Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 324 of 356
Found at i:104846396 original size:3 final size:3
Alignment explanation
Indices: 104846388--104846492 Score: 71
Period size: 3 Copynumber: 35.0 Consensus size: 3
104846378 TTTTTTACTA
104846388 TAT TAT TA- TAT TAT T-T TA- TAT T-T TAT TAT ATAT T-T ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT
* *
104846430 TAT TACA TAT TATT TAT TAT GTAT TAT TTT TA- TAT ATAT TAT TAT T-T
1 TAT TA-T TAT TA-T TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
104846477 ATAT TAT TAT TTT TAT
1 -TAT TAT TAT TAT TAT
104846493 ATTTAAATAT
Statistics
Matches: 82, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
2 12 0.15
3 54 0.66
4 16 0.20
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:104846408 original size:10 final size:10
Alignment explanation
Indices: 104846375--104846444 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 10
104846365 TTACATATTC
104846375 ATATT-TTTT
1 ATATTATTTT
104846384 ACTA-TATTATT
1 A-TATTATT-TT
104846395 ATATTATTTT
1 ATATTATTTT
104846405 ATATT-TTATT
1 ATATTATT-TT
104846415 ATA-TA-TTT
1 ATATTATTTT
104846423 ATATTATTATT
1 ATATTATT-TT
104846434 ACATATTATTT
1 --ATATTATTT
104846445 ATTATGTATT
Statistics
Matches: 50, Mismatches: 0, Indels: 19
0.72 0.00 0.28
Matches are distributed among these distances:
8 5 0.10
9 8 0.16
10 19 0.38
11 9 0.18
12 1 0.02
13 8 0.16
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (10 bp):
ATATTATTTT
Found at i:104846448 original size:48 final size:52
Alignment explanation
Indices: 104846355--104846487 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 52
104846345 AAAGTTCATT
* *
104846355 TATT-TATTTT-TTACATATTCATATT-TT-TTACTATATTATTATATTAT-
1 TATTATATTTTATTATATATTTATATTATTATTACTATATTATTATATTATG
104846402 T-TTATATTTTATTATATATTTATATTATTATTAC-ATATTATT-TATTATG
1 TATTATATTTTATTATATATTTATATTATTATTACTATATTATTATATTATG
*
104846451 TATTATTTTTATATATATTATTATTTATATTATTATT
1 TATTATATTT-TAT-TA-TA-TATTTATATTATTATT
104846488 TTTATATTTA
Statistics
Matches: 73, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
46 2 0.03
47 7 0.10
48 19 0.26
49 11 0.15
50 11 0.15
51 3 0.04
52 2 0.03
53 2 0.03
54 16 0.22
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.65
Consensus pattern (52 bp):
TATTATATTTTATTATATATTTATATTATTATTACTATATTATTATATTATG
Found at i:104850290 original size:27 final size:27
Alignment explanation
Indices: 104850259--104850323 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
104850249 AATTTGCTTC
104850259 TATTTAA-AAAT-ATATTTATATTATTT
1 TATTTAATAAATAATATTTATA-TATTT
**
104850285 TAATTTAATATTTAATATTTATATATTT
1 T-ATTTAATAAATAATATTTATATATTT
*
104850313 TATTTATTAAA
1 TATTTAATAAA
104850324 ATTTTAGATA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 1 0.03
27 13 0.42
28 8 0.26
29 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (27 bp):
TATTTAATAAATAATATTTATATATTT
Found at i:104850310 original size:15 final size:15
Alignment explanation
Indices: 104850270--104850312 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
104850260 ATTTAAAAAT
*
104850270 ATATTTATATTATTTT
1 ATATTTATA-TATTTA
104850286 A-ATTTA-ATATTTA
1 ATATTTATATATTTA
104850299 ATATTTATATATTT
1 ATATTTATATATTT
104850313 TATTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 6 0.25
14 6 0.25
15 11 0.46
16 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTATATATTTA
Found at i:104850319 original size:13 final size:13
Alignment explanation
Indices: 104850271--104850319 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
104850261 TTTAAAAATA
104850271 TATTTATATTATTT
1 TATTTATA-TATTT
104850285 TAATTTA-ATATTT
1 T-ATTTATATATTT
104850298 AATATTTATATATTT
1 --TATTTATATATTT
104850313 TATTTAT
1 TATTTAT
104850320 TAAAATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
13 12 0.39
14 7 0.23
15 12 0.39
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTATATATTT
Found at i:104850397 original size:21 final size:22
Alignment explanation
Indices: 104850373--104850415 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
104850363 ATTATAGTAG
104850373 TAATATATATG-ACTATAAATT
1 TAATATATATGTACTATAAATT
* * *
104850394 TAATTTTTATGTATTATAAATT
1 TAATATATATGTACTATAAATT
104850416 ACATAATATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (22 bp):
TAATATATATGTACTATAAATT
Found at i:104850429 original size:16 final size:17
Alignment explanation
Indices: 104850411--104850444 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
104850401 TATGTATTAT
*
104850411 AAATTACATAATATATAA
1 AAATAACATAATATAT-A
104850429 AAATAACATAATATAT
1 AAATAACATAATATAT
104850445 TACAAACTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAACATAATATATA
Found at i:104854860 original size:27 final size:27
Alignment explanation
Indices: 104854830--104854883 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
104854820 GAAATAAGAC
*
104854830 ACAAGTTTCATGATATATTAATTTTAT
1 ACAAGTTTCATGATATACTAATTTTAT
104854857 ACAAGTTTCATGATATACTAATTTTAT
1 ACAAGTTTCATGATATACTAATTTTAT
104854884 TTAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (27 bp):
ACAAGTTTCATGATATACTAATTTTAT
Found at i:104856998 original size:39 final size:39
Alignment explanation
Indices: 104856944--104857023 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
104856934 ACTCGGTAAG
*
104856944 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGTATTT
1 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
104856983 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
1 TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
104857022 TT
1 TT
104857024 CAAAACACGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (39 bp):
TTAGTGCACAACACTTCGTATCTCCGAGAATAAGCATTT
Found at i:104858142 original size:28 final size:27
Alignment explanation
Indices: 104858109--104858165 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
104858099 TGTACACAAT
*
104858109 ATATATAATATATTA-AAAATATATATAC
1 ATATATAATAT-TTATAAAA-AAATATAC
104858137 ATATATAATATTTATAAAAAAATATAC
1 ATATATAATATTTATAAAAAAATATAC
104858164 AT
1 AT
104858166 GGTGTAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
ATATATAATATTTATAAAAAAATATAC
Found at i:104861527 original size:16 final size:15
Alignment explanation
Indices: 104861506--104861553 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
104861496 GATGTGAATA
104861506 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
104861522 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
104861537 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
104861553 A
1 A
104861554 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:104861529 original size:24 final size:24
Alignment explanation
Indices: 104861502--104861557 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
104861492 TAATGATGTG
*
104861502 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
104861526 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
104861550 AATAATAA
1 AATAATAA
104861558 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:104861536 original size:8 final size:8
Alignment explanation
Indices: 104861502--104861553 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
104861492 TAATGATGTG
*
104861502 AATAATAA
1 AATATTAA
104861510 AATATATAA
1 AATAT-TAA
104861519 AATA-TAA
1 AATATTAA
104861526 AATATTAA
1 AATATTAA
*
104861534 AATATCAA
1 AATATTAA
*
104861542 AATATTAG
1 AATATTAA
104861550 AATA
1 AATA
104861554 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:104861722 original size:20 final size:20
Alignment explanation
Indices: 104861670--104861726 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
104861660 ATACTACATC
*
104861670 AATATGTACATATATAAAAAA
1 AATATGTACATA-ATATAAAA
* * *
104861691 AATACGT-GATAATATTAAA
1 AATATGTACATAATATAAAA
104861710 AATATGTACATAATATA
1 AATATGTACATAATATA
104861727 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AATATGTACATAATATAAAA
Found at i:104861768 original size:22 final size:24
Alignment explanation
Indices: 104861705--104861769 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
104861695 CGTGATAATA
*
104861705 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
104861730 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
104861753 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
104861770 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:104861816 original size:23 final size:24
Alignment explanation
Indices: 104861790--104861921 Score: 73
Period size: 23 Copynumber: 5.5 Consensus size: 24
104861780 AAAAAAAAAA
104861790 ATATA-AATAATATAATATTAAAG
1 ATATATAATAATATAATATTAAAG
* * * *
104861813 ATATATACATAAAATAGTATAAAAT
1 ATATATA-ATAATATAATATTAAAG
104861838 ATATATATACGTAATATAGA-ATTTAAA-
1 ATATATA-A--TAATATA-ATA-TTAAAG
** *
104861865 ATATA-CCTAATAT-AT-TAAAAG
1 ATATATAATAATATAATATTAAAG
104861886 A-ATATATATAATATAATATT-AAG
1 ATATATA-ATAATATAATATTAAAG
*
104861909 AAATATAATAATA
1 ATATATAATAATA
104861922 ACAAAAAAGG
Statistics
Matches: 82, Mismatches: 14, Indels: 26
0.67 0.11 0.21
Matches are distributed among these distances:
20 7 0.09
21 2 0.02
22 6 0.07
23 23 0.28
24 7 0.09
25 21 0.26
27 12 0.15
28 4 0.05
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATAATAATATAATATTAAAG
Found at i:104861818 original size:25 final size:24
Alignment explanation
Indices: 104861789--104861921 Score: 71
Period size: 25 Copynumber: 5.5 Consensus size: 24
104861779 TAAAAAAAAA
104861789 AATATAAATAATATAATATTAAAG
1 AATATAAATAATATAATATTAAAG
* * * * *
104861813 ATATATACATAAAATAGTATAAAAT
1 A-ATATAAATAATATAATATTAAAG
* *
104861838 ATATATATACGTAATATAGA-ATTTAA-
1 A-ATATA-A-ATAATATA-ATATTAAAG
** *
104861864 AATATACCTAATAT-AT-TAAAAG
1 AATATAAATAATATAATATTAAAG
*
104861886 AATATATATAATATAATATT-AAG
1 AATATAAATAATATAATATTAAAG
104861909 AA-ATATAATAATA
1 AATATA-AATAATA
104861922 ACAAAAAAGG
Statistics
Matches: 81, Mismatches: 19, Indels: 19
0.68 0.16 0.16
Matches are distributed among these distances:
21 4 0.05
22 15 0.19
23 19 0.23
24 2 0.02
25 30 0.37
26 1 0.01
27 10 0.12
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
AATATAAATAATATAATATTAAAG
Found at i:104862447 original size:30 final size:30
Alignment explanation
Indices: 104862411--104862585 Score: 287
Period size: 30 Copynumber: 5.8 Consensus size: 30
104862401 TAGGTACAAG
* *
104862411 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
104862441 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
104862471 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
* *
104862501 TGGTGGTGGAAAAAGAATGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
104862531 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
104862561 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
104862586 TGAGAAAAGT
Statistics
Matches: 133, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 133 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:104862504 original size:60 final size:60
Alignment explanation
Indices: 104862411--104862585 Score: 323
Period size: 60 Copynumber: 2.9 Consensus size: 60
104862401 TAGGTACAAG
*
104862411 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
104862471 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAATGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
104862531 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
104862586 TGAGAAAAGT
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 111 1.00
ACGTcount: A:0.23, C:0.03, G:0.49, T:0.25
Consensus pattern (60 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:104863456 original size:77 final size:77
Alignment explanation
Indices: 104863297--104863548 Score: 366
Period size: 77 Copynumber: 3.3 Consensus size: 77
104863287 ATGTGAACCC
* * *
104863297 AAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
104863359 CAGCGTGTGACCC
65 CAGCACGTGAGCA
*
104863372 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
104863437 AGCACGTGAGCA
66 AGCACGTGAGCA
* * *
104863449 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAACTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
104863514 AGCACGTGAGCA
66 AGCACGTGAGCA
*
104863526 AAGGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
104863549 AAGTAGATTT
Statistics
Matches: 160, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
75 31 0.19
77 128 0.80
78 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:104863650 original size:16 final size:16
Alignment explanation
Indices: 104863631--104863673 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 16
104863621 TGAAAAATAT
104863631 AAATTGAAAAAAACAG
1 AAATTGAAAAAAACAG
*
104863647 AAATTG--AAAAGCAG
1 AAATTGAAAAAAACAG
104863661 AAATT-AAAAAAAC
1 AAATTGAAAAAAAC
104863674 CTCAGCATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
14 12 0.52
15 5 0.22
16 6 0.26
ACGTcount: A:0.67, C:0.07, G:0.12, T:0.14
Consensus pattern (16 bp):
AAATTGAAAAAAACAG
Found at i:104863656 original size:14 final size:14
Alignment explanation
Indices: 104863620--104863670 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
104863610 GAGTTGATTT
* *
104863620 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
104863634 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
104863650 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
104863664 TT-AAAAA
1 TTGAAAAA
104863671 AACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:104863783 original size:73 final size:75
Alignment explanation
Indices: 104863693--104863894 Score: 309
Period size: 76 Copynumber: 2.7 Consensus size: 75
104863683 TGAGCCAAGA
* *
104863693 CTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
104863756 TGTCCCGAGG
66 TGTCCCGAGG
* * *
104863766 CTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAA-TTGAAAATACCTCAGC
*
104863831 GTGTCCTGAGG
65 GTGTCCCGAGG
* *
104863842 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAA
104863895 GAACAGAAAT
Statistics
Matches: 115, Mismatches: 11, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
73 26 0.23
74 1 0.01
75 20 0.17
76 68 0.59
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
TGTCCCGAGG
Found at i:104863850 original size:76 final size:74
Alignment explanation
Indices: 104863650--104863891 Score: 299
Period size: 76 Copynumber: 3.2 Consensus size: 74
104863640 AAAACAGAAA
* * * * *
104863650 TTGAAAAGCAGAAATTAAAAAAACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
104863715 GAGTT-A-ATTT
63 GAGTTGATTTTT
* * * *
104863725 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGA
104863790 GTTGATTTTT
65 GTTGATTTTT
104863800 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
104863865 AGTTGATTTTT
64 AGTTGATTTTT
* **
104863876 TTTACGAACAGAAATT
1 TTGAAAAACAGAAATT
104863892 GAAGAACAGA
Statistics
Matches: 145, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
73 33 0.23
74 1 0.01
75 45 0.31
76 66 0.46
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:104863900 original size:14 final size:14
Alignment explanation
Indices: 104863881--104863908 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
104863871 TTTTTTTTAC
104863881 GAACAGAAATTGAA
1 GAACAGAAATTGAA
104863895 GAACAGAAATTGAA
1 GAACAGAAATTGAA
104863909 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:104863954 original size:91 final size:88
Alignment explanation
Indices: 104863800--104863984 Score: 248
Period size: 89 Copynumber: 2.1 Consensus size: 88
104863790 GTTGATTTTT
* *
104863800 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
104863865 AGTTGATTTTTTTTACGAACAGAAA
66 AGTT-A-ATTTTTGACAAACAGAAA
* *
104863890 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
104863953 ATGAGTTAATTTTTGACAAACAGAAA
63 ATGAGTTAATTTTTGACAAACAGAAA
104863979 TTGAAA
1 TTGAAA
104863985 TTACCTCAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
89 34 0.40
90 14 0.17
91 34 0.40
92 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTGACAAACAGAAA
Found at i:104864023 original size:73 final size:74
Alignment explanation
Indices: 104863890--104864058 Score: 232
Period size: 73 Copynumber: 2.3 Consensus size: 74
104863880 CGAACAGAAA
* *
104863890 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
104863955 GAGTTAATTT
65 GAGTTAATTT
* ** * *
104863965 TTGACAAACAGAAATTGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTCACCTTTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
*
104864029 AGTTGATTT
66 AGTTAATTT
* *
104864038 TTGAAAAATATAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
104864059 AACAGAAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
73 56 0.68
75 26 0.32
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTT
Found at i:104864057 original size:14 final size:14
Alignment explanation
Indices: 104864038--104864087 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
104864028 GAGTTGATTT
* *
104864038 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
104864052 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
104864067 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
104864081 TT-AAAAA
1 TTGAAAAA
104864088 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:104864192 original size:78 final size:75
Alignment explanation
Indices: 104864067--104864308 Score: 307
Period size: 78 Copynumber: 3.2 Consensus size: 75
104864057 AAAACAGAAA
* * *
104864067 TTGAAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCACAATA
104864131 TGAGTTGATTTTT
64 TGAGTTGA-TTTT
* * ** *
104864144 TTGACAAACAGAAATTGAAAAATACCTCAGTGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCACAATA
104864209 TGAGTTGATTTT
64 TGAGTTGATTTT
*
104864221 TTGAAAAATAGAAATTG-AAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCACAATATG
1 TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCACAATATG
104864282 AGTTGA-TTT
66 AGTTGATTTT
*
104864291 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
104864309 GCAGAAGTTG
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
70 18 0.12
71 31 0.21
74 1 0.01
76 14 0.10
77 33 0.23
78 49 0.34
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAAACACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCACAATATG
AGTTGATTTT
Found at i:104864260 original size:417 final size:409
Alignment explanation
Indices: 104863585--104864376 Score: 1173
Period size: 417 Copynumber: 1.9 Consensus size: 409
104863575 TGTGAACCCA
104863585 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
1 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
*
104863650 TTGAAAAGCAGAAATTAAAAAAACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCGCAATAT
66 TTGAAAAGCAGAAATTAAAAAAACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCACAATAT
* * *
104863715 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTT
131 GAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCT
* *
104863780 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTC
196 CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAACACCTCAGCATG--CTGAGGCTC
* * **
104863845 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAA
259 AACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAAACAGAAATTG-AG--CAGAAATTGAAA
104863910 AGACCTCAGCATGTGAG-C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
319 AGACCTCA--ATG-G-GTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
104863973 CAGAAATTGAAATTACCTCAGCGTGTCCCG
380 CAGAAATTGAAATTACCTCAGCGTGTCCCG
* *
104864003 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAAAACAGAAA
1 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
* *
104864067 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATAT
66 TTGAAAAGCAGAAATTAAAAAAACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCACAATAT
* * *
104864132 GAGTTGATTTTTTTGACAAACAGAAATTGAAAAATACCTCAGTGTGTAAGCCAAGGCTCAACTCA
131 GAGTT-A-ATTTTTGACAAACAGAAATTG-AAAATACCTCAGCGTGT--CCCAAGGCTCAACTCA
* *
104864197 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAA-TTGAAAACACCTCAGCATG-TGAGG
191 CCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAACACCTCAGCATGCTGAGG
* * *
104864259 CTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAGTTGAAAAT
256 CTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGCAGAAATTGAAAAG
* * *
104864324 ACCTCAATGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
321 ACCTCAATGGGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
104864377 TGATGATAAA
Statistics
Matches: 342, Mismatches: 25, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
408 1 0.00
409 2 0.01
410 39 0.11
412 18 0.05
414 2 0.01
415 16 0.05
417 112 0.33
418 51 0.15
419 20 0.06
420 31 0.09
421 17 0.05
422 33 0.10
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (409 bp):
AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAACAGAAA
TTGAAAAGCAGAAATTAAAAAAACCTCAGCATGTGAGCCAAGACTCAACTCACCTCTCACAATAT
GAGTTAATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAACACCTCAGCATGCTGAGGCTCAA
CTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAGCAGAAATTGAAAAGACCTC
AATGGGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAA
ATTACCTCAGCGTGTCCCG
Found at i:104864279 original size:71 final size:71
Alignment explanation
Indices: 104864067--104864472 Score: 302
Period size: 71 Copynumber: 5.3 Consensus size: 71
104864057 AAAACAGAAA
* * *
104864067 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCACAATAT
104864132 GAGTTGATTTTT
61 GAGTTGA-TTTT
* ** *
104864144 TTGACAAACAGAAATTGAAAAATACCTCAGTGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTG-AAAATACCTCAGCATGT--G---AGGCTCAACTCACCTCTCACAATA
104864209 TGAGTTGATTTT
60 TGAGTTGATTTT
* *
104864221 TTGAAAAATAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCACAATATGAGTT
104864286 GA-TTT
66 GATTTT
** * *
104864291 TTGAAAAACATAAATTGAGCAGAAGTTGAAAATACCTCAATGGGTCTTGAGGTTCAACTCACCTC
1 TTGAAAAAC--------AG-A-AA-TTGAAAATACCTC-A-GCAT-GTGAGGCTCAACTCACCTC
*
104864356 TCGCAATATGAGTTGATTTT
52 TCACAATATGAGTTGATTTT
** * *
104864376 TTG---ATGATAAATTGAAAATACCTCA--ATGTGACTTGAGTTTCAACTCACCTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGA---G-G-CTCAACTCACCTCTCACAATAT
104864436 GAGTTGATTTT
61 GAGTTGATTTT
104864447 TTGAATTAAAACAGAAATTGAAAATA
1 TTG-A--AAAACAGAAATTGAAAATA
104864473 GAAATGGAAA
Statistics
Matches: 268, Mismatches: 29, Indels: 64
0.74 0.08 0.18
Matches are distributed among these distances:
66 3 0.01
67 1 0.00
69 1 0.00
70 13 0.05
71 79 0.29
72 2 0.01
73 1 0.00
74 2 0.01
76 14 0.05
77 47 0.18
78 44 0.16
79 2 0.01
80 4 0.01
81 12 0.04
82 2 0.01
83 3 0.01
84 32 0.12
85 6 0.02
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (71 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTTT
Found at i:104864419 original size:155 final size:155
Alignment explanation
Indices: 104864189--104864541 Score: 441
Period size: 155 Copynumber: 2.2 Consensus size: 155
104864179 AAGCCAAGGC
104864189 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATA-AAATTGAAAACACCTCA-CATG
* *
104864254 TGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTTTG-A-AAAACATAAATTG-AGCAGAA
64 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAA
* * * *
104864315 GTTGAAAATACCTCAATGGGTCTTGAGGT
129 ATGGAAAACACCTC-A-GCGTCTTGAGGT
** *
104864344 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATGAT-AAATTGAAAATACCTCA-ATGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTCACATGTG
*
104864406 ACTTGAGTTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAA
66 A---G-G-CTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAA-TAAAACAGAAATTG-AAA
*
104864471 TAGAAATGGAAAACACCTCAGCGTCTTGAGGT
124 CAGAAATGGAAAACACCTCAGCGTCTTGAGGT
*
104864503 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA
104864542 CACATAAATT
Statistics
Matches: 172, Mismatches: 13, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
150 6 0.03
152 16 0.09
153 1 0.01
154 4 0.02
155 63 0.37
156 6 0.03
157 1 0.01
159 50 0.29
160 8 0.05
161 17 0.10
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (155 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAAAATTGAAAACACCTCACATGTG
AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATAAAACAGAAATTGAAACAGAAAT
GGAAAACACCTCAGCGTCTTGAGGT
Found at i:104864572 original size:88 final size:87
Alignment explanation
Indices: 104864407--104864573 Score: 203
Period size: 88 Copynumber: 1.9 Consensus size: 87
104864397 CTCAATGTGA
* * * *
104864407 CTTGAGTTTCAACTCACCTCTCACAATATGAGTTGATTTTTTGAATTAAAACAGAAATTGAAAAT
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAA-TAAAACAGAAATTAAAAAA
*
104864472 AGAAATGGAAAACACCTCAGCGT
65 AGAAATGAAAAACACCTCAGCGT
* * *
104864495 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-A-AACACATAAATTAAAAAA
1 CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGA-TTTTTTGAATAAAACAGAAATT--AAAA
*
104864558 AAAGAAATTAAAAACA
63 AAAGAAATGAAAAACA
104864574 GAATTTGAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 10 0.15
88 50 0.75
89 7 0.10
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (87 bp):
CTTGAGGTTCAACTCACCTCTCACAATATGAGCTGATTTTTTGAATAAAACAGAAATTAAAAAAA
GAAATGAAAAACACCTCAGCGT
Found at i:104864696 original size:75 final size:74
Alignment explanation
Indices: 104864565--104864883 Score: 351
Period size: 77 Copynumber: 4.3 Consensus size: 74
104864555 AAAAAAGAAA
* * ** * *
104864565 TTAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCCGAGACTCAACTCATCTCTCGCAATAT
1 TTAAAAACAAAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATAT
*
104864629 GAGTTGATTCTT
63 GAGTTGATTTTT
104864641 TTAAAAAGCAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTAAAAA-CAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
104864706 GTTGATTTTT
65 GTTGATTTTT
* * *
104864716 TTGATAAAA-ATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TT-A-AAAACA-A-AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
104864780 TGAGTTGA-TTTT
62 TGAGTTGATTTTT
* * * ** *
104864792 TGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
104864855 TTGATTTTT
66 TTGATTTTT
** * *
104864864 TTTGAAACATAAATTAAAAA
1 TTAAAAACAAAAATTGAAAA
104864884 AACGAAAATT
Statistics
Matches: 212, Mismatches: 23, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
71 36 0.17
72 18 0.08
73 16 0.08
74 4 0.02
75 43 0.20
76 14 0.07
77 80 0.38
78 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTAAAAACAAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:104864763 original size:77 final size:76
Alignment explanation
Indices: 104864607--104865023 Score: 431
Period size: 77 Copynumber: 5.4 Consensus size: 76
104864597 TGGCCCGAGA
* * *
104864607 CTCAACTCATCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGCAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
104864671 GTGTCCCGAGG
66 GTGTCCTGAGG
* * * *
104864682 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAAAACAAAAATTGAAAATACCTCAG
104864747 CGTGTCCTGAGG
65 CGTGTCCTGAGG
* *
104864759 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-ACAAACAAAAATTGAAATTACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
*
104864821 --GTCTTGAGG
66 GTGTCCTGAGG
* * **
104864830 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG-AA-A-AAA--CAAAAATTG--AA---
104864895 AAAATACCTCAGCGTGTCCTGAGG
55 --AATACCTCAGCGTGTCCTGAGG
* ** *
104864919 CTCAACTCACCTCTCGTAATATGAGTTGA---AATT-AAAACACAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
* *
104864980 GTGCCCCGAGG
66 GTGTCCTGAGG
* *
104864991 CTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
104865024 GAAAAAGTAG
Statistics
Matches: 283, Mismatches: 36, Indels: 46
0.78 0.10 0.13
Matches are distributed among these distances:
71 36 0.13
72 46 0.16
73 21 0.07
74 6 0.02
75 40 0.14
76 2 0.01
77 63 0.22
78 3 0.01
79 6 0.02
80 6 0.02
81 2 0.01
82 3 0.01
83 2 0.01
85 2 0.01
87 10 0.04
89 35 0.12
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAACAAAAATTGAAAATACCTCAGC
GTGTCCTGAGG
Found at i:104864992 original size:72 final size:73
Alignment explanation
Indices: 104864874--104865015 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 73
104864864 TTTGAAACAT
* * * *
104864874 AAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
104864939 ATGAGTTG
66 ATGAGTTG
* *
104864947 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAAT
1 AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
104865011 ATGAG
66 ATGAG
104865016 CTGATTTTGA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 58 0.92
73 5 0.08
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (73 bp):
AAATTAAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTG
Found at i:104865042 original size:160 final size:157
Alignment explanation
Indices: 104864607--104865029 Score: 483
Period size: 160 Copynumber: 2.7 Consensus size: 157
104864597 TGGCCCGAGA
* ** *
104864607 CTCAACTCATCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TAATTGAAAAA-CAAAAATTGAAAATACCTCAGC-
* ** *
104864672 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------TTGA-TAAAAATA-G
63 -GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAACG
* *
104864729 -AATTTGAAAATATCTCAGCGTGTCCTGAGG
127 AAAATTGAAAATACCTCAGCGTGTCCTGAGG
** * *
104864759 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
** * * *
104864824 TTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGA
66 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTTGAAAAATAAATTAAAAAAACGA
104864889 AAATTGAAAATACCTCAGCGTGTCCTGAGG
128 AAATTGAAAATACCTCAGCGTGTCCTGAGG
*
104864919 CTCAACTCACCTCTCGTAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGT
*
104864982 GCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-TTTTGAAAAA
65 --CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAA
104865030 GTAGAAATTA
Statistics
Matches: 232, Mismatches: 24, Indels: 25
0.83 0.09 0.09
Matches are distributed among these distances:
148 35 0.15
150 21 0.09
151 13 0.06
152 28 0.12
157 11 0.05
158 10 0.04
159 27 0.12
160 56 0.24
161 31 0.13
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (157 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAGCGTC
CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAATAAATTAAAAAAACGAAAA
TTGAAAATACCTCAGCGTGTCCTGAGG
Found at i:104865394 original size:72 final size:73
Alignment explanation
Indices: 104865169--104865522 Score: 374
Period size: 72 Copynumber: 4.7 Consensus size: 73
104865159 AGTGTGTAAT
* * * * *
104865169 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TATTTT-GAAAACAGAAATTGAAATTAC
* *
104865234 CTCAACATGTGAAC
63 CTCAGC--GTG-TC
* *
104865248 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGA----TATTTTGAAAACAGAAATTGAAATTA
*
104865312 CCTCAACGTGTC
62 CCTCAGCGTGTC
* ** *
104865324 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAATAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
104865388 AGCGTGTC
66 AGCGTGTC
** * * *
104865396 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAA-AACAGAAATTGAAATTACCT
104865461 CAGCGTGTC
65 CAGCGTGTC
* * *
104865470 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG--ATTTTGAAAAACAAAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTG-AAAACAGAAATT
104865523 AAAAGGCTTA
Statistics
Matches: 247, Mismatches: 22, Indels: 19
0.86 0.08 0.07
Matches are distributed among these distances:
72 79 0.32
73 8 0.03
74 59 0.24
76 1 0.00
77 34 0.14
78 31 0.13
79 27 0.11
80 8 0.03
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
AGCGTGTC
Found at i:104865476 original size:74 final size:74
Alignment explanation
Indices: 104865169--104865508 Score: 416
Period size: 74 Copynumber: 4.5 Consensus size: 74
104865159 AGTGTGTAAT
*
104865169 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-AAAAACAGAAATTGAAAATAC
*
104865234 CTCAACATGTGAAC
64 CTCAAC--GTG-TC
* *
104865248 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTAAAAACAGAAATTGAAAATA
104865312 CCTCAACGTGTC
63 CCTCAACGTGTC
* ** * * * * *
104865324 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAATAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
*
104865387 CAGCGTGTC
66 CAACGTGTC
** * *
104865396 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
*
104865461 CAGCGTGTC
66 CAACGTGTC
*
104865470 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
104865509 GAAAAACAAA
Statistics
Matches: 236, Mismatches: 20, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
72 66 0.28
74 69 0.29
76 1 0.00
77 34 0.14
78 31 0.13
79 27 0.11
80 8 0.03
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
CAACGTGTC
Found at i:104865495 original size:146 final size:148
Alignment explanation
Indices: 104865169--104865526 Score: 422
Period size: 146 Copynumber: 2.4 Consensus size: 148
104865159 AGTGTGTAAT
* * *
104865169 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTT-GAAAACAGAAATTGAAAATAC
104865234 CTCAACATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTGAAAACA
62 CTCAACA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTTTTGAAAACA
104865299 GAAATTGAAAATACCTCAACGTGTC
124 GAAATTGAAAATACCTCAACGTGTC
* ** * * *
104865324 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* * ** *
104865389 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTT-AACAACAGAAAT
66 ACAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAA-AACAGAAAT
* *
104865450 TGAAATTACCTCAGCGTGTC
129 TGAAAATACCTCAACGTGTC
* *
104865470 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
104865527 GGCTTAACTC
Statistics
Matches: 176, Mismatches: 24, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
145 11 0.06
146 73 0.41
148 2 0.01
149 33 0.19
151 23 0.13
152 4 0.02
155 30 0.17
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (148 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
ACAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTG
AAAATACCTCAACGTGTC
Found at i:104865674 original size:71 final size:70
Alignment explanation
Indices: 104865526--104865701 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 70
104865516 AAAAATTAAA
* * * * * * **
104865526 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
104865590 CCCCG
66 CCCCG
*
104865595 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
104865660 GTCTTG
65 GCCCCG
104865666 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
104865702 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:104888422 original size:62 final size:62
Alignment explanation
Indices: 104888278--104888398 Score: 228
Period size: 62 Copynumber: 2.0 Consensus size: 62
104888268 CATACCAATA
104888278 ACACAAAGATATACACTT--AAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
1 ACACAAAGATATACACTTAAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
104888338 ACACAAAGATATACACTTAAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
1 ACACAAAGATATACACTTAAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
104888399 TAGAAACATA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
60 18 0.31
62 41 0.69
ACGTcount: A:0.55, C:0.19, G:0.07, T:0.20
Consensus pattern (62 bp):
ACACAAAGATATACACTTAAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
Found at i:104890828 original size:12 final size:12
Alignment explanation
Indices: 104890811--104890841 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
104890801 CCTCGCACGC
104890811 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
104890823 CCGTGTGCTAGG
1 CCGTGTGCCAGG
104890835 CCGTGTG
1 CCGTGTG
104890842 AAAACTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:104894064 original size:16 final size:18
Alignment explanation
Indices: 104894029--104894066 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
104894019 ATCCTTATTT
*
104894029 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
104894047 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
104894063 AAAT
1 AAAT
104894067 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:104895295 original size:20 final size:20
Alignment explanation
Indices: 104895252--104895302 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
104895242 ATACATATTA
* *
104895252 TCACTGTTCATGATTTCACT
1 TCACTGTTCATGACTTCACC
* *
104895272 TCACTGTTCATGGCTTGACC
1 TCACTGTTCATGACTTCACC
*
104895292 TCACTATTCAT
1 TCACTGTTCAT
104895303 AGGAATGGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (20 bp):
TCACTGTTCATGACTTCACC
Found at i:104895935 original size:5 final size:6
Alignment explanation
Indices: 104895918--104895942 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
104895908 ATTTCCTCTA
104895918 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
104895943 GTGTTGGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:104899876 original size:23 final size:23
Alignment explanation
Indices: 104899850--104899901 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
104899840 TTGATTTGAA
*
104899850 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
104899873 ATTTAGAATTATCTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
104899896 ATTTAG
1 ATTTAG
104899902 GAAAAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATCTAGTGATAAT
Found at i:104900762 original size:18 final size:18
Alignment explanation
Indices: 104900739--104900802 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
104900729 GCTTAAAAAA
*
104900739 TATTTTATTTATTCCATT
1 TATTTTATTTATTACATT
* *
104900757 TATTTTATTTTCTTAAATT
1 TATTTTA-TTTATTACATT
* *
104900776 TA-TTTATTTTTTGCATT
1 TATTTTATTTATTACATT
*
104900793 TGTTTTATTT
1 TATTTTATTT
104900803 TATTTTCCGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 9 0.24
18 18 0.49
19 10 0.27
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (18 bp):
TATTTTATTTATTACATT
Found at i:104905892 original size:22 final size:21
Alignment explanation
Indices: 104905866--104905926 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 21
104905856 ATTAAATGTA
104905866 CAAGATTACAAGATCATATCTT
1 CAAGATTAC-AGATCATATCTT
* *
104905888 CAAGATTGCATATCATATC-T
1 CAAGATTACAGATCATATCTT
* *
104905908 -AAGATTGCATATCATATCT
1 CAAGATTACAGATCATATCT
104905927 AAGATTGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 18 0.50
20 1 0.03
21 9 0.25
22 8 0.22
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (21 bp):
CAAGATTACAGATCATATCTT
Found at i:104905913 original size:19 final size:19
Alignment explanation
Indices: 104905878--104905939 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
104905868 AGATTACAAG
104905878 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
104905899 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
104905918 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
104905937 ATC
1 ATC
104905940 CTTAAGATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:104906607 original size:171 final size:171
Alignment explanation
Indices: 104906379--104906942 Score: 774
Period size: 171 Copynumber: 3.3 Consensus size: 171
104906369 TAAACACGTG
* ** * *
104906379 AAAGCCAAATCTGC-ATGTCTTCGATTTACTCCTTGTGAACACAAG-GTGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCC-AATCATCTTGGA
* * *
104906442 TCTGCTTCAGTA-AATCATCTGAA-GTTAGATCAGCTATGTATCTGCTCTCTGTCGAAATGGAGA
65 TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTA-CTGCTCTC-GTCGAAATGGAGA
* *
104906505 TGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTA
128 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATC-A
104906550 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGT-AACACAAGAATGCCAATCATCTTGGAT
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAATCATCTTGGAT
* * *
104906614 CTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCAAAATAGAGAT
66 CTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTA-CTGCTCT-CGTCGAAATGGAGAT
*
104906679 GCCAGATCTGTTATC-TGGATCTGCTTTGGTGTGAGAACATCG
129 GCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCA
** *
104906721 AAAGTCAAATCTATTATGTCTTCGATTTGTT-CTTGTAAACACAA-AATGCAAATCATCTTGGAT
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAATCATCTTGGAT
* *
104906784 CTGATTCAATATAAACAT-TGAAGGTTAGACCTGCTATGTACTGCTCTCGTCGAAATGGAGATGC
66 CTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACTGCTCTCGTCGAAATGGAGATGC
104906848 CAGATCT-TTATCTTGGATCTGC-TTGGTGTGAGAACATCCA
131 CAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACAT-CA
* * * *
104906888 AAA-TCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAATC
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAATC
104906943 TGCTATCTTC
Statistics
Matches: 353, Mismatches: 30, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
166 44 0.12
167 46 0.13
168 15 0.04
169 22 0.06
170 38 0.11
171 80 0.23
172 59 0.17
173 48 0.14
174 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (171 bp):
AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAATCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACTGCTCTCGTCGAAATGGAGATGC
CAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCA
Found at i:104907071 original size:44 final size:44
Alignment explanation
Indices: 104906895--104907200 Score: 204
Period size: 44 Copynumber: 7.1 Consensus size: 44
104906885 CCAAAATCAG
* *
104906895 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCC-A
1 ATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
104906940 ATCTGCTATCTTCAAT-TG-T-CCTATAAACATAGGGATG-CAT
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* *** * ** * * * * *
104906980 GT-TAAAATCTTTGATCTGTTTGCTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
104907023 ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
104907067 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * * *
104907109 ATGCTGAAATCTTCGATTTGCTCACTGTAAGCACA-GGAGTGTCAG
1 AT-CTGCTATCTTCGATCTGTTCCCTATAAACACAGGGA-TGCCAA
* *
104907154 AT-TGCTATCTTCGATCTATTTCCCTATAAACA-AGAGATGCCAA
1 ATCTGCTATCTTCGATCT-GTTCCCTATAAACACAGGGATGCCAA
104907197 ATCT
1 ATCT
104907201 TGTTTCTTGG
Statistics
Matches: 195, Mismatches: 51, Indels: 31
0.70 0.18 0.11
Matches are distributed among these distances:
39 9 0.05
40 19 0.10
41 2 0.01
42 20 0.10
43 56 0.29
44 79 0.41
45 10 0.05
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:104907166 original size:130 final size:126
Alignment explanation
Indices: 104906891--104907200 Score: 408
Period size: 131 Copynumber: 2.4 Consensus size: 126
104906881 ACATCCAAAA
* *
104906891 TCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCC-AATCTGCTATCTTCAA
1 TCAGATCTGCTA--TCTTCGATCTGTTCCCTATAAACA-AGGGATGCCAAATCTGCTATCTTCAA
* * * * **
104906955 TTGTCCTATAAACATAGGGATGCATGTTAAAATCTTTGATCTGTTTGCTGTAAGCACAGGAATG
63 TTGTCCTATAAACACAGGGATGCATGCTAAAATCTTCGATCTGCTCACTGTAAGCACAGGAATG
104907019 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACA-AGGGATGCCAAATCTGCTATCTTCAA-T
* * *
104907084 TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATTTGCTCACTGTAAGCACAGGAGT
64 TG-T-CCTATAAACACAGGGATG-CATGCTAAAATCTTCGATCTGCTCACTGTAAGCACAGGAAT
104907149 G
126 G
* *
104907150 TCAGAT-TGCTATCTTCGATCTATTTCCCTATAAACAAGAGATGCCAAATCT
1 TCAGATCTGCTATCTTCGATCT-GTTCCCTATAAACAAGGGATGCCAAATCT
104907201 TGTTTCTTGG
Statistics
Matches: 162, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
126 31 0.19
127 16 0.10
128 15 0.09
129 1 0.01
130 46 0.28
131 53 0.33
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (126 bp):
TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACAAGGGATGCCAAATCTGCTATCTTCAATTG
TCCTATAAACACAGGGATGCATGCTAAAATCTTCGATCTGCTCACTGTAAGCACAGGAATG
Found at i:104908106 original size:15 final size:16
Alignment explanation
Indices: 104908086--104908117 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
104908076 TTGGCCTCTC
104908086 TATTTTTTT-TATTTT
1 TATTTTTTTCTATTTT
104908101 TATTTTTTTCTATTTT
1 TATTTTTTTCTATTTT
104908117 T
1 T
104908118 CTTCTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TATTTTTTTCTATTTT
Found at i:104919647 original size:12 final size:12
Alignment explanation
Indices: 104919627--104919662 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
104919617 TGGGATATGC
*
104919627 AATGTATGAATG
1 AATGCATGAATG
104919639 AATGCATGAATG
1 AATGCATGAATG
104919651 AATGCATGAATG
1 AATGCATGAATG
104919663 TCAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:104921265 original size:8 final size:8
Alignment explanation
Indices: 104921231--104921290 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
104921221 TAATGATGTG
*
104921231 AATAATAA
1 AATATTAA
104921239 AATATATAA
1 AATAT-TAA
104921248 AATA-TAA
1 AATATTAA
104921255 AATATTAA
1 AATATTAA
*
104921263 AATATCAA
1 AATATTAA
*
104921271 AATATCAA
1 AATATTAA
*
104921279 AATATTAG
1 AATATTAA
104921287 AATA
1 AATA
104921291 ATAATAATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
7 7 0.15
8 32 0.70
9 7 0.15
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
AATATTAA
Found at i:104921559 original size:25 final size:25
Alignment explanation
Indices: 104921433--104921656 Score: 92
Period size: 25 Copynumber: 9.0 Consensus size: 25
104921423 AAAATACGTG
* *
104921433 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * * *
104921458 CTAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
104921483 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * *
104921505 ATAACATGTAAAAAAAATATATATAAATAAT
1 ATAATAT-T-----AAAGATATATACATAAT
*
104921536 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * * *
104921561 ATAGTATAAAATATATATATACGTAAT
1 ATAATAT-TAA-AGATATATACATAAT
* *
104921588 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
* *
104921611 AT-AT-TAAAAGA-ATATATATAAT
1 ATAATATTAAAGATATATACATAAT
*
104921633 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
104921656 A
1 A
104921657 ACAAAAAAGG
Statistics
Matches: 150, Mismatches: 32, Indels: 36
0.69 0.15 0.17
Matches are distributed among these distances:
21 4 0.03
22 27 0.18
23 28 0.19
24 8 0.05
25 43 0.29
26 3 0.02
27 17 0.11
30 1 0.01
31 19 0.13
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:104921578 original size:27 final size:27
Alignment explanation
Indices: 104921474--104921591 Score: 91
Period size: 27 Copynumber: 4.5 Consensus size: 27
104921464 TTAAAAATAC
* *
104921474 ATACATAATATAGT-TAAGATATATAC
1 ATACATAATATAGTATAAAATATATAT
* * * *
104921500 ATAAGATAACAT-GTAAAAAAAATATAT
1 AT-ACATAATATAGTATAAAATATATAT
* * * *
104921527 ATAAATAATATAATAT-TAA-AGATAT
1 ATACATAATATAGTATAAAATATATAT
*
104921552 ATACATAAAATAGTATAAAATATATAT
1 ATACATAATATAGTATAAAATATATAT
*
104921579 ATACGTAATATAG
1 ATACATAATATAG
104921592 AATTTAAAAT
Statistics
Matches: 68, Mismatches: 19, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
25 18 0.26
26 15 0.22
27 35 0.51
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.32
Consensus pattern (27 bp):
ATACATAATATAGTATAAAATATATAT
Found at i:104921603 original size:27 final size:27
Alignment explanation
Indices: 104921518--104921604 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
104921508 ACATGTAAAA
*
104921518 AAAATATATATAAATAATAT--AATATT
1 AAAATATATATACATAATATAGAAT-TT
* * * *
104921544 -AAAGATATATACATAAAATAGTA-TA
1 AAAATATATATACATAATATAGAATTT
*
104921569 AAATATATATATACGTAATATAGAATTT
1 AAA-ATATATATACATAATATAGAATTT
104921597 AAAATATA
1 AAAATATA
104921605 CCTAATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
25 17 0.37
26 2 0.04
27 23 0.50
28 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAATATATATACATAATATAGAATTT
Found at i:104922173 original size:30 final size:30
Alignment explanation
Indices: 104922137--104922251 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
104922127 TAGGTACAAG
* *
104922137 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
104922167 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
104922197 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
104922227 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
104922252 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 79 1.00
ACGTcount: A:0.22, C:0.03, G:0.50, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:104929550 original size:21 final size:20
Alignment explanation
Indices: 104929511--104929569 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 20
104929501 GTAAATAGTA
104929511 TATATATTAT-TTATATATTAT
1 TATATATT-TGTT-TATATTAT
104929532 CTATCATA-TTGTTTATATTAT
1 -TAT-ATATTTGTTTATATTAT
104929553 TATATATTTTGTTTATA
1 TATATA-TTTGTTTATA
104929570 AATTTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.55
22 6 0.18
23 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TATATATTTGTTTATATTAT
Found at i:104941778 original size:44 final size:44
Alignment explanation
Indices: 104941716--104942664 Score: 412
Period size: 44 Copynumber: 21.8 Consensus size: 44
104941706 TTAGACGGGA
* * *
104941716 AGCAGATAGAAGAAAGAAGATTTGGCGTCTCTGTATTGACAGAG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * * * * * *
104941760 AGCAGATCGAAGACAGAAGATCTGACAT-TCGTGTGTTTACATCAA
1 AGCAGATCGAAGATAGAAGATTTGGCATCTC-TGTATTGACA-GAG
***
104941805 AGCAGATC------A-AAGATTTGATGTCTCTGTATTGACAGAG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * * * * * * * **
104941842 AACAGATCAAAGATAGAAGATCTGACATTTGTGTGTTTACATCG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
**
104941886 A--A-A-C--AGATCA-AAGATTTGGTGTCTCTGTATTGACAGAG
1 AGCAGATCGAAGAT-AGAAGATTTGGCATCTCTGTATTGACAGAG
* * ** * **
104941924 AACAGATCAAAGATAGAAGATTTAACATTCATTTGT-TT-ACATCG
1 AGCAGATCGAAGATAGAAGATTTGGCA-TC-TCTGTATTGACAGAG
* * * *
104941968 -G-AG--C--AGATTGAAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATT-GACAGAG
* ** * * *
104942007 AGCAAATCGAAGATAGCTGATTTGGCGTCTCTGTATTGGCGGAG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * * * *
104942051 AGTAGATC-AGAGAAAGCACATCTGGCATCTCTGTATTGACAGAG
1 AGCAGATCGA-AGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * ** * *
104942095 AGCAGACCAAAGATAGCTGATTTGGCGTCTTTGTATTGAC-GAAG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAG-AG
* * * *
104942139 AACAGATC-AGAGA-AAACACATCTGGCATCTCTGTATTGACAGAG
1 AGCAGATCGA-AGATAGA-AGATTTGGCATCTCTGTATTGACAGAG
* * * *
104942183 AGAAAATCGAAGATA-ACTGATTTGGCATCTCTGTATTGACAGGG
1 AGCAGATCGAAGATAGA-AGATTTGGCATCTCTGTATTGACAGAG
* * * *
104942227 AGCAGATCAAAGAT-GACAGATTTGGTATCTTTGTATTTGATAGAG
1 AGCAGATCGAAGATAGA-AGATTTGGCATCTCTGTA-TTGACAGAG
** *
104942272 AGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGACAGGG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * * *
104942316 AGCAGATCGAAGAT-GACAAATTTGGCATCTCTGTGTTAGACGGGG
1 AGCAGATCGAAGATAGA-AGATTTGGCATCTCTGTATT-GACAGAG
* * * * * *
104942361 AGCAGGTCGAAGATAG-TGTATCTGACAT-TCGTGTGTTCACATCGA-
1 AGCAGATCGAAGATAGAAG-ATTTGGCATCTC-TGTATTGACA--GAG
** * *
104942406 AGCAGATCGAAGATAGCTGATTTGGCATCTTTGTATTGACAGGG
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
104942450 AGCAGATCGAAGAT-GACAGATTTGGCATCTCTGTATTAGAC-GAGG
1 AGCAGATCGAAGATAGA-AGATTTGGCATCTCTGTATT-GACAGA-G
* * * * * *
104942495 AGCAGGTCAAAGATAG-TGTATCTGACAT-TC-GTATGTTCACATTGA-
1 AGCAGATCGAAGATAGAAG-ATTTGGCATCTCTGTA--TTGACA--GAG
* * * *
104942540 AGCAGATCGAAGAT-GACAGATTTGGCGTTTCTATATTGACGGAG
1 AGCAGATCGAAGATAGA-AGATTTGGCATCTCTGTATTGACAGAG
* * * * * * * * *
104942584 AGCAGATCGAAGAAAGTACATCTAGCATTTTTGTATTGACAAAA
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
* * ** *
104942628 AACAGATTGAAGATAGCTGATTTGGCGTCTCTGTATT
1 AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATT
104942665 AGGCGGGGTG
Statistics
Matches: 672, Mismatches: 167, Indels: 132
0.69 0.17 0.14
Matches are distributed among these distances:
36 4 0.01
37 12 0.02
38 53 0.08
39 7 0.01
40 4 0.01
41 3 0.00
42 4 0.01
43 17 0.03
44 364 0.54
45 186 0.28
46 14 0.02
47 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (44 bp):
AGCAGATCGAAGATAGAAGATTTGGCATCTCTGTATTGACAGAG
Found at i:104941848 original size:37 final size:37
Alignment explanation
Indices: 104941807--104941937 Score: 113
Period size: 37 Copynumber: 3.3 Consensus size: 37
104941797 TACATCAAAG
104941807 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
1 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
* * * *
104941844 CAGATCAAAGA-TAGAAGATCTGACATTTGTGTGTTTACATCGA-AA
1 CAGATCAAAGATTTGATG-TCT--C-----TGTATTGACA--GAGAA
*
104941889 CAGATCAAAGATTTGGTGTCTCTGTATTGACAGAGAA
1 CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
104941926 CAGATCAAAGAT
1 CAGATCAAAGAT
104941938 AGAAGATTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
36 6 0.08
37 28 0.38
38 8 0.11
39 1 0.01
43 1 0.01
44 8 0.11
45 16 0.22
46 5 0.07
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (37 bp):
CAGATCAAAGATTTGATGTCTCTGTATTGACAGAGAA
Found at i:104941869 original size:82 final size:82
Alignment explanation
Indices: 104941732--104941998 Score: 383
Period size: 82 Copynumber: 3.3 Consensus size: 82
104941722 TAGAAGAAAG
* * *
104941732 AAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGACAGAAGATCTGACATTCGTGTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
104941797 TACATCAAAGCAGATCA
66 TACATCAAAGCAGATCA
** *
104941814 AAGATTTGATGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTTGTGTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
104941879 TACATCGAAA-CAGATCA
66 TACATC-AAAGCAGATCA
* * * * *
104941896 AAGATTTGGTGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATTTAACATTCATTTGTT
1 AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
** **
104941961 TACATCGGAGCAGATTG
66 TACATCAAAGCAGATCA
104941978 AAGATTTGGCGTCTCTGTATT
1 AAGATTTGGCGTCTCTGTATT
104941999 AGACGGGGAG
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
81 1 0.01
82 162 0.98
83 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (82 bp):
AAGATTTGGCGTCTCTGTATTGACAGAGAACAGATCAAAGATAGAAGATCTGACATTCGTGTGTT
TACATCAAAGCAGATCA
Found at i:104942296 original size:89 final size:87
Alignment explanation
Indices: 104941981--104942664 Score: 486
Period size: 89 Copynumber: 7.7 Consensus size: 87
104941971 CAGATTGAAG
* * * * * *
104941981 ATTTGGCGTCTCTGTATTAGACGGGGAGCAAATCGAAGATAGCTGATTTGGCGTCTCTGTATTGG
1 ATTTGGCATCTCTGTATT-GACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGA
* *
104942046 CGGAGAGTAGATCAGAGA-AAGCAC
65 CGG-GAGCAGATCAAAGATAA-CAC
* * * * *
104942070 ATCTGGCATCTCTGTATTGACAGAGAGCAGACCAAAGATAGCTGATTTGGCGTCTTTGTATTGAC
1 ATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGAC
* * * *
104942135 GAAGAACAGATCAGAGAAAACAC
66 G-GGAGCAGATCAAAGATAACAC
* * * *
104942158 ATCTGGCATCTCTGTATTGACAGAGAGAAAATCGAAGATAACTGATTTGGCATCTCTGTATTGAC
1 ATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGAC
* *
104942223 AGGGAGCAGATCAAAGATGACAG
66 -GGGAGCAGATCAAAGATAACAC
* * *
104942246 ATTTGGTATCTTTGTATTTGATAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGA
1 ATTTGGCATCTCTGTA-TTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGA
* * *
104942311 CAGGGAGCAGATCGAAGATGACAA
65 C-GGGAGCAGATCAAAGATAACAC
* * * * * * *
104942335 ATTTGGCATCTCTGTGTTAGACGGGGAGCAGGTCGAAGATAG-TGTATCTGACAT-TCGTGTGTT
1 ATTTGGCATCTCTGTATT-GACAGAGAGCAGATCGAAGATAGCTG-ATTTGGCATCTC-TGTATT
* * * * * **
104942398 CACATCGAAGCAGATCGAAGATAGCTG
63 GAC--GGGAGCAGATCAAAGATAACAC
* * *
104942425 ATTTGGCATCTTTGTATTGACAGGGAGCAGATCGAAGAT-GACAGATTTGGCATCTCTGTATTAG
1 ATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CTGATTTGGCATCTCTGTATT-G
* ****
104942489 ACGAGGAGCAGGTCAAAGATAGTGT
64 ACG-GGAGCAGATCAAAGATAACAC
* * * * * * *
104942514 ATCTGACAT-TC-GTATGTTCACATTGA-AGCAGATCGAAGAT-GACAGATTTGGCGTTTCTATA
1 ATTTGGCATCTCTGTA--TTGACA--GAGAGCAGATCGAAGATAG-CTGATTTGGCATCTCTGTA
* *
104942575 TTGACGGAGAGCAGATCGAAGA-AAGTAC
61 TTGACGG-GAGCAGATCAAAGATAA-CAC
* * * * * * * * *
104942603 ATCTAGCATTTTTGTATTGACAAAAAACAGATTGAAGATAGCTGATTTGGCGTCTCTGTATT
1 ATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATT
104942665 AGGCGGGGTG
Statistics
Matches: 481, Mismatches: 91, Indels: 47
0.78 0.15 0.08
Matches are distributed among these distances:
87 4 0.01
88 182 0.38
89 219 0.46
90 72 0.15
91 4 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (87 bp):
ATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGAC
GGGAGCAGATCAAAGATAACAC
Found at i:104942441 original size:134 final size:134
Alignment explanation
Indices: 104942272--104942596 Score: 512
Period size: 134 Copynumber: 2.4 Consensus size: 134
104942262 TTTGATAGAG
*
104942272 AGCAGATCGAAGATAGCTGATTTGGCATCTCTGTATTGACAGGGAGCAGATCGAAGATGACAAAT
1 AGCAGATCGAAGATAGCTGATTTGGCATCTTTGTATTGACAGGGAGCAGATCGAAGATGACAAAT
* * * *
104942337 TTGGCATCTCTGTGTTAGACGGGGAGCAGGTCGAAGATAGTGTATCTGACATTCGTGTGTTCACA
66 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCAAAGATAGTGTATCTGACATTCGTATGTTCACA
104942402 TCGA
131 TCGA
*
104942406 AGCAGATCGAAGATAGCTGATTTGGCATCTTTGTATTGACAGGGAGCAGATCGAAGATGACAGAT
1 AGCAGATCGAAGATAGCTGATTTGGCATCTTTGTATTGACAGGGAGCAGATCGAAGATGACAAAT
104942471 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCAAAGATAGTGTATCTGACATTCGTATGTTCACA
66 TTGGCATCTCTGTATTAGACGAGGAGCAGGTCAAAGATAGTGTATCTGACATTCGTATGTTCACA
*
104942536 TTGA
131 TCGA
* * *
104942540 AGCAGATCGAAGAT-GACAGATTTGGCGT-TTCTATATTGAC-GGAGAGCAGATCGAAGA
1 AGCAGATCGAAGATAG-CTGATTTGGCATCTT-TGTATTGACAGG-GAGCAGATCGAAGA
104942597 AAGTACATCT
Statistics
Matches: 178, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
133 5 0.03
134 173 0.97
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (134 bp):
AGCAGATCGAAGATAGCTGATTTGGCATCTTTGTATTGACAGGGAGCAGATCGAAGATGACAAAT
TTGGCATCTCTGTATTAGACGAGGAGCAGGTCAAAGATAGTGTATCTGACATTCGTATGTTCACA
TCGA
Found at i:104944254 original size:21 final size:20
Alignment explanation
Indices: 104944215--104944273 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 20
104944205 GTAAATAGTA
104944215 TATATATTAT-TTATATATTAT
1 TATATATT-TGTT-TATATTAT
104944236 CTATCATA-TTGTTTATATTAT
1 -TAT-ATATTTGTTTATATTAT
104944257 TATATATTTTGTTTATA
1 TATATA-TTTGTTTATA
104944274 AATTTTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
19 3 0.09
20 3 0.09
21 18 0.55
22 6 0.18
23 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (20 bp):
TATATATTTGTTTATATTAT
Found at i:104944644 original size:4 final size:4
Alignment explanation
Indices: 104944630--104944668 Score: 55
Period size: 4 Copynumber: 10.2 Consensus size: 4
104944620 TATGTTTATA
*
104944630 ATTT GTTT ATTT ATTT ATTT ATTT ATTT -TTT ATTT -TTT A
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A
104944669 ATATTGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 6 0.19
4 25 0.81
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:104953045 original size:118 final size:118
Alignment explanation
Indices: 104952837--104953072 Score: 364
Period size: 118 Copynumber: 2.0 Consensus size: 118
104952827 AGTTTTCCAT
* * * *
104952837 GGTTATGAGTATAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGAGTTGTCATT
* *
104952902 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
*
104952955 GGTTATGAGTATGGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGAGTTGTCATT
1 GGTTATGAGTATAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGAGTTGTCATT
* ****
104953020 CTACTTCATGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTAACCGA
66 CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
104953073 AAATAAATAA
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 106 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTATAGCTCAAATCATGACTGACTGAGTAACCGGGGTAGGGTGCTTGAGTTGTCATT
CTACTTCACGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAACCGA
Found at i:104953199 original size:1 final size:1
Alignment explanation
Indices: 104953193--104953240 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
104953183 AATAAAATTT
* * * * *
104953193 AAAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAGAAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
104953241 TAAGTAATAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:104953207 original size:10 final size:10
Alignment explanation
Indices: 104953194--104953240 Score: 78
Period size: 10 Copynumber: 4.7 Consensus size: 10
104953184 ATAAAATTTA
104953194 AAAAAAAAAG
1 AAAAAAAAAG
104953204 -AAAAAAAAG
1 AAAAAAAAAG
104953213 AAAAAAAAAG
1 AAAAAAAAAG
104953223 AAGAAAAAAAG
1 AA-AAAAAAAG
104953234 AAAAAAA
1 AAAAAAA
104953241 TAAGTAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.26
10 16 0.46
11 10 0.29
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:104953233 original size:21 final size:21
Alignment explanation
Indices: 104953193--104953240 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
104953183 AATAAAATTT
104953193 AAAAAAAAAAGAAAAAAAAGA
1 AAAAAAAAAAGAAAAAAAAGA
104953214 AAAAAAAAGAAG-AAAAAAAGA
1 AAAAAAAA-AAGAAAAAAAAGA
104953235 AAAAAA
1 AAAAAA
104953241 TAAGTAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAGAAAAAAAAGA
Found at i:104961863 original size:21 final size:21
Alignment explanation
Indices: 104961838--104961878 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
104961828 CTAGTTTGTC
104961838 AAGTCAATTGGTAGTTAGCTG
1 AAGTCAATTGGTAGTTAGCTG
* *
104961859 AAGTCAGTTGGTTGTTAGCT
1 AAGTCAATTGGTAGTTAGCT
104961879 AGGTAGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (21 bp):
AAGTCAATTGGTAGTTAGCTG
Found at i:104966019 original size:20 final size:23
Alignment explanation
Indices: 104965994--104966037 Score: 67
Period size: 20 Copynumber: 2.0 Consensus size: 23
104965984 TTTTAGTTAT
104965994 TAAATAC-A-AAAACA-ATGTAA
1 TAAATACTATAAAACACATGTAA
104966014 TAAATACTATAAAACACATGTAA
1 TAAATACTATAAAACACATGTAA
104966037 T
1 T
104966038 GTAGGAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 1 0.05
22 6 0.29
23 7 0.33
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (23 bp):
TAAATACTATAAAACACATGTAA
Found at i:104967566 original size:24 final size:24
Alignment explanation
Indices: 104967533--104967578 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
104967523 TAATTAGAAT
*
104967533 TAAATATAAAAAATATTTAAAACA
1 TAAATATAAAAAAAATTTAAAACA
*
104967557 TAAATGTAAAAAAAATTTAAAA
1 TAAATATAAAAAAAATTTAAAA
104967579 TAGCATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (24 bp):
TAAATATAAAAAAAATTTAAAACA
Found at i:104970136 original size:17 final size:17
Alignment explanation
Indices: 104970114--104970148 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
104970104 TACAAAAATT
*
104970114 AAAAAATGAAATTAAAC
1 AAAAAATAAAATTAAAC
104970131 AAAAAATAAAATTAAAC
1 AAAAAATAAAATTAAAC
104970148 A
1 A
104970149 GTCCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAAAATAAAATTAAAC
Found at i:104970755 original size:15 final size:15
Alignment explanation
Indices: 104970735--104970799 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
104970725 AAGAAGGTGA
104970735 TATTTTGTTTATTGT
1 TATTTTGTTTATTGT
*
104970750 TATTTTTCGTTT-CTGT
1 TA-TTTT-GTTTATTGT
** *
104970766 T-TTTT-TCAATTGA
1 TATTTTGTTTATTGT
104970779 TATTTTGTTTATTGT
1 TATTTTGTTTATTGT
104970794 TATTTT
1 TATTTT
104970800 TTGTTTCTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
12 1 0.03
13 3 0.08
14 8 0.22
15 13 0.35
16 8 0.22
17 4 0.11
ACGTcount: A:0.14, C:0.05, G:0.11, T:0.71
Consensus pattern (15 bp):
TATTTTGTTTATTGT
Found at i:104970784 original size:44 final size:45
Alignment explanation
Indices: 104970732--104970820 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 45
104970722 TTTAAGAAGG
104970732 TGATATTTTGTTTATTGTTATTTTTCGTTTCT-GTTTTTTTCAAT
1 TGATATTTTGTTTATTGTTATTTTTCGTTTCTAGTTTTTTTCAAT
* *
104970776 TGATATTTTGTTTATTGTTATTTTTTGTTTCTATTTTTTTTCAAT
1 TGATATTTTGTTTATTGTTATTTTTCGTTTCTAGTTTTTTTCAAT
104970821 ACATACAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 31 0.74
45 11 0.26
ACGTcount: A:0.15, C:0.06, G:0.10, T:0.70
Consensus pattern (45 bp):
TGATATTTTGTTTATTGTTATTTTTCGTTTCTAGTTTTTTTCAAT
Found at i:104971463 original size:44 final size:45
Alignment explanation
Indices: 104971415--104971500 Score: 104
Period size: 44 Copynumber: 1.9 Consensus size: 45
104971405 TTAACCCTAC
*
104971415 AGTTTTATTAATCATTAATTTTAA-TCATTTTTTATA-TATTTCTA
1 AGTTTTATTAATCATTAATTTTAAGT-ATTTTATATATTATTTCTA
* * * *
104971459 AGTTTTTTTATTTATTTATTTTAAGTATTTTATATATTATTT
1 AGTTTTATTAATCATTAATTTTAAGTATTTTATATATTATTT
104971501 ATTTTACTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
44 29 0.83
45 6 0.17
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (45 bp):
AGTTTTATTAATCATTAATTTTAAGTATTTTATATATTATTTCTA
Found at i:104971619 original size:29 final size:30
Alignment explanation
Indices: 104971533--104971649 Score: 105
Period size: 33 Copynumber: 3.7 Consensus size: 30
104971523 TATATAAAAA
*
104971533 ATTATTTATCGTATATTATTT-TATTATATAT
1 ATTATTTAT--TATGTTATTTATATTATATAT
*
104971564 -TTATATTATTATGTTATGTTGTCTATTATATAT
1 ATTAT-TTATTATGTTA--TT-TATATTATATAT
104971597 ATTATTTATTAT-TTATTTATATTCTATCATAT
1 ATTATTTATTATGTTATTTATA-T-TAT-ATAT
*
104971629 ATTATTTATTATGTTGTTTAT
1 ATTATTTATTATGTTATTTAT
104971650 CTTTATCTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 18
0.78 0.03 0.19
Matches are distributed among these distances:
29 9 0.12
30 7 0.10
31 9 0.12
32 20 0.27
33 24 0.33
34 4 0.05
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTATTTATTATGTTATTTATATTATATAT
Found at i:104971634 original size:32 final size:32
Alignment explanation
Indices: 104971548--104971665 Score: 109
Period size: 32 Copynumber: 3.7 Consensus size: 32
104971538 TTATCGTATA
*
104971548 TTAT-TTTATTATATATTTATATTATTATGTTAT
1 TTATATTTATCATATA-TTAT-TTATTATGTTAT
* *
104971581 GTTGTCTATTAT-ATATATTATTTATTAT-TTAT
1 -TTATAT-TTATCATATATTATTTATTATGTTAT
*
104971613 TTATATTCTATCATATATTATTTATTATGTTGT
1 TTATATT-TATCATATATTATTTATTATGTTAT
* *
104971646 TTATCTTTATC-TTTATTATT
1 TTATATTTATCATATATTATT
104971666 ATAATTTTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
30 1 0.01
31 15 0.21
32 24 0.33
33 16 0.22
34 7 0.10
35 6 0.08
36 4 0.05
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (32 bp):
TTATATTTATCATATATTATTTATTATGTTAT
Found at i:104972901 original size:16 final size:15
Alignment explanation
Indices: 104972872--104972914 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
104972862 TTACATCCAT
104972872 CTTTTCTATTTCTTCC
1 CTTTTCT-TTTCTTCC
*
104972888 CTCTTTCTTTTCTTTC
1 CT-TTTCTTTTCTTCC
104972904 CTTTTCTTTTC
1 CTTTTCTTTTC
104972915 ATTGAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 9 0.36
16 11 0.44
17 5 0.20
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTTCTTTTCTTCC
Found at i:104975603 original size:43 final size:43
Alignment explanation
Indices: 104975495--104975595 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
104975485 ACCGAGATGT
* * * *
104975495 GATTACATGTAAGACAATGTCTAAGACATTGGCATTGTATTGT
1 GATTACGTGTAAGACAATGTCTGAGACATTGGCATCGTATTGC
*
104975538 GATTACGTGTAAGACTATGTCTGAGACATTGGCATCGTTATT-C
1 GATTACGTGTAAGACAATGTCTGAGACATTGGCATCG-TATTGC
*
104975581 GATTTCGTGTAAGAC
1 GATTACGTGTAAGAC
104975596 CCTGTCTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 47 0.92
44 4 0.08
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
GATTACGTGTAAGACAATGTCTGAGACATTGGCATCGTATTGC
Found at i:104978837 original size:72 final size:72
Alignment explanation
Indices: 104978753--104978895 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 72
104978743 CCTATTGTTG
*
104978753 GTGGCAGTCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCTT
1 GTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCTT
104978818 CTAGAAT
66 CTAGAAT
* * *
104978825 GTGGCAGCCTGTGGTAAGGGGTACACGGCTGAGCGAATAACTTGGGAGTATTTTCAATAGGCCTT
1 GTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCTT
104978890 CTAGAA
66 CTAGAA
104978896 GAAGTATGTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (72 bp):
GTGGCAGCCTGTGGTAAGGGGTACACGACTGAGCGAATAACTTGAGAGTATTTTCAAGAGGCCTT
CTAGAAT
Found at i:104983291 original size:16 final size:15
Alignment explanation
Indices: 104983265--104983304 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
104983255 CTTCCATGTG
104983265 TTCTATTTCTTCCCTCT
1 TTCT-TTTCTTCCCT-T
*
104983282 TTCTTTTCTTTCCTT
1 TTCTTTTCTTCCCTT
104983297 TTCTTTTC
1 TTCTTTTC
104983305 ATCGAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.68
Consensus pattern (15 bp):
TTCTTTTCTTCCCTT
Found at i:104986639 original size:17 final size:17
Alignment explanation
Indices: 104986619--104986651 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
104986609 TTGTATTTTT
*
104986619 TTGTTTATATTATTAAG
1 TTGTTAATATTATTAAG
104986636 TTGTTAATATTATTAA
1 TTGTTAATATTATTAA
104986652 TTATTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (17 bp):
TTGTTAATATTATTAAG
Found at i:104988014 original size:17 final size:17
Alignment explanation
Indices: 104987988--104988023 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
104987978 ACGTTTTCAT
*
104987988 ATTCTGTCCTAAAAATG
1 ATTCTCTCCTAAAAATG
104988005 ATTCTCTCCTAAAAATG
1 ATTCTCTCCTAAAAATG
104988022 AT
1 AT
104988024 CTAAAACCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (17 bp):
ATTCTCTCCTAAAAATG
Found at i:104990452 original size:17 final size:17
Alignment explanation
Indices: 104990422--104990454 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
104990412 AAAAGTAATG
104990422 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
104990439 ATATGCTAAA-AAAATA
1 ATATG-TAAATAAAATA
104990455 TACAGTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:104990553 original size:3 final size:3
Alignment explanation
Indices: 104990547--104990770 Score: 72
Period size: 3 Copynumber: 75.3 Consensus size: 3
104990537 AAAATACAAC
* * * *
104990547 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
104990590 AAT AGT AAC AAT -AT GAC GAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
104990634 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
104990679 AAT -CT ATT AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT
1 AAT AAT AAT AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
104990723 AGAT AAT AAT AGT AA- AAT AAT AAGT AAC AAT AAT AAAT TAT AAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT
104990770 A
1 A
104990771 GTGATGAGAA
Statistics
Matches: 160, Mismatches: 43, Indels: 36
0.67 0.18 0.15
Matches are distributed among these distances:
2 18 0.11
3 125 0.78
4 17 0.11
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:104990553 original size:22 final size:22
Alignment explanation
Indices: 104990502--104990562 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
104990492 ATAAGTAAAT
* *
104990502 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
104990523 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
104990545 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
104990563 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:104990789 original size:16 final size:16
Alignment explanation
Indices: 104990770--104990801 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
104990760 TTATAATAAT
104990770 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
104990786 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
104990802 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:104990935 original size:16 final size:16
Alignment explanation
Indices: 104990906--104990943 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
104990896 TATACGTATG
*
104990906 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
104990921 AAAATATAATAATAGT
1 AAAATATAATAATAGT
104990937 AATAATA
1 AA-AATA
104990944 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:104991942 original size:12 final size:12
Alignment explanation
Indices: 104991925--104991949 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
104991915 TTGGGTTAGT
104991925 GTTTTGGGCTAA
1 GTTTTGGGCTAA
104991937 GTTTTGGGCTAA
1 GTTTTGGGCTAA
104991949 G
1 G
104991950 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:104993551 original size:17 final size:19
Alignment explanation
Indices: 104993525--104993566 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
104993515 TCATATTAAA
*
104993525 TAATAGAAAAAAAT-A-TT
1 TAATATAAAAAAATAACTT
*
104993542 TAATATAAAAAGATAACTT
1 TAATATAAAAAAATAACTT
104993561 TAATAT
1 TAATAT
104993567 GTTTGAGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 12 0.57
18 1 0.05
19 8 0.38
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (19 bp):
TAATATAAAAAAATAACTT
Found at i:105018022 original size:21 final size:21
Alignment explanation
Indices: 105017993--105018044 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
105017983 CCTTAATTTG
* *
105017993 TTTTTTTTATGTT-TATACTA
1 TTTTATTTATGTTGTAGACTA
*
105018013 TTTTCATTTAT-TTGTAGAGTA
1 TTTT-ATTTATGTTGTAGACTA
105018034 TTTTATTTATG
1 TTTTATTTATG
105018045 AATATTGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (21 bp):
TTTTATTTATGTTGTAGACTA
Found at i:105021056 original size:127 final size:127
Alignment explanation
Indices: 105020886--105021202 Score: 440
Period size: 127 Copynumber: 2.5 Consensus size: 127
105020876 TATTTAGCCC
* * * *
105020886 AACGAAAAACCGAAACCCAGCACGGTA-GGCACGATTCCTCGAATTTCTAAACATTGAACATTGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
* * *
105020950 CTTGCTTTAGAATTTAGAAAACACAAGTGAAATTCTAAAGGAATATTCTATTATTTTGAACAA
66 ATTGCTTTAGAATTTAGAAAACACAAGTGAAATTCTAAAGGAATATTCGATCATTTTGAA-AA
* * * *
105021013 ACCG-GAAATCGAAACCCAACACGATAGGGCACGATTCCCCGAATTTCCAAACATTGAATATTGC
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
* * * *
105021077 ATTGTTTTAGAATTTGGAAAACACGAGTGAAATTCTAAAGGAATGTTCGATCATTTTGAAAA
66 ATTGCTTTAGAATTTAGAAAACACAAGTGAAATTCTAAAGGAATATTCGATCATTTTGAAAA
* * **
105021139 AACGAGAAATCGAAACCCAGCACGATAGGGCACGGTTTCTCGAATTTCCAAACATCAAACATTG
1 AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTG
105021203 GCTTCGTTTT
Statistics
Matches: 165, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
126 23 0.14
127 142 0.86
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (127 bp):
AACGAGAAATCGAAACCCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACATTGAACATTGC
ATTGCTTTAGAATTTAGAAAACACAAGTGAAATTCTAAAGGAATATTCGATCATTTTGAAAA
Found at i:105023220 original size:17 final size:16
Alignment explanation
Indices: 105023189--105023236 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
105023179 CATAATTTAC
105023189 AAATAAAAATATATAA
1 AAATAAAAATATATAA
*
105023205 AAATATAAAT-TATATA
1 AAATAAAAATATATA-A
*
105023221 ATATAAAAATATATAA
1 AAATAAAAATATATAA
105023237 TATAAAGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 4 0.15
16 19 0.70
17 4 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAAAATATATAA
Found at i:105023223 original size:24 final size:22
Alignment explanation
Indices: 105023189--105023305 Score: 80
Period size: 22 Copynumber: 5.0 Consensus size: 22
105023179 CATAATTTAC
*
105023189 AAATAAAAATATATAAAAATAT
1 AAATATAAATATATAAAAATAT
*
105023211 AAAT-TATATAATATAAAAATAT
1 AAATATAAAT-ATATAAAAATAT
105023233 ATAATATAAAGTATATAATATAATAT
1 A-AATATAAA-TATATAA-A-AATAT
*
105023259 AAA-A-AAATATTATAATATATAGT
1 AAATATAAATA-TATAA-AAATA-T
*
105023282 AAA-ATATAATATGTAATAAATAT
1 AAATATA-AATATATAA-AAATAT
105023305 A
1 A
105023306 TATGAATAGA
Statistics
Matches: 79, Mismatches: 6, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.04
22 22 0.28
23 20 0.25
24 20 0.25
25 8 0.10
26 6 0.08
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (22 bp):
AAATATAAATATATAAAAATAT
Found at i:105023225 original size:14 final size:14
Alignment explanation
Indices: 105023206--105023255 Score: 73
Period size: 14 Copynumber: 3.5 Consensus size: 14
105023196 AATATATAAA
*
105023206 AATATAAATTATAT
1 AATATAAAATATAT
105023220 AATATAAAAATATAT
1 AATAT-AAAATATAT
*
105023235 AATATAAAGTATAT
1 AATATAAAATATAT
105023249 AATATAA
1 AATATAA
105023256 TATAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 20 0.61
15 13 0.39
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (14 bp):
AATATAAAATATAT
Found at i:105023226 original size:5 final size:5
Alignment explanation
Indices: 105023206--105023334 Score: 69
Period size: 5 Copynumber: 26.0 Consensus size: 5
105023196 AATATATAAA
* *
105023206 AATAT AA-AT TATAT AATAT AA-AA ATATAT AATAT AA-AGT -ATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATA-T AATAT AATAT
* * *
105023254 AATAT AA-A- AAAAT ATTAT AATAT ATAGTAA AATAT AATATGT AATA-
1 AATAT AATAT AATAT AATAT AATAT A-A-TAT AATAT AATA--T AATAT
*
105023300 AATAT -ATAT GAATAG AATAT AATGA- AATAT AATAT
1 AATAT AATAT -AATAT AATAT AAT-AT AATAT AATAT
105023335 GATAAGGGAT
Statistics
Matches: 96, Mismatches: 11, Indels: 34
0.68 0.08 0.24
Matches are distributed among these distances:
3 2 0.02
4 19 0.20
5 59 0.61
6 8 0.08
7 8 0.08
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (5 bp):
AATAT
Found at i:105023239 original size:29 final size:30
Alignment explanation
Indices: 105023191--105023255 Score: 96
Period size: 29 Copynumber: 2.1 Consensus size: 30
105023181 TAATTTACAA
*
105023191 ATAAAAATATATAAAAATATAAATTATATAAT
1 ATAAAAATATAT--AAATATAAAGTATATAAT
105023223 ATAAAAATATAT-AATATAAAGTATATAAT
1 ATAAAAATATATAAATATAAAGTATATAAT
105023252 ATAA
1 ATAA
105023256 TATAAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 20 0.62
32 12 0.38
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (30 bp):
ATAAAAATATATAAATATAAAGTATATAAT
Found at i:105023288 original size:10 final size:9
Alignment explanation
Indices: 105023194--105023289 Score: 53
Period size: 10 Copynumber: 10.9 Consensus size: 9
105023184 TTTACAAATA
105023194 AAAATATAT
1 AAAATATAT
105023203 AAAA-ATAT
1 AAAATATAT
105023211 -AAAT-TAT
1 AAAATATAT
*
105023218 ATAATATA-
1 AAAATATAT
105023226 AAAATATAT
1 AAAATATAT
105023235 --AATATA-
1 AAAATATAT
*
105023241 AAGTATATAAT
1 AA-AATAT-AT
* *
105023252 ATAATATAAA
1 AAAATAT-AT
105023262 AAAATATTAT
1 AAAATA-TAT
*
105023272 AATATATAGT
1 AAAATATA-T
105023282 AAAATATA
1 AAAATATA
105023290 ATATGTAATA
Statistics
Matches: 66, Mismatches: 10, Indels: 21
0.68 0.10 0.22
Matches are distributed among these distances:
7 12 0.18
8 14 0.21
9 12 0.18
10 26 0.39
11 2 0.03
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAATATAT
Found at i:105023410 original size:34 final size:33
Alignment explanation
Indices: 105023362--105023427 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
105023352 ATAATAGTAA
*
105023362 TAACATAATAAGTATTCTACATATAAAA-ATATAG
1 TAACATAATAAGTA-TATA-ATATAAAACATATAG
105023396 TAACATAA-ATAGTATATAATATAAAACATATA
1 TAACATAATA-AGTATATAATATAAAACATATA
105023428 AAAAACAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 8 0.28
33 9 0.31
34 12 0.41
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.32
Consensus pattern (33 bp):
TAACATAATAAGTATATAATATAAAACATATAG
Found at i:105023458 original size:12 final size:13
Alignment explanation
Indices: 105023437--105023465 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
105023427 AAAAAACAGG
105023437 ATAAATATATATA
1 ATAAATATATATA
105023450 ATAAA-ATATATA
1 ATAAATATATATA
105023462 ATAA
1 ATAA
105023466 TTTTTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATAAATATATATA
Found at i:105028132 original size:9 final size:8
Alignment explanation
Indices: 105028097--105028132 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
105028087 TTATTTAATT
105028097 TTAAAATA
1 TTAAAATA
105028105 TTAAAATA
1 TTAAAATA
*
105028113 ATAAAATA
1 TTAAAATA
105028121 TTAAGAATA
1 TTAA-AATA
105028130 TTA
1 TTA
105028133 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 18 0.72
9 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (8 bp):
TTAAAATA
Found at i:105028149 original size:68 final size:70
Alignment explanation
Indices: 105028048--105028180 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 70
105028038 ATATTTATGT
105028048 TATTAAAATATTTATTATAAAATATTTAAAATTA-TATTATTAT-TTAATTTTAAAATATTAAAA
1 TATTAAAATATTTATTATAAAATATTTAAAATTACTATTA--ATGTTAATTTT-AAATATTAAAA
105028111 TAATAAAA
63 TAATAAAA
* *
105028119 TATTAAGAATA-TTATT-T-AAA-ATTTAAAATTACTATTAATGTTAATTTTTATTATTAAAATA
1 TATTAA-AATATTTATTATAAAATATTTAAAATTACTATTAATGTTAATTTTAAATATTAAAATA
105028180 A
65 A
105028181 AATTATAATG
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
67 14 0.25
68 19 0.33
69 8 0.14
70 1 0.02
71 11 0.19
72 4 0.07
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (70 bp):
TATTAAAATATTTATTATAAAATATTTAAAATTACTATTAATGTTAATTTTAAATATTAAAATAA
TAAAA
Found at i:105032165 original size:13 final size:13
Alignment explanation
Indices: 105032149--105032192 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
105032139 CTTCAATATA
105032149 TTTTCATAATAATT
1 TTTTCATAATAA-T
*
105032163 TTTTTATAAT-AT
1 TTTTCATAATAAT
105032175 ATTTTCATAATAAT
1 -TTTTCATAATAAT
105032189 TTTT
1 TTTT
105032193 TTTAATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 1 0.04
13 14 0.54
14 11 0.42
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTTCATAATAAT
Found at i:105032171 original size:14 final size:14
Alignment explanation
Indices: 105032149--105032193 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
105032139 CTTCAATATA
105032149 TTTTCATAATAATT
1 TTTTCATAATAATT
* *
105032163 TTTTTATAAT-ATA
1 TTTTCATAATAATT
105032176 TTTTCATAATAATT
1 TTTTCATAATAATT
105032190 TTTT
1 TTTT
105032194 TTAATCTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTTCATAATAATT
Found at i:105032181 original size:27 final size:26
Alignment explanation
Indices: 105032143--105032198 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 26
105032133 ACCGATCTTC
105032143 AATATATTTTCATAATAATTTTTTTAT
1 AATATATTTTCATAATAATTTTTTT-T
105032170 AATATATTTTCATAATAATTTTTTTT
1 AATATATTTTCATAATAATTTTTTTT
105032196 AAT
1 AAT
105032199 CTTTATATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (26 bp):
AATATATTTTCATAATAATTTTTTTT
Found at i:105032756 original size:19 final size:19
Alignment explanation
Indices: 105032732--105032769 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
105032722 TATCGTCTAA
*
105032732 ATGTCTTCATGGCTTGCTT
1 ATGTCTTCATAGCTTGCTT
105032751 ATGTCTTCATAGCTTGCTT
1 ATGTCTTCATAGCTTGCTT
105032770 CAAGTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
ATGTCTTCATAGCTTGCTT
Found at i:105034039 original size:15 final size:16
Alignment explanation
Indices: 105034019--105034048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105034009 CTATTAAAAA
105034019 AAATTA-AATAAAGTC
1 AAATTAGAATAAAGTC
105034034 AAATTAGAATAAAGT
1 AAATTAGAATAAAGT
105034049 TAACATTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (16 bp):
AAATTAGAATAAAGTC
Found at i:105035774 original size:94 final size:96
Alignment explanation
Indices: 105035671--105035859 Score: 283
Period size: 96 Copynumber: 2.0 Consensus size: 96
105035661 ATTTTCAGTG
* *
105035671 ACTGAATTTGGACTATTTTAACGGCTAACAAAGAAA-G-AGAAAAAAAAGGTGTTGGAGAGGACG
1 ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
* *
105035734 GCTAGTCGAGAAAACAGAGTAGGGAGCAATA
66 GATAGTCGAGAAAACAGAGTAGGGAACAATA
* * * *
105035765 ACTGAATTTGGACTAATTTAAAGGGTAACAAAGAAAGGCGGAAAATAATGGTGTTGGAGAGGACG
1 ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
*
105035830 GATGGTCGAGAAAACAGAGTAGGGAACAAT
66 GATAGTCGAGAAAACAGAGTAGGGAACAAT
105035860 CTGAGTTGAG
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
94 33 0.39
95 1 0.01
96 50 0.60
ACGTcount: A:0.42, C:0.10, G:0.30, T:0.19
Consensus pattern (96 bp):
ACTGAATTTGGACTAATTTAAAGGCTAACAAAGAAAGGCAGAAAAAAAAGGTGTTGGAGAGGACG
GATAGTCGAGAAAACAGAGTAGGGAACAATA
Found at i:105038602 original size:17 final size:17
Alignment explanation
Indices: 105038580--105038613 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
105038570 ATCCACTAAT
*
105038580 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
105038597 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
105038614 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:105043241 original size:17 final size:17
Alignment explanation
Indices: 105043219--105043252 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
105043209 ATCCACTAAT
*
105043219 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
105043236 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
105043253 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:105044636 original size:86 final size:86
Alignment explanation
Indices: 105044509--105044671 Score: 326
Period size: 86 Copynumber: 1.9 Consensus size: 86
105044499 TAAATTCAAT
105044509 TGAATCGTATAAGGATATTAATTTACTTATGCTTGAATATGTATATTTTTGTATTTGTTGTCAAA
1 TGAATCGTATAAGGATATTAATTTACTTATGCTTGAATATGTATATTTTTGTATTTGTTGTCAAA
105044574 TTGTGTTTATTTGAGCAAGAG
66 TTGTGTTTATTTGAGCAAGAG
105044595 TGAATCGTATAAGGATATTAATTTACTTATGCTTGAATATGTATATTTTTGTATTTGTTGTCAAA
1 TGAATCGTATAAGGATATTAATTTACTTATGCTTGAATATGTATATTTTTGTATTTGTTGTCAAA
105044660 TTGTGTTTATTT
66 TTGTGTTTATTT
105044672 TCAGGTATGG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 77 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.49
Consensus pattern (86 bp):
TGAATCGTATAAGGATATTAATTTACTTATGCTTGAATATGTATATTTTTGTATTTGTTGTCAAA
TTGTGTTTATTTGAGCAAGAG
Found at i:105046304 original size:157 final size:157
Alignment explanation
Indices: 105046128--105046435 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
105046118 AAGAATATTG
* *
105046128 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATGTTTTTAATAATAATTATGTTAAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
* *
105046193 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
105046258 ATAATTTACCAAAACAAATTTCTGGTA
131 ATAATTTACCAAAACAAATTTCTGGTA
*
105046285 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
105046350 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
*
105046415 ATCATTTACCAAAACAAATTT
131 ATAATTTACCAAAACAAATTT
105046436 ATGCTAAGGG
Statistics
Matches: 145, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
ATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTCTGGTA
Found at i:105046323 original size:18 final size:17
Alignment explanation
Indices: 105046295--105046329 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
105046285 ATTATTAAGA
*
105046295 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
105046312 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
105046330 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:105046586 original size:16 final size:16
Alignment explanation
Indices: 105046565--105046616 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
105046555 GATTTGCTAT
105046565 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
105046581 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
105046597 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
105046613 TACA
1 TACA
105046617 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:105060206 original size:60 final size:61
Alignment explanation
Indices: 105060066--105060185 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
105060056 CATACCAATA
105060066 ACACAAAGATATACACTT-AAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
1 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
105060126 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
1 ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGA
105060186 TAGAAACATA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
60 18 0.31
61 41 0.69
ACGTcount: A:0.54, C:0.19, G:0.07, T:0.20
Consensus pattern (61 bp):
ACACAAAGATATACACTTAAAAAGAAATATCAAGATCTATAAAACACCTTAAACACATGAC
Done.