTTTATA
102312921 T
1 T
102312922 AAAGAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTAAAATTTTATA
Found at i:102313070 original size:20 final size:20
Alignment explanation
Indices: 102313041--102313116 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 20
102313031 AATTTATGTT
*
102313041 TTTTAGATTTTATATATATA
1 TTTTAAATTTTATATATATA
102313061 TTTTAAATTTT-T-TATAT-
1 TTTTAAATTTTATATATATA
* * * *
102313078 GTTT-ATTTTTATTTTTATA
1 TTTTAAATTTTATATATATA
*
102313097 TTTTTAATTTGTATATATAT
1 TTTTAAATTT-TATATATAT
102313117 TTAATAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
16 5 0.12
17 4 0.09
18 9 0.21
19 4 0.09
20 14 0.33
21 7 0.16
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTAAATTTTATATATATA
Found at i:102313071 original size:29 final size:27
Alignment explanation
Indices: 102313039--102313118 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 27
102313029 GTAATTTATG
102313039 TTTTTTAGATTTTATATATATATTTTAAA
1 TTTTTTA-ATTTTATATATAT-TTTTAAA
* * *
102313068 TTTTTTATATGTTTATTTTTATTTTTATA
1 TTTTTTA-AT-TTTATATATATTTTTAAA
102313097 -TTTTTAATTTGTATATATATTT
1 TTTTTTAATTT-TATATATATTT
102313119 AATAAAAAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 11 0.26
28 6 0.14
29 15 0.35
30 9 0.21
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.69
Consensus pattern (27 bp):
TTTTTTAATTTTATATATATTTTTAAA
Found at i:102320721 original size:22 final size:22
Alignment explanation
Indices: 102320693--102320762 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
102320683 ATTAACATAC
102320693 ATTAATAAAAATAATATTTTAA
1 ATTAATAAAAATAATATTTTAA
** ** *
102320715 ATTAAT-ATGATAA-A-CATAC
1 ATTAATAAAAATAATATTTTAA
102320734 ATTAATAAAAATAATATTTTAA
1 ATTAATAAAAATAATATTTTAA
102320756 ATTAATA
1 ATTAATA
102320763 TGATAAATAT
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
19 8 0.23
20 6 0.17
21 6 0.17
22 15 0.43
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (22 bp):
ATTAATAAAAATAATATTTTAA
Found at i:102320731 original size:41 final size:41
Alignment explanation
Indices: 102320686--102320769 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
102320676 TTCCATCATT
102320686 AACATACATTAATAAAAATAATATTTTAAATTAATATGATA
1 AACATACATTAATAAAAATAATATTTTAAATTAATATGATA
102320727 AACATACATTAATAAAAATAATATTTTAAATTAATATGATA
1 AACATACATTAATAAAAATAATATTTTAAATTAATATGATA
102320768 AA
1 AA
102320770 TATAACAGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (41 bp):
AACATACATTAATAAAAATAATATTTTAAATTAATATGATA
Found at i:102320771 original size:22 final size:22
Alignment explanation
Indices: 102320705--102320772 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
102320695 TAATAAAAAT
102320705 AATATTTTAAATTAATATGATA
1 AATATTTTAAATTAATATGATA
* * * *
102320727 AACA---TACATTAATA-AAAA
1 AATATTTTAAATTAATATGATA
102320745 TAATATTTTAAATTAATATGATA
1 -AATATTTTAAATTAATATGATA
102320768 AATAT
1 AATAT
102320773 AACAGATTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 10
0.65 0.16 0.20
Matches are distributed among these distances:
18 2 0.06
19 12 0.36
22 17 0.52
23 2 0.06
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (22 bp):
AATATTTTAAATTAATATGATA
Found at i:102326639 original size:9 final size:9
Alignment explanation
Indices: 102326622--102326658 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
102326612 TGAATATCAC
102326622 AATTCGAAT
1 AATTCGAAT
*
102326631 AACTCGAAT
1 AATTCGAAT
*
102326640 AATTTGAAT
1 AATTCGAAT
102326649 AATTCGAAT
1 AATTCGAAT
102326658 A
1 A
102326659 GCAGATTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:102326752 original size:10 final size:10
Alignment explanation
Indices: 102326724--102326775 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
102326714 AGTCACTCTC
102326724 TCAACAAAAAT
1 TCAA-AAAAAT
102326735 TACAAAAAAAAT
1 T-C-AAAAAAAT
102326747 TCAAAAAAAT
1 TCAAAAAAAT
102326757 TC--AAAAAT
1 TCAAAAAAAT
*
102326765 TCAAAATAAT
1 TCAAAAAAAT
102326775 T
1 T
102326776 TTTAAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
8 8 0.22
10 16 0.44
11 2 0.06
12 8 0.22
13 2 0.06
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (10 bp):
TCAAAAAAAT
Found at i:102326782 original size:19 final size:19
Alignment explanation
Indices: 102326742--102326800 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
102326732 AATTACAAAA
* *
102326742 AAAATTCAAAAAAATTCA-
1 AAAATTCAAAATAATTTAT
*
102326760 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
*
102326779 AAAATTAAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
102326797 AAAA
1 AAAA
102326801 ATTTTAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 24 0.69
19 11 0.31
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:102326801 original size:19 final size:19
Alignment explanation
Indices: 102326741--102326803 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
102326731 AAATTACAAA
*
102326741 AAAAATTCAAAAA-AA-TTC
1 AAAAATT-AAAAATAATTTT
*
102326759 AAAAATTCAAAATAATTTT
1 AAAAATTAAAAATAATTTT
*
102326778 TAAAATTAAAAAT-ATTTAT
1 AAAAATTAAAAATAATTT-T
102326797 AAAAATT
1 AAAAATT
102326804 TTAAAATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.11
18 13 0.35
19 20 0.54
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTAAAAATAATTTT
Found at i:102326848 original size:21 final size:21
Alignment explanation
Indices: 102326815--102326857 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
102326805 TAAAATTTAT
* *
102326815 AGTTTTTAGAAAATTATAAAA
1 AGTTTCTAAAAAATTATAAAA
*
102326836 AGTTTCTAAAAAATTCTAAAA
1 AGTTTCTAAAAAATTATAAAA
102326857 A
1 A
102326858 ACATATAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (21 bp):
AGTTTCTAAAAAATTATAAAA
Found at i:102327919 original size:16 final size:16
Alignment explanation
Indices: 102327886--102327918 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
102327876 CATTATTGTA
102327886 CCATGCACTAACACCC
1 CCATGCACTAACACCC
102327902 CCATGCACTAAC-CCC
1 CCATGCACTAACACCC
102327917 CC
1 CC
102327919 CCCCCCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.27, C:0.55, G:0.06, T:0.12
Consensus pattern (16 bp):
CCATGCACTAACACCC
Found at i:102333426 original size:18 final size:19
Alignment explanation
Indices: 102333388--102333426 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
102333378 CCATTTTTTG
102333388 ATGAAAATATAAAAAACTA
1 ATGAAAATATAAAAAACTA
102333407 ATGAAAA-ATAATAAAA-TA
1 ATGAAAATATAA-AAAACTA
102333425 AT
1 AT
102333427 TATAAATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (19 bp):
ATGAAAATATAAAAAACTA
Found at i:102333689 original size:11 final size:12
Alignment explanation
Indices: 102333673--102333703 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
102333663 GTAACATTTT
102333673 ATAATTTTTA-A
1 ATAATTTTTATA
102333684 ATAATTTTTATA
1 ATAATTTTTATA
102333696 ATAATTTT
1 ATAATTTT
102333704 CCAATATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATAATTTTTATA
Found at i:102337631 original size:15 final size:16
Alignment explanation
Indices: 102337605--102337634 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
102337595 TACCCAACAG
102337605 ATTTATATATAATAAC
1 ATTTATATATAATAAC
102337621 ATTTA-ATATAATAA
1 ATTTATATATAATAA
102337635 TTGGAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATTTATATATAATAAC
Found at i:102345011 original size:30 final size:31
Alignment explanation
Indices: 102344948--102345014 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 31
102344938 GAGTGCAGTT
*
102344948 GTGTGGGCCACACGGGCTAGGCCAAGTTGGGC
1 GTGTGGGCCACACAGGCTAGGCCAAG-TGGGC
*
102344980 GTGTGGGCCACACAGGC-ATGCCACA-TGGGC
1 GTGTGGGCCACACAGGCTAGGCCA-AGTGGGC
102345010 GTGTG
1 GTGTG
102345015 AGTTTTAGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 10 0.31
31 5 0.16
32 17 0.53
ACGTcount: A:0.16, C:0.25, G:0.42, T:0.16
Consensus pattern (31 bp):
GTGTGGGCCACACAGGCTAGGCCAAGTGGGC
Found at i:102352961 original size:45 final size:45
Alignment explanation
Indices: 102352871--102352961 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 45
102352861 TCATTGACTT
* * *
102352871 AAAAATTAGCAATTCAACTATCTATATATAAAGAATTAGCAAAAA
1 AAAAATGAGCAATTCAACAATCTATATATAAAAAATTAGCAAAAA
102352916 AAAAATGAGCAATTCAACAA-CT-TATAAGTAAAAAAATTAGCAAAAA
1 AAAAATGAGCAATTCAACAATCTATAT-A-T-AAAAAATTAGCAAAAA
102352962 GCATCGATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
43 3 0.08
44 3 0.08
45 19 0.47
46 15 0.38
ACGTcount: A:0.58, C:0.11, G:0.08, T:0.23
Consensus pattern (45 bp):
AAAAATGAGCAATTCAACAATCTATATATAAAAAATTAGCAAAAA
Found at i:102356994 original size:6 final size:6
Alignment explanation
Indices: 102356983--102357010 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
102356973 AAAAATTTAA
102356983 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
102357011 GTAGCTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:102357821 original size:31 final size:31
Alignment explanation
Indices: 102357775--102357840 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
102357765 TTTTTTAGCT
* * * *
102357775 AAATTTGACCCTCAACCTTTTAAAAAG-GATC
1 AAATTTAACCATCAACATTTCAAAAAGAG-TC
102357806 AAATTTAACCATCAACATTTCAAAAAGAGTC
1 AAATTTAACCATCAACATTTCAAAAAGAGTC
102357837 AAAT
1 AAAT
102357841 GGTTGGCCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (31 bp):
AAATTTAACCATCAACATTTCAAAAAGAGTC
Found at i:102358481 original size:55 final size:54
Alignment explanation
Indices: 102358381--102358484 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 54
102358371 AACAATGTCA
* * * * *
102358381 TCTTTAAAGTTTTGAACTCGAAGATTTTCTTTTAAAAGTGCAATGTAAAAGTTG
1 TCTTCAAAGTTTTGAACTCGAAAATCTCCTTTTAAAAGTGAAATGTAAAAGTTG
*
102358435 TCTTCAAAGTTTTGAACTCAGAAAATCTCCTTTTTAAAGTGAAATGTAAA
1 TCTTCAAAGTTTTGAACTC-GAAAATCTCCTTTTAAAAGTGAAATGTAAA
102358485 TTATGTAAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
54 18 0.42
55 25 0.58
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (54 bp):
TCTTCAAAGTTTTGAACTCGAAAATCTCCTTTTAAAAGTGAAATGTAAAAGTTG
Found at i:102360059 original size:15 final size:15
Alignment explanation
Indices: 102360041--102360090 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
102360031 GAGTTGTGTC
102360041 ATTTCAGATTTGATT
1 ATTTCAGATTTGATT
102360056 ATTTTC-GATTTGATTT
1 A-TTTCAGATTTGA-TT
* *
102360072 ATTCCAAATTTGATT
1 ATTTCAGATTTGATT
102360087 ATTT
1 ATTT
102360091 TGGGTTTGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 16 0.55
16 13 0.45
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (15 bp):
ATTTCAGATTTGATT
Found at i:102360063 original size:31 final size:31
Alignment explanation
Indices: 102360026--102360091 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
102360016 TCATTTAAAT
* *
102360026 TTTTCGAGTTG-TGTCATTTCAGATTTGATTA
1 TTTTCGAGTTGAT-TCATTCCAAATTTGATTA
* *
102360057 TTTTCGATTTGATTTATTCCAAATTTGATTA
1 TTTTCGAGTTGATTCATTCCAAATTTGATTA
102360088 TTTT
1 TTTT
102360092 GGGTTTGGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.56
Consensus pattern (31 bp):
TTTTCGAGTTGATTCATTCCAAATTTGATTA
Found at i:102360073 original size:16 final size:16
Alignment explanation
Indices: 102360042--102360091 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
102360032 AGTTGTGTCA
102360042 TTTCAGATTTGATTAT
1 TTTCAGATTTGATTAT
102360058 TTTC-GATTTGATT-T
1 TTTCAGATTTGATTAT
* *
102360072 ATTCCAAATTTGATTAT
1 -TTTCAGATTTGATTAT
102360089 TTT
1 TTT
102360092 GGGTTTGGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 1 0.04
15 12 0.43
16 14 0.50
17 1 0.04
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.58
Consensus pattern (16 bp):
TTTCAGATTTGATTAT
Found at i:102370217 original size:22 final size:22
Alignment explanation
Indices: 102370192--102370234 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
102370182 ACTTTATTAT
* *
102370192 TATTATTTTGCTACCATTTTAC
1 TATTATATTACTACCATTTTAC
*
102370214 TATTATATTACTACTATTTTA
1 TATTATATTACTACCATTTTA
102370235 TTGTTGTTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.14, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTATATTACTACCATTTTAC
Found at i:102372100 original size:15 final size:14
Alignment explanation
Indices: 102372080--102372166 Score: 62
Period size: 15 Copynumber: 6.4 Consensus size: 14
102372070 TTTTTAAAAA
102372080 TATTTTATATTATAT
1 TATTTTATATTA-AT
102372095 TATTTTAATATTAAT
1 TATTTT-ATATTAAT
* *
102372110 AATTTTAT-TT-TT
1 TATTTTATATTAAT
*
102372122 TA-TTTAT-TAAAT
1 TATTTTATATTAAT
102372134 T-TTTTATA-TAAT
1 TATTTTATATTAAT
102372146 TATCTTTAATATT-AT
1 TAT-TTT-ATATTAAT
102372161 TATTTT
1 TATTTT
102372167 GTTAATACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 17
0.72 0.07 0.21
Matches are distributed among these distances:
11 6 0.10
12 13 0.22
13 3 0.05
14 8 0.14
15 21 0.36
16 7 0.12
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTTTATATTAAT
Found at i:102372115 original size:52 final size:50
Alignment explanation
Indices: 102372052--102372191 Score: 115
Period size: 52 Copynumber: 2.7 Consensus size: 50
102372042 AAAGATGCCC
102372052 ATATT-AT-ATTTTAAATATTTTTTAAAAATATTTTATATTATATTAT-TTTA
1 ATATTAATAATTTT-AATATTTTTTAAAAATATTTTATA-TA-ATTATCTTTA
* * * *
102372102 ATATTAATAATTTTATTTTTTATTTATTAAATTTTTTATATAATTATCTTTA
1 ATATTAATAATTTTAATATTT-TTTA-AAAATATTTTATATAATTATCTTTA
* * ** *
102372154 ATATTATTATTTTGTTAATACATTTTAAAATTATTTTA
1 ATATTAATA-ATT-TTAATATTTTTTAAAAATATTTTA
102372192 AAGTTTATAT
Statistics
Matches: 70, Mismatches: 13, Indels: 12
0.74 0.14 0.13
Matches are distributed among these distances:
50 5 0.07
51 12 0.17
52 31 0.44
53 17 0.24
54 5 0.07
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (50 bp):
ATATTAATAATTTTAATATTTTTTAAAAATATTTTATATAATTATCTTTA
Found at i:102376743 original size:16 final size:17
Alignment explanation
Indices: 102376693--102376745 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 17
102376683 AAGAATAACG
102376693 AAAAATAATAGTAATATT
1 AAAAATAATAGT-ATATT
102376711 AAAGAACTACTATAGTATA-T
1 AAA-AA-TA--ATAGTATATT
102376731 AAAAATAATAGTATA
1 AAAAATAATAGTATA
102376746 ATAATATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 8 0.26
18 5 0.16
19 4 0.13
20 6 0.19
21 3 0.10
22 5 0.16
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (17 bp):
AAAAATAATAGTATATT
Found at i:102380420 original size:44 final size:44
Alignment explanation
Indices: 102380331--102380420 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 44
102380321 ACTTAAAATC
* * *
102380331 ATTTTATAATTTTTATATATTTTATAATTCAATATTTTTATATA
1 ATTTTATAATTTTCATATATTTTATAATTCAATATATGTATATA
*
102380375 ATTTATATAATTTTCATGTATTTT-TAATTCAATATCATGTA-ATA
1 ATTT-TATAATTTTCATATATTTTATAATTCAATAT-ATGTATATA
102380419 AT
1 AT
102380421 ATTTTTAACC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
44 20 0.50
45 20 0.50
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (44 bp):
ATTTTATAATTTTCATATATTTTATAATTCAATATATGTATATA
Found at i:102386647 original size:15 final size:15
Alignment explanation
Indices: 102386627--102386656 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102386617 TCGGGAGTCC
102386627 ATTTTCCAAGGTACT
1 ATTTTCCAAGGTACT
102386642 ATTTTCCAAGGTACT
1 ATTTTCCAAGGTACT
102386657 GTTTAGACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (15 bp):
ATTTTCCAAGGTACT
Found at i:102387860 original size:20 final size:20
Alignment explanation
Indices: 102387831--102387869 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
102387821 AATACATTAC
*
102387831 ACACGTCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
102387851 ACACGCCCGTGTGCTTTGG
1 ACACGCCCGTGTGCTTTGG
102387870 TCCTCTACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.28, G:0.33, T:0.28
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:102394283 original size:54 final size:54
Alignment explanation
Indices: 102394201--102394343 Score: 252
Period size: 54 Copynumber: 2.6 Consensus size: 54
102394191 GGAGGAAGCA
102394201 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
102394255 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
* *
102394309 TTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
102394344 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 80 0.93
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
Found at i:102394354 original size:27 final size:27
Alignment explanation
Indices: 102394203--102394361 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
102394193 AGGAAGCATC
*
102394203 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
102394230 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
102394257 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
102394284 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
102394311 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
102394338 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
102394362 GTAGCCTCAC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:102394355 original size:81 final size:80
Alignment explanation
Indices: 102394203--102394361 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
102394193 AGGAAGCATC
*
102394203 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
102394268 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
102394284 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
102394347 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
102394362 GTAGCCTCAC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:102397327 original size:9 final size:9
Alignment explanation
Indices: 102397313--102397341 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
102397303 TGCAAATTAG
102397313 AAAGAAAGA
1 AAAGAAAGA
102397322 AAAGAAAGA
1 AAAGAAAGA
102397331 AAA-AAAGA
1 AAAGAAAGA
102397339 AAA
1 AAA
102397342 AAGGAGACGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAGAAAGA
Found at i:102398480 original size:18 final size:19
Alignment explanation
Indices: 102398454--102398502 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
102398444 AGTTGTCAAG
102398454 GATGAGAAATG-AATATGA
1 GATGAGAAATGAAATATGA
*
102398472 GATGGGAAATGAAATATGA
1 GATGAGAAATGAAATATGA
*
102398491 AATGATGAAATG
1 GATGA-GAAATG
102398503 GGATATGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 10 0.38
19 10 0.38
20 6 0.23
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (19 bp):
GATGAGAAATGAAATATGA
Found at i:102421932 original size:41 final size:41
Alignment explanation
Indices: 102421872--102421955 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
102421862 GTCAAATTGA
* *
102421872 AAAAAAGAAAAGAAAATAATTCAATTTCAAATAGAAATAGG
1 AAAAAAGAAAAGAAAATAATCCAATTCCAAATAGAAATAGG
* * * * *
102421913 AAAAGAGAAGAGAGAATAATCCAATTCCAAATTGAAGTAGG
1 AAAAAAGAAAAGAAAATAATCCAATTCCAAATAGAAATAGG
102421954 AA
1 AA
102421956 TACAAAATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.58, C:0.07, G:0.17, T:0.18
Consensus pattern (41 bp):
AAAAAAGAAAAGAAAATAATCCAATTCCAAATAGAAATAGG
Found at i:102422530 original size:32 final size:32
Alignment explanation
Indices: 102422489--102422551 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
102422479 ATATAAAATT
*
102422489 GTTTGTTAATTCATATCAGAATGAGCCTGCTG
1 GTTTGTTAATTCATATCAGAATAAGCCTGCTG
*
102422521 GTTTGTTAATTCATATTAGAATAAGCCTGCT
1 GTTTGTTAATTCATATCAGAATAAGCCTGCT
102422552 AGTATGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (32 bp):
GTTTGTTAATTCATATCAGAATAAGCCTGCTG
Found at i:102427759 original size:30 final size:30
Alignment explanation
Indices: 102427701--102427761 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
102427691 TTCCTGAGCC
*
102427701 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATACAAAAGTT
* *
102427731 TAGGGGCAAAA-TGATAATTTTACCAAAGTT
1 TAGGGGCAAAAGTG-TAATTATACAAAAGTT
102427761 T
1 T
102427762 GTATTAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATACAAAAGTT
Found at i:102428469 original size:49 final size:49
Alignment explanation
Indices: 102428410--102428597 Score: 250
Period size: 49 Copynumber: 3.8 Consensus size: 49
102428400 TGAGGTCACG
* **
102428410 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * *
102428459 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* *
102428510 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* *
102428559 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
102428598 GCTTTAGCTA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 74 0.62
50 4 0.03
51 41 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:102428579 original size:100 final size:100
Alignment explanation
Indices: 102428405--102428597 Score: 341
Period size: 100 Copynumber: 1.9 Consensus size: 100
102428395 TATTGTGAGG
**
102428405 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* *
102428470 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTACAGGCTACTATGCGTACCAGATAACTTCGA
*
102428505 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
102428570 AAGTACAGGCTACTATGCGTACCAGATA
66 AAGTACAGGCTACTATGCGTACCAGATA
102428598 GCTTTAGCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTACAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:102433234 original size:15 final size:15
Alignment explanation
Indices: 102433172--102433234 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 15
102433162 CATAACATTT
* *
102433172 ATATAAAAAAAAGTA
1 ATATAATAAAATGTA
*
102433187 ATAT-A-AAAATGAA
1 ATATAATAAAATGTA
*
102433200 ACATAATAAAGAT-T-
1 ATATAATAAA-ATGTA
102433214 ATATAATAAAATGTA
1 ATATAATAAAATGTA
102433229 ATATAA
1 ATATAA
102433235 ACATATAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
13 11 0.29
14 12 0.32
15 13 0.34
16 2 0.05
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (15 bp):
ATATAATAAAATGTA
Found at i:102433264 original size:46 final size:42
Alignment explanation
Indices: 102433172--102433266 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
102433162 CATAACATTT
* *
102433172 ATATAAAAAAAAGTAATATAAAAATGAAACATAATAAAGATT
1 ATATAAAAAAAAGTAATATAAAAATGAAAAATAATAAAGATA
* * * *
102433214 ATATAATAAAATGTAATATAAACATATAAGAAAAATAATAGATATA
1 ATATAAAAAAAAGTAATATAAA-A-AT--GAAAAATAATAAAGATA
102433260 ATATAAA
1 ATATAAA
102433267 GTAACACATA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
42 20 0.48
43 1 0.02
44 2 0.05
46 19 0.45
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.26
Consensus pattern (42 bp):
ATATAAAAAAAAGTAATATAAAAATGAAAAATAATAAAGATA
Found at i:102433429 original size:16 final size:17
Alignment explanation
Indices: 102433398--102433431 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
102433388 TATATAATTA
102433398 AAAATAATACTTATAAT
1 AAAATAATACTTATAAT
*
102433415 AAAATAAT-TTTATAAT
1 AAAATAATACTTATAAT
102433431 A
1 A
102433432 TATAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATAATACTTATAAT
Found at i:102435452 original size:83 final size:83
Alignment explanation
Indices: 102434948--102435436 Score: 843
Period size: 83 Copynumber: 5.9 Consensus size: 83
102434938 CGATTTAAAT
* * *
102434948 CATCTTGAGTCTGTTTGAGATCATTTGAGAGTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
*
102435013 AGCACAAGGATGCTTAAAC
66 AGCACAAGGATGC-CAAAC
* *
102435032 TATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
*
102435097 GGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
* * *
102435115 CATCTTGAGTCTGTTTGAGAACATTTGAGACTCATATCTGCAAGGTCCTCGACTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
102435180 AGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
102435198 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
102435263 AGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
* *
102435281 CACCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCAATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
102435346 AGCACAAGGATGCCAAAC
66 AGCACAAGGATGCCAAAC
*
102435364 CATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
1 CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
*
102435429 AACACAAG
66 AGCACAAG
102435437 AACACCAAAT
Statistics
Matches: 383, Mismatches: 22, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
83 311 0.81
84 72 0.19
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (83 bp):
CATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTA
AGCACAAGGATGCCAAAC
Done.