Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 325 of 356
Found at i:105062625 original size:12 final size:12
Alignment explanation
Indices: 105062608--105062638 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
105062598 CCTCGCACGC
105062608 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
105062620 CCGTGTGCTAGG
1 CCGTGTGCCAGG
105062632 CCGTGTG
1 CCGTGTG
105062639 AAAACTGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.29, G:0.42, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:105065910 original size:16 final size:18
Alignment explanation
Indices: 105065875--105065912 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
105065865 ATCCTTATTT
*
105065875 AAATAAAATACAGTAGTA
1 AAATAAAATACAGAAGTA
105065893 AAATAAAATA-A-AAGTA
1 AAATAAAATACAGAAGTA
105065909 AAAT
1 AAAT
105065913 CCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAGAAGTA
Found at i:105067137 original size:20 final size:20
Alignment explanation
Indices: 105067094--105067144 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
105067084 ATACATATTA
* *
105067094 TCACTGTTCATGATTTCACT
1 TCACTGTTCATGACTTCACC
* *
105067114 TCACTGTTCATGGCTTGACC
1 TCACTGTTCATGACTTCACC
*
105067134 TCACTATTCAT
1 TCACTGTTCAT
105067145 AGGAATGGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (20 bp):
TCACTGTTCATGACTTCACC
Found at i:105071706 original size:23 final size:23
Alignment explanation
Indices: 105071680--105071731 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
105071670 TGATTTTGAA
*
105071680 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
105071703 ATTTAGAATTATCTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
105071726 ATTTAG
1 ATTTAG
105071732 GAAAAATCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATCTAGTGATAAT
Found at i:105072592 original size:18 final size:18
Alignment explanation
Indices: 105072569--105072632 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
105072559 AGCTTAAAAA
*
105072569 TATTTTATTTATTCCATT
1 TATTTTATTTATTACATT
* *
105072587 TATTTTATTTTCTTAAATT
1 TATTTTA-TTTATTACATT
* *
105072606 TA-TTTATTTTTTGCATT
1 TATTTTATTTATTACATT
*
105072623 TGTTTTATTT
1 TATTTTATTT
105072633 TATTTTCCGT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
17 9 0.24
18 18 0.49
19 10 0.27
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (18 bp):
TATTTTATTTATTACATT
Found at i:105077741 original size:22 final size:21
Alignment explanation
Indices: 105077715--105077775 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 21
105077705 ATTAAATGTA
105077715 CAAGATTACAAGATCATATCTT
1 CAAGATTAC-AGATCATATCTT
* *
105077737 CAAGATTGCATATCATATC-T
1 CAAGATTACAGATCATATCTT
* *
105077757 -AAGATTGCATATCATATCT
1 CAAGATTACAGATCATATCT
105077776 AAGATTGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
19 18 0.50
20 1 0.03
21 9 0.25
22 8 0.22
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (21 bp):
CAAGATTACAGATCATATCTT
Found at i:105077762 original size:19 final size:19
Alignment explanation
Indices: 105077727--105077788 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
105077717 AGATTACAAG
105077727 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
105077748 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105077767 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105077786 ATC
1 ATC
105077789 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:105078345 original size:87 final size:86
Alignment explanation
Indices: 105078201--105078680 Score: 258
Period size: 87 Copynumber: 5.5 Consensus size: 86
105078191 GCAATACAGA
* *
105078201 GATGCCAAATCATCTTAGATCTGCTTCAGCGT-AAACA-CGTGAAAGCCAAATCTGCTATGTCTT
1 GATGCCAAATCATCTTGGATCTGCTTCA--GTAAAACATC-TGAAAGTCAAATCTGCTATGTCTT
*
105078264 CGATTTACTCCTTGTGAACACAAG
63 CGATTTGCTCCTTGTGAACACAAG
* * * *
105078288 GATGCCAAATCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCAGCTATG---T--
1 GATGCCAAATCATCTTGGATCTGCTTCAGTAAAA-CATCTGAAAGTCAAATCTGCTATGTCTTCG
* **
105078348 ATCTGCT-CTCTGTCGAA-A-TGG
65 ATTTGCTCCT-TGT-GAACACAAG
** ** *
105078369 AGATGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTAAAAGTCAAATCTGCTAT
1 -GATGCCAAATC----ATCTTGGATCTGC-TT-CAGTAA-AACATCTGAAAGTCAAATCTGCTAT
* *
105078434 GTCTTCGATTTGTTCCTTGTAAACACAAG
58 GTCTTCGATTTGCTCCTTGTGAACACAAG
* * * * * * *
105078463 AATGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCT-
1 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAAAGTCAAATCTGCTATGT-CTTC
* *
105078527 G--CT-CTCC--GTCAA-A-ATAG
64 GATTTGCTCCTTGTGAACACA-AG
* ** * * **
105078544 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTATTAT
1 -GATGCCAAATC----ATCTTGGATCTGC-TT-CAGT-AAAACATCTGAAAGTCAAATCTGCTAT
* *
105078609 GTCTTCGATTTGTTCCTTGTAAACACAAG
58 GTCTTCGATTTGCTCCTTGTGAACACAAG
* * *
105078638 AATGCCAAATCATCTTGGATCTGATTCAATATAAACATCTGAA
1 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAACATCTGAA
105078681 GGTTAGACCT
Statistics
Matches: 288, Mismatches: 64, Indels: 82
0.66 0.15 0.19
Matches are distributed among these distances:
80 1 0.00
81 6 0.02
82 31 0.11
83 3 0.01
84 4 0.01
85 3 0.01
86 29 0.10
87 86 0.30
88 54 0.19
89 27 0.09
90 1 0.00
91 4 0.01
92 2 0.01
93 30 0.10
94 6 0.02
95 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (86 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTAAAACATCTGAAAGTCAAATCTGCTATGTCTTCGA
TTTGCTCCTTGTGAACACAAG
Found at i:105078443 original size:175 final size:175
Alignment explanation
Indices: 105078242--105078823 Score: 923
Period size: 175 Copynumber: 3.3 Consensus size: 175
105078232 TAAACACGTG
* ** * *
105078242 AAAGCCAAATCTGCTATGTCTTCGATTTACTCCTTGTGAACACAAGGATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * * *
105078307 TCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCAGCTATGTATCTGCTCTCTGTCGAAATGGAG
66 TCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* * *
105078371 ATGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTA
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
105078417 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
105078482 TCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCAAAATAGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
*
105078547 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCG
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
**
105078592 AAAGTCAAATCTATTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
105078657 TCTGATTCAATATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
105078722 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
* * * * *
105078767 AAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATC
1 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
105078824 TGCTATCTTC
Statistics
Matches: 375, Mismatches: 31, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
175 372 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (175 bp):
AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
Found at i:105078746 original size:86 final size:86
Alignment explanation
Indices: 105078299--105078746 Score: 222
Period size: 88 Copynumber: 5.1 Consensus size: 86
105078289 ATGCCAAATC
* * * * *
105078299 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCAGCTATGTATCTGCTCTCTGTCG
1 ATCTTGGATCTGATTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCG
* *
105078363 AAATGGAGATGCCAGGTCTGTT
65 AAATAGAGATGCCAGATCTGTT
* ** * * * * * * * * *
105078385 ATCTTGGATCTGCTTTGGTGTAAGAACATCTAAAAGTCAAATCTGCTATGT-CTTCGATTTGTTC
1 ATCTTGGATCTGATTCAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTACCT-G--CT-CTC
* * * *
105078449 C-TTGTAAACACAAGAATGCCAAATC----
60 CGTCG-AAATA-GAG-ATGCCAGATCTGTT
*
105078474 ATCTTGGATCT-ACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCA
1 ATCTTGGATCTGA-TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCG
105078538 AAATAGAGATGCCAGATCTGTT
65 AAATAGAGATGCCAGATCTGTT
* ** * * * * * * ** * * *
105078560 ATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTATTATGT-CTTCGATTTGTTC
1 ATCTTGGATCTGATTCAGTAT-A-AACATCTGAAGGTTAGACCTGCTATGTACCT-G--CT-CTC
* * * *
105078624 C-TTGTAAACACAAGAATGCCAAATC----
60 CGTCG-AAATA-GAG-ATGCCAGATCTGTT
*
105078649 ATCTTGGATCTGATTCAATATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
1 ATCTTGGATCTGATTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
*
105078714 AATGGAGATGCCAGATCTGTT
66 AATAGAGATGCCAGATCTGTT
105078735 ATCTTGGATCTG
1 ATCTTGGATCTG
105078747 CTTTGGTGTG
Statistics
Matches: 254, Mismatches: 75, Indels: 66
0.64 0.19 0.17
Matches are distributed among these distances:
82 18 0.07
83 4 0.02
84 13 0.05
85 5 0.02
86 45 0.18
87 48 0.19
88 49 0.19
89 34 0.13
90 5 0.02
91 12 0.05
92 4 0.02
93 17 0.07
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (86 bp):
ATCTTGGATCTGATTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGA
AATAGAGATGCCAGATCTGTT
Found at i:105078831 original size:93 final size:92
Alignment explanation
Indices: 105078370--105078832 Score: 260
Period size: 87 Copynumber: 5.2 Consensus size: 92
105078360 TCGAAATGGA
** * * *
105078370 GATGCCAGGTCTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCTAAAAGTCAAATCTGCTATG
1 GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAGATCTGCTATG
* *
105078435 TCTTCGATTTGTTCCTTGTAAACACAAG
65 TCTTCGATTTGTTCCCTGTAAACACAGG
* * ** * * * *
105078463 AATGCCAAA--T-C-ATCTTGGATCTACTTCAGTATA-AACATCTGAAGGTTAGACCTGCTATGT
1 GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAGATCTGCTATGT
* * *
105078523 AC--C----TGCTCTCC-GTCAAA-ATAGA
66 -CTTCGATTTGTTC-CCTGT-AAACACAGG
* * * * **
105078545 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTATTATG
1 GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAGATCTGCTATG
* *
105078610 TCTTCGATTTGTTCCTTGTAAACACAAG
65 TCTTCGATTTGTTCCCTGTAAACACAGG
* * *** * * * *
105078638 AATGCCAAA--T-C-ATCTTGGATCTGATTCAATATA-AACATCTGAAGGTTAGACCTGCTATGT
1 GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAGATCTGCTATGT
* * *
105078698 AC--C----TGCTCTCC-GTCGAA-A-TGG
66 -CTTCGATTTGTTC-CCTGT-AAACACAGG
* * ** *
105078719 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCAAAAATCAGATCTGCTAT
1 -GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGT-AGAACATCTGAAAGTCAGATCTGCTAT
105078784 GTCTTCGATTTGTTCCCTGTAAACACAGG
64 GTCTTCGATTTGTTCCCTGTAAACACAGG
105078813 GATGCCAAATCTGCTATCTT
1 GATGCCAAATCTGCTATCTT
105078833 CAACTTGTTC
Statistics
Matches: 258, Mismatches: 76, Indels: 72
0.64 0.19 0.18
Matches are distributed among these distances:
81 1 0.00
82 29 0.11
83 7 0.03
84 2 0.01
86 35 0.14
87 46 0.18
88 45 0.17
89 35 0.14
91 2 0.01
92 8 0.03
93 46 0.18
94 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (92 bp):
GATGCCAAATCTGCTATCTTGGATCTGCTTTGGTGTAGAACATCTGAAAGTCAGATCTGCTATGT
CTTCGATTTGTTCCCTGTAAACACAGG
Found at i:105078841 original size:44 final size:44
Alignment explanation
Indices: 105078775--105079089 Score: 248
Period size: 44 Copynumber: 7.1 Consensus size: 44
105078765 CAAAAATCAG
* *
105078775 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAA
1 ATCTGCTA--TCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
* * *
105078821 ATCTGCTATCTTCAACTTGTTCCCTATAAACATAGGGATGCCAT
1 ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
* *** * * * * * * *
105078865 GT-TAAAATCTTTGA-TCTGTTTCGCTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGACT-TG-TTCCCTATAAACACAGGGATGCCAA
*
105078909 ATCTGCTATCTTCGA-TCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGACT-TGTTCCCTATAAACACAGGGATGCCAA
*
105078953 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
105078995 ATGCTGAAATCTTCGATTTGCTTCACTGTAAGCACA-GGAGTGTCAG
1 AT-CTGCTATCTTCGACTTG-TTCCCTATAAACACAGGGA-TGCCAA
*
105079041 ATCTGCTATCTTCGATCTAT-TTCCCTATAAACACAGAGATGCCAA
1 ATCTGCTATCTTCGA-CT-TGTTCCCTATAAACACAGGGATGCCAA
105079086 ATCT
1 ATCT
105079090 TGTTTCTTTG
Statistics
Matches: 208, Mismatches: 49, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.01
43 25 0.12
44 122 0.59
45 44 0.21
46 13 0.06
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (44 bp):
ATCTGCTATCTTCGACTTGTTCCCTATAAACACAGGGATGCCAA
Found at i:105078946 original size:132 final size:132
Alignment explanation
Indices: 105078771--105079089 Score: 494
Period size: 132 Copynumber: 2.4 Consensus size: 132
105078761 CATCCAAAAA
* *
105078771 TCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATCTGCTATCTTCAA
1 TCAGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA
* * * * *
105078836 CTTGTTCCCTATAAACATAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGG
64 CTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGG
105078901 AATG
129 AATG
*
105078905 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* * *
105078970 TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATTTGCTTCACTGTAAGCACAGGAG
66 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
105079035 TG
131 TG
* *
105079037 TCAGATCTGCTATCTTCGATCTATTTCCCTATAAACACAGAGATGCCAAATCT
1 TCAGATCTGCTATCTTCGATCT-GTTCCCTATAAACACAGGGATGCCAAATCT
105079090 TGTTTCTTTG
Statistics
Matches: 170, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
132 131 0.77
133 27 0.16
134 12 0.07
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAA
TG
Found at i:105080015 original size:15 final size:16
Alignment explanation
Indices: 105079995--105080026 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
105079985 TTGGCCTCTC
105079995 TATTTTTTT-TATTTT
1 TATTTTTTTCTATTTT
105080010 TATTTTTTTCTATTTT
1 TATTTTTTTCTATTTT
105080026 T
1 T
105080027 CTTCTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TATTTTTTTCTATTTT
Found at i:105085128 original size:22 final size:21
Alignment explanation
Indices: 105085098--105085145 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
105085088 TACAAATTAA
105085098 ATCTACAAGATTACAAGATCAT
1 ATCTACAAGATTAC-AGATCAT
* * *
105085120 ATCTTCAAGATTGCATATCAT
1 ATCTACAAGATTACAGATCAT
105085141 ATCTA
1 ATCTA
105085146 AGATTGTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (21 bp):
ATCTACAAGATTACAGATCAT
Found at i:105085150 original size:19 final size:19
Alignment explanation
Indices: 105085115--105085210 Score: 146
Period size: 17 Copynumber: 5.2 Consensus size: 19
105085105 AGATTACAAG
105085115 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
105085136 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
105085153 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105085172 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
105085189 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
105085208 ATC
1 ATC
105085211 CTTAAAGATT
Statistics
Matches: 71, Mismatches: 0, Indels: 10
0.88 0.00 0.12
Matches are distributed among these distances:
17 34 0.48
19 28 0.39
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:105085170 original size:36 final size:36
Alignment explanation
Indices: 105085115--105085210 Score: 174
Period size: 36 Copynumber: 2.6 Consensus size: 36
105085105 AGATTACAAG
105085115 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGT
105085153 ATCATATCTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGT
105085189 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATC
105085211 CTTAAAGATT
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 49 0.84
37 1 0.02
38 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (36 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGT
Found at i:105087302 original size:23 final size:23
Alignment explanation
Indices: 105087276--105087327 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
105087266 TGATTTTTAA
*
105087276 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
105087299 ATTTAGAATTATCTAGTGATAAT
1 ATTTAGAATTATCTAGTGATAAT
105087322 ATTTAG
1 ATTTAG
105087328 GAAAAATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.46
Consensus pattern (23 bp):
ATTTAGAATTATCTAGTGATAAT
Found at i:105087609 original size:6 final size:6
Alignment explanation
Indices: 105087598--105087632 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
105087588 AAACACCCCA
105087598 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA
105087633 GCATTTCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:105093037 original size:55 final size:53
Alignment explanation
Indices: 105092949--105093204 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 53
105092939 CATTAGGGTT
*
105092949 CAAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * * * *
105093004 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * *
105093059 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGG
*
105093112 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATT-GTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGG
* * *
105093162 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CAAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
105093205 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
48 1 0.01
49 38 0.22
52 7 0.04
53 38 0.22
54 14 0.08
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:105093156 original size:108 final size:110
Alignment explanation
Indices: 105092957--105093157 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 110
105092947 TTCAAGGATA
*
105092957 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
105093022 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
* * *
105093067 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
105093129 ACCATGTCAAGACATGGCAATTG-TAAGTT
65 ACCATGTCAAGACATGGC-ATTGATAAGTT
105093158 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.53
109 11 0.13
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
Found at i:105097086 original size:20 final size:20
Alignment explanation
Indices: 105097061--105097110 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
105097051 TGGCTTAAAA
105097061 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
105097081 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
105097098 GTGGTAGTGGATT
1 TTGGTAGTGGATT
105097111 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:105101725 original size:20 final size:20
Alignment explanation
Indices: 105101700--105101749 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
105101690 TGGCTTAAAA
105101700 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
105101720 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
105101737 GTGGTAGTGGATT
1 TTGGTAGTGGATT
105101750 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:105104928 original size:14 final size:14
Alignment explanation
Indices: 105104909--105104956 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
105104899 TGTTAATTTT
105104909 TATTATTAAAATAA
1 TATTATTAAAATAA
*
105104923 TATTATAATGTTAAATAA
1 TA-T-T-AT-TAAAATAA
105104941 TATTATTAAAATAA
1 TATTATTAAAATAA
105104955 TA
1 TA
105104957 AATTATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 11 0.39
15 3 0.11
16 2 0.07
17 3 0.11
18 9 0.32
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TATTATTAAAATAA
Found at i:105104945 original size:32 final size:33
Alignment explanation
Indices: 105104883--105104956 Score: 100
Period size: 32 Copynumber: 2.3 Consensus size: 33
105104873 TATTTAAAAT
* **
105104883 TTAAAAT-A-ATTATTAATGTTAATTTTTATTA
1 TTAAAATAATATTATTAATGTTAAATAATATTA
105104914 TTAAAATAATATTA-TAATGTTAAATAATATTA
1 TTAAAATAATATTATTAATGTTAAATAATATTA
105104946 TTAAAATAATA
1 TTAAAATAATA
105104957 AATTATATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 7 0.18
32 27 0.71
33 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (33 bp):
TTAAAATAATATTATTAATGTTAAATAATATTA
Found at i:105104947 original size:21 final size:21
Alignment explanation
Indices: 105104918--105104972 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
105104908 TTATTATTAA
* **
105104918 AATAATATTATAATGTTAAAT
1 AATATTATTATAATAATAAAT
*
105104939 AATATTATTAAAATAATAAAT
1 AATATTATTATAATAATAAAT
*
105104960 TATATTAATTATA
1 AATATT-ATTATA
105104973 GGAATAATAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AATATTATTATAATAATAAAT
Found at i:105106470 original size:22 final size:21
Alignment explanation
Indices: 105106445--105106485 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
105106435 ATCTCAACCC
*
105106445 AATACATATGCATAATCAAACT
1 AATACATATCCAT-ATCAAACT
*
105106467 AATATATATCCATATCAAA
1 AATACATATCCATATCAAA
105106486 TGAGATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.29
Consensus pattern (21 bp):
AATACATATCCATATCAAACT
Found at i:105115399 original size:24 final size:23
Alignment explanation
Indices: 105115364--105115408 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
105115354 AACATAGACC
*
105115364 ACAAAAACCAAACACAGAAAAAAT
1 ACAAAAACCAAAC-CACAAAAAAT
105115388 ACAACAAA-CAAACCACAAAAA
1 ACAA-AAACCAAACCACAAAAA
105115409 CCCCCCACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 9 0.47
25 3 0.16
ACGTcount: A:0.71, C:0.24, G:0.02, T:0.02
Consensus pattern (23 bp):
ACAAAAACCAAACCACAAAAAAT
Found at i:105116666 original size:24 final size:24
Alignment explanation
Indices: 105116634--105116682 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
105116624 TCTTCATCTA
105116634 AGAAGTCCACATTATTTACAAACC
1 AGAAGTCCACATTATTTACAAACC
105116658 AGAAGTCCACATTATTTACAAACC
1 AGAAGTCCACATTATTTACAAACC
105116682 A
1 A
105116683 ATCTTCATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.24
Consensus pattern (24 bp):
AGAAGTCCACATTATTTACAAACC
Found at i:105122015 original size:18 final size:18
Alignment explanation
Indices: 105121992--105122118 Score: 200
Period size: 18 Copynumber: 7.1 Consensus size: 18
105121982 CAACTACTGC
*
105121992 ATACGTGAACAGTACCGT
1 ATACGTGAATAGTACCGT
*
105122010 ATACGTGAATAGTGCCGT
1 ATACGTGAATAGTACCGT
* *
105122028 ATACGTGAATAGTACTGC
1 ATACGTGAATAGTACCGT
105122046 ATACGTGAATAGTACCGT
1 ATACGTGAATAGTACCGT
*
105122064 ATACGTGAATAGTACTGT
1 ATACGTGAATAGTACCGT
*
105122082 ATACGTGAATAGTGCCGT
1 ATACGTGAATAGTACCGT
105122100 ATACGTGAATAGTACCGT
1 ATACGTGAATAGTACCGT
105122118 A
1 A
105122119 AACGGTCGTA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 98 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (18 bp):
ATACGTGAATAGTACCGT
Found at i:105125227 original size:5 final size:5
Alignment explanation
Indices: 105125217--105125268 Score: 52
Period size: 5 Copynumber: 10.4 Consensus size: 5
105125207 GTTATGTATA
* * * *
105125217 ATAAT ATAAT ATGAAT AAAAT ATAAG AAAAT ATAAT ATAAA ATAAT A-AAT
1 ATAAT ATAAT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
105125267 AT
1 AT
105125269 TTTGCATATG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
4 4 0.11
5 29 0.78
6 4 0.11
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (5 bp):
ATAAT
Found at i:105127924 original size:284 final size:287
Alignment explanation
Indices: 105127267--105127976 Score: 1018
Period size: 284 Copynumber: 2.5 Consensus size: 287
105127257 AAATCTACTT
* * *
105127267 CTTCGATTTCTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * *
105127332 GCGAAAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCCAAATTATCT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGAT-ACCAAATCATCT
* * * *
105127397 TGGATCTATTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACAG
130 TGGATCTATTTGAGAACATCTAAGAGTCAAATATACTATGTCCTCGATTTGTTCCTTGTAAACAC
* * *
105127462 AAGAAGGCCAAGTAATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGT
195 AAGAAGGCCAAATAATCTTGGATCTACTT-A-TATAAACATCTGAAGGTGAGATCTGCTATGTAT
* *
105127527 CTGCCCTCCGTCGAATATGGAGACGCCAAA
258 CTGCCCTCCGTCGAATATGAAAACGCCAAA
* *
105127557 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGTTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * * *
105127622 ATGAAAGCCAAATCAGCTATGGTTTCAATTTGTTTCTTGTAAACACAAGGATACCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTT
*
105127687 GGATCTGTTTGAGAACATCTAAGAGTCAAATATACTATGTCCTCGATTTGTTCCTTGTAAACACA
131 GGATCTATTTGAGAACATCTAAGAGTCAAATATACTATGTCCTCGATTTGTTCCTTGTAAACACA
* * * *
105127752 AGAATGCCAAATCATCTTGGATCTGC-T-TATAAACATCTGAAGGTGAGATTTGCTATGTATCTG
196 AGAAGGCCAAATAATCTTGGATCTACTTATATAAACATCTGAAGGTGAGATCTGCTATGTATCTG
* * *
105127815 CTCC-CCGTCGAA-GTGAAAATGCCAGA
261 C-CCTCCGTCGAATATGAAAACGCCAAA
*
105127841 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
* * *
105127906 GTGAAAGCCAAATCAGCTAT-GTCTTCGGA-TTGTTCCTTGTAAGCAAAAGGATGCCAAACCATC
66 GTGAAAGCCAAATCAGCTATGGT-TTC-GATTTGTTCCTTGTAAGCACAAGGATACCAAATCATC
105127969 TTGGATCT
129 TTGGATCT
105127977 TGCTTCAGCC
Statistics
Matches: 377, Mismatches: 40, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
283 2 0.01
284 130 0.34
285 43 0.11
286 2 0.01
288 1 0.00
289 93 0.25
290 106 0.28
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (287 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATACCAAATCATCTT
GGATCTATTTGAGAACATCTAAGAGTCAAATATACTATGTCCTCGATTTGTTCCTTGTAAACACA
AGAAGGCCAAATAATCTTGGATCTACTTATATAAACATCTGAAGGTGAGATCTGCTATGTATCTG
CCCTCCGTCGAATATGAAAACGCCAAA
Found at i:105130355 original size:24 final size:25
Alignment explanation
Indices: 105130310--105130360 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
105130300 ATCAGGAAAT
105130310 GATTTAGAAGCTGATAAGGGAG-AA
1 GATTTAGAAGCTGATAAGGGAGCAA
*
105130334 GATTTAGGAGCTGATCAA-GGAGCAA
1 GATTTAGAAGCTGAT-AAGGGAGCAA
105130359 GA
1 GA
105130361 GTTGGTCGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.39, C:0.08, G:0.33, T:0.20
Consensus pattern (25 bp):
GATTTAGAAGCTGATAAGGGAGCAA
Found at i:105131839 original size:54 final size:53
Alignment explanation
Indices: 105131755--105131865 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 53
105131745 AGGAAGCGTC
* *
105131755 CTGGTGGCTATGCCACAACTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * * *
105131809 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATTATCTATT
105131862 CTGG
1 CTGG
105131866 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 11 0.22
54 40 0.78
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAACTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:105131863 original size:26 final size:26
Alignment explanation
Indices: 105131755--105131865 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
105131745 AGGAAGCGTC
* * *
105131755 CTGGTGGCTATGCCACAACTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
105131782 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
105131809 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * *
105131836 CTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTGTT
105131862 CTGG
1 CTGG
105131866 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.18
27 60 0.79
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:105138830 original size:14 final size:14
Alignment explanation
Indices: 105138813--105138848 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
105138803 TCTCTTGATT
*
105138813 TCTCTCTTCTCTAC
1 TCTCTCTTCTCTAA
*
105138827 TCTCTTTTCTCTAA
1 TCTCTCTTCTCTAA
105138841 TCTCTCTT
1 TCTCTCTT
105138849 ATTCTTACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (14 bp):
TCTCTCTTCTCTAA
Found at i:105140699 original size:3 final size:3
Alignment explanation
Indices: 105140691--105140768 Score: 63
Period size: 3 Copynumber: 25.0 Consensus size: 3
105140681 TTATTTGTAA
*
105140691 TAT TAT TA- TAT TAGT TA- TAT TTT TCAT TAT TATT TATT TATT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT T-AT TAT TA-T TA-T TA-T TAT
*
105140736 TAT TACT T-C TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
105140769 CATCATACTG
Statistics
Matches: 64, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
2 5 0.08
3 41 0.64
4 18 0.28
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:105140735 original size:15 final size:13
Alignment explanation
Indices: 105140691--105140768 Score: 72
Period size: 15 Copynumber: 5.7 Consensus size: 13
105140681 TTATTTGTAA
105140691 TATTATTATATTAGT
1 TATTATTAT-TTA-T
105140706 TA-TATT-TTTCAT
1 TATTATTATTT-AT
105140718 TATTATTTATTTATT
1 TATTA-TTATTTA-T
105140733 TATTATTACTTCTAT
1 TATTATTA-TT-TAT
105140748 TATTATTA-TTAT
1 TATTATTATTTAT
105140760 TATTATTAT
1 TATTATTAT
105140769 CATCATACTG
Statistics
Matches: 55, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
12 16 0.29
13 5 0.09
14 10 0.18
15 22 0.40
16 2 0.04
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
TATTATTATTTAT
Found at i:105143307 original size:17 final size:16
Alignment explanation
Indices: 105143257--105143312 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
105143247 AATTAATTTA
*
105143257 ATAAAATATAAA-AAT
1 ATAAAATATAAATATT
105143272 ATAAAA-ATACAATACTT
1 ATAAAATATA-AATA-TT
105143289 ATAAAATTATAAATATT
1 ATAAAA-TATAAATATT
105143306 ATTAAAA
1 A-TAAAA
105143313 ATTCAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
14 3 0.09
15 8 0.24
16 1 0.03
17 10 0.29
18 9 0.26
19 3 0.09
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAATATAAATATT
Found at i:105145444 original size:22 final size:21
Alignment explanation
Indices: 105145418--105145467 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
105145408 CTTTTCTCAC
105145418 ATTAT-ATATTATAAATTCATTT
1 ATTATCAT-TTATAAATT-ATTT
*
105145440 ATTATCATTTTTAAATTATTT
1 ATTATCATTTATAAATTATTT
105145461 -TTA-CATT
1 ATTATCATT
105145468 CTATTTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 4 0.15
20 3 0.12
21 4 0.15
22 13 0.50
23 2 0.08
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATCATTTATAAATTATTT
Found at i:105148890 original size:26 final size:26
Alignment explanation
Indices: 105148854--105148989 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
105148844 CATGAAATTC
*
105148854 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
105148880 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
105148906 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
105148932 TTATCATGCAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
105148958 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
105148984 TTATCA
1 TTATCA
105148990 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:105153195 original size:25 final size:26
Alignment explanation
Indices: 105153158--105153210 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
105153148 TCAAACATGC
105153158 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTT-ACCACTAGGGGT
*
105153184 ATTTCGGT-AATTTACCTACTAGGGGT
1 ATTTAGGTCAATTTACC-ACTAGGGGT
105153210 A
1 A
105153211 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (26 bp):
ATTTAGGTCAATTTACCACTAGGGGT
Found at i:105154733 original size:26 final size:26
Alignment explanation
Indices: 105154697--105154855 Score: 218
Period size: 26 Copynumber: 6.3 Consensus size: 26
105154687 CATGAAATTC
105154697 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
105154723 TTATCATGAAACATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
105154749 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
105154775 TTATCATGGAACATTTACCTAA-CC-
1 TTATCATGAAACATTTACCTAACCCA
* * *
105154799 -TATTATGGAACA-TTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
105154823 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
105154849 TTATCAT
1 TTATCAT
105154856 TTTGTATCAA
Statistics
Matches: 120, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
22 8 0.07
23 12 0.10
25 11 0.09
26 89 0.74
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:105154778 original size:52 final size:51
Alignment explanation
Indices: 105154697--105154855 Score: 243
Period size: 52 Copynumber: 3.1 Consensus size: 51
105154687 CATGAAATTC
* *
105154697 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAATCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAA-CCA
*
105154749 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACC-
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
*
105154799 -TATTATGGAACA-TTACCTAACCTATTATCATGAAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACC-A
105154849 TTATCAT
1 TTATCAT
105154856 TTTGTATCAA
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
48 35 0.36
49 11 0.11
51 7 0.07
52 45 0.46
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (51 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
Found at i:105154836 original size:48 final size:49
Alignment explanation
Indices: 105154706--105154852 Score: 233
Period size: 48 Copynumber: 3.0 Consensus size: 49
105154696 CTTATCATGA
* *
105154706 AACATTTACCTAACCCATTATCATGAAACATTTACCTAATCCATTATCATGG
1 AACATTTACCTAACCTATTATCATGAAACATTTACCTAA-CC--TATTATGG
*
105154758 AACATTTACCTAACCTATTATCATGGAACATTTACCTAACCTATTATGG
1 AACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTATTATGG
105154807 AACA-TTACCTAACCTATTATCATGAAACATTTACCTAACCTATTAT
1 AACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTATTAT
105154853 CATTTTGTAT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
48 41 0.45
49 11 0.12
51 2 0.02
52 37 0.41
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (49 bp):
AACATTTACCTAACCTATTATCATGAAACATTTACCTAACCTATTATGG
Found at i:105156367 original size:22 final size:21
Alignment explanation
Indices: 105156342--105156521 Score: 73
Period size: 22 Copynumber: 8.1 Consensus size: 21
105156332 ATGTTGTATG
105156342 TATTTTCATTATATATATTATT
1 TATTTT-ATTATATATATTATT
* *
105156364 TATTTTACTATAT-T-TTATC
1 TATTTTATTATATATATTATT
*
105156383 TATTATATTATTATATATGT-TT
1 TATTTTATTA-TATATAT-TATT
* *
105156405 AATTTTTATTATATATTTTATAT
1 TA-TTTTATTATATATATTAT-T
* *
105156428 ATATATTATTTATATCTATATTATA
1 -TATTTTA-TTATA--TATATTATT
* * * *
105156453 TGTTTTAGTACATGTTATT-TT
1 TATTTTATTATAT-ATATTATT
105156474 TATATATTATATATTATATATTATT
1 TAT-T-TTAT-TA-TATATATTATT
* * *
105156499 CATATTATTACATAT-TTATT
1 TATTTTATTATATATATTATT
105156519 TAT
1 TAT
105156522 AAAGTTAGTA
Statistics
Matches: 115, Mismatches: 26, Indels: 36
0.65 0.15 0.20
Matches are distributed among these distances:
19 12 0.10
20 11 0.10
21 16 0.14
22 23 0.20
23 23 0.20
24 17 0.15
25 6 0.05
26 7 0.06
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTTTATTATATATATTATT
Found at i:105156389 original size:35 final size:36
Alignment explanation
Indices: 105156349--105156507 Score: 100
Period size: 35 Copynumber: 4.4 Consensus size: 36
105156339 ATGTATTTTC
*
105156349 ATTATATATATTATTTATTTTACTATATT-TTATCT
1 ATTATATATATTATTTATTTTACTATATTATTATAT
* * *
105156384 ATTATAT-TATTATATATGTTTAAT-TTTTATTATAT
1 ATTATATATATTATTTAT-TTTACTATATTATTATAT
* *
105156419 ATTTTATATA-TATATTATTTATATCTATATTA-TATGT
1 ATTATATATATTAT-TTATTT-TA-CTATATTATTATAT
* * * *
105156456 TTTAGTACATGTTATTT-TTATA-TATTATATATTATAT
1 ATTA-TATATATTATTTATTTTACTA-TAT-TATTATAT
105156493 ATTAT-TCATATTATT
1 ATTATAT-ATATTATT
105156508 ACATATTTAT
Statistics
Matches: 93, Mismatches: 18, Indels: 25
0.68 0.13 0.18
Matches are distributed among these distances:
34 14 0.15
35 31 0.33
36 19 0.20
37 16 0.17
38 10 0.11
39 3 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (36 bp):
ATTATATATATTATTTATTTTACTATATTATTATAT
Found at i:105156396 original size:15 final size:15
Alignment explanation
Indices: 105156349--105156497 Score: 82
Period size: 15 Copynumber: 10.0 Consensus size: 15
105156339 ATGTATTTTC
105156349 ATTA-TATATATTAT
1 ATTATTATATATTAT
*
105156363 -TTATT-T-TACTAT
1 ATTATTATATATTAT
*
105156375 ATT-TTATCTATTAT
1 ATTATTATATATTAT
*
105156389 ATTATTATATATGTTT
1 ATTATTATATAT-TAT
*
105156405 AATTTTTAT-TATATAT
1 -ATTATTATATAT-TAT
*
105156421 TTTATATATATATTAT
1 ATTAT-TATATATTAT
*
105156437 -TTATATCTATATTAT
1 ATTAT-TATATATTAT
* *
105156452 ATGTTTTAGTACATGT-T
1 AT-TATTA-TATAT-TAT
*
105156469 ATTTTTATATATTAT
1 ATTATTATATATTAT
105156484 A-TATTATATATTAT
1 ATTATTATATATTAT
105156498 TCATATTATT
Statistics
Matches: 106, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
12 7 0.07
13 7 0.07
14 22 0.21
15 30 0.28
16 20 0.19
17 19 0.18
18 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (15 bp):
ATTATTATATATTAT
Found at i:105156452 original size:20 final size:21
Alignment explanation
Indices: 105156383--105156453 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 21
105156373 ATATTTTATC
* *
105156383 TATTATATTATTATATATGTT
1 TATTATATTATTATATATCTA
*
105156404 TAATT-T-TTATTATATATTTTA
1 T-ATTATATTATTATATA-TCTA
105156425 TATATATATTATT-TATATCTA
1 TAT-TATATTATTATATATCTA
105156446 TATTATAT
1 TATTATAT
105156454 GTTTTAGTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
20 17 0.40
21 12 0.29
22 8 0.19
23 5 0.12
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (21 bp):
TATTATATTATTATATATCTA
Found at i:105156514 original size:7 final size:7
Alignment explanation
Indices: 105156353--105156497 Score: 81
Period size: 7 Copynumber: 21.4 Consensus size: 7
105156343 ATTTTCATTA
105156353 TATATAT
1 TATATAT
*
105156360 TATTTAT
1 TATATAT
*
105156367 T-T-TAC
1 TATATAT
*
105156372 TATATTT
1 TATATAT
*
105156379 TATCTAT
1 TATATAT
105156386 TATATTAT
1 TATA-TAT
105156394 TATATAT
1 TATATAT
*
105156401 GTTTA-AT
1 -TATATAT
*
105156408 T-TTTAT
1 TATATAT
105156414 TATATAT
1 TATATAT
*
105156421 TTTATA-
1 TATATAT
105156427 TATATAT
1 TATATAT
*
105156434 TATTTAT
1 TATATAT
*
105156441 ATCTATAT
1 -TATATAT
*
105156449 TATATGT
1 TATATAT
*
105156456 T-T-TAG
1 TATATAT
* *
105156461 TACATGT
1 TATATAT
*
105156468 TAT-TTT
1 TATATAT
105156474 TATATAT
1 TATATAT
105156481 TATATAT
1 TATATAT
105156488 TATATAT
1 TATATAT
105156495 TAT
1 TAT
105156498 TCATATTATT
Statistics
Matches: 102, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
5 6 0.06
6 17 0.17
7 64 0.63
8 15 0.15
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (7 bp):
TATATAT
Found at i:105161240 original size:421 final size:421
Alignment explanation
Indices: 105160451--105161276 Score: 1526
Period size: 421 Copynumber: 2.0 Consensus size: 421
105160441 GCCTATGGGC
105160451 AAAAGTGTATTTGTAATCTATTTTATGAAAAGATTTTTGTTCCTTAAATAACATTTTCTAAAATG
1 AAAAGTGTATTTGTAATCTATTTTATGAAAAGATTTTTGTTCCTTAAATAACATTTTCTAAAATG
105160516 AAACTGAGTCAGAATCGACATTTTTTTGCATTCATGCATTTGCATTTCATTACATCATATGCATT
66 AAACTGAGTCAGAATCGACATTTTTTTGCATTCATGCATTTGCATTTCATTACATCATATGCATT
105160581 CAAGTTTATAGAAAGACCCTAATTAAGTTAAAATTATTAGGAAGAAAAAGAGTAAGAAATAGGAA
131 CAAGTTTATAGAAAGACCCTAATTAAGTTAAAATTATTAGGAAGAAAAAGAGTAAGAAATAGGAA
*
105160646 ATCTCGAAGCAACACATCCCTACGGTACATGCGCTAAGTCGAAGAATATGGACCAAAGATTTGGG
196 ATCTCGAAGCAACACATCCCTACGGTACATGCGCTAAGTCGAAGAATATGGACCAAAGATTTGAG
*
105160711 CAGTTACAGAAGGACATGTAGGACCAATTGCAAGAACAATTGGCCAAGATGCAAAATGACATGAG
261 CAGTTACAGAAGGACATGCAGGACCAATTGCAAGAACAATTGGCCAAGATGCAAAATGACATGAG
*
105160776 AGAGCATATGCTAGAGGCTCAGAGAAATATAATGGTCGAAATGGCTCAACTACTGAGGGCCACTG
326 AGAGCATATGCTAGAGGCTCAGAGAAATATAATGGCCGAAATGGCTCAACTACTGAGGGCCACTG
105160841 ATAAGGGAAAGGCTCTCATGGCAATTGCTGG
391 ATAAGGGAAAGGCTCTCATGGCAATTGCTGG
* *
105160872 AAAATTGTATTTGTAATCTATTTTATGAAAAGATTTTTGTTCCTTAAGTAACATTTTCTAAAATG
1 AAAAGTGTATTTGTAATCTATTTTATGAAAAGATTTTTGTTCCTTAAATAACATTTTCTAAAATG
105160937 AAACTGAGTCAGAATCGACATTTTTTTGCATTCATGCATTTGCATTTCATTACATCATATGCATT
66 AAACTGAGTCAGAATCGACATTTTTTTGCATTCATGCATTTGCATTTCATTACATCATATGCATT
*
105161002 CAAGTTTATAGAAAGACCCTAATTAAGTTAAAATTATTAGGAAGAAAGAGAGTAAGAAATAGGAA
131 CAAGTTTATAGAAAGACCCTAATTAAGTTAAAATTATTAGGAAGAAAAAGAGTAAGAAATAGGAA
* *
105161067 ATCTGGAAGCAACACATCCCTATGGTACATGCGCTAAGTCGAAGAATATGGACCAAAGATTTGAG
196 ATCTCGAAGCAACACATCCCTACGGTACATGCGCTAAGTCGAAGAATATGGACCAAAGATTTGAG
* *
105161132 CAGTTACAGAAGGACATGCAGGACCAATTGTAAGAACAATTGGCCAAGATGCAGAATGACATGAG
261 CAGTTACAGAAGGACATGCAGGACCAATTGCAAGAACAATTGGCCAAGATGCAAAATGACATGAG
* * * *
105161197 AGGGCATATGCTAGAGGCTCAGAGGAATATGATGGCCGAAATGGCTCAACTATTGAGGGCCACTG
326 AGAGCATATGCTAGAGGCTCAGAGAAATATAATGGCCGAAATGGCTCAACTACTGAGGGCCACTG
105161262 ATAAGGGAAAGGCTC
391 ATAAGGGAAAGGCTC
105161277 CCATAGTAAT
Statistics
Matches: 391, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
421 391 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (421 bp):
AAAAGTGTATTTGTAATCTATTTTATGAAAAGATTTTTGTTCCTTAAATAACATTTTCTAAAATG
AAACTGAGTCAGAATCGACATTTTTTTGCATTCATGCATTTGCATTTCATTACATCATATGCATT
CAAGTTTATAGAAAGACCCTAATTAAGTTAAAATTATTAGGAAGAAAAAGAGTAAGAAATAGGAA
ATCTCGAAGCAACACATCCCTACGGTACATGCGCTAAGTCGAAGAATATGGACCAAAGATTTGAG
CAGTTACAGAAGGACATGCAGGACCAATTGCAAGAACAATTGGCCAAGATGCAAAATGACATGAG
AGAGCATATGCTAGAGGCTCAGAGAAATATAATGGCCGAAATGGCTCAACTACTGAGGGCCACTG
ATAAGGGAAAGGCTCTCATGGCAATTGCTGG
Found at i:105169397 original size:289 final size:289
Alignment explanation
Indices: 105169033--105169979 Score: 1606
Period size: 289 Copynumber: 3.3 Consensus size: 289
105169023 GATCGAAGAT
*
105169033 ATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
1 ATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
*
105169098 TGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGGGCAGACACATAGCAGATCT
66 TGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
105169163 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
*
105169228 AAATCGAGGACATAACAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
*
105169293 CTTGTGTTTACAAAGAACAAATCGAAACT
261 CTTGTGTTTACAAAGAACAAATCGAAACC
* * * *
105169322 ATAGCTGATTTGGTTTTCACGTGTTTACGTTGAAGCCAGTCTAGGATGATTTGGCATCTCTGTAT
1 ATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
* * * * * *
105169387 TGTTAGAGAACAAATCAAATTTTGGCGTCTCCATATTTGACGAAGGGAAGACACATAGCAAATCT
66 TGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
105169452 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
* * * *
105169517 AAATCGAGGACATAGCAGATTTGACTCTCAGATTTTCTCAAGCAAATCCAAGAAGATTTGGTGTT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
105169582 CTTGTGTTTACAAAGAACAAATCGAAACC
261 CTTGTGTTTACAAAGAACAAATCGAAACC
* * *
105169611 ATAGCTGATTTAGTTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGCAT
1 ATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
*
105169676 TGTCAGAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
66 TGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
*
105169741 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
*
105169806 AAATCGAGGACATAGCAGATTTAACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
* *
105169871 CTTGTGTTTACAAGGAACAAATTGAAACC
261 CTTGTGTTTACAAAGAACAAATCGAAACC
* ** ** *
105169900 ACAGCTGATTTGGCTTTCAAATGTTTATACTGAAGCAAATCTAAGATGATTTGGCATCTCTGTAT
1 ATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
105169965 TGTCAGAGAACAAAT
66 TGTCAGAGAACAAAT
105169980 TGAAGAGGCA
Statistics
Matches: 613, Mismatches: 45, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
289 613 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (289 bp):
ATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTAT
TGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCT
AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAAC
AAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAAATCCAAGATGATTTGGTATT
CTTGTGTTTACAAAGAACAAATCGAAACC
Found at i:105169924 original size:83 final size:83
Alignment explanation
Indices: 105169768--105169924 Score: 226
Period size: 83 Copynumber: 1.9 Consensus size: 83
105169758 ACTGAAGCAG
* *
105169768 ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTAACTC
1 ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGAACACAGCAGATTTAACTC
*
105169833 TCAGATGTTCTCAAACAA
66 TCAAATGTTCTCAAACAA
* * **
105169851 ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATTGA-AACCACAGCTGATTTGGCT
1 ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGAA-CACAGCAGATTTAACT
*
105169915 TTCAAATGTT
65 CTCAAATGTT
105169925 TATACTGAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
82 1 0.02
83 64 0.98
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (83 bp):
ATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGAACACAGCAGATTTAACTC
TCAAATGTTCTCAAACAA
Found at i:105170846 original size:29 final size:25
Alignment explanation
Indices: 105170806--105170859 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
105170796 TCCCGATTTT
*
105170806 TTTACAAAGAGAATAATATACACACAA
1 TTTACAAAGAG-A-AATATACAAACAA
105170833 TTTACGAATAGAGAAATATACAAACAA
1 TTTAC-AA-AGAGAAATATACAAACAA
105170860 ATTCAACAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 17 0.71
28 3 0.12
29 4 0.17
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.22
Consensus pattern (25 bp):
TTTACAAAGAGAAATATACAAACAA
Found at i:105171685 original size:22 final size:21
Alignment explanation
Indices: 105171660--105171837 Score: 71
Period size: 22 Copynumber: 8.1 Consensus size: 21
105171650 ATGTTGTATG
105171660 TATTTTCATTATATATATTATT
1 TATTTT-ATTATATATATTATT
* *
105171682 TATTTTACTATAT-T-TTATC
1 TATTTTATTATATATATTATT
*
105171701 TATTATATTATTATATATGT-TT
1 TATTTTATTA-TATATAT-TATT
* *
105171723 AATTTTTATTATATATTATATATA
1 TA-TTTTATTATATA-TAT-TATT
* *
105171747 TATTATT-TATATCTATATTATA
1 TATT-TTAT-TATATATATTATT
* * * *
105171769 TGTTTTAGTACATGTTATT-TT
1 TATTTTATTATAT-ATATTATT
105171790 TATATATTATATATTATATATTATT
1 TAT-T-TTAT-TA-TATATATTATT
* * *
105171815 CATATTATTACATAT-TTATT
1 TATTTTATTATATATATTATT
105171835 TAT
1 TAT
105171838 AAAGTTAGTA
Statistics
Matches: 115, Mismatches: 25, Indels: 34
0.66 0.14 0.20
Matches are distributed among these distances:
19 12 0.10
20 11 0.10
21 19 0.17
22 27 0.23
23 25 0.22
24 15 0.13
25 6 0.05
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTTTATTATATATATTATT
Found at i:105171728 original size:41 final size:41
Alignment explanation
Indices: 105171640--105171758 Score: 111
Period size: 41 Copynumber: 2.9 Consensus size: 41
105171630 TTATATTTGC
* * *
105171640 ATTTTACTATATGTTGTATGTATTTTCATTA-TATATATTATTT
1 ATTTTACTATAT-TT-TATATATTAT-ATTATTATATATTATTA
*
105171683 ATTTTACTATATTTTATCTATTATATTATTATATATGT-TTA
1 ATTTTACTATATTTTATATATTATATTATTATATAT-TATTA
* *
105171724 ATTTTTATTATATATTATATA-TATATTATT-TATAT
1 A-TTTTACTATATTTTATATATTATATTATTATATAT
105171759 CTATATTATA
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
40 9 0.13
41 27 0.40
42 19 0.28
43 12 0.18
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (41 bp):
ATTTTACTATATTTTATATATTATATTATTATATATTATTA
Found at i:105171766 original size:61 final size:61
Alignment explanation
Indices: 105171701--105171819 Score: 147
Period size: 61 Copynumber: 2.0 Consensus size: 61
105171691 ATATTTTATC
* *
105171701 TATTATAT-TATTA-TATATGTTTAATTTTTAT-TA-TATATTATATATATATTATTTATATCTA
1 TATTATATGTATTAGTACATG-TT-ATTTTTATATATTATA-TAT-TATATATTATTCATATCTA
*
105171762 TATTATATGTTTTAGTACATGTTATTTTTATATATTATATATTATATATTATTCATAT
1 TATTATATGTATTAGTACATGTTATTTTTATATATTATATATTATATATTATTCATAT
105171820 TATTACATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
61 31 0.61
62 11 0.22
63 9 0.18
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (61 bp):
TATTATATGTATTAGTACATGTTATTTTTATATATTATATATTATATATTATTCATATCTA
Found at i:105171830 original size:7 final size:7
Alignment explanation
Indices: 105171671--105171813 Score: 81
Period size: 7 Copynumber: 21.4 Consensus size: 7
105171661 ATTTTCATTA
105171671 TATATAT
1 TATATAT
*
105171678 TATTTAT
1 TATATAT
*
105171685 T-T-TAC
1 TATATAT
*
105171690 TATATTT
1 TATATAT
*
105171697 TATCTAT
1 TATATAT
105171704 TATATTAT
1 TATA-TAT
105171712 TATATAT
1 TATATAT
*
105171719 GTTTA-AT
1 -TATATAT
*
105171726 T-TTTAT
1 TATATAT
105171732 TATATAT
1 TATATAT
105171739 TATATA-
1 TATATAT
105171745 TATATTAT
1 TATA-TAT
105171753 T-TATA-
1 TATATAT
*
105171758 TCTATAT
1 TATATAT
*
105171765 TATATGT
1 TATATAT
*
105171772 T-T-TAG
1 TATATAT
* *
105171777 TACATGT
1 TATATAT
*
105171784 TAT-TTT
1 TATATAT
105171790 TATATAT
1 TATATAT
105171797 TATATAT
1 TATATAT
105171804 TATATAT
1 TATATAT
105171811 TAT
1 TAT
105171814 TCATATTATT
Statistics
Matches: 103, Mismatches: 20, Indels: 26
0.69 0.13 0.17
Matches are distributed among these distances:
5 7 0.07
6 22 0.21
7 63 0.61
8 11 0.11
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (7 bp):
TATATAT
Found at i:105171943 original size:23 final size:22
Alignment explanation
Indices: 105171912--105171977 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 22
105171902 TACCTATTAG
105171912 ATTATTATTATTTTATATATTCTT
1 ATTA-TATTATTTTATATATT-TT
* *
105171936 CTTATATTATATTATATATTTT
1 ATTATATTATTTTATATATTTT
*
105171958 ATTACATATATTTTAT-TATT
1 ATTATAT-TATTTTATATATT
105171978 ATATGATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 11 0.31
23 22 0.61
24 3 0.08
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTATATTATTTTATATATTTT
Found at i:105171966 original size:14 final size:14
Alignment explanation
Indices: 105171949--105171975 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
105171939 ATATTATATT
105171949 ATATATTTTATTAC
1 ATATATTTTATTAC
105171963 ATATATTTTATTA
1 ATATATTTTATTA
105171976 TTATATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (14 bp):
ATATATTTTATTAC
Found at i:105171976 original size:17 final size:17
Alignment explanation
Indices: 105171956--105172007 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
105171946 ATTATATATT
105171956 TTATTACATATATTTTA
1 TTATTACATATATTTTA
105171973 TTATT--ATATGATTTATA
1 TTATTACATAT-ATTT-TA
105171990 TTATTACATAT-TTTTA
1 TTATTACATATATTTTA
105172006 TT
1 TT
105172008 TGTAAATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
15 4 0.13
16 8 0.26
17 15 0.48
19 4 0.13
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (17 bp):
TTATTACATATATTTTA
Found at i:105171978 original size:34 final size:33
Alignment explanation
Indices: 105171940--105172007 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
105171930 ATTCTTCTTA
* *
105171940 TATTATATTATATATTTTATTACATATATTTTAT
1 TATTATATGATATATATTATTACATAT-TTTTAT
*
105171974 TATTATATGATTTATATTATTACATATTTTTAT
1 TATTATATGATATATATTATTACATATTTTTAT
105172007 T
1 T
105172008 TGTAAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (33 bp):
TATTATATGATATATATTATTACATATTTTTAT
Found at i:105171991 original size:14 final size:13
Alignment explanation
Indices: 105171938--105171993 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
105171928 ATATTCTTCT
105171938 TATA-TTATATTA
1 TATATTTATATTA
105171950 TATATTT-TATTACA
1 TATATTTATATT--A
105171964 TATATTTTATTATTA
1 TATA-TTTA-TATTA
105171979 TATGATTTATATTA
1 TAT-ATTTATATTA
105171993 T
1 T
105171994 TACATATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 8 0.22
13 2 0.05
14 11 0.30
15 11 0.30
16 1 0.03
17 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (13 bp):
TATATTTATATTA
Found at i:105174740 original size:26 final size:26
Alignment explanation
Indices: 105174694--105174746 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
105174684 TCAAACATGC
*
105174694 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGAGGT
* *
105174720 ATTTCGGT-AATTTATCTCCTAGAGGT
1 ATTTAGGTCAATTTAAC-CCTAGAGGT
105174746 A
1 A
105174747 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGAGGT
Found at i:105176262 original size:32 final size:32
Alignment explanation
Indices: 105176225--105176289 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
105176215 AATGCTTACC
105176225 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
105176257 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
105176289 A
1 A
105176290 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:105180196 original size:10 final size:10
Alignment explanation
Indices: 105180142--105180196 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
105180132 ATATAGATTT
105180142 ATTTTAT-AA
1 ATTTTATAAA
105180151 ATTTTA-AAA
1 ATTTTATAAA
*
105180160 AATTTATGAAAA
1 ATTTTAT--AAA
105180172 ATTTTAT--A
1 ATTTTATAAA
105180180 ATTTTATAAA
1 ATTTTATAAA
105180190 ATTTTAT
1 ATTTTAT
105180197 TTTCTTACCT
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
8 8 0.21
9 13 0.34
10 8 0.21
12 9 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
ATTTTATAAA
Found at i:105186963 original size:14 final size:16
Alignment explanation
Indices: 105186944--105186980 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
105186934 GATGTCTTTT
105186944 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
105186958 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
105186974 TTT-CATC
1 TTTGCATC
105186981 GCATTATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:105186980 original size:15 final size:15
Alignment explanation
Indices: 105186944--105186993 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
105186934 GATGTCTTTT
105186944 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
105186958 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
* *
105186974 TTT-CATCGCAT-TA
1 TTTGCATCTCATGCA
105186987 TTTGCAT
1 TTTGCAT
105186994 TCAAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 4 0.13
14 10 0.32
15 11 0.35
16 6 0.19
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:105194902 original size:175 final size:175
Alignment explanation
Indices: 105194600--105195153 Score: 912
Period size: 175 Copynumber: 3.2 Consensus size: 175
105194590 ATCTTCGACG
* *
105194600 AGGAGCAAATTGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
1 AGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
105194665 TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAAATCTAACCTTCAGATGTT
66 TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAAATCTAACCTTCAGATGTT
105194730 TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
131 TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
*
105194775 AGGAACAAATCGAAGACATAGTAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
1 AGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
* * ** *
105194840 TAACAGATCTGGCATCTCCATTTTGACAGAGAATAGATACATAGCAAATCTAACTTTCAGATGTT
66 TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAAATCTAACCTTCAGATGTT
* * *
105194905 TATACTGAAGCAAATCCAAGATGATTTGGCATTCTTGTATTTATA
131 TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
*
105194950 AGGAACAAATCAAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
1 AGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
*
105195015 TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTAACCTTCAGATGAT
66 TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAAATCTAACCTTCAGATG-T
* * *
105195080 TT-TACTGAAGCAGATACAAGATGATTTGGCATCCTTGTGTTCACA
130 TTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
* * * *
105195125 AGGATCAAATCGAAAACACAGTAGATTTG
1 AGGAACAAATCGAAGACATAGCAGATTTG
105195154 GTTTTCACAT
Statistics
Matches: 348, Mismatches: 30, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
175 345 0.99
176 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (175 bp):
AGGAACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGA
TAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAAATCTAACCTTCAGATGTT
TATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACA
Found at i:105194903 original size:88 final size:88
Alignment explanation
Indices: 105194615--105195077 Score: 319
Period size: 88 Copynumber: 5.3 Consensus size: 88
105194605 CAAATTGAAG
* * *
105194615 ACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
* * **
105194680 CTCCATTTCGACGGAGAGCAGAT
66 CTCCATTTTGACAGAGAATAGAT
* * * ** *
105194703 ACATAGCAAATCTAACCTTCAGATGTT-T-ATACTGAAGCAGATCCAAGAT----GATTTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
* * * * *
105194762 -T-CTTGTGTTTACAAGGAACAAATCGAAG
66 CTCCAT-T-TTGAC-A-G-A-GAATAG-AT
* * * *
105194790 ACATAGTAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
105194855 CTCCATTTTGACAGAGAATAGAT
66 CTCCATTTTGACAGAGAATAGAT
* * ** * *
105194878 ACATAGCAAATCTAACTTTCAGATGTT-T-ATACTGAAGCAAATCCAAGAT----GATTTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-
** * * *
105194937 TCTTGTATTTAT-A-AGGAACAAATCAAAG
65 TC-TCCATTT-TGACA-G-A-GAAT-AGAT
* * *
105194965 ACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
1 ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
* * **
105195030 CTCCATTTCGACGGAGAGCAGAT
66 CTCCATTTTGACAGAGAATAGAT
*
105195053 ACATAGCAGATCTAACCTTCAGATG
1 ACATAGCAGATCTAACTTTCAGATG
105195078 ATTTTACTGA
Statistics
Matches: 275, Mismatches: 70, Indels: 60
0.68 0.17 0.15
Matches are distributed among these distances:
80 2 0.01
81 2 0.01
82 20 0.07
83 3 0.01
84 8 0.03
85 3 0.01
86 40 0.15
87 49 0.18
88 70 0.25
89 40 0.15
90 2 0.01
91 8 0.03
92 3 0.01
93 21 0.08
94 2 0.01
95 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
ACATAGCAGATCTAACTTTCAGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCAT
CTCCATTTTGACAGAGAATAGAT
Found at i:105194984 original size:87 final size:87
Alignment explanation
Indices: 105194720--105195198 Score: 277
Period size: 87 Copynumber: 5.5 Consensus size: 87
105194710 AAATCTAACC
*
105194720 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTTACAAGGAACAAAT
* *
105194785 CGAAGACATAGTAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* * ** * * *
105194807 TTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCAT-T-TTGAC-A-
1 TTCAGATGTT-T-ATACTGAAGCAGATCCAAGAT----GATTTGGCAT-T-CTTGTATTTACAAG
* * * * * *
105194868 G-A-GAAT-AGATACATAGCAAATCTAACT
58 GAACAAATCAAAGACATAGCAGATTTGACT
* *
105194895 TTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATTCTTGTATTTATAAGGAACAAAT
1 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTTACAAGGAACAAAT
105194960 CAAAGACATAGCAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* * ** * ** *
105194982 TTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG
1 TTCAGATGTT-T-ATACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTATTTAC-AAGG
* * * * * * *
105195044 ---AGAGCAGATACATAGCAGATCTAACC
59 AACAAATCAAAGACATAGCAGATTTGACT
* * * * *
105195070 TTCAGATGATTT-TACTGAAGCAGATACAAGATGATTTGGCATCCTTGTGTTCACAAGGATCAAA
1 TTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTTACAAGGAACAAA
* * **
105195134 TCGAAA-ACACAGTAGATTTGGTT
65 TC-AAAGACATAGCAGATTTGACT
* * * * *
105195157 TTCACATGTTTATGCTGAAGCAAATCTAAGATGGTTTGGCAT
1 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCAT
105195199 CTCTGTGTTG
Statistics
Matches: 286, Mismatches: 75, Indels: 62
0.68 0.18 0.15
Matches are distributed among these distances:
80 2 0.01
81 2 0.01
82 20 0.07
83 2 0.01
84 7 0.02
85 2 0.01
86 39 0.14
87 80 0.28
88 54 0.19
89 40 0.14
90 1 0.00
91 9 0.03
92 3 0.01
93 21 0.07
94 2 0.01
95 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (87 bp):
TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTATTTACAAGGAACAAAT
CAAAGACATAGCAGATTTGACT
Found at i:105196551 original size:19 final size:19
Alignment explanation
Indices: 105196527--105196583 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
105196517 CTCTCGTATT
*
105196527 TTTTATATTTTTAATTTCA
1 TTTTATATTTTTAATTTAA
105196546 TTTTATTTATTTTCTAATTTAA
1 TTTTA--TATTTT-TAATTTAA
*
105196568 CTTTA-ATGTTTTAATT
1 TTTTATAT-TTTTAATT
105196584 CTGCTTCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 12 0.38
20 3 0.09
21 6 0.19
22 11 0.34
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTATATTTTTAATTTAA
Found at i:105196556 original size:21 final size:22
Alignment explanation
Indices: 105196524--105196565 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
105196514 GTCCTCTCGT
105196524 ATTTTTTATATTTT-TAATTTC
1 ATTTTTTATATTTTCTAATTTC
105196545 ATTTTATT-TATTTTCTAATTT
1 ATTTT-TTATATTTTCTAATTT
105196566 AACTTTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (22 bp):
ATTTTTTATATTTTCTAATTTC
Found at i:105196572 original size:22 final size:21
Alignment explanation
Indices: 105196532--105196572 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
105196522 GTATTTTTTA
* *
105196532 TATTTTTAATTTCATTTTATT
1 TATTTTTAATTTAACTTTATT
105196553 TATTTTCTAATTTAACTTTA
1 TATTTT-TAATTTAACTTTA
105196573 ATGTTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
TATTTTTAATTTAACTTTATT
Found at i:105198845 original size:30 final size:32
Alignment explanation
Indices: 105198809--105198867 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
105198799 TTAAAAAAAG
**
105198809 TCTTTTTAGTCCTC-CATTTA-ATTTTTTGCC
1 TCTTTTTAACCCTCACATTTACATTTTTTGCC
105198839 TCTTTTTAACCCTCACATTTACATTTTTT
1 TCTTTTTAACCCTCACATTTACATTTTTT
105198868 CTATCAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 12 0.48
31 6 0.24
32 7 0.28
ACGTcount: A:0.17, C:0.24, G:0.03, T:0.56
Consensus pattern (32 bp):
TCTTTTTAACCCTCACATTTACATTTTTTGCC
Found at i:105200988 original size:17 final size:17
Alignment explanation
Indices: 105200950--105200998 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
105200940 TCACATGTTA
105200950 TTTATTATATATTAATC
1 TTTATTATATATTAATC
* *
105200967 CTTATATATATATTAGT-
1 TTTAT-TATATATTAATC
105200984 TTTATTATTATATTA
1 TTTATTA-TATATTA
105200999 TTTAGTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.07
17 15 0.56
18 10 0.37
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (17 bp):
TTTATTATATATTAATC
Found at i:105201047 original size:26 final size:26
Alignment explanation
Indices: 105201011--105201066 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
105201001 TAGTAAATGC
105201011 TATTTTGAAATTAT-TATTAAGTATTA
1 TATTTTGAAATT-TGTATTAAGTATTA
* **
105201037 TATTTTTAAATTTGTATTATTTATTA
1 TATTTTGAAATTTGTATTAAGTATTA
105201063 TATT
1 TATT
105201067 ATTATTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (26 bp):
TATTTTGAAATTTGTATTAAGTATTA
Found at i:105202754 original size:78 final size:78
Alignment explanation
Indices: 105202527--105202756 Score: 318
Period size: 78 Copynumber: 2.9 Consensus size: 78
105202517 AAGTTACATC
* * * *
105202527 TCATGTAACAGTAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTACCCACTTTAAGTTATCAT
1 TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTACCCACCTTAAGTTACCAT
105202592 AAG-GAATCATATA
66 -AGTGAATCATATA
* * * * *
105202605 TCGTGTAACCGTAGCAAATCAAGATTACCTTTTCAGGTCAAACCCTACCCACCTTAGGTTACCAT
1 TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTACCCACCTTAAGTTACCAT
*
105202670 AATGAATCATATA
66 AGTGAATCATATA
* * * *
105202683 TCATGTAACCGTAGCGAATTAGGATTACCTTTTCAGGTCAAATCCTATCCGCCTTAAGTTACCGT
1 TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTACCCACCTTAAGTTACCAT
105202748 AGTGAATCA
66 AGTGAATCA
105202757 GGAATAAATC
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
77 1 0.01
78 130 0.99
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (78 bp):
TCATGTAACCGTAGCGAATCAGGATTACCTTTTCAGGTCAAATCCTACCCACCTTAAGTTACCAT
AGTGAATCATATA
Found at i:105202769 original size:40 final size:40
Alignment explanation
Indices: 105202721--105202858 Score: 177
Period size: 40 Copynumber: 3.5 Consensus size: 40
105202711 CTTTTCAGGT
* * *
105202721 CAAATCCTATCCGCCTTAAGTTACCGTAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * *
105202761 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
* * **
105202801 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
*
105202841 CAAATCCTATTCACTTTA
1 CAAATCCTATCCACTTTA
105202859 TATTCTCAAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (40 bp):
CAAATCCTATCCACTTTAAGTTACCATAGTGAATCAGGAA
Found at i:105204177 original size:30 final size:31
Alignment explanation
Indices: 105204108--105204177 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
105204098 CCACCCTTAA
* *
105204108 AATATTTACACTATTGACCATTCAACTTTTT
1 AATATTTACACTATTAACCACTCAACTTTTT
* *
105204139 CATATTTACACT-TTAACCCCTCAA-TTTTT
1 AATATTTACACTATTAACCACTCAACTTTTT
105204168 AAGTATTTAC
1 AA-TATTTAC
105204178 TCTTATGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 6 0.18
30 16 0.48
31 11 0.33
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.44
Consensus pattern (31 bp):
AATATTTACACTATTAACCACTCAACTTTTT
Found at i:105204880 original size:13 final size:13
Alignment explanation
Indices: 105204862--105204887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105204852 ATCAGATACT
105204862 TTAAACTTTTGTA
1 TTAAACTTTTGTA
105204875 TTAAACTTTTGTA
1 TTAAACTTTTGTA
105204888 ATCAGTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
TTAAACTTTTGTA
Found at i:105206469 original size:41 final size:39
Alignment explanation
Indices: 105206441--105206532 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 39
105206431 TGTTTGAAGT
*
105206441 AAAAAGGCCGCTAAAGATCGAGCATTAGCGGTGCTTTAA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGTGCTTTAA
* * *
105206480 AAAAACGCCGCTACAGATCGAGCATTAGCGGCG-TTTGCA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGTGCTTT-AA
105206519 AAAAACGCCG-TAAA
1 AAAAACGCCGCTAAA
105206533 AAGTAAAGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 6 0.13
39 41 0.87
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (39 bp):
AAAAACGCCGCTAAAGATCGAGCATTAGCGGTGCTTTAA
Found at i:105206713 original size:40 final size:41
Alignment explanation
Indices: 105206593--105206726 Score: 135
Period size: 41 Copynumber: 3.3 Consensus size: 41
105206583 GCGTTTTGCC
* * * **
105206593 AAAAGCGCCGCTAATGCTCAGATCTATAGCGGCGCTTTAAG
1 AAAAACGCCACTAATGCTCAAATCTATAGCGGCGCTTTTTG
* * *
105206634 AAAAACGTCGCTAATGCTCAAATCTATAGCGGAGCTTTTTG
1 AAAAACGCCACTAATGCTCAAATCTATAGCGGCGCTTTTTG
* * * * *
105206675 AAAAACGCCACTATTGCTC-TATTTATAGCGGCGTTTTTTC
1 AAAAACGCCACTAATGCTCAAATCTATAGCGGCGCTTTTTG
105206715 AAAAAGCGCCAC
1 AAAAA-CGCCAC
105206727 AAAAATATTT
Statistics
Matches: 78, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 21 0.27
41 57 0.73
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (41 bp):
AAAAACGCCACTAATGCTCAAATCTATAGCGGCGCTTTTTG
Found at i:105207021 original size:14 final size:14
Alignment explanation
Indices: 105206999--105207050 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
105206989 TTACTTATCA
*
105206999 TTATAGTTTAAGGT
1 TTATAGTTTAGGGT
*
105207013 TTATGGTTTAGGGT
1 TTATAGTTTAGGGT
*
105207027 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
105207041 TTATGGTTTA
1 TTATAGTTTA
105207051 TGATGAGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:105207090 original size:22 final size:23
Alignment explanation
Indices: 105207031--105207127 Score: 67
Period size: 22 Copynumber: 4.3 Consensus size: 23
105207021 TAGGGTATAT
* *
105207031 AGTTTAGGGTTTATGGTTTATGA
1 AGTTAAGGGTTTAAGGTTTATGA
***
105207054 TGAGTTAATATTTTAAGGTTTATGA
1 --AGTTAAGGGTTTAAGGTTTATGA
* *
105207079 A-TTATGGGTTTAGGGTTTA--A
1 AGTTAAGGGTTTAAGGTTTATGA
*
105207099 AGTTTAAGGGTTTATGGTTTATG-
1 AG-TTAAGGGTTTAAGGTTTATGA
105207122 AGTTAA
1 AGTTAA
105207128 TATCTCAAGG
Statistics
Matches: 56, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
20 2 0.04
22 33 0.59
23 3 0.05
25 18 0.32
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (23 bp):
AGTTAAGGGTTTAAGGTTTATGA
Found at i:105207121 original size:7 final size:7
Alignment explanation
Indices: 105206999--105207052 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
105206989 TTACTTATCA
*
105206999 TTATAGT
1 TTATGGT
*
105207006 TTAAGGT
1 TTATGGT
105207013 TTATGGT
1 TTATGGT
*
105207020 TTAGGGT
1 TTATGGT
* *
105207027 ATATAGT
1 TTATGGT
*
105207034 TTAGGGT
1 TTATGGT
105207041 TTATGGT
1 TTATGGT
105207048 TTATG
1 TTATG
105207053 ATGAGTTAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:105207244 original size:22 final size:22
Alignment explanation
Indices: 105207218--105207296 Score: 61
Period size: 22 Copynumber: 3.6 Consensus size: 22
105207208 GGTTTATAAT
*
105207218 TTAGGGGTTAAAGGT-TAAGGG
1 TTAGGGGTTAAAGGTCCAAGGG
* *
105207239 TCTAGGAGTTAAGGGTCCAAGGG
1 T-TAGGGGTTAAAGGTCCAAGGG
* * * * *
105207262 TTAAGGGTTAAGGGTACATGGT
1 TTAGGGGTTAAAGGTCCAAGGG
*
105207284 TTAGGGTTTAAAG
1 TTAGGGGTTAAAG
105207297 TTTAGGGGTT
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
21 1 0.02
22 38 0.84
23 6 0.13
ACGTcount: A:0.28, C:0.05, G:0.38, T:0.29
Consensus pattern (22 bp):
TTAGGGGTTAAAGGTCCAAGGG
Found at i:105207249 original size:15 final size:15
Alignment explanation
Indices: 105207230--105207269 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
105207220 AGGGGTTAAA
*
105207230 GGTTAAGGGT-CTAG
1 GGTTAAGGGTCCAAG
105207244 GAGTTAAGGGTCCAAG
1 G-GTTAAGGGTCCAAG
105207260 GGTTAAGGGT
1 GGTTAAGGGT
105207270 TAAGGGTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 1 0.04
15 18 0.78
16 4 0.17
ACGTcount: A:0.25, C:0.07, G:0.42, T:0.25
Consensus pattern (15 bp):
GGTTAAGGGTCCAAG
Found at i:105207269 original size:7 final size:7
Alignment explanation
Indices: 105207222--105207276 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
105207212 TATAATTTAG
105207222 GGGTTAA
1 GGGTTAA
*
105207229 AGGTTAA
1 GGGTTAA
105207236 GGGTCT-A
1 GGGT-TAA
105207243 GGAGTTAA
1 GG-GTTAA
*
105207251 GGGTCCAA
1 GGGT-TAA
105207259 GGGTTAA
1 GGGTTAA
105207266 GGGTTAA
1 GGGTTAA
105207273 GGGT
1 GGGT
105207277 ACATGGTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
7 28 0.70
8 12 0.30
ACGTcount: A:0.27, C:0.05, G:0.42, T:0.25
Consensus pattern (7 bp):
GGGTTAA
Found at i:105207514 original size:18 final size:17
Alignment explanation
Indices: 105207483--105207517 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
105207473 ATAAGTGATT
*
105207483 TTTTTTAATTTATATTA
1 TTTTTAAATTTATATTA
105207500 TTTTTAAATTATATATTA
1 TTTTTAAATT-TATATTA
105207518 AATAGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTAAATTTATATTA
Found at i:105208073 original size:10 final size:10
Alignment explanation
Indices: 105208058--105208090 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
105208048 TATAAGTTCT
105208058 TCTCTGCTCA
1 TCTCTGCTCA
105208068 TCTCTGCTCA
1 TCTCTGCTCA
105208078 --TCTGCTCA
1 TCTCTGCTCA
105208086 TCTCT
1 TCTCT
105208091 AAAATTCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.38
10 13 0.62
ACGTcount: A:0.09, C:0.39, G:0.09, T:0.42
Consensus pattern (10 bp):
TCTCTGCTCA
Found at i:105212826 original size:31 final size:33
Alignment explanation
Indices: 105212791--105212870 Score: 87
Period size: 31 Copynumber: 2.5 Consensus size: 33
105212781 TAGTTTTTAT
105212791 ATATTTTCATTTAAAACA-ATTT-TGAAA-ATAA
1 ATATTTTCATTTAAAACATATTTAT-AAATATAA
* *
105212822 ATATTTTTATTGAAAACATATTTATAAATATAA
1 ATATTTTCATTTAAAACATATTTATAAATATAA
*
105212855 AT-TTTTCTACTTAAAA
1 ATATTTTC-ATTTAAAA
105212871 TATTTGGGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 16 0.40
32 11 0.28
33 13 0.32
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (33 bp):
ATATTTTCATTTAAAACATATTTATAAATATAA
Found at i:105217221 original size:20 final size:20
Alignment explanation
Indices: 105217183--105217221 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
105217173 GGTCTCAGAA
* *
105217183 GAAGAAGCATGTAGTGAATT
1 GAAGAAGCAAGTAGAGAATT
*
105217203 GAAGAAGCAAGTGGAGAAT
1 GAAGAAGCAAGTAGAGAAT
105217222 GCTTGGAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.05, G:0.33, T:0.18
Consensus pattern (20 bp):
GAAGAAGCAAGTAGAGAATT
Found at i:105221144 original size:17 final size:17
Alignment explanation
Indices: 105221122--105221160 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
105221112 GGCCTTACAC
105221122 CAAAATTAAAAAA-AAAA
1 CAAAA-TAAAAAATAAAA
*
105221139 CAAAATAAAAAATATAA
1 CAAAATAAAAAATAAAA
105221156 CAAAA
1 CAAAA
105221161 CCAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (17 bp):
CAAAATAAAAAATAAAA
Found at i:105221149 original size:23 final size:23
Alignment explanation
Indices: 105221123--105221169 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
105221113 GCCTTACACC
*
105221123 AAAATTAAAAAAAAAACAAAATA
1 AAAAATAAAAAAAAAACAAAATA
* * *
105221146 AAAAATATAACAAAACCAAAATA
1 AAAAATAAAAAAAAAACAAAATA
105221169 A
1 A
105221170 TAAAGTCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.13
Consensus pattern (23 bp):
AAAAATAAAAAAAAAACAAAATA
Found at i:105221401 original size:11 final size:11
Alignment explanation
Indices: 105221385--105221416 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
105221375 TAACAGCAGT
105221385 GCAAATAGACA
1 GCAAATAGACA
105221396 GCAAATA-ACA
1 GCAAATAGACA
105221406 GCAAAT-GACA
1 GCAAATAGACA
105221416 G
1 G
105221417 TGATGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 13 0.65
11 7 0.35
ACGTcount: A:0.53, C:0.19, G:0.19, T:0.09
Consensus pattern (11 bp):
GCAAATAGACA
Found at i:105222478 original size:22 final size:21
Alignment explanation
Indices: 105222450--105222501 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
105222440 TTTTATTTAC
* *
105222450 TTATTTATGCTTTTATTCATTT
1 TTATTTAAGATTTTATT-ATTT
105222472 TTATTTAAGATTTTATTATTT
1 TTATTTAAGATTTTATTATTT
*
105222493 GTTTTTTAA
1 -TTATTTAA
105222502 AATTATCTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.23, C:0.04, G:0.06, T:0.67
Consensus pattern (21 bp):
TTATTTAAGATTTTATTATTT
Found at i:105222889 original size:15 final size:15
Alignment explanation
Indices: 105222871--105222899 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
105222861 TATACATATA
105222871 ATTTTTATTTTTTTT
1 ATTTTTATTTTTTTT
105222886 ATTTTTATTTTTTT
1 ATTTTTATTTTTTT
105222900 AAATCTACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (15 bp):
ATTTTTATTTTTTTT
Found at i:105222947 original size:27 final size:28
Alignment explanation
Indices: 105222893--105222949 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
105222883 TTTATTTTTA
* * *
105222893 TTTTTTTAAATCTACTTGTATATGTAAT
1 TTTTTTTAAATCTACTTGCAAATATAAT
105222921 TTTTTTTAAATCTA-TTGCAAATATAAT
1 TTTTTTTAAATCTACTTGCAAATATAAT
105222948 TT
1 TT
105222950 ATGATAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 12 0.46
28 14 0.54
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (28 bp):
TTTTTTTAAATCTACTTGCAAATATAAT
Found at i:105224781 original size:45 final size:45
Alignment explanation
Indices: 105224717--105224807 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
105224707 TAACTTTTGC
105224717 CAAATAATCTTTTATGGACAAGTGACCGTTCTTCTGGGAATACAA
1 CAAATAATCTTTTATGGACAAGTGACCGTTCTTCTGGGAATACAA
105224762 CAAATAATCTTTTATGGACAAGTGACCGTTCTTCTGGGAATACAA
1 CAAATAATCTTTTATGGACAAGTGACCGTTCTTCTGGGAATACAA
105224807 C
1 C
105224808 GCATGTCTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (45 bp):
CAAATAATCTTTTATGGACAAGTGACCGTTCTTCTGGGAATACAA
Found at i:105229178 original size:3 final size:3
Alignment explanation
Indices: 105229170--105229240 Score: 126
Period size: 3 Copynumber: 24.0 Consensus size: 3
105229160 AAATTTTGTT
*
105229170 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
105229218 TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
105229241 GAAAAATAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 63 0.97
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:105230738 original size:18 final size:18
Alignment explanation
Indices: 105230697--105230740 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
105230687 GGTTTAAATA
* *
105230697 ATTATTGAAAGACTAATG
1 ATTACTGAAAAACTAATG
*
105230715 -TTACTGAAAAACTGATG
1 ATTACTGAAAAACTAATG
105230732 ATTACTGAA
1 ATTACTGAA
105230741 TGATTATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (18 bp):
ATTACTGAAAAACTAATG
Found at i:105232968 original size:10 final size:10
Alignment explanation
Indices: 105232945--105233002 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
105232935 ATTTTAGCTT
* *
105232945 TTATCTTCAT
1 TTATCTTTAA
*
105232955 TTATTTTTAA
1 TTATCTTTAA
105232965 TTATCTTTAA
1 TTATCTTTAA
*
105232975 TTATCTTTAT
1 TTATCTTTAA
* *
105232985 TTATCTATAT
1 TTATCTTTAA
105232995 TTATCTTT
1 TTATCTTT
105233003 TAGAATTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 41 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:105232981 original size:30 final size:30
Alignment explanation
Indices: 105232945--105233002 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
105232935 ATTTTAGCTT
* *
105232945 TTATCTTCATTTATTTTTAATTATCTTTAA
1 TTATCTTCATTTATCTATAATTATCTTTAA
* *
105232975 TTATCTTTATTTATCTATATTTATCTTT
1 TTATCTTCATTTATCTATAATTATCTTT
105233003 TAGAATTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (30 bp):
TTATCTTCATTTATCTATAATTATCTTTAA
Found at i:105237271 original size:13 final size:13
Alignment explanation
Indices: 105237230--105237279 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
105237220 ATTTTTAAAT
105237230 AAAT-AATTAATA
1 AAATCAATTAATA
* *
105237242 AAATCAATTGATC
1 AAATCAATTAATA
105237255 AAATCAATTAATA
1 AAATCAATTAATA
*
105237268 AAATCTATTAAT
1 AAATCAATTAAT
105237280 TAAAGCAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 4 0.12
13 28 0.88
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (13 bp):
AAATCAATTAATA
Found at i:105241389 original size:26 final size:26
Alignment explanation
Indices: 105241353--105241509 Score: 106
Period size: 26 Copynumber: 5.9 Consensus size: 26
105241343 TAAAAGGGAA
105241353 TTTAAAATAAATAATATATAAGAAAT
1 TTTAAAATAAATAATATATAAGAAAT
* * *
105241379 TTTAAAGTAAATAACATATAA-AATAA
1 TTTAAAATAAATAATATATAAGAA-AT
* * *
105241405 TTT-AAATCAAGTAATACATATA-AAAC
1 TTTAAAAT-AAATAATATATA-AGAAAT
* * *
105241431 TTTAAAATAGATAATATACACGAAGA-
1 TTTAAAATAAATAATATATAAGAA-AT
* *
105241457 TTTAAAATAAATAATATGTAAAAATAAT
1 TTTAAAATAAATAATATAT-AAGA-AAT
* *
105241485 TTTGAAAACATATAATATATAAGAA
1 TTT-AAAATAAATAATATATAAGAA
105241510 GTATGTAAAA
Statistics
Matches: 99, Mismatches: 22, Indels: 19
0.71 0.16 0.14
Matches are distributed among these distances:
25 5 0.05
26 62 0.63
27 12 0.12
28 7 0.07
29 13 0.13
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (26 bp):
TTTAAAATAAATAATATATAAGAAAT
Found at i:105242258 original size:27 final size:25
Alignment explanation
Indices: 105242177--105242263 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
105242167 TTCATGAAAT
* * *
105242177 AAAATGATAAAAAAATAA--AAATA
1 AAAATAATAAAACAATAATGAATTA
* * *
105242200 AAAATAAATAAAAGAATGATGAATGA
1 AAAAT-AATAAAACAATAATGAATTA
105242226 ATAAATAATAAAACAATAATAGATATTA
1 A-AAATAATAAAACAATAAT-GA-ATTA
105242254 AAAATAATAA
1 AAAATAATAA
105242264 TAACCAAGGT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
23 5 0.10
24 10 0.20
26 16 0.32
27 15 0.30
28 4 0.08
ACGTcount: A:0.70, C:0.01, G:0.07, T:0.22
Consensus pattern (25 bp):
AAAATAATAAAACAATAATGAATTA
Found at i:105243652 original size:13 final size:13
Alignment explanation
Indices: 105243636--105243660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105243626 TGCTGGGCTT
105243636 GGTTTTGGGTCTC
1 GGTTTTGGGTCTC
105243649 GGTTTTGGGTCT
1 GGTTTTGGGTCT
105243661 TAATGTAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.40, T:0.48
Consensus pattern (13 bp):
GGTTTTGGGTCTC
Found at i:105244225 original size:36 final size:36
Alignment explanation
Indices: 105244185--105244256 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
105244175 TTTGAATCAA
105244185 GCTCAAATTTGTCACTATTTAGTAAAGTTATCCATG
1 GCTCAAATTTGTCACTATTTAGTAAAGTTATCCATG
105244221 GCTCAAATTTGTCACTATTTAGTAAAGTTATCCATG
1 GCTCAAATTTGTCACTATTTAGTAAAGTTATCCATG
105244257 CCCGATGAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (36 bp):
GCTCAAATTTGTCACTATTTAGTAAAGTTATCCATG
Found at i:105245463 original size:3 final size:3
Alignment explanation
Indices: 105245455--105245479 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
105245445 GAATTTCAAC
105245455 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
105245480 AACAAGACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:105246224 original size:19 final size:20
Alignment explanation
Indices: 105246183--105246225 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
105246173 TTCAATTGTA
*
105246183 AAAAAATTAAATTTAACTCT
1 AAAAAATTAAATTTAACTAT
105246203 AAAAAA-TAAATATTAA-TAT
1 AAAAAATTAAAT-TTAACTAT
105246222 AAAA
1 AAAA
105246226 GCATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAAAATTAAATTTAACTAT
Found at i:105247394 original size:66 final size:67
Alignment explanation
Indices: 105247320--105247447 Score: 195
Period size: 66 Copynumber: 1.9 Consensus size: 67
105247310 TAGGCGGGGT
* * * *
105247320 CAAGTCATTCTAAAGCAGTCATCATGTATCTTTTGAAAAATTTCATCC-GGGTTGCATATACCTA
1 CAAGTCATTCCAAAGCAATCATCATGTAACTTTTGAAAAATTTCATCCAGGATTGCATATACCTA
105247384 GC
66 GC
*
105247386 CAAGTCATTCCAAAGCAATCATCATGTAACTTTTGAATAATTTCATCCTAGGATTGCATATA
1 CAAGTCATTCCAAAGCAATCATCATGTAACTTTTGAAAAATTTCATCC-AGGATTGCATATA
105247448 ACTATACATG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 44 0.80
68 11 0.20
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (67 bp):
CAAGTCATTCCAAAGCAATCATCATGTAACTTTTGAAAAATTTCATCCAGGATTGCATATACCTA
GC
Found at i:105249055 original size:6 final size:6
Alignment explanation
Indices: 105249044--105249074 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
105249034 GACTGAGGGG
105249044 AAAACC AAAACC AAAACC AAAACC AAAACC A
1 AAAACC AAAACC AAAACC AAAACC AAAACC A
105249075 TTAACCATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:105250588 original size:22 final size:22
Alignment explanation
Indices: 105250560--105250602 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
105250550 AACCAAACGC
105250560 CATGTCGTTTCCATTCATTACT
1 CATGTCGTTTCCATTCATTACT
*
105250582 CATGTCGTTTCCATTCCTTAC
1 CATGTCGTTTCCATTCATTAC
105250603 ACTTATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.09, T:0.44
Consensus pattern (22 bp):
CATGTCGTTTCCATTCATTACT
Found at i:105252118 original size:5 final size:5
Alignment explanation
Indices: 105252108--105252138 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
105252098 CCATTCATTG
*
105252108 TACTA TACTA TACTG TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA T
105252139 CGCCATTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (5 bp):
TACTA
Found at i:105252126 original size:15 final size:15
Alignment explanation
Indices: 105252106--105252136 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105252096 ACCCATTCAT
105252106 TGTACTATACTATAC
1 TGTACTATACTATAC
105252121 TGTACTATACTATAC
1 TGTACTATACTATAC
105252136 T
1 T
105252137 ATCGCCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (15 bp):
TGTACTATACTATAC
Found at i:105258737 original size:46 final size:46
Alignment explanation
Indices: 105258577--105258748 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
105258567 TAACCCGCCC
* * * *
105258577 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
105258623 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
105258671 TCA-CGAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
105258715 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105258749 TGCTCAACTA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 12 0.11
46 62 0.59
47 12 0.11
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:105258740 original size:92 final size:93
Alignment explanation
Indices: 105258582--105258751 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
105258572 CGCCCTAAGT
* *
105258582 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105258647 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
105258675 GAACTCGGACTC-ACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105258739 CGAGTTCGGATGC
66 CGAGTTCGGATGC
105258752 TCAACTATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 60 0.83
93 12 0.17
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105259202 original size:30 final size:30
Alignment explanation
Indices: 105259168--105259227 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
105259158 ATTTAATACG
105259168 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
105259198 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
105259228 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:105271264 original size:18 final size:18
Alignment explanation
Indices: 105271241--105271275 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
105271231 AATACTCCAA
*
105271241 ATTTAATTATATTATTAT
1 ATTTAAATATATTATTAT
105271259 ATTTAAATATATTATTA
1 ATTTAAATATATTATTA
105271276 ACCCTAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTAAATATATTATTAT
Done.