Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 326 of 356
Found at i:105272201 original size:5 final size:6
Alignment explanation
Indices: 105272172--105272198 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
105272162 AGACTGAGGG
105272172 AAAACC AAAACC AAAACC AAAACC AAA
1 AAAACC AAAACC AAAACC AAAACC AAA
105272199 CCATTAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.30, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:105273687 original size:22 final size:22
Alignment explanation
Indices: 105273659--105273701 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
105273649 AACCAAACGC
105273659 CATGTCGTTTCCATTCATTACT
1 CATGTCGTTTCCATTCATTACT
*
105273681 CATGTCGTTTCCATTCCTTAC
1 CATGTCGTTTCCATTCATTAC
105273702 ACTTATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.09, T:0.44
Consensus pattern (22 bp):
CATGTCGTTTCCATTCATTACT
Found at i:105275184 original size:5 final size:5
Alignment explanation
Indices: 105275174--105275204 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
105275164 CCATTCATTG
*
105275174 TACTA TACTA TACTG TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA T
105275205 CGCCATTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (5 bp):
TACTA
Found at i:105275192 original size:15 final size:15
Alignment explanation
Indices: 105275172--105275202 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
105275162 ACCCATTCAT
105275172 TGTACTATACTATAC
1 TGTACTATACTATAC
105275187 TGTACTATACTATAC
1 TGTACTATACTATAC
105275202 T
1 T
105275203 ATCGCCATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (15 bp):
TGTACTATACTATAC
Found at i:105281815 original size:93 final size:93
Alignment explanation
Indices: 105281656--105281826 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
105281646 GCCCCTAAGT
* *
105281656 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105281721 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
105281749 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
105281814 CGAGTTCGGATGC
66 CGAGTTCGGATGC
105281827 TCAACTATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105281816 original size:46 final size:46
Alignment explanation
Indices: 105281651--105281823 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
105281641 AACCCGCCCC
* * * *
105281651 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
105281697 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
105281745 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
105281790 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105281824 TGCTCAACTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.55
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:105282277 original size:30 final size:30
Alignment explanation
Indices: 105282243--105282302 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
105282233 ATTTAATACG
105282243 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
105282273 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
105282303 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:105290568 original size:40 final size:40
Alignment explanation
Indices: 105290524--105290732 Score: 341
Period size: 40 Copynumber: 5.2 Consensus size: 40
105290514 CATTTGAATG
* * *
105290524 ATATCCGGGCTATA-TCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTA-AGACCCGAAGGCATTTGTGCGAGTTG-TT
105290564 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
105290604 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
105290644 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
105290684 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
105290724 ATATCCGGG
1 ATATCCGGG
105290733 TGCGAGTTGT
Statistics
Matches: 160, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.01
40 157 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:105290737 original size:20 final size:20
Alignment explanation
Indices: 105290712--105290752 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
105290702 GAAGGCATTT
105290712 GTGCGAGTTGTTATATCCGG
1 GTGCGAGTTGTTATATCCGG
105290732 GTGCGAGTTGTTATATCCGG
1 GTGCGAGTTGTTATATCCGG
105290752 G
1 G
105290753 CTAAGACCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.34
Consensus pattern (20 bp):
GTGCGAGTTGTTATATCCGG
Found at i:105290765 original size:60 final size:60
Alignment explanation
Indices: 105290672--105290793 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
105290662 GAAGGTATTT
105290672 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
105290732 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
105290792 GT
1 GT
105290794 TAAGACCCGA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (60 bp):
GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
Found at i:105290787 original size:40 final size:40
Alignment explanation
Indices: 105290732--105290844 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 40
105290722 TTATATCCGG
105290732 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
*
105290772 GTGCGAGTTGTTATATCCGGGTTAAGACCCGAAGGCATTT
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
* * * *
105290812 GTACTAATGGTTATATCC-GGCTAA-ATCCCGAAG
1 GTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAAG
105290845 ATACTTGGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.02
39 12 0.18
40 53 0.80
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (40 bp):
GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
Found at i:105290805 original size:100 final size:100
Alignment explanation
Indices: 105290632--105290831 Score: 346
Period size: 100 Copynumber: 2.0 Consensus size: 100
105290622 GAAGGCATTT
*
105290632 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTGTTATATCCGGGCTAA
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
* * *
105290697 GACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
66 GACCCGAAGGCATTTGTACGAATGGTTATATCCGG
*
105290732 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGTTAA
1 GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
*
105290797 GACCCGAAGGCATTTGTACTAATGGTTATATCCGG
66 GACCCGAAGGCATTTGTACGAATGGTTATATCCGG
105290832 CTAAATCCCG
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 94 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (100 bp):
GTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAA
GACCCGAAGGCATTTGTACGAATGGTTATATCCGG
Found at i:105292772 original size:93 final size:93
Alignment explanation
Indices: 105292665--105292835 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
105292655 GCCCCTAAGT
* *
105292665 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105292730 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
105292758 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
105292823 CGAGTTCGGATGC
66 CGAGTTCGGATGC
105292836 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:105292832 original size:46 final size:46
Alignment explanation
Indices: 105292660--105292832 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
105292650 AACCCGCCCC
* * *
105292660 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
105292706 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
105292754 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
105292799 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
105292833 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:105293287 original size:30 final size:29
Alignment explanation
Indices: 105293253--105293311 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
105293243 ATTTAATACG
105293253 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
105293283 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
105293312 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:105295674 original size:14 final size:15
Alignment explanation
Indices: 105295657--105295685 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105295647 AAACGTGATT
105295657 GCAAAAT-AAATTAA
1 GCAAAATAAAATTAA
105295671 GCAAAATAAAATTAA
1 GCAAAATAAAATTAA
105295686 ATGGATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (15 bp):
GCAAAATAAAATTAA
Found at i:105298016 original size:14 final size:15
Alignment explanation
Indices: 105297997--105298025 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105297987 CAGATTCCCT
105297997 TGAAAATA-AAGACA
1 TGAAAATAGAAGACA
105298011 TGAAAATAGAAGACA
1 TGAAAATAGAAGACA
105298026 AGTAAAGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.07, G:0.17, T:0.14
Consensus pattern (15 bp):
TGAAAATAGAAGACA
Found at i:105299049 original size:20 final size:20
Alignment explanation
Indices: 105299020--105299065 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
105299010 GCAATTAATT
105299020 AATT-TTTTAAAAT-TTAAAA
1 AATTATTTTAAAATATT-AAA
105299039 AATTATTTTAAAATATTAAA
1 AATTATTTTAAAATATTAAA
105299059 AATTATT
1 AATTATT
105299066 AAAATTACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.16
20 19 0.76
21 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AATTATTTTAAAATATTAAA
Found at i:105299065 original size:10 final size:10
Alignment explanation
Indices: 105299036--105299089 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 10
105299026 TTAAAATTTA
105299036 AAAAATTATTT
1 AAAAATTA-TT
*
105299047 TAAAA-TATT
1 AAAAATTATT
105299056 AAAAATTATT
1 AAAAATTATT
*
105299066 -AAAATTACT
1 AAAAATTATT
*
105299075 AAAAAATA-T
1 AAAAATTATT
105299084 AAAAAT
1 AAAAAT
105299090 ATATCTTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
9 20 0.56
10 12 0.33
11 4 0.11
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAAATTATT
Found at i:105299079 original size:20 final size:20
Alignment explanation
Indices: 105299020--105299081 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
105299010 GCAATTAATT
*
105299020 AATTTTTTAAAATT-TAAAA
1 AATTATTTAAAATTATAAAA
*
105299039 AATTATTTTAAAA-TATTAAA
1 AATTA-TTTAAAATTATAAAA
105299059 AATTA-TTAAAATTACTAAAA
1 AATTATTTAAAATTA-TAAAA
105299079 AAT
1 AAT
105299082 ATAAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
18 6 0.17
19 7 0.19
20 23 0.64
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTATTTAAAATTATAAAA
Found at i:105299122 original size:19 final size:20
Alignment explanation
Indices: 105299085--105299127 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
105299075 AAAAAATATA
105299085 AAAATATATCTTTATTTTTT
1 AAAATATATCTTTATTTTTT
105299105 AAAATAT-T-TTTAATTTTTT
1 AAAATATATCTTT-ATTTTTT
105299124 AAAA
1 AAAA
105299128 ATTAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.14
19 12 0.55
20 7 0.32
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AAAATATATCTTTATTTTTT
Found at i:105299128 original size:20 final size:21
Alignment explanation
Indices: 105299083--105299129 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
105299073 CTAAAAAATA
105299083 TAAAAATATATCTTTATTTTT
1 TAAAAATATATCTTTATTTTT
105299104 T-AAAATAT-T-TTTAATTTTT
1 TAAAAATATATCTTT-ATTTTT
105299123 TAAAAAT
1 TAAAAAT
105299130 TAATTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 8 0.33
20 12 0.50
21 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TAAAAATATATCTTTATTTTT
Found at i:105299136 original size:19 final size:19
Alignment explanation
Indices: 105299098--105299137 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
105299088 ATATATCTTT
*
105299098 ATTTTTTAAAATATTTTTA
1 ATTTTTTAAAATATTATTA
105299117 ATTTTTTAAAA-ATTAATTA
1 ATTTTTTAAAATATT-ATTA
105299136 AT
1 AT
105299138 AACTAATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTTAAAATATTATTA
Found at i:105301954 original size:12 final size:12
Alignment explanation
Indices: 105301929--105301967 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
105301919 TTTTAACCGG
* *
105301929 AAAAATAGACAA
1 AAAAAAAGAAAA
105301941 AAAAAAAGAAAA
1 AAAAAAAGAAAA
105301953 AAAAAAAGAAAA
1 AAAAAAAGAAAA
105301965 AAA
1 AAA
105301968 GGGAACTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.03
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:105305138 original size:21 final size:20
Alignment explanation
Indices: 105305105--105305147 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
105305095 CTATTTTGTA
*
105305105 TTTTTGCACAATTTTATAATT
1 TTTTTGCACAATTATAT-ATT
* *
105305126 TTTTTGTATAATTATATATT
1 TTTTTGCACAATTATATATT
105305146 TT
1 TT
105305148 AATAATTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTTGCACAATTATATATT
Found at i:105305385 original size:34 final size:34
Alignment explanation
Indices: 105305346--105305414 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
105305336 AATAAACGCA
105305346 TTATCTATCCAAACCTACTATTATATTTTTATAT
1 TTATCTATCCAAACCTACTATTATATTTTTATAT
*
105305380 TTATCTATCCAACCCTACTATTATATTTTTATAT
1 TTATCTATCCAAACCTACTATTATATTTTTATAT
105305414 T
1 T
105305415 AATAGATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (34 bp):
TTATCTATCCAAACCTACTATTATATTTTTATAT
Found at i:105306180 original size:20 final size:19
Alignment explanation
Indices: 105306132--105306183 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
105306122 GATCATATAC
105306132 TAAAAAATATT-TAAAAATA
1 TAAAAAA-ATTATAAAAATA
*
105306151 TAAAAGAATTATAAAAATA
1 TAAAAAAATTATAAAAATA
105306170 TAAATAAAATTATA
1 TAAA-AAAATTATA
105306184 TTCTTTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.10
19 18 0.62
20 8 0.28
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
TAAAAAAATTATAAAAATA
Found at i:105306305 original size:38 final size:39
Alignment explanation
Indices: 105306238--105306320 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 39
105306228 AAAAAGTAAT
* * * *
105306238 AAAAATTATAAAAAATTATTAGAATTTGTAAAATATTGTA
1 AAAAATTAT-AAAAATCATTAAAAATTGTAAAAGATTGTA
*
105306278 GAAAATTAT-AAAATCATTAAAAATTGTAAAAGATTGTA
1 AAAAATTATAAAAATCATTAAAAATTGTAAAAGATTGTA
105306316 AAAAA
1 AAAAA
105306321 ATTAAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 29 0.78
40 8 0.22
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (39 bp):
AAAAATTATAAAAATCATTAAAAATTGTAAAAGATTGTA
Found at i:105306324 original size:28 final size:29
Alignment explanation
Indices: 105306266--105306326 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
105306256 TTAGAATTTG
**
105306266 TAAAATATTGTAGAAAATTATAAAATCAT
1 TAAAATATTGTAGAAAATTATAAAAAAAT
*
105306295 TAAAA-ATTGTA-AAAGATTGTAAAAAAAT
1 TAAAATATTGTAGAAA-ATTATAAAAAAAT
105306323 TAAA
1 TAAA
105306327 TTTTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.11
28 20 0.71
29 5 0.18
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (29 bp):
TAAAATATTGTAGAAAATTATAAAAAAAT
Found at i:105307069 original size:18 final size:18
Alignment explanation
Indices: 105307036--105307070 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
105307026 TTAGTATTGA
* *
105307036 TTTTAAAAATTCAAAAAC
1 TTTTAAAAAATAAAAAAC
105307054 TTTTAAAAAATAAAAAA
1 TTTTAAAAAATAAAAAA
105307071 TATTCAAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TTTTAAAAAATAAAAAAC
Found at i:105321624 original size:19 final size:19
Alignment explanation
Indices: 105321596--105321633 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
105321586 CATCAAATTT
105321596 GAGATGTCCCAACAAGAAA
1 GAGATGTCCCAACAAGAAA
*
105321615 GAGATTTCCCAACAAGAAA
1 GAGATGTCCCAACAAGAAA
105321634 AAACAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.21, G:0.18, T:0.13
Consensus pattern (19 bp):
GAGATGTCCCAACAAGAAA
Found at i:105328597 original size:58 final size:58
Alignment explanation
Indices: 105328507--105328624 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
105328497 TTATTTAAAA
*
105328507 CCGAACAGTATATACACATTTAGATTCGTGTTGAACAAAAGGGAGATATATTACAGCT
1 CCGAACAGTATATAAACATTTAGATTCGTGTTGAACAAAAGGGAGATATATTACAGCT
105328565 CCGAACAGTATATAAACATTTAGATTCGTGTTGAACAAAAGGGAGATATATTACAGCT
1 CCGAACAGTATATAAACATTTAGATTCGTGTTGAACAAAAGGGAGATATATTACAGCT
105328623 CC
1 CC
105328625 AAGCTTCTTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (58 bp):
CCGAACAGTATATAAACATTTAGATTCGTGTTGAACAAAAGGGAGATATATTACAGCT
Found at i:105345872 original size:14 final size:15
Alignment explanation
Indices: 105345848--105345876 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
105345838 ATATTTTCTT
105345848 GAAATAAATTAAAAA
1 GAAATAAATTAAAAA
105345863 GAAA-AAATTAAAAA
1 GAAATAAATTAAAAA
105345877 TAGCAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
GAAATAAATTAAAAA
Found at i:105345901 original size:17 final size:15
Alignment explanation
Indices: 105345848--105345902 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 15
105345838 ATATTTTCTT
105345848 GAAATAAATT-AAAAA
1 GAAA-AAATTAAAAAA
105345863 GAAAAAATTAAAAATA
1 GAAAAAATTAAAAA-A
105345879 GCAAAAAATTCACAAAAA
1 G-AAAAAATT-A-AAAAA
105345897 GAAAAA
1 GAAAAA
105345903 TACAAAGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.14
15 8 0.23
16 2 0.06
17 13 0.37
18 3 0.09
19 4 0.11
ACGTcount: A:0.73, C:0.05, G:0.07, T:0.15
Consensus pattern (15 bp):
GAAAAAATTAAAAAA
Found at i:105348067 original size:214 final size:213
Alignment explanation
Indices: 105347699--105348237 Score: 805
Period size: 214 Copynumber: 2.5 Consensus size: 213
105347689 AAGCTATCAA
*
105347699 GAAGGCAAACAACGTTTTCACAGTTGTTCAATACCAAATTT-TCAAGACCAATAAGATTGTCAAT
1 GAAGGCAAACAAAGTTTTCACAGTTGTTCAATACC-AATTTCTCAAGACCAATAAGATTGTCAAT
* * * **
105347763 TGAAGATGGTAATTCCTTCACATCCGTTCCGTTTAAATTAAGTTCCCTCAACTGCTCCATGATGT
65 TGAGGATGGTAATTCCTTCACAGCCGTTCCGCTTAAATTAAGTTCCCTCAACCACTCCATGATGT
* * * * *
105347828 CCAAGATTTCTGGTAAAGCCTCCAATCTTGAGCAACCTTTAACTTCGAATTTTTCAAGAGATTTC
130 CCAAGATTTCTGGGAAAGCCTCCAATCTTAAGCAACCTTCAACGTCAAATTTTTCAAGAGATTTC
*
105347893 AATTTATAAAAGTTGGTAG
195 AATTTATAAAAGCTGGTAG
* ** *
105347912 GAAGGCAAACAAAGTTTTCACAATTACTCAATACCAATTTCTCAAGACCAAATAAGATTGTCACT
1 GAAGGCAAACAAAGTTTTCACAGTTGTTCAATACCAATTTCTCAAGACC-AATAAGATTGTCAAT
105347977 TGAGGATGGTAATTCCTTCACAGCCGTTCCGCTTAAATTAAGTTCCCTCAACCACTCCATGATGT
65 TGAGGATGGTAATTCCTTCACAGCCGTTCCGCTTAAATTAAGTTCCCTCAACCACTCCATGATGT
105348042 CCAAGATTTCTGGGAAAGCCTCCAATCTTAAGCAACCTTCAACGTCAAATTTTTCAAGAGATTTC
130 CCAAGATTTCTGGGAAAGCCTCCAATCTTAAGCAACCTTCAACGTCAAATTTTTCAAGAGATTTC
* *
105348107 AATTTATAAAGGCTGTTAG
195 AATTTATAAAAGCTGGTAG
* * *
105348126 GAAGG-TAACAAGGTTTTCACAGTTGTTCAATACCAATTTCTCAAGACCAATAAGATTGCCAATT
1 GAAGGCAAACAAAGTTTTCACAGTTGTTCAATACCAATTTCTCAAGACCAATAAGATTGTCAATT
* * **
105348190 G-GTGATGGTAATTCCTTCAAAGTCGTTTTGCTTAAATTAAGTTCCCTC
66 GAG-GATGGTAATTCCTTCACAGCCGTTCCGCTTAAATTAAGTTCCCTC
105348238 TGTTGTTCCA
Statistics
Matches: 294, Mismatches: 29, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
211 1 0.00
212 61 0.21
213 77 0.26
214 155 0.53
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (213 bp):
GAAGGCAAACAAAGTTTTCACAGTTGTTCAATACCAATTTCTCAAGACCAATAAGATTGTCAATT
GAGGATGGTAATTCCTTCACAGCCGTTCCGCTTAAATTAAGTTCCCTCAACCACTCCATGATGTC
CAAGATTTCTGGGAAAGCCTCCAATCTTAAGCAACCTTCAACGTCAAATTTTTCAAGAGATTTCA
ATTTATAAAAGCTGGTAG
Found at i:105357237 original size:13 final size:13
Alignment explanation
Indices: 105357219--105357250 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
105357209 TTTTATTTCA
105357219 TTTATTTCTTTAG
1 TTTATTTCTTTAG
*
105357232 TTTATTTCTTTAT
1 TTTATTTCTTTAG
105357245 TTTATT
1 TTTATT
105357251 ATTAAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (13 bp):
TTTATTTCTTTAG
Found at i:105359890 original size:31 final size:31
Alignment explanation
Indices: 105359852--105359915 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
105359842 AAGAAGCAAA
105359852 TGAAGAATGAAAGAAAAATATTGAAACAAGT
1 TGAAGAATGAAAGAAAAATATTGAAACAAGT
105359883 TGAAGAATGAAAGAAAAATATTGAAACAAGT
1 TGAAGAATGAAAGAAAAATATTGAAACAAGT
105359914 TG
1 TG
105359916 TAACCGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.56, C:0.03, G:0.20, T:0.20
Consensus pattern (31 bp):
TGAAGAATGAAAGAAAAATATTGAAACAAGT
Found at i:105361891 original size:14 final size:14
Alignment explanation
Indices: 105361872--105361902 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
105361862 TATTTTAAGT
105361872 TATATATATATGTA
1 TATATATATATGTA
105361886 TATATATATATGTA
1 TATATATATATGTA
105361900 TAT
1 TAT
105361903 TTTATTTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (14 bp):
TATATATATATGTA
Found at i:105362611 original size:15 final size:15
Alignment explanation
Indices: 105362591--105362624 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
105362581 TTTACTTTTG
* *
105362591 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
105362606 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
105362621 TTAT
1 TTAT
105362625 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:105369563 original size:104 final size:105
Alignment explanation
Indices: 105369379--105369570 Score: 280
Period size: 104 Copynumber: 1.8 Consensus size: 105
105369369 TCTGTACTCT
* *
105369379 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAGCAAATTTTCATCTT
1 AGCAAAATTTGCTATCTTG---AATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTT
105369444 ATCCGTTGTGATAATCTTTTTCATCTTATCCCTTTCGTATCTC
63 ATCCGTTGTGATAATCTTTTTCATCTTATCCCTTTCGTATCTC
** * *
105369487 AGCAAAATTTGCTATCTTG-ATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTTGTC
1 AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
105369551 CAGTT-TGATAATCTTTTTCA
66 C-GTTGTGATAATCTTTTTCA
105369571 AGTATTTTTC
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
104 55 0.71
105 3 0.04
108 19 0.25
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.46
Consensus pattern (105 bp):
AGCAAAATTTGCTATCTTGAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATCTTATC
CGTTGTGATAATCTTTTTCATCTTATCCCTTTCGTATCTC
Found at i:105370124 original size:44 final size:45
Alignment explanation
Indices: 105370020--105370693 Score: 633
Period size: 44 Copynumber: 15.3 Consensus size: 45
105370010 AAGTCATTAA
* * * * *
105370020 AGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
105370065 AGCAGATATTGTCTTCATGTATTGG-CGTGAAGAAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370109 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
105370153 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370197 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGAAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370241 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
105370285 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370329 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGAAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370373 AGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
105370417 -GCAGATCTTGTCTT-CTCATATTGGTGGCGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCT-ATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
105370461 ATCAGATCTTGTCTTCATGTATTAG-CGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * *
105370505 AGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTAGACCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* *
105370549 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
105370593 AGCA-AGTCTTATCTTCCTATATTGATAG-GAAGTGGATCCAAGAT
1 AGCAGA-TCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
105370637 A-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
105370681 AGCAGATCTTGTC
1 AGCAGATCTTGTC
105370694 CCTGTATTTG
Statistics
Matches: 497, Mismatches: 114, Indels: 36
0.77 0.18 0.06
Matches are distributed among these distances:
42 2 0.00
43 88 0.18
44 309 0.62
45 97 0.20
46 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
Found at i:105370258 original size:132 final size:132
Alignment explanation
Indices: 105370021--105370564 Score: 935
Period size: 132 Copynumber: 4.1 Consensus size: 132
105370011 AGTCATTAAA
*
105370021 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATATTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
105370086 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370151 AT
131 AT
105370153 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
105370218 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370283 AT
131 AT
105370285 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
105370350 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370415 AT
131 AT
* * *
105370417 GCAGATCTTGTCTTCTCATATTGGTGGCGAAGTAGATCGAAGAAATCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
* * * * * * * * * * *
105370482 TTAGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTAGACCGCAG
66 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
*
105370547 AAA
131 -AT
105370550 GCAGATCTTGTCTTC
1 GCAGATCTTGTCTTC
105370565 ATGTATTGGC
Statistics
Matches: 395, Mismatches: 16, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
132 379 0.96
133 16 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
AT
Found at i:105370548 original size:220 final size:219
Alignment explanation
Indices: 105370143--105370693 Score: 700
Period size: 220 Copynumber: 2.5 Consensus size: 219
105370133 GTAGGAAGTG
* * * * * *
105370143 GATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTT
1 GATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTT
* * * ** * * *
105370207 GTCTTCAT-GTATTGG-CGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGG
64 GTCTTC-TCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGTA-G
* * * *
105370270 AAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGA
127 AAGTAGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGACCGCAGAAAGCAGA
105370335 TCTTGTCTTCATGTATTGGCGTGAAGAA
192 TCTTGTCTTCATGTATTGGCGTGAAGAA
* *
105370363 GATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGT
1 GATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGT
* * *
105370428 CTTCTCATATTGGTGGCGAAGTAGATCGAAGAAATCAGATCTTGTCTTCATGTATTAGCGT-GAA
66 CTTCTCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATT-G-GTAGAA
* * *
105370492 GTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAG-GAAGTAGACCGCAGAAAGCAGAT
129 GTAGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGACCGCAGAAAGCAGAT
*
105370556 CTTGTCTTCATGTATTGGCGTGAAGTA
193 CTTGTCTTCATGTATTGGCGTGAAGAA
* * *
105370583 GATCGAAGATAGCA-AGTCTTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGATCTTG
1 GATCGAAGATAGCAGA-TCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTG
* *
105370647 TCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
65 TCTTCTCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
105370694 CCTGTATTTG
Statistics
Matches: 288, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
218 1 0.00
219 23 0.08
220 215 0.75
221 47 0.16
222 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (219 bp):
GATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGT
CTTCTCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATATATTGGTAGAAGT
AGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTAGCGAAGTAGACCGCAGAAAGCAGATCTT
GTCTTCATGTATTGGCGTGAAGAA
Found at i:105370625 original size:132 final size:132
Alignment explanation
Indices: 105370021--105370693 Score: 904
Period size: 132 Copynumber: 5.1 Consensus size: 132
105370011 AGTCATTAAA
* *
105370021 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATATTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
*
105370086 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370151 AT
131 AT
*
105370153 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
*
105370218 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370283 AT
131 AT
*
105370285 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
*
105370350 TTGGCGTGAAGAAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
66 TTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
105370415 AT
131 AT
* *
105370417 GCAGATCTTGTCTTCTCATATTGGTGGCGAAGTAGATCGAAGAAATCAGATCTTGTCTTCATGTA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
* * * * * * * * * *
105370482 TTAGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTATATTGGTAGGAAGTAGACCGCAG
66 TTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
*
105370547 AAA
131 -AT
*** * * * * * *
105370550 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA-AGTCTTATCTTCCTAT
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGA-TCTTGTCTTCATGT
** ** * * * * * * *
105370613 ATTGATAG-GAAGTGGATCCAAGATA-CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCG
65 ATTG-GCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCG
*
105370676 AAGAAA
128 AAG-AT
105370682 GCAGATCTTGTC
1 GCAGATCTTGTC
105370694 CCTGTATTTG
Statistics
Matches: 499, Mismatches: 38, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
131 22 0.04
132 454 0.91
133 23 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
TTGGCGTGAAGAAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAG
AT
Found at i:105372513 original size:12 final size:12
Alignment explanation
Indices: 105372498--105372526 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
105372488 TATTTTAAGT
105372498 TATATATATATG
1 TATATATATATG
105372510 TATATATATATG
1 TATATATATATG
105372522 TATAT
1 TATAT
105372527 TTTATTTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATATATATATG
Found at i:105373228 original size:15 final size:15
Alignment explanation
Indices: 105373208--105373241 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
105373198 TTTACTTTTG
* *
105373208 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
105373223 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
105373238 TTAT
1 TTAT
105373242 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:105377736 original size:5 final size:5
Alignment explanation
Indices: 105377726--105377787 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
105377716 TAAAAACGCC
105377726 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
105377776 ATATT ATATT AT
1 ATATT ATATT AT
105377788 CCCATAATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:105381090 original size:26 final size:26
Alignment explanation
Indices: 105381054--105381137 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
105381044 TGATACAAAT
105381054 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105381080 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
105381106 TGATAATAGGTTAGGTTAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
105381132 TGATAA
1 TGATAA
105381138 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:105383898 original size:19 final size:19
Alignment explanation
Indices: 105383874--105383912 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
105383864 AAGTAAAAAT
105383874 AAATAT-TGTACAATAATAA
1 AAATATATGTACAAT-ATAA
*
105383893 AAATATATGTATAATATAA
1 AAATATATGTACAATATAA
105383912 A
1 A
105383913 CAAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
AAATATATGTACAATATAA
Found at i:105384240 original size:3 final size:3
Alignment explanation
Indices: 105384227--105384451 Score: 55
Period size: 3 Copynumber: 73.3 Consensus size: 3
105384217 TTAAAACCTT
* * *
105384227 TAA TGA TAA TAA TATA TAGA TAA AAA TATA TAA TAA TACA -AA -AA TGACT
1 TAA TAA TAA TAA TA-A TA-A TAA TAA TA-A TAA TAA TA-A TAA TAA T-A-A
* *
105384276 TAA TAA TATA TAA -AA TAA TTA TAA T-A TAA T-A TAA -AA TCA T-A
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
105384317 TATG TAA AAA TCA TATA TAA TATA TAA TAA -ACA T-A TAA T-A TAA TAA
1 TA-A TAA TAA TAA TA-A TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA
* * ** *
105384363 TAA TATA TAAA TAA TGA T-G TAA -AA TAA TAA TAA CTTG TGAA AAA TAA
1 TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA -TAA T-AA TAA TAA
*
105384410 CATA TAA TAAA TAA TAA TAA T-A TAAA TAA TATA TAA -AA TAA T
1 TA-A TAA T-AA TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA T
105384452 TTTATAATAT
Statistics
Matches: 164, Mismatches: 27, Indels: 62
0.65 0.11 0.25
Matches are distributed among these distances:
2 25 0.15
3 99 0.60
4 38 0.23
5 2 0.01
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:105384375 original size:11 final size:11
Alignment explanation
Indices: 105384277--105384395 Score: 62
Period size: 11 Copynumber: 11.1 Consensus size: 11
105384267 AAAATGACTT
105384277 AATAATATATAA
1 AATAATATAT-A
105384289 AATAAT-TATA
1 AATAATATATA
105384299 ATATAATATA-A
1 A-ATAATATATA
*
105384310 AATCATATATGTA
1 AAT-A-ATATATA
105384323 AA-AATCATAT-
1 AATAAT-ATATA
105384333 -ATAATATAT-
1 AATAATATATA
*
105384342 AATAA-ACAT-
1 AATAATATATA
105384351 -ATAATATA-A
1 AATAATATATA
105384360 TAATAATATATA
1 -AATAATATATA
*
105384372 AATAATGATGTAA
1 AATAAT-ATAT-A
105384385 AATAATA-ATA
1 AATAATATATA
105384395 A
1 A
105384396 CTTGTGAAAA
Statistics
Matches: 86, Mismatches: 6, Indels: 32
0.69 0.05 0.26
Matches are distributed among these distances:
8 4 0.05
9 10 0.12
10 15 0.17
11 30 0.35
12 17 0.20
13 10 0.12
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (11 bp):
AATAATATATA
Found at i:105384441 original size:27 final size:27
Alignment explanation
Indices: 105384349--105384477 Score: 70
Period size: 27 Copynumber: 4.5 Consensus size: 27
105384339 TATAATAAAC
105384349 ATATAATATAATAATAAT-ATATAAATA
1 ATATAATA-AATAATAATAATATAAATA
* *
105384376 ATGAT-GTAAAATAATAATAACTTGTGAAAAATAA
1 AT-ATAAT-AAATAATAATAA----T-ATAAAT-A
105384410 CATATAATAAATAATAATAATATAAATA
1 -ATATAATAAATAATAATAATATAAATA
*
105384438 ATAT-ATAAAATAATTTTATAATAT--ATA
1 ATATAAT-AAATAA--TAATAATATAAATA
*
105384465 ATATAAAAAATAA
1 ATATAATAAATAA
105384478 GGTTAAAAAT
Statistics
Matches: 81, Mismatches: 6, Indels: 30
0.69 0.05 0.26
Matches are distributed among these distances:
26 2 0.02
27 35 0.43
28 6 0.07
29 13 0.16
30 1 0.01
32 1 0.01
33 5 0.06
34 15 0.19
35 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (27 bp):
ATATAATAAATAATAATAATATAAATA
Found at i:105384449 original size:9 final size:10
Alignment explanation
Indices: 105384235--105384467 Score: 95
Period size: 10 Copynumber: 23.6 Consensus size: 10
105384225 TTTAATGATA
*
105384235 ATAATATATAG
1 ATAATA-ATAT
*
105384246 ATAAAAATAT
1 ATAATAATAT
*
105384256 ATAATAATAC
1 ATAATAATAT
105384266 A-AA-AATGACT
1 ATAATAAT-A-T
105384276 -TAATAATAT
1 ATAATAATAT
105384285 ATAA-AATA-
1 ATAATAATAT
*
105384293 ATTATAATAT
1 ATAATAATAT
105384303 A-ATATAA-A-
1 ATA-ATAATAT
*
105384311 ATCAT-ATAT
1 ATAATAATAT
* *
105384320 GTAAAAATCAT
1 ATAATAAT-AT
105384331 AT-ATAATAT
1 ATAATAATAT
*
105384340 ATAATAA-AC
1 ATAATAATAT
105384349 AT-ATAATAT
1 ATAATAATAT
105384358 AATAATAATAT
1 -ATAATAATAT
105384369 ATAAATAATGAT
1 AT-AATAAT-AT
*
105384381 GTAA-AATA-
1 ATAATAATAT
*
105384389 ATAATAACTTGT
1 ATAATAA--TAT
* *
105384401 GAAAAATAACAT
1 --ATAATAATAT
105384413 ATAATAA-AT
1 ATAATAATAT
105384422 AATAATAATAT
1 -ATAATAATAT
105384433 A-AATAATAT
1 ATAATAATAT
105384442 ATAA-AATAAT
1 ATAATAAT-AT
* *
105384452 TTTATAATAT
1 ATAATAATAT
105384462 ATAATA
1 ATAATA
105384468 TAAAAAATAA
Statistics
Matches: 166, Mismatches: 26, Indels: 61
0.66 0.10 0.24
Matches are distributed among these distances:
7 1 0.01
8 17 0.10
9 40 0.24
10 66 0.40
11 32 0.19
12 4 0.02
14 6 0.04
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (10 bp):
ATAATAATAT
Found at i:105384486 original size:80 final size:79
Alignment explanation
Indices: 105384277--105384516 Score: 199
Period size: 80 Copynumber: 3.0 Consensus size: 79
105384267 AAAATGACTT
* * *
105384277 AATAATATATAAAATAA-TTAT-A-ATATAATATAAAATCATATATG-TAAAAATCATATATAAT
1 AATAATATATAAAATAATTTATAATATATAATATAAAA-AATA-ATGTTAAAAATAACATATAAT
*
105384338 ATATAATAAACATATA
64 AAATAATAAACATATA
* ** * * * *
105384354 ATATAATA-ATAATAT-ATAAATAATGATGTAAAAT-AATAATAACTTGTGAAAAATAACATATA
1 A-ATAATATATAAAATAATTTATAAT-ATATAATATAAAAAATAA--TGTTAAAAATAACATATA
105384416 ATAAATAATAATA-ATATA
62 ATAAATAATAA-ACATATA
* *
105384434 AATAATATATAAAATAATTTTATAATATATAATATAAAAAATAAGGTTAAAAATAAAACAAATAA
1 AATAATATATAAAATAA-TTTATAATATATAATATAAAAAATAATGTTAAAAAT--AACATATAA
*
105384499 TAATATAATAAATATATA
63 TAA-ATAATAAACATATA
105384517 GGGTTAAATT
Statistics
Matches: 126, Mismatches: 20, Indels: 28
0.72 0.11 0.16
Matches are distributed among these distances:
76 1 0.01
77 10 0.08
78 10 0.08
79 10 0.08
80 49 0.39
81 9 0.07
82 25 0.20
83 12 0.10
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (79 bp):
AATAATATATAAAATAATTTATAATATATAATATAAAAAATAATGTTAAAAATAACATATAATAA
ATAATAAACATATA
Found at i:105384512 original size:12 final size:12
Alignment explanation
Indices: 105384411--105384516 Score: 51
Period size: 12 Copynumber: 8.4 Consensus size: 12
105384401 GAAAAATAAC
105384411 ATATAATAAATA
1 ATATAATAAATA
105384423 ATAATAATATAAATA
1 AT-AT-A-ATAAATA
105384438 ATAT-ATAAAATA
1 ATATAAT-AAATA
*
105384450 ATTTTATAATATATA
1 A---TATAATAAATA
*
105384465 ATATAAAAAATA
1 ATATAATAAATA
105384477 AGGT-TAA-AAATA
1 A--TATAATAAATA
* *
105384489 AAACAA-ATAATA
1 ATATAATA-AATA
105384501 ATATAATAAAT-
1 ATATAATAAATA
105384512 ATATA
1 ATATA
105384517 GGGTTAAATT
Statistics
Matches: 74, Mismatches: 7, Indels: 27
0.69 0.06 0.25
Matches are distributed among these distances:
11 10 0.14
12 35 0.47
13 6 0.08
14 4 0.05
15 17 0.23
16 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (12 bp):
ATATAATAAATA
Found at i:105384626 original size:22 final size:22
Alignment explanation
Indices: 105384598--105384642 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
105384588 TAAAACGTGC
*
105384598 GTAAACAATAGGGACTCATTGG
1 GTAAACAAGAGGGACTCATTGG
105384620 GTAAACAAGAGGGACTCATTGG
1 GTAAACAAGAGGGACTCATTGG
105384642 G
1 G
105384643 CAAATTGCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (22 bp):
GTAAACAAGAGGGACTCATTGG
Found at i:105395402 original size:13 final size:13
Alignment explanation
Indices: 105395384--105395439 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
105395374 TAGATTTTTC
105395384 CTAAATATTATCA
1 CTAAATATTATCA
105395397 CTAAATATTATCA
1 CTAAATATTATCA
* *
105395410 TTAAATA--AT-T
1 CTAAATATTATCA
105395420 CTAAATATTATCA
1 CTAAATATTATCA
105395433 CTAAATA
1 CTAAATA
105395440 ATTCAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 6 0.17
11 2 0.06
12 2 0.06
13 26 0.72
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:105395425 original size:23 final size:23
Alignment explanation
Indices: 105395397--105395448 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
105395387 AATATTATCA
*
105395397 CTAAATATTATCATTAAATAATT
1 CTAAATATTATCACTAAATAATT
105395420 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
105395443 CAAAAT
1 CTAAAT
105395449 TTAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:105396211 original size:32 final size:28
Alignment explanation
Indices: 105396169--105396238 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 28
105396159 GTATCTGACA
* *
105396169 ATTTAAATATAAATTATTTGATTTATATTTT
1 ATTTATATATAAA-TATTTG-TTTAT-TTAT
105396200 ATTTTATATATAAATATTTGTTTATTTAT
1 A-TTTATATATAAATATTTGTTTATTTAT
105396229 ATTTATATAT
1 ATTTATATAT
105396239 TTTGTTCACT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 9 0.25
29 4 0.11
30 5 0.14
31 7 0.19
32 11 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (28 bp):
ATTTATATATAAATATTTGTTTATTTAT
Found at i:105396218 original size:20 final size:21
Alignment explanation
Indices: 105396193--105396241 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
105396183 TATTTGATTT
105396193 ATATTTTAT-TTTATATATAA
1 ATATTTTATATTTATATATAA
* * *
105396213 ATATTTGTTTATTTATATTTAT
1 ATATTT-TATATTTATATATAA
105396235 ATATTTT
1 ATATTTT
105396242 GTTCACTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
ATATTTTATATTTATATATAA
Found at i:105396226 original size:28 final size:31
Alignment explanation
Indices: 105396169--105396238 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 31
105396159 GTATCTGACA
*
105396169 ATTTAAATATAAATTATTTGATTTATATTT-T
1 ATTTATATATAAATTATTTGA-TTATATTTAT
105396200 ATTTTATATATAAA-TATTTG-TT-TATTTAT
1 A-TTTATATATAAATTATTTGATTATATTTAT
105396229 ATTTATATAT
1 ATTTATATAT
105396239 TTTGTTCACT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
28 14 0.39
29 4 0.11
31 7 0.19
32 11 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (31 bp):
ATTTATATATAAATTATTTGATTATATTTAT
Found at i:105396230 original size:22 final size:23
Alignment explanation
Indices: 105396197--105396240 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
105396187 TGATTTATAT
105396197 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
105396220 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
105396241 TGTTCACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:105396239 original size:14 final size:14
Alignment explanation
Indices: 105396189--105396240 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
105396179 AAATTATTTG
105396189 ATTTATAT-TTTAT
1 ATTTATATATTTAT
**
105396202 -TTTATATATAAAT
1 ATTTATATATTTAT
* *
105396215 ATTTGTTTATTTAT
1 ATTTATATATTTAT
105396229 ATTTATATATTT
1 ATTTATATATTT
105396241 TGTTCACTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 19 0.66
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
ATTTATATATTTAT
Found at i:105396513 original size:86 final size:85
Alignment explanation
Indices: 105396410--105396764 Score: 412
Period size: 86 Copynumber: 4.1 Consensus size: 85
105396400 GGGATTTATT
* * *
105396410 ATTTATTTCCGCCGTTCAACAGATTTTATTTCATTTTTTATTTTATTTCCAAATGAGAATTAAAG
1 ATTTATTCCCGTCGTTCAACAGATTTTATTCCATTTTTTATTTTATTTCCAAATGAGAATTAAA-
* *
105396475 TTAAAAAAAATCTCTTTCGGG
65 TTAAATAAAATCTGTTTCGGG
* * *
105396496 ATTTATTCCCGTCGTTCAA-AGGATTTTATTCCATTTTTTATTTTATTTCCAAAACGAGTATTGA
1 ATTTATTCCCGTCGTTCAACA-GATTTTATTCCATTTTTTATTTTATTTCC-AAATGAGAATTAA
* *
105396560 ATTAAATAAAATCTATTTTGGG
64 ATTAAATAAAATCTGTTTCGGG
** * * *
105396582 ATTTATTCTTGACGTTCAACAGATTTTATTCCATTTTTTATTTTGTTATCAAAATGAGAAATTAA
1 ATTTATTCCCGTCGTTCAACAGATTTTATTCCATTTTTTATTTTATT-TCCAAATGAG-AATT-A
**
105396647 AATTAAATAAAATCTGTTTCAAG
63 AATTAAATAAAATCTGTTTCGGG
* * *
105396670 ATTTATTCTCGTCATTTAACAAGATTTTATT---TTATTTTATTTTATTTCCAAATGAGAATTAA
1 ATTTATTCCCGTCGTTCAAC-AGATTTTATTCCATT-TTTTATTTTATTTCCAAATGAGAATTAA
* *
105396732 ATTAAATTAAATATGTTTCGGG
64 ATTAAATAAAATCTGTTTCGGG
105396754 ATTTATTCCCG
1 ATTTATTCCCG
105396765 CTGTTTAATA
Statistics
Matches: 229, Mismatches: 32, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
84 30 0.13
85 5 0.02
86 121 0.53
87 28 0.12
88 35 0.15
89 10 0.04
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (85 bp):
ATTTATTCCCGTCGTTCAACAGATTTTATTCCATTTTTTATTTTATTTCCAAATGAGAATTAAAT
TAAATAAAATCTGTTTCGGG
Found at i:105399981 original size:20 final size:20
Alignment explanation
Indices: 105399953--105400001 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
105399943 ATATATCCTG
* * *
105399953 ATTTTATTTTATTCTAATCA
1 ATTTGATTTGATTCTAACCA
*
105399973 ATTTGATTTGATTTTAACCA
1 ATTTGATTTGATTCTAACCA
*
105399993 AATTGATTT
1 ATTTGATTT
105400002 AATTGCCCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (20 bp):
ATTTGATTTGATTCTAACCA
Found at i:105400472 original size:20 final size:20
Alignment explanation
Indices: 105400447--105400484 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
105400437 TATTCAATTT
105400447 ATATTT-TATTTTATATATAA
1 ATATTTATATTTT-TATATAA
105400467 ATATTTATATTTTTATAT
1 ATATTTATATTTTTATAT
105400485 TTTGTTCGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATATTTATATTTTTATATAA
Found at i:105403444 original size:46 final size:43
Alignment explanation
Indices: 105403383--105403474 Score: 121
Period size: 46 Copynumber: 2.1 Consensus size: 43
105403373 TTACTATTAT
* * *
105403383 TTTTATTTTATTACCATTATTATTATCATACTTGTATTTATATTTA
1 TTTTATTCTAATACCATTATTATTAT--TACTTCTA-TTATATTTA
*
105403429 TTTTATTCTAATACCATTATTATTATTACTTCTATTATTTTTA
1 TTTTATTCTAATACCATTATTATTATTACTTCTATTATATTTA
105403472 TTT
1 TTT
105403475 CTAACTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
43 11 0.26
44 7 0.17
46 24 0.57
ACGTcount: A:0.27, C:0.10, G:0.01, T:0.62
Consensus pattern (43 bp):
TTTTATTCTAATACCATTATTATTATTACTTCTATTATATTTA
Found at i:105403452 original size:3 final size:3
Alignment explanation
Indices: 105403444--105403682 Score: 61
Period size: 3 Copynumber: 80.0 Consensus size: 3
105403434 TTCTAATACC
* * *
105403444 ATT ATT ATT ATT ACTT -CT ATT ATT TTT ATT -TCT AACT ATT ATT ATTT
1 ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT AT-T -ATT ATT ATT A-TT
** * * * *
105403491 ATAT ATAT ATT ATT ATT CGT ATT GTT GTT ATT ATT ACT ATT ATT AAT
1 AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * *
105403538 A-T ACTT ATT ATT GCT ATT ATT TTT ATT -TT ATT -TT TTT ACTT -TT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* * * * *
105403581 ATT AAT A-T ACTT -GT ATTT ATT ATT ATC A-T CTT ATT -TT ATT ACT
1 ATT ATT ATT A-TT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
105403624 ATT ATC ATT GTT GTA ATT ACT ATT ACT AGT ATT ATT ATT -TT -TT AACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
105403671 ATT ATT ATT ATT
1 ATT ATT ATT ATT
105403683 GGTAGTAGTA
Statistics
Matches: 171, Mismatches: 44, Indels: 42
0.67 0.17 0.16
Matches are distributed among these distances:
2 19 0.11
3 131 0.77
4 21 0.12
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:105403574 original size:14 final size:15
Alignment explanation
Indices: 105403552--105403584 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
105403542 TTATTATTGC
105403552 TATTATTTTTA-TTT
1 TATTATTTTTACTTT
105403566 TATT-TTTTTACTTT
1 TATTATTTTTACTTT
105403580 TATTA
1 TATTA
105403585 ATATACTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTATTTTTACTTT
Found at i:105403605 original size:49 final size:50
Alignment explanation
Indices: 105403524--105403620 Score: 117
Period size: 49 Copynumber: 1.9 Consensus size: 50
105403514 GTTGTTATTA
* *
105403524 TTACTATTATTAATATACTTATTATTGCTATTAT-TTTTATTTTATTTTT
1 TTACTATTATTAATATACTTATTATTACTATTATATCTTATTTTATTTTT
* * *
105403573 TTACTTTTATTAATATACTT-GTATTTATTATTATCATCTTATTTTATT
1 TTACTATTATTAATATACTTATTA-TTACTATTAT-ATCTTATTTTATT
105403621 ACTATTATCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.05
49 27 0.68
51 11 0.28
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (50 bp):
TTACTATTATTAATATACTTATTATTACTATTATATCTTATTTTATTTTT
Found at i:105417323 original size:10 final size:10
Alignment explanation
Indices: 105417308--105417358 Score: 75
Period size: 10 Copynumber: 5.0 Consensus size: 10
105417298 TTAAACTCTA
105417308 AAAGATAAAT
1 AAAGATAAAT
105417318 AAAGATAAAT
1 AAAGATAAAT
*
105417328 AAAACATAAAT
1 -AAAGATAAAT
*
105417339 AAGGATAAAT
1 AAAGATAAAT
105417349 AAAGATAAAT
1 AAAGATAAAT
105417359 GCTAAAATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
10 27 0.75
11 9 0.25
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:105417330 original size:21 final size:21
Alignment explanation
Indices: 105417306--105417358 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
105417296 AATTAAACTC
105417306 TAAAAGATAAATAAAGATAAA
1 TAAAAGATAAATAAAGATAAA
* *
105417327 TAAAACATAAATAAGGATAAA
1 TAAAAGATAAATAAAGATAAA
105417348 T-AAAGATAAAT
1 TAAAAGATAAAT
105417359 GCTAAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (21 bp):
TAAAAGATAAATAAAGATAAA
Found at i:105422310 original size:133 final size:133
Alignment explanation
Indices: 105422072--105422343 Score: 544
Period size: 133 Copynumber: 2.0 Consensus size: 133
105422062 TTAACTCAAA
105422072 CTTCTTATGATTCTCTCATGTATAAAATATACTGTCCAGTGAGTCCATTGATATATTATTTTCAA
1 CTTCTTATGATTCTCTCATGTATAAAATATACTGTCCAGTGAGTCCATTGATATATTATTTTCAA
105422137 AGAAAAAAGTTGTAATATGAGTATGTTGTAGATGGTGAAATTTGAATTATACATCTATTTTTGAA
66 AGAAAAAAGTTGTAATATGAGTATGTTGTAGATGGTGAAATTTGAATTATACATCTATTTTTGAA
105422202 TGT
131 TGT
105422205 CTTCTTATGATTCTCTCATGTATAAAATATACTGTCCAGTGAGTCCATTGATATATTATTTTCAA
1 CTTCTTATGATTCTCTCATGTATAAAATATACTGTCCAGTGAGTCCATTGATATATTATTTTCAA
105422270 AGAAAAAAGTTGTAATATGAGTATGTTGTAGATGGTGAAATTTGAATTATACATCTATTTTTGAA
66 AGAAAAAAGTTGTAATATGAGTATGTTGTAGATGGTGAAATTTGAATTATACATCTATTTTTGAA
105422335 TGT
131 TGT
105422338 CTTCTT
1 CTTCTT
105422344 TTAAAAGTGA
Statistics
Matches: 139, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 139 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (133 bp):
CTTCTTATGATTCTCTCATGTATAAAATATACTGTCCAGTGAGTCCATTGATATATTATTTTCAA
AGAAAAAAGTTGTAATATGAGTATGTTGTAGATGGTGAAATTTGAATTATACATCTATTTTTGAA
TGT
Found at i:105425112 original size:213 final size:213
Alignment explanation
Indices: 105424804--105426007 Score: 1374
Period size: 213 Copynumber: 5.7 Consensus size: 213
105424794 ATCTATCTAG
* *
105424804 TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGATATATCTTGATTTAAGCGGAACGGCTTTGA
1 TTTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGATATCTTGATTTAAGCGGAACGGCTTTGA
* * * * *
105424869 AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTGTGAAC--TTGAGTTTGGACAACTGTA
66 AGGAATTACCATCCTCAATTGACAATCTTATTGGTC-T-TAAACATTTGAGATTGAACAACTGTG
* * * * *
105424932 AAAATCTTGTTTGCCTTCCTAACAGTTTTTATAAATTGAAATCTCTTAAGATATTCACAATTCAA
129 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTCACAATTCAA
105424997 GGTTGCTCGAGATTGGAGAT
194 GGTTGCTCGAGATTGGAGAT
* **
105425017 ATTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGATATCTTGATTTAAGTAGAACTGG-TTTG
1 TTTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGATATCTTGATTTAAGCGGAAC-GGCTTTG
* * * *
105425081 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTGAGACTGAGCAACTGTGA
65 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAACATTTGAGATTGAACAACTGTGA
* ** *
105425146 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTCAGTTTTTCTATC--TTGA
130 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTC-A-CAATTCA
* **
105425209 AGGTTGTTTAAGATTGGAGAT
193 AGGTTGCTCGAGATTGGAGAT
* * * * * *
105425230 TTTTCCAAAAACCTTGGACACCATGGAGAGGTTG-G-TGCATCTTGATTTAAGCGGAATGTCTTT
1 TTTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGAT--ATCTTGATTTAAGCGGAACGGCTTT
* * * * * *
105425293 GAAGGAATTACCATTCTCAAATGATAATCTTATTGGTCTTATATATTTAAGATTGAACAACTGTG
64 GAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAACATTTGAGATTGAACAACTGTG
* * * * * * **
105425358 AAAACCTTGTTTGTCTTCCTGACAACTTTTATAAATTGAAATATCTTATCTTTTTCTCTCTTCAA
129 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTCACAATTCAA
**
105425423 AATTGCTCGAGATTGGAGAT
194 GGTTGCTCGAGATTGGAGAT
* * * * *
105425443 TTTTCCAGAAATCTTAGAGGCCATGGAGTGGTTGAGGGT-GCTTGATTTAAGTGGAACGGCTTTG
1 TTTTCCAGAAATCTTAGAGACCATGGAGAGGTTGA-GATATCTTGATTTAAGCGGAACGGCTTTG
* * * * ** * * * * *
105425507 AAGAAACTACCATCCTCAATTGTCAATTTTATTTTTCTTATAGATTTGAGACTGAGCGACTGTGA
65 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAACATTTGAGATTGAACAACTGTGA
* * * *
105425572 AAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTT-ACCTTTTTA-AATCTTCA
130 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTCACAA--TTCA
**
105425635 AAATTGCTCGAGATTGGAGAT
193 AGGTTGCTCGAGATTGGAGAT
** *
105425656 TTTTCCAGAAATCTTAGAGACCATGGA-ATGGTTGAGGGAGCTTGATTTAAGCGGAACGGCTTTG
1 TTTTCCAGAAATCTTAGAGACCATGGAGA-GGTTGAGATATCTTGATTTAAGCGGAACGGCTTTG
* **
105425720 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTGAGGATTTGAGATTGAACAACTGTGA
65 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAACATTTGAGATTGAACAACTGTGA
* * ** * *
105425785 AAACCTTGTTTGCCTTCCTGATAGCCTTTATAAATTGAAATCTCTTAACAGATTCACACTTGAAG
130 AAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTCACAATTCAAG
*
105425850 GTTGCTTGAGATTGGAGAT
195 GTTGCTCGAGATTGGAGAT
* * * * *
105425869 TTTTCCAGAAATCTTAGAAACCATGGA-ATGGTTGAGCTTTCTTAATTTAAGCAGAACGGCTTTG
1 TTTTCCAGAAATCTTAGAGACCATGGAGA-GGTTGAGATATCTTGATTTAAGCGGAACGGCTTTG
* *
105425933 AAGGAATTACCATTCTCAATTGACAATCTTATTGGTCTTCAAA-ACTTGAGATTGAACAACTGTG
65 AAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTT-AAACATTTGAGATTGAACAACTGTG
*
105425997 AGAA-CTTGTTT
129 AAAACCTTGTTT
105426008 ACTGCCATTG
Statistics
Matches: 843, Mismatches: 128, Indels: 41
0.83 0.13 0.04
Matches are distributed among these distances:
211 5 0.01
212 17 0.02
213 808 0.96
214 9 0.01
215 3 0.00
216 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (213 bp):
TTTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGATATCTTGATTTAAGCGGAACGGCTTTGA
AGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTAAACATTTGAGATTGAACAACTGTGAA
AACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATTTTCACAATTCAAGG
TTGCTCGAGATTGGAGAT
Found at i:105425558 original size:426 final size:425
Alignment explanation
Indices: 105424804--105426007 Score: 1522
Period size: 426 Copynumber: 2.8 Consensus size: 425
105424794 ATCTATCTAG
* * * * * **
105424804 TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGATATATCTTGATTTAAGCGGAACGGCTTTGA
1 TTTTCCAAAAACCTTAGACACCATGGAGAGGTTGGTGCATCTTGATTTAAGCGGAACGGCTTTGA
* * * * *
105424869 AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTGTGAACTTGAGTTTGGACAACTGTAAA
66 AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTAT-AATTTGAGATTGAACAACTGTGAA
* * * * *
105424934 AATCTTGTTTGCCTTCCTAACAGTTTTTATAAATTGAAATCTCTTAAGATATTCACAATTCAAGG
130 AACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATATTCACACTTCAAGG
* *
105424999 TTGCTCGAGATTGGAGATATTTCCAGAAATCTTAGAGACCATGGAGAGGTTGA-GATATCTTGAT
195 TTGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGACCATGGAGTGGTTGAGGAT-TCTTGAT
105425063 TTAAGTAGAACTGG-TTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAAT
259 TTAAGTAGAAC-GGCTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAAT
* *
105425127 TGAGACTGAGCAACTGTGAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTT
323 TGAGACTGAGCAACTGTGAAAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTT
* ** * ** * *
105425192 -CAGTTTTTCTATCTTGAAGGTTGTTTAAGATTGGAGAT
388 AC-CTTTTTAAATCTTCAAAATTGCTCAAGATTGGAGAT
* * *
105425230 TTTTCCAAAAACCTTGGACACCATGGAGAGGTTGGTGCATCTTGATTTAAGCGGAATGTCTTTGA
1 TTTTCCAAAAACCTTAGACACCATGGAGAGGTTGGTGCATCTTGATTTAAGCGGAACGGCTTTGA
* * *
105425295 AGGAATTACCATTCTCAAATGATAATCTTATTGGTCTTATATATTTAAGATTGAACAACTGTGAA
66 AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTATA-ATTTGAGATTGAACAACTGTGAA
* * * * * * * * **
105425360 AACCTTGTTTGTCTTCCTGACAACTTTTATAAATTGAAATATCTTATCTTTTTCTCTCTTCAAAA
130 AACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATATTCACACTTCAAGG
* * *
105425425 TTGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGGCCATGGAGTGGTTGAGGGTGCTTGATT
195 TTGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGACCATGGAGTGGTTGAGGATTCTTGATT
* * * * * ** * * *
105425490 TAAGTGGAACGGCTTTGAAGAAACTACCATCCTCAATTGTCAATTTTATTTTTCTTATAGATTTG
260 TAAGTAGAACGGCTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTG
*
105425555 AGACTGAGCGACTGTGAAAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTTAC
325 AGACTGAGCAACTGTGAAAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTTAC
*
105425620 CTTTTTAAATCTTCAAAATTGCTCGAGATTGGAGAT
390 CTTTTTAAATCTTCAAAATTGCTCAAGATTGGAGAT
* * * * *
105425656 TTTTCCAGAAATCTTAGAGACCATGGA-ATGGTTGAG-GGAGCTTGATTTAAGCGGAACGGCTTT
1 TTTTCCAAAAACCTTAGACACCATGGAGA-GGTTG-GTGCATCTTGATTTAAGCGGAACGGCTTT
* **
105425719 GAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTGAGGATTTGAGATTGAACAACTGTG
64 GAAGGAATTACCATCCTCAATTGATAATCTTATTGGTCTT-ATAATTTGAGATTGAACAACTGTG
* * * *
105425784 AAAACCTTGTTTGCCTTCCTGATAGCCTTTATAAATTGAAATCTCTTAACAGATTCACACTTGAA
128 AAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATATTCACACTTCAA
* * * ** *
105425849 GGTTGCTTGAGATTGGAGATTTTTCCAGAAATCTTAGAAACCATGGAATGGTTGAGCTTTCTTAA
193 GGTTGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGACCATGGAGTGGTTGAGGATTCTTGA
* * *
105425914 TTTAAGCAGAACGGCTTTGAAGGAATTACCATTCTCAATTGACAATCTTATTGGTCTT-CAAAAC
258 TTTAAGTAGAACGGCTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAA-
* * *
105425978 TTGAGATTGAACAACTGTGAGAA-CTTGTTT
322 TTGAGACTGAGCAACTGTGAAAACCTTGTTT
105426008 ACTGCCATTG
Statistics
Matches: 658, Mismatches: 112, Indels: 17
0.84 0.14 0.02
Matches are distributed among these distances:
425 13 0.02
426 640 0.97
427 5 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (425 bp):
TTTTCCAAAAACCTTAGACACCATGGAGAGGTTGGTGCATCTTGATTTAAGCGGAACGGCTTTGA
AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTATAATTTGAGATTGAACAACTGTGAAA
ACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTAACATATTCACACTTCAAGGT
TGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGACCATGGAGTGGTTGAGGATTCTTGATTT
AAGTAGAACGGCTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTGA
GACTGAGCAACTGTGAAAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTTACC
TTTTTAAATCTTCAAAATTGCTCAAGATTGGAGAT
Found at i:105425963 original size:639 final size:638
Alignment explanation
Indices: 105424804--105426007 Score: 1608
Period size: 639 Copynumber: 1.9 Consensus size: 638
105424794 ATCTATCTAG
* *
105424804 TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGATATATCTTGATTTAAGCGGAACGGCTTTGA
1 TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGAGATAGCTTGATTTAAGCGGAACGGCTTTGA
* * * **
105424869 AGGAATTACCATCCTCAATTGATAATCTTATTGGTCTTGTGAACTTGAGTTTGGACAACTGTAAA
66 AGAAACTACCATCCTCAATTGATAATCTTATTGGTCTTATGAACTTGAGACTGGACAACTGTAAA
* ** * * **
105424934 AATCTTGTTTGCCTTCCTAACAGTTTTTATAAATTGAAATCTCTTAAGATATTCACAATTCAAGG
131 AACCTTGTTTGCCTTCCTAACAACTTTTATAAATTGAAAACTCTTAACATATTCACAATTCAAAA
* *
105424999 TTGCTCGAGATTGGAGATATTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGATATCTTGATT
196 TTGCTCGAGATTGGAGATATTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGAGAGCTTGATT
*
105425064 TAAGTAGAACTGGTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTG
261 TAAGCAGAACTGGTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTG
* *
105425129 AGACTGAGCAACTGTGAAAACCTTGTTTGCCTTCCTGACAGCTTTTATAAATTGAAATCTCTTCA
326 AGACTGAACAACTGTGAAAACCTTGTTTGCCTTCCTGACAGCCTTTATAAATTGAAATCTCTTCA
* ** * * *
105425194 GTTTTTCTATCTTGAAGGTTGTTTAAGATTGGAGATTTTTCCAAAAACCTTGGACACCATGGAGA
391 GATTCACTATCTTGAAGGTTGCTTAAGATTGGAGATTTTTCCAAAAACCTTAGAAACCATGGAGA
* * * * * *
105425259 GGTTGGTGCATCTTGATTTAAGCGGAATGTCTTTGAAGGAATTACCATTCTCAAATGATAATCTT
456 GGTTGGAGCATCTTAATTTAAGCAGAACGGCTTTGAAGGAATTACCATTCTCAAATGACAATCTT
* *
105425324 ATTGGTCTT-ATATATTTAAGATTGAACAACTGTGAAAACCTTGTTTGTCTTCCTGACAACTTTT
521 ATTGGTCTTCA-AAACTTAAGATTGAACAACTGTGAAAA-CTTGTTTGTCTTCCTGACAACTTTT
105425388 ATAAATTGAAATATCTTATCTTTTTCTCTCTTCAAAATTGCTCGAGATTGGAGAT
584 ATAAATTGAAATATCTTATCTTTTTCTCTCTTCAAAATTGCTCGAGATTGGAGAT
* * * * *
105425443 TTTTCCAGAAATCTTAGAGGCCATGGAGTGGTTGAGGGT-GCTTGATTTAAGTGGAACGGCTTTG
1 TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGA-GATAGCTTGATTTAAGCGGAACGGCTTTG
* ** * *
105425507 AAGAAACTACCATCCTCAATTG-TCAATTTTATTTTTCTTAT-AGATTTGAGACT-GAGCGACTG
65 AAGAAACTACCATCCTCAATTGAT-AATCTTATTGGTCTTATGA-ACTTGAGACTGGA-CAACTG
* * * * *
105425569 TGAAAACCTTGTTTGCCTTCCTGACAACTTTTATAAATTGAAAACTCTT-ACCTTTTTA-AATCT
127 TAAAAACCTTGTTTGCCTTCCTAACAACTTTTATAAATTGAAAACTCTTAACATATTCACAA--T
* *
105425632 TCAAAATTGCTCGAGATTGGAGATTTTTCCAGAAATCTTAGAGACCATGGA-ATGGTTGAGGGAG
190 TCAAAATTGCTCGAGATTGGAGATATTTCCAGAAATCTTAGAGACCATGGAGA-GGTTGAGAGAG
*
105425696 CTTGATTTAAGCGGAAC-GGCTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTG
254 CTTGATTTAAGCAGAACTGG-TTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTT-
** * * *
105425760 A-GGATTTGAGATTGAACAACTGTGAAAACCTTGTTTGCCTTCCTGATAGCCTTTATAAATTGAA
317 ACACAATTGAGACTGAACAACTGTGAAAACCTTGTTTGCCTTCCTGACAGCCTTTATAAATTGAA
* * *
105425824 ATCTCTTAACAGATTCAC-A-CTTGAAGGTTGCTTGAGATTGGAGATTTTTCCAGAAATCTTAGA
382 ATCTCTT--CAGATTCACTATCTTGAAGGTTGCTTAAGATTGGAGATTTTTCCAAAAACCTTAGA
*
105425887 AACCATGGA-ATGGTT-GAGCTTTCTTAATTTAAGCAGAACGGCTTTGAAGGAATTACCATTCTC
445 AACCATGGAGA-GGTTGGAGC-ATCTTAATTTAAGCAGAACGGCTTTGAAGGAATTACCATTCTC
* * *
105425950 AATTGACAATCTTATTGGTCTTCAAAACTTGAGATTGAACAACTGTGAGAACTTGTTT
508 AAATGACAATCTTATTGGTCTTCAAAACTTAAGATTGAACAACTGTGAAAACTTGTTT
105426008 ACTGCCATTG
Statistics
Matches: 488, Mismatches: 63, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
637 2 0.00
638 23 0.05
639 453 0.93
640 4 0.01
641 6 0.01
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (638 bp):
TTTTCCAGAAATCTTAAAGACCATGGAGAGGTTGAGATAGCTTGATTTAAGCGGAACGGCTTTGA
AGAAACTACCATCCTCAATTGATAATCTTATTGGTCTTATGAACTTGAGACTGGACAACTGTAAA
AACCTTGTTTGCCTTCCTAACAACTTTTATAAATTGAAAACTCTTAACATATTCACAATTCAAAA
TTGCTCGAGATTGGAGATATTTCCAGAAATCTTAGAGACCATGGAGAGGTTGAGAGAGCTTGATT
TAAGCAGAACTGGTTTGAAGGAATTACCATCCTCAATTGACAATCTTATTGGTCTTACACAATTG
AGACTGAACAACTGTGAAAACCTTGTTTGCCTTCCTGACAGCCTTTATAAATTGAAATCTCTTCA
GATTCACTATCTTGAAGGTTGCTTAAGATTGGAGATTTTTCCAAAAACCTTAGAAACCATGGAGA
GGTTGGAGCATCTTAATTTAAGCAGAACGGCTTTGAAGGAATTACCATTCTCAAATGACAATCTT
ATTGGTCTTCAAAACTTAAGATTGAACAACTGTGAAAACTTGTTTGTCTTCCTGACAACTTTTAT
AAATTGAAATATCTTATCTTTTTCTCTCTTCAAAATTGCTCGAGATTGGAGAT
Found at i:105427213 original size:42 final size:42
Alignment explanation
Indices: 105427154--105427238 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
105427144 GGATTCCAAG
105427154 TATGACCGCTGAATGATGCTTCAACCTCATTTAGTTATCTCA
1 TATGACCGCTGAATGATGCTTCAACCTCATTTAGTTATCTCA
*
105427196 TATGACCGTTGAATGATGCTTCAACCTCATTTAGTTATCTCA
1 TATGACCGCTGAATGATGCTTCAACCTCATTTAGTTATCTCA
105427238 T
1 T
105427239 CTGTACTGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (42 bp):
TATGACCGCTGAATGATGCTTCAACCTCATTTAGTTATCTCA
Found at i:105429754 original size:3 final size:3
Alignment explanation
Indices: 105429748--105429990 Score: 64
Period size: 3 Copynumber: 82.0 Consensus size: 3
105429738 TACTACTACC
* * * *
105429748 AAT AAT AAT AAT AGTT AA- AA- AAT AAT AAT ACT AGT AAT AGT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
105429792 TAC AAC AAT GAT AAT AGT AAT AA- AAT AA- GAT GAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * *
105429836 ACA- AGT -AT ATT AAT AA- AAGT AA- AAA AAT AA- AAT AAA AAT AAT
1 A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
** * * * *
105429878 AAT AGC AAT AAT AAGT -AT ATT AAT AAT AGT AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** *
105429923 ACG AAT AAT AAT ATAT ATAT AAAT AAT AAT AGTT AGA- AAT AA- AA-
1 AAT AAT AAT AAT A-AT A-AT -AAT AAT AAT A-AT A-AT AAT AAT AAT
*
105429967 AAT AAT AGA- AGT AAT AAT AAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT
105429991 GGTATTAGAA
Statistics
Matches: 177, Mismatches: 42, Indels: 42
0.68 0.16 0.16
Matches are distributed among these distances:
2 20 0.11
3 135 0.76
4 21 0.12
5 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:105429864 original size:14 final size:14
Alignment explanation
Indices: 105429846--105429879 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
105429836 ACAAGTATAT
105429846 TAATAAAAGTAAAAA
1 TAATAAAA-TAAAAA
105429861 -AATAAAATAAAAA
1 TAATAAAATAAAAA
105429874 TAATAA
1 TAATAA
105429880 TAGCAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
TAATAAAATAAAAA
Found at i:105429880 original size:52 final size:51
Alignment explanation
Indices: 105429810--105429909 Score: 121
Period size: 52 Copynumber: 1.9 Consensus size: 51
105429800 TGATAATAGT
* * *
105429810 AATAAAATAAGATGATAATAATAAAT-ACAAGTATATTAATAAAAGTAAAAA
1 AATAAAATAAAATAATAAT-AGAAATAACAAGTATATTAATAAAAGTAAAAA
* * *
105429861 AATAAAATAAAAATAATAATAGCAATAATAAGTATATTAATAATAGTAA
1 AATAAAAT-AAAATAATAATAGAAATAACAAGTATATTAATAAAAGTAA
105429910 TAATAACAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
51 12 0.29
52 29 0.71
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (51 bp):
AATAAAATAAAATAATAATAGAAATAACAAGTATATTAATAAAAGTAAAAA
Found at i:105430050 original size:21 final size:21
Alignment explanation
Indices: 105430026--105430070 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
105430016 TACAAGTATG
* *
105430026 ATAATAATAATGGTAATAAAA
1 ATAAAAATAATAGTAATAAAA
*
105430047 ATAAAAATAATAGTAATAATA
1 ATAAAAATAATAGTAATAAAA
105430068 ATA
1 ATA
105430071 CGTTAAGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (21 bp):
ATAAAAATAATAGTAATAAAA
Found at i:105433015 original size:20 final size:20
Alignment explanation
Indices: 105432980--105433017 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
105432970 AGCGAACAAA
105432980 ATATAAAAATATAAATATTT
1 ATATAAAAATATAAATATTT
105433000 ATATATAAAATA-AAATAT
1 ATATA-AAAATATAAATAT
105433018 AAATTGAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATATAAAAATATAAATATTT
Found at i:105433506 original size:20 final size:20
Alignment explanation
Indices: 105433463--105433511 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
105433453 AGGGGCAATT
* * *
105433463 AAATCAATTTGGTTAAAATC
1 AAATCAAATTGATTAAAATA
*
105433483 AAATCAAATTGATTAGAATA
1 AAATCAAATTGATTAAAATA
*
105433503 AAATAAAAT
1 AAATCAAAT
105433512 CAGGATATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATA
Found at i:105436940 original size:86 final size:86
Alignment explanation
Indices: 105436699--105437038 Score: 404
Period size: 86 Copynumber: 4.0 Consensus size: 86
105436689 TAAACAGCGG
* *
105436699 GAATAAATCCCGAAACATATTTAATTTAA-TTTAATTCTCATTTGGAAATAAAATAAAATAA---
1 GAATAAATCCCGAAACAGATTTTATTTAACTTTAATTCTCATTTGGAAATAAAATAAAA-AATGG
* *
105436760 AATAAAATCTTGTTAAATGACGA
65 AATAAAATC-TGTTGAACGACGA
** * * *
105436783 GAATAAATCTTGAAACAGATTTTATTTAATTTTAATTTCTCATTTTGATAACAAAATAAAAAATG
1 GAATAAATCCCGAAACAGATTTTATTTAACTTTAA-TTCTCATTTGGA-AATAAAATAAAAAATG
* *
105436848 GAATAAAATCTGTTGAACGTCAA
64 GAATAAAATCTGTTGAACGACGA
* * * * *
105436871 GAATAAATCCCAAAATAGATTTTATTTAA-TTCAATACTCGTTTTGGAAATAAAATAAAAAATGG
1 GAATAAATCCCGAAACAGATTTTATTTAACTTTAATTCTC-ATTTGGAAATAAAATAAAAAATGG
*
105436935 AATAAAATCCT-TTGAACGACGG
65 AATAAAAT-CTGTTGAACGACGA
* * *
105436957 GAATAAATCCCGAAAGAGATTTTTTTTAACTTTAATTCTCATTTGGAAATAAAATAAAAAATGAA
1 GAATAAATCCCGAAACAGATTTTATTTAACTTTAATTCTCATTTGGAAATAAAATAAAAAATGGA
105437022 ATAAAATCTGTTGAACG
66 ATAAAATCTGTTGAACG
105437039 GCGGAAATAA
Statistics
Matches: 217, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
84 25 0.12
85 7 0.03
86 112 0.52
87 30 0.14
88 34 0.16
89 9 0.04
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (86 bp):
GAATAAATCCCGAAACAGATTTTATTTAACTTTAATTCTCATTTGGAAATAAAATAAAAAATGGA
ATAAAATCTGTTGAACGACGA
Found at i:105437027 original size:172 final size:172
Alignment explanation
Indices: 105436699--105437038 Score: 445
Period size: 172 Copynumber: 2.0 Consensus size: 172
105436689 TAAACAGCGG
* * * *
105436699 GAATAAATCCCGAAACATATTTAATTTAATTTAATTCTCATTTGGAAATAAAATAAAATAAAATA
1 GAATAAATCCCAAAACAGATTTAATTTAATTCAATACTCATTTGGAAATAAAATAAAATAAAATA
* * ** * *
105436764 AAATCTTGTTAAATGACGAGAATAAATCTTGAAACAGATTTTATTTAATTTTAATTTCTCATTTT
66 AAATCCTGTTAAACGACGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCATTTG
*
105436829 GATAACAAAATAAAAAATGGAATAAAATCTGTTGAACGTCAA
131 GATAACAAAATAAAAAATGAAATAAAATCTGTTGAACGTCAA
* * *
105436871 GAATAAATCCCAAAATAGATTTTATTTAATTCAATACTCGTTTTGGAAATAAAATAAAA-AATGG
1 GAATAAATCCCAAAACAGATTTAATTTAATTCAATACTC-ATTTGGAAATAAAATAAAATAA---
* * * *
105436935 AATAAAATCCT-TTGAACGACGGGAATAAATCCCGAAAGAGATTTTTTTTAACTTTAA-TTCTCA
62 AATAAAATCCTGTTAAACGACGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCA
*
105436998 TTTGGA-AATAAAATAAAAAATGAAATAAAATCTGTTGAACG
127 TTTGGATAACAAAATAAAAAATGAAATAAAATCTGTTGAACG
105437039 GCGGAAATAA
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
172 68 0.47
173 29 0.20
174 38 0.26
175 10 0.07
ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33
Consensus pattern (172 bp):
GAATAAATCCCAAAACAGATTTAATTTAATTCAATACTCATTTGGAAATAAAATAAAATAAAATA
AAATCCTGTTAAACGACGAGAATAAATCCCGAAACAGATTTTATTTAACTTTAATTTCTCATTTG
GATAACAAAATAAAAAATGAAATAAAATCTGTTGAACGTCAA
Found at i:105437248 original size:22 final size:22
Alignment explanation
Indices: 105437221--105437263 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
105437211 TTAGTGAACA
105437221 AAATATATAAATATAAATAAAC
1 AAATATATAAATATAAATAAAC
* *
105437243 AAATATTTATATATAAATAAA
1 AAATATATAAATATAAATAAA
105437264 ATATAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATATATAAATATAAATAAAC
Found at i:105437260 original size:14 final size:14
Alignment explanation
Indices: 105437221--105437268 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
105437211 TTAGTGAACA
105437221 AAATATATAAATAT
1 AAATATATAAATAT
* *
105437235 AAATAAACAAATAT
1 AAATATATAAATAT
**
105437249 TTATATATAAATA-
1 AAATATATAAATAT
105437262 AAATATA
1 AAATATA
105437269 AATCAAATAA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
13 5 0.19
14 21 0.81
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATATATAAATAT
Found at i:105437266 original size:33 final size:31
Alignment explanation
Indices: 105437223--105437291 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 31
105437213 AGTGAACAAA
*
105437223 ATATATAAATATAA-ATAAA-CAAAT-ATTT
1 ATATATAAATAAAATATAAATCAAATAATTT
105437251 ATATATAAATAAAATATAAATCAAATAATTT
1 ATATATAAATAAAATATAAATCAAATAATTT
*
105437282 ATATTTAAAT
1 ATATATAAAT
105437292 TGTCAGATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 13 0.36
29 5 0.14
30 5 0.14
31 13 0.36
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (31 bp):
ATATATAAATAAAATATAAATCAAATAATTT
Found at i:105438037 original size:23 final size:23
Alignment explanation
Indices: 105438011--105438062 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
105438001 TTATTTTTAA
* *
105438011 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAATGATAAT
105438034 ATTTAGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
105438057 ATTTAG
1 ATTTAG
105438063 TGATAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAATGATAAT
Found at i:105438038 original size:13 final size:13
Alignment explanation
Indices: 105438020--105438075 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
105438010 AATTTTGAAT
105438020 TATTTAGTGATAA
1 TATTTAGTGATAA
*
105438033 TATTTA--GA-AT
1 TATTTAGTGATAA
*
105438043 TATTTAATGATAA
1 TATTTAGTGATAA
105438056 TATTTAGTGATAA
1 TATTTAGTGATAA
105438069 TATTTAG
1 TATTTAG
105438076 GAAAATCTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.19
11 2 0.05
12 2 0.05
13 26 0.70
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:105454952 original size:19 final size:18
Alignment explanation
Indices: 105454901--105454956 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
105454891 TGAAAATAAA
105454901 TATAATTG-TAATAATTT
1 TATAATTGTTAATAATTT
*
105454918 T-TAATCAT-TTATTAATTT
1 TATAAT--TGTTAATAATTT
105454936 TATAATTGTTAAATAATTT
1 TATAATTGTT-AATAATTT
105454955 TA
1 TA
105454957 AAAATTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.13
17 2 0.06
18 12 0.39
19 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (18 bp):
TATAATTGTTAATAATTT
Found at i:105455095 original size:21 final size:21
Alignment explanation
Indices: 105455069--105455121 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
105455059 TGCTGTTTCT
* *
105455069 AATCTCACTGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
105455090 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
105455111 AATCTCACCGC
1 AATCTCACCGC
105455122 CACCGCTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:105458366 original size:23 final size:23
Alignment explanation
Indices: 105458271--105458367 Score: 69
Period size: 24 Copynumber: 4.3 Consensus size: 23
105458261 AGTAAATGAT
105458271 AATAATAAAAC-ATTTTAAAATA
1 AATAATAAAACAATTTTAAAATA
* * * *
105458293 AAT-A-AATA-GAGTTCAAAATA
1 AATAATAAAACAATTTTAAAATA
105458313 AAGTATATAAAACAATTTTAAAATA
1 AA-TA-ATAAAACAATTTTAAAATA
** *
105458338 GGTAATCAAAACGATTTT-AAATA
1 AATAAT-AAAACAATTTTAAAATA
105458361 AATAATA
1 AATAATA
105458368 TATAATAACT
Statistics
Matches: 56, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
20 14 0.25
21 2 0.04
22 4 0.07
23 12 0.21
24 15 0.27
25 9 0.16
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (23 bp):
AATAATAAAACAATTTTAAAATA
Found at i:105458705 original size:16 final size:14
Alignment explanation
Indices: 105458669--105458698 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
105458659 GTTTAAAGAG
*
105458669 CAAATAAAAAAAAA
1 CAAACAAAAAAAAA
105458683 CAAACAAAAAAAAA
1 CAAACAAAAAAAAA
105458697 CA
1 CA
105458699 GAAACAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.13, G:0.00, T:0.03
Consensus pattern (14 bp):
CAAACAAAAAAAAA
Found at i:105463011 original size:20 final size:20
Alignment explanation
Indices: 105462983--105463021 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
105462973 TACTTGTAAA
*
105462983 AATATCATGGAATTGATAAG
1 AATAGCATGGAATTGATAAG
105463003 AATAGCATGGAATTGATAA
1 AATAGCATGGAATTGATAA
105463022 TGCTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.21, T:0.28
Consensus pattern (20 bp):
AATAGCATGGAATTGATAAG
Found at i:105482402 original size:7 final size:7
Alignment explanation
Indices: 105482386--105482533 Score: 66
Period size: 7 Copynumber: 21.9 Consensus size: 7
105482376 AATAAATGAA
*
105482386 ATAATTT
1 ATAATAT
105482393 ATAATAT
1 ATAATAT
105482400 ATAATAT
1 ATAATAT
*
105482407 A-AAAAT
1 ATAATAT
* *
105482413 GTAAGTTT
1 ATAA-TAT
*
105482421 CTAA-A-
1 ATAATAT
*
105482426 ATAATGT
1 ATAATAT
105482433 ATAATAT
1 ATAATAT
*
105482440 A-AATAA
1 ATAATAT
105482446 AT-ATAT
1 ATAATAT
105482452 A-AGATAT
1 ATA-ATAT
105482459 ATAAGT-T
1 ATAA-TAT
105482466 A-AA-AT
1 ATAATAT
105482471 ATAATAT
1 ATAATAT
105482478 ATAATA-
1 ATAATAT
*
105482484 ATAATTT
1 ATAATAT
105482491 ATAA-ATT
1 ATAATA-T
* *
105482498 TTGAAAAT
1 AT-AATAT
105482506 ATAATAAT
1 ATAAT-AT
*
105482514 ATAATAA
1 ATAATAT
105482521 ATAATAT
1 ATAATAT
105482528 ATAATA
1 ATAATA
105482534 AATTAAAAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 34
0.66 0.12 0.22
Matches are distributed among these distances:
5 5 0.05
6 22 0.21
7 60 0.57
8 17 0.16
9 1 0.01
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.39
Consensus pattern (7 bp):
ATAATAT
Found at i:105483578 original size:30 final size:30
Alignment explanation
Indices: 105483544--105483602 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
105483534 TTGGGTAGGG
105483544 TGTAACAGGTCTG-GGCTATTTTGGG-TTTGC
1 TGTAACAGGTCTGAGG-TA-TTTGGGCTTTGC
*
105483574 TGTAACGGGTCTGAGGTATTTGGGCTTTG
1 TGTAACAGGTCTGAGGTATTTGGGCTTTG
105483603 TGTTTGGGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 6 0.23
30 18 0.69
31 2 0.08
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.39
Consensus pattern (30 bp):
TGTAACAGGTCTGAGGTATTTGGGCTTTGC
Found at i:105488195 original size:26 final size:26
Alignment explanation
Indices: 105488158--105488267 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
105488148 TGATACAAAT
* * *
105488158 TGATAATAGGTTAGGTAAATGCTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105488184 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105488210 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
105488236 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
105488262 TGATAA
1 TGATAA
105488268 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:105491220 original size:35 final size:35
Alignment explanation
Indices: 105491154--105491229 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
105491144 AATAAAATTT
105491154 AAATATTTTTAAATTATAGTCATAATAAAAT-ATCA
1 AAATATTTTTAAATTATAGTCATAATAAAATAAT-A
* * *
105491189 AAATATTTTTCAAATTATATTTA-AATCAAATAATA
1 AAATATTTTT-AAATTATAGTCATAATAAAATAATA
105491224 AAATAT
1 AAATAT
105491230 AAATTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (35 bp):
AAATATTTTTAAATTATAGTCATAATAAAATAATA
Found at i:105495119 original size:22 final size:22
Alignment explanation
Indices: 105495085--105495143 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
105495075 ATATTACATT
* * *
105495085 AATAAGAAAATAATAATCTAAT-
1 AATAATAATATAA-AATATAATA
*
105495107 AATGATAATATAAAATATAATA
1 AATAATAATATAAAATATAATA
*
105495129 AATAATAATAGAAAA
1 AATAATAATATAAAA
105495144 GGAATAAAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 7 0.23
22 23 0.77
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (22 bp):
AATAATAATATAAAATATAATA
Found at i:105495268 original size:3 final size:3
Alignment explanation
Indices: 105495045--105495257 Score: 72
Period size: 3 Copynumber: 71.7 Consensus size: 3
105495035 AATAGAAATG
* * * *
105495045 ATA ATA ATA ATA ATA ATA A-A GTA GAAA ATA ATA TTA CATTA ATA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA
* *
105495092 A-A ATA ATA AT- CTA ATA ATG ATA AT- ATA A-A AT- ATA ATAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* * * * *
105495133 ATA ATA GAAA AGGA ATA AAA CATA A-A A-A AT- ATA ATG ATA ATA ATG
1 ATA ATA -ATA A-TA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * **
105495178 GTA GTA ATA A-A AGTA GTA ATA CTA ATG ATA GCAGC A-A AT- ATA ATA
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA
* *
105495223 GTA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
105495258 TTGGATAATA
Statistics
Matches: 154, Mismatches: 35, Indels: 42
0.67 0.15 0.18
Matches are distributed among these distances:
2 21 0.14
3 118 0.77
4 12 0.08
5 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:105495923 original size:20 final size:18
Alignment explanation
Indices: 105495870--105495925 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 18
105495860 ATGTATATGT
*
105495870 AAAAAAA-AAG-AATGAA
1 AAAAAAAGAAGAAACGAA
**
105495886 AAAAAAAGAAGATTCGAA
1 AAAAAAAGAAGAAACGAA
105495904 AAAAGAAAGAAAGAAACGAA
1 AAAA-AAAG-AAGAAACGAA
105495924 AA
1 AA
105495926 TCACCTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 7 0.23
17 3 0.10
18 7 0.23
19 4 0.13
20 10 0.32
ACGTcount: A:0.75, C:0.04, G:0.16, T:0.05
Consensus pattern (18 bp):
AAAAAAAGAAGAAACGAA
Found at i:105497200 original size:16 final size:15
Alignment explanation
Indices: 105497174--105497239 Score: 69
Period size: 16 Copynumber: 4.0 Consensus size: 15
105497164 TAATGATGTG
105497174 AATAGTAAAATATATAA
1 AATA-TAAAATAT-TAA
105497191 AATATAAAATATTAA
1 AATATAAAATATTAA
*
105497206 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
105497222 AATAATAATAATAATTAA
1 AAT-ATAA-AAT-ATTAA
105497240 TATTGACAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.19
16 22 0.51
17 9 0.21
18 4 0.09
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:105497208 original size:8 final size:8
Alignment explanation
Indices: 105497174--105497239 Score: 62
Period size: 8 Copynumber: 8.0 Consensus size: 8
105497164 TAATGATGTG
*
105497174 AATAGTAA
1 AATATTAA
105497182 AATATATAA
1 AATAT-TAA
105497191 AATA-TAA
1 AATATTAA
105497198 AATATTAA
1 AATATTAA
*
105497206 AATATCAA
1 AATATTAA
*
105497214 AATATTAG
1 AATATTAA
*
105497222 AATAATAA
1 AATATTAA
105497230 TAATAATTAA
1 -AAT-ATTAA
105497240 TATTGACAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
7 7 0.15
8 26 0.55
9 10 0.21
10 4 0.09
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.32
Consensus pattern (8 bp):
AATATTAA
Found at i:105497426 original size:22 final size:24
Alignment explanation
Indices: 105497363--105497427 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
105497353 CGTGATAATA
*
105497363 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
105497388 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
105497411 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
105497428 GATGACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:105497480 original size:25 final size:25
Alignment explanation
Indices: 105497451--105497507 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
105497441 AAAAATATAT
* *
105497451 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAAAATAATATAAAAG
* * *
105497476 ATATATACATAAAATAGTATAAAAT
1 ATATATAAATAAAATAATATAAAAG
105497501 ATATATA
1 ATATATA
105497508 TACGTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAAAATAATATAAAAG
Found at i:105498210 original size:36 final size:30
Alignment explanation
Indices: 105498118--105498200 Score: 139
Period size: 30 Copynumber: 2.8 Consensus size: 30
105498108 TGTAGCAAGC
* * *
105498118 GTGGCTAGTGGATTTGGTGGTGGAGAAGGT
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
105498148 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
1 GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
105498178 GTGGCTAGTGGAGTTGGTGGTGG
1 GTGGCTAGTGGAGTTGGTGGTGG
105498201 TGGTGGAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.17, C:0.04, G:0.52, T:0.28
Consensus pattern (30 bp):
GTGGCTAGTGGAGTTGGTGGTGGAAAAGGA
Found at i:105498563 original size:28 final size:28
Alignment explanation
Indices: 105498532--105498585 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
105498522 GCATCTCGCA
**
105498532 AGTTCGCAGGG-TCAGCTTGCACTTTGAC
1 AGTTCGC-GGGATCAGCAAGCACTTTGAC
*
105498560 AGTTGGCGGGATCAGCAAGCACTTTG
1 AGTTCGCGGGATCAGCAAGCACTTTG
105498586 CCACTTGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 3 0.14
28 19 0.86
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.26
Consensus pattern (28 bp):
AGTTCGCGGGATCAGCAAGCACTTTGAC
Found at i:105501026 original size:22 final size:21
Alignment explanation
Indices: 105501001--105501050 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
105500991 GAGTTACTAT
*
105501001 TTTAAGGTTTATGGGTTATGG
1 TTTAAGGATTATGGGTTATGG
* *
105501022 ATTTAGGGATTATGGTTTATGG
1 -TTTAAGGATTATGGGTTATGG
105501044 TTTAAGG
1 TTTAAGG
105501051 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGGTTATGG
Found at i:105504467 original size:23 final size:23
Alignment explanation
Indices: 105504437--105504652 Score: 210
Period size: 23 Copynumber: 9.4 Consensus size: 23
105504427 TGGCTACTGT
*
105504437 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
105504460 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
105504483 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * *
105504506 TGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
** *
105504529 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG
* *
105504551 ATGTTT-TATCGTTGT-AATTG-AG
1 -TGTTTAAAT-GCTGTAAATTGAAG
* * *
105504573 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGTAAATTGAAG
*
105504596 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGTAAATTGAAG
105504620 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
*
105504643 TGCTTAAATG
1 TGTTTAAATG
105504653 TTATACAAGT
Statistics
Matches: 162, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
22 23 0.14
23 132 0.81
24 7 0.04
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.40
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:105504572 original size:22 final size:22
Alignment explanation
Indices: 105504544--105504603 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
105504534 AGTTGCTGGA
**
105504544 AATTGAGATGTTTTATCGTTG-T
1 AATTGAGATGTTAAAT-GTTGTT
*
105504566 AATTGAGTTGTATAAATGTTGTT
1 AATTGAGATGT-TAAATGTTGTT
105504589 AATTGAGATGTTAAA
1 AATTGAGATGTTAAA
105504604 GTGCTGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.45
Consensus pattern (22 bp):
AATTGAGATGTTAAATGTTGTT
Found at i:105505616 original size:23 final size:23
Alignment explanation
Indices: 105505586--105506454 Score: 614
Period size: 23 Copynumber: 37.9 Consensus size: 23
105505576 TAGTAAATGT
*
105505586 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
*
105505609 TGCAAATTGAAGTGTTTTAGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* *
105505633 TGGAAATTG-AGATGTTTTA-TCGC
1 TGCAAATTGAAG-TGTTTAAGT-GC
* * * * *
105505656 TG-TAATTGAGGTGTATAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** * *
105505678 TGTTAATTGAAATGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
105505701 TGCAAATTGAAGTGTTTTAA-TGC
1 TGCAAATTGAAGTG-TTTAAGTGC
* *
105505724 TGCAAATTGAAGTGTTAAATTGC
1 TGCAAATTGAAGTGTTTAAGTGC
105505747 TGCAAATTGAAGTGTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
* *
105505770 TGTAAATTGAAGTGTTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * * *
105505793 TGTAAATTGAAGTGCTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
*
105505816 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
105505839 TGCAAATTGAAGTGTTT-AGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* * * *
105505862 TGGACATTG-AGATGTTTTA-TCAC
1 TGCAAATTGAAG-TGTTTAAGT-GC
* * * * *
105505885 TG-TAATTGAGGTGTATAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** * *
105505907 TGTTAATTGAGGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
105505930 TGCAAATTGAAGTGTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
* * * *
105505953 TGTAAATCGAAGTGTTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
* * * * *
105505976 TGTAAATTGAAGTGCTCAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
*
105505999 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
105506022 TGCAAATTGAAGTGTTT-AGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* * *
105506045 TGGACATTG-AGATGTTTTA-TCGC
1 TGCAAATTGAAG-TGTTTAAGT-GC
* ** * *
105506068 TG-TAATT-AAGGTGCATAAATGT
1 TGCAAATTGAA-GTGTTTAAGTGC
** *
105506090 TGTTAATTG-AGATGTTAAAGTGC
1 TGCAAATTGAAG-TGTTTAAGTGC
* *
105506113 TGCAAATTGAAGTGCTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * *
105506136 TGTAAATTGAAGTGTTAAAGTGT
1 TGCAAATTGAAGTGTTTAAGTGC
105506159 TGCAAATTGAAGTGTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
* * *
105506182 TGTAAATTGAAGAGTTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * * *
105506205 TGTAAATTGAAGTGCTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
*
105506228 TGCAAATTGAAGTGTTTAAGTAC
1 TGCAAATTGAAGTGTTTAAGTGC
105506251 TGCAAATTGAAGTGTTT-AGTTGC
1 TGCAAATTGAAGTGTTTAAG-TGC
* * *
105506274 TGGACATTG-AGATGTTTTA-TCGC
1 TGCAAATTGAAG-TGTTTAAGT-GC
* * * * *
105506297 TG-TAATTGAGGTGTATAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
** *
105506319 TGTTAATTG-AGATGTTAAAGTGC
1 TGCAAATTGAAG-TGTTTAAGTGC
*
105506342 TGCAAATTGAAGTGTTAAAGTGC
1 TGCAAATTGAAGTGTTTAAGTGC
*
105506365 TGCAAATTGAAGTTTTTGAA-TGC
1 TGCAAATTGAAGTGTTT-AAGTGC
*
105506388 TGCAAATTGAAGTGTTTAAATGC
1 TGCAAATTGAAGTGTTTAAGTGC
* * * *
105506411 TGTAAATTGAAGTGCTTAAATGT
1 TGCAAATTGAAGTGTTTAAGTGC
105506434 TGCAAATTGAAGTGTTTAAGT
1 TGCAAATTGAAGTGTTTAAGT
105506455 ACTTATTTTG
Statistics
Matches: 682, Mismatches: 121, Indels: 86
0.77 0.14 0.10
Matches are distributed among these distances:
22 77 0.11
23 569 0.83
24 36 0.05
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (23 bp):
TGCAAATTGAAGTGTTTAAGTGC
Found at i:105505938 original size:183 final size:183
Alignment explanation
Indices: 105505728--105506218 Score: 786
Period size: 183 Copynumber: 2.7 Consensus size: 183
105505718 TAATGCTGCA
* * *
105505728 AATTGAAGTGTTAAATTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGT
105505793 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
* *
105505858 TTGCTGGACATTGAGATGTTTTATCACTGTAATTGAGGTGTATAAATGTTGTT
131 TTGCTGGACATTGAGATGTTTTATCACTGTAATTAAGGTGCATAAATGTTGTT
*
105505911 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATCGAAGTGTTTAAATGT
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGT
*
105505976 TGTAAATTGAAGTGCTCAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
*
105506041 TTGCTGGACATTGAGATGTTTTATCGCTGTAATTAAGGTGCATAAATGTTGTT
131 TTGCTGGACATTGAGATGTTTTATCACTGTAATTAAGGTGCATAAATGTTGTT
* * *
105506094 AATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCTGTAAATTGAAGTG-TTAAAGTG
1 AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TG
* * * * * * * * *
105506158 TTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGAGTTTAAATGCTGTAAATTGAAGTG
65 TTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTG
105506219 CTTAAATGTT
Statistics
Matches: 285, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
182 5 0.02
183 280 0.98
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (183 bp):
AATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGT
TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
TTGCTGGACATTGAGATGTTTTATCACTGTAATTAAGGTGCATAAATGTTGTT
Found at i:105506319 original size:229 final size:228
Alignment explanation
Indices: 105505659--105506452 Score: 972
Period size: 229 Copynumber: 3.5 Consensus size: 228
105505649 TTATCGCTGT
* * * * *
105505659 AATTGAGGTGTATAAATGTTGTTAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTTAATGC
1 AATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
* * * * *
105505724 TGCAAATTGAAGTG-TTAAATTGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTA
65 TGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTA
* * * * ** * * * * * * *
105505788 AATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGA-AGTGTTTAAGT-ACTGCAAATTGAAG
129 AGTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGA-TGTTTTA-TCGCTG-TAATTGAGG
* ** * * ** * *
105505851 TGTTTAGTTGCTG-GACATTGAGATGTTTTA-TCACTG-T
191 TGTATAAATGTTGTTA-ATTGAGATGTTAAAGT-GCTGCA
* * * *
105505888 AATTGAGGTGTATAAATGTTGTTAATTGAGGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
1 AATTGAAGTGT-TAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
* * * *
105505953 TGTAAATCGAAGTGTTTAAATGTTGTAAATTGAAGTGCTCAAATGTTGCAAATTGAAGTGTTTAA
65 TGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
* *
105506018 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTAAGGTGCA
130 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTA
105506083 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCA
195 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCA
*
105506117 AATTGAAGTGCTTAAATGCTGTAAATTGAAGTGTTAAAGTGTTGCAAATTGAAGTGTTTGAATGC
1 AATTGAAGTG-TTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGC
* *
105506182 TGTAAATTGAAGAGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
65 TGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
105506247 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTA
130 GTACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTA
105506312 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCA
195 TAAATGTTGTTAATTGAGATGTTAAAGTGCTGCA
* * * *
105506346 AATTGAAGTGTTAAAGTGCTGCAAATTGAAGTTTTTGAA-TGCTGCAAATTGAAGTGTTTAAATG
1 AATTGAAGTGTTAAA-TGCTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGTTTGAATG
* * *
105506410 CTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAA
64 CTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAA
105506453 GTACTTATTT
Statistics
Matches: 499, Mismatches: 57, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
228 35 0.07
229 452 0.91
230 12 0.02
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (228 bp):
AATTGAAGTGTTAAATGCTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGCT
GTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAG
TACTGCAAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTAT
AAATGTTGTTAATTGAGATGTTAAAGTGCTGCA
Found at i:105516840 original size:14 final size:14
Alignment explanation
Indices: 105516802--105516844 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
105516792 CAAAATGTAC
105516802 AATATAATTAAA-T
1 AATATAATTAAATT
105516815 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
105516830 AA-ATAATTTAATT
1 AATATAATTAAATT
105516843 AA
1 AA
105516845 CTTTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:105519913 original size:85 final size:85
Alignment explanation
Indices: 105519759--105520007 Score: 349
Period size: 85 Copynumber: 2.9 Consensus size: 85
105519749 TTTATTGGAA
* * *
105519759 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGGAAAAACGCCGTTACAGGTCATG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTTTGGG-AAAACGCCGCTAAAGGTCATG
105519824 GCTTTTAGCGGCGTTTGTGGG
65 GCTTTTAGCGGCGTTTGTGGG
* * * *
105519845 AAAAACGCCGCTAAAGGTCATGGATTTTAG-AGCGTTTTTGGGAAACACGTCGCTAAAGGTCATG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTTTGGGAAA-ACGCCGCTAAAGGTCATG
*
105519909 GCTTTTAGCGGTGTTTGTGGG
65 GCTTTTAGCGGCGTTTGTGGG
* * *
105519930 AAAAACACCGCTAAATGTCAGGGCTTTTAGCGGCGTTTGTT-GGAAAAGCGCCGCTAAAGGTCAG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTT-TTGGGAAAA-CGCCGCTAAAGGTCAT
105519994 GGCTTTTAGCGGCG
64 GGCTTTTAGCGGCG
105520008 CTTTTTCTAC
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
84 3 0.02
85 72 0.50
86 66 0.46
87 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTTTGGGAAAACGCCGCTAAAGGTCATGG
CTTTTAGCGGCGTTTGTGGG
Found at i:105519913 original size:128 final size:128
Alignment explanation
Indices: 105519767--105520002 Score: 373
Period size: 128 Copynumber: 1.8 Consensus size: 128
105519757 AAAAAAACGC
* * * *
105519767 CGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGGAAAAACGCCGTTACAGGTCATGGCTTTTAG
1 CGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCAGGGCTTTTAG
*
105519832 CGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGGATTTTAGAGCGTTTTTGGGAAACACGT
66 CGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAGGGATTTTAGAGCGTTTTTGGGAAACACGT
* * *
105519895 CGCTAAAGGTCATGGCTTTTAGCGGTGTTTGTGGGAAAAACACCGCTAAATGTCAGGGCTTTTAG
1 CGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCAGGGCTTTTAG
* * *
105519960 CGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCAGGGCTTTTAG
66 CGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAGGGATTTTAG
105520003 CGGCGCTTTT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
128 97 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (128 bp):
CGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGGAAAAACACCGCTAAAGGTCAGGGCTTTTAG
CGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCAGGGATTTTAGAGCGTTTTTGGGAAACACGT
Found at i:105520029 original size:43 final size:43
Alignment explanation
Indices: 105519759--105520007 Score: 356
Period size: 43 Copynumber: 5.8 Consensus size: 43
105519749 TTTATTGGAA
105519759 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
* * *
105519802 AAAAACGCCGTTACAGGTCATGGCTTTTAGCGGCGTTTGTGGG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
* * * *
105519845 AAAAACGCCGCTAAAGGTCATGGATTTTAG-AGCGTTTTTGGG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
* * * *
105519887 AAACACGTCGCTAAAGGTCATGGCTTTTAGCGGTGTTTGTGGG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
* * *
105519930 AAAAACACCGCTAAATGTCAGGGCTTTTAGCGGCGTTTGTTGG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
*
105519973 AAAAGCGCCGCTAAAGGTCAGGGCTTTTAGCGGCG
1 AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCG
105520008 CTTTTTCTAC
Statistics
Matches: 181, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 37 0.20
43 144 0.80
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGGTCAGGGCTTTTAGCGGCGTTTGTGGG
Found at i:105534167 original size:17 final size:15
Alignment explanation
Indices: 105534147--105534205 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 15
105534137 TTTTTTAAAT
105534147 ACGAGAATTTTGAAAAC
1 ACGA-AATTTTG-AAAC
105534164 ACGAGAA-TTTGTAAAC
1 ACGA-AATTTTG-AAAC
*
105534180 ACGAATATTTAGAAAC
1 ACGAA-ATTTTGAAAC
105534196 ACGAAATTTT
1 ACGAAATTTT
105534206 TGGAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.14
16 22 0.59
17 10 0.27
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (15 bp):
ACGAAATTTTGAAAC
Found at i:105534279 original size:18 final size:16
Alignment explanation
Indices: 105534258--105534311 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 16
105534248 AACACGGGAA
105534258 TTTTTAAAACAAGACATT
1 TTTTTAAAACAA-A-ATT
*
105534276 TTTTTGAAACAAAATTT
1 TTTTTAAAACAAAA-TT
*
105534293 TTTCTTAAAAAAAAATT
1 TTT-TTAAAACAAAATT
105534310 TT
1 TT
105534312 AAATACGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 1 0.03
17 10 0.32
18 20 0.65
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.44
Consensus pattern (16 bp):
TTTTTAAAACAAAATT
Done.