Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 329 of 356
Found at i:105987893 original size:58 final size:57
Alignment explanation
Indices: 105987730--105987899 Score: 245
Period size: 56 Copynumber: 3.0 Consensus size: 57
105987720 TCAATTTCTG
* * *
105987730 TTTTCAATTTATGTTTTTC-AAAAAAATTAACTCATATTGCGAGAGGTGAGTTAAGCC
1 TTTT-AATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
105987787 TTTTAATTTCTATTTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
105987843 TTTTGATTTCTGTTTTTCAAAAAAAAAGCAACTCATATGGCGAGAGGTGAGTTGAGC
1 TTTTAATTTCTGTTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
105987900 TTTGGCTCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
56 62 0.61
57 4 0.04
58 36 0.35
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (57 bp):
TTTTAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:105988109 original size:44 final size:44
Alignment explanation
Indices: 105988046--105988155 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
105988036 CAGATTTGGA
*
105988046 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCGCGAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
105988090 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
1 CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
*
105988134 CTCCCTGAAGTTGCAGTAGAGC
1 CTCCCTGAAGTTGCAGTGGAGC
105988156 TGATCGAGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (44 bp):
CTCCCTGAAGTTGCAGTGGAGCATGTTAAAGTCACGAGTCTTGT
Found at i:105990228 original size:24 final size:24
Alignment explanation
Indices: 105990201--105990251 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
105990191 TTTTTTTAAA
*
105990201 ATACCATAAT-ATTTATATATTTTT
1 ATACCAT-ATCATATATATATTTTT
*
105990225 ATACCATCTCATATATATATTTTT
1 ATACCATATCATATATATATTTTT
105990249 ATA
1 ATA
105990252 TTATTCTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (24 bp):
ATACCATATCATATATATATTTTT
Found at i:105994785 original size:17 final size:17
Alignment explanation
Indices: 105994762--105994803 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
105994752 GTAATACCTA
105994762 AAATATAA-T-AATAATG
1 AAATATAAGTAAATAA-G
105994778 AAAGTATAAGTAAATAAG
1 AAA-TATAAGTAAATAAG
105994796 AAATATAA
1 AAATATAA
105994804 ATAGATGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 10 0.43
18 5 0.22
19 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (17 bp):
AAATATAAGTAAATAAG
Found at i:105994985 original size:27 final size:27
Alignment explanation
Indices: 105994858--105995054 Score: 112
Period size: 27 Copynumber: 7.0 Consensus size: 27
105994848 TAGGCATAAT
* * * *
105994858 ACAATAGTAATAGTAATTACAAAAATG
1 ACAATAGTAATAATAATAATAAAAATA
* *
105994885 ATAATAGTAATAA-AATAAGTTAATAATA
1 ACAATAGTAATAATAATAA--TAAAAATA
* * *
105994913 ATAATAACCGTAGTAGTAATAATAAAAAT-
1 ACAAT-A--GTAATAATAATAATAAAAATA
* * *
105994942 ATAATAGTAATAATAATACTAAATATA
1 ACAATAGTAATAATAATAATAAAAATA
*
105994969 ACAATAGTAATATTAATAATAAAAATAA
1 ACAATAGTAATAATAATAATAAAAAT-A
** * * *
105994997 TAGCAATAAAAATAAAAATAATAACAATG
1 -A-CAATAGTAATAATAATAATAAAAATA
*
105995026 ACAATAAAG-AATAATAATAATAATAATA
1 ACAAT--AGTAATAATAATAATAAAAATA
105995054 A
1 A
105995055 TGATAATGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 23
0.72 0.15 0.13
Matches are distributed among these distances:
26 20 0.15
27 37 0.28
28 30 0.23
29 8 0.06
30 26 0.20
31 5 0.04
32 5 0.04
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (27 bp):
ACAATAGTAATAATAATAATAAAAATA
Found at i:105995268 original size:22 final size:22
Alignment explanation
Indices: 105995240--105995301 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
105995230 GTAATAAATA
105995240 AATAATAATAGTAAATAATAAG
1 AATAATAATAGTAAATAATAAG
*
105995262 AATAATAATAG-AAATAAAAAAG
1 AATAATAATAGTAAAT-AATAAG
* *
105995284 ATTAATAATAAT-AATAAT
1 AATAATAATAGTAAATAAT
105995302 GATGATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.18
22 28 0.82
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
AATAATAATAGTAAATAATAAG
Found at i:105995357 original size:47 final size:45
Alignment explanation
Indices: 105995306--105995404 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 45
105995296 AATAATGATG
* *
105995306 ATAATAGTAATAGAAAATAAAAAGATA-GTAGTAATATAGAAATAGTA
1 ATAATAGTAATA-AAAACAAAAAGA-ACGTAATAATA-AGAAATAGTA
* * *
105995353 ATAATAGTCATAAAAACAAAAATAACGGTAATAATAATAAATAGTA
1 ATAATAGTAATAAAAACAAAAAGAAC-GTAATAATAAGAAATAGTA
105995399 ATAATA
1 ATAATA
105995405 ACAATAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
45 1 0.02
46 25 0.56
47 19 0.42
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (45 bp):
ATAATAGTAATAAAAACAAAAAGAACGTAATAATAAGAAATAGTA
Found at i:105995468 original size:3 final size:3
Alignment explanation
Indices: 105994885--105995449 Score: 130
Period size: 3 Copynumber: 188.0 Consensus size: 3
105994875 TACAAAAATG
* ** * * *
105994885 ATA ATA GTA ATA A-A ATA AGTTA ATA ATA ATA ATA ACC GTA GTA GTA
1 ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
105994931 ATA ATA AAA AT- ATA ATA GTA ATA ATA ATA CTA A-A TATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * ** * * *
105994975 GTA ATA TTA ATA ATA AAA ATA ATA GCA ATA AAA ATA AAA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
105995023 ATG ACA ATAA AGA ATA ATA ATA ATA ATA ATA ATG ATA ATG ATGA A-A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
* ** * * * *
105995069 AT- ATGA GTA ACC ATA AT- CTCA A-A TTT ATT ATAA ATA ATAA ATA ATA
1 ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA AT-A ATA AT-A ATA ATA
* * * * * ** *
105995115 ATA ATA ATG ATA GTC TTA ATA ATG ATA ACG ACA ATA A-A A-A AGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
** * * *
105995159 GGA ATA ATA ATG ATA ATA TATA A-A ATA ATA ATA ATT GTA A-A A-A
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** ** *
105995202 GATA ATA AGA ATA GTA GCA ATA ATA AGG GTA ATAA ATAA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A ATA ATA ATA
* * * *
105995250 GTAA ATA ATA AGA ATA ATA ATA GA-A ATA A-A A-A AGA TTA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
105995294 ATA ATA ATG ATG ATA ATA GTA ATA GAAA ATA A-A A-A GATA GTA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA ATA
* * * * * * ** *
105995339 AT- ATA GA-A ATA GTA ATA ATA GTC ATA AAA ACA AAA ATA ACG GTA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
105995383 ATA ATA ATAA ATA GTA ATA ATA ACA ATA AT- ATAA ATA ATA AT- ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
105995428 CAT- ATGA ATA ATA ATA ATA ATA
1 -ATA AT-A ATA ATA ATA ATA ATA
105995450 GCAATAATTT
Statistics
Matches: 398, Mismatches: 124, Indels: 80
0.66 0.21 0.13
Matches are distributed among these distances:
2 37 0.09
3 320 0.80
4 38 0.10
5 3 0.01
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:105995821 original size:24 final size:24
Alignment explanation
Indices: 105995794--105995860 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
105995784 GGTTAAGGCT
*
105995794 CAAAACGACGTCGTTTTGGTGACC
1 CAAAATGACGTCGTTTTGGTGACC
105995818 CAAAATGACGTCGTTTTGGTGACC
1 CAAAATGACGTCGTTTTGGTGACC
*
105995842 CAAAATGACGTTGTTTTGG
1 CAAAATGACGTCGTTTTGG
105995861 GGGGCCATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (24 bp):
CAAAATGACGTCGTTTTGGTGACC
Found at i:105996159 original size:20 final size:20
Alignment explanation
Indices: 105996131--105996176 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
105996121 AAGAGATTCG
* *
105996131 AAAAGAAAAGAAAGAAAATA
1 AAAAAAAAAGAAAGAAAAGA
105996151 AAAAAAAAAGAAAGAAAAGA
1 AAAAAAAAAGAAAGAAAAGA
105996171 AAAAAA
1 AAAAAA
105996177 TATATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAGAAAGAAAAGA
Found at i:105996160 original size:16 final size:16
Alignment explanation
Indices: 105996130--105996176 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
105996120 AAAGAGATTC
105996130 GAAAAGAAAAGAAAGAAA
1 GAAAA-AAAA-AAAGAAA
105996148 -ATAAAAAAAAAAGAAA
1 GA-AAAAAAAAAAGAAA
105996164 GAAAAGAAAAAAA
1 GAAAA-AAAAAAA
105996177 TATATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 10 0.38
17 13 0.50
18 3 0.12
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (16 bp):
GAAAAAAAAAAAGAAA
Found at i:105998823 original size:246 final size:246
Alignment explanation
Indices: 105998382--105999090 Score: 1283
Period size: 246 Copynumber: 2.9 Consensus size: 246
105998372 ATTGCAAGAA
*
105998382 ATTCAAGAGATTCACAAATCATTACTGCATTAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
*
105998447 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTTCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * *
105998512 TGCTATTATTTCCTCCAGTTGGTCACAACACGAAACCTCAAGCTGTTTTAAATTTAGCGGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
105998577 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
196 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
*
105998628 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTTCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
105998693 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * * * *
105998758 TGCTAATATTTCCTCCAGTTGGTCACATTTCGAAACCTCGAGCTGTTCTAAATTTGGCAGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
*
105998823 AGTTTGGAGAGAACAACCTTTTTGATTCCGGACAAGATATTACATCAAGCC
196 AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
105998874 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
1 ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
105998939 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
66 CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
* * *
105999004 TGCTATTATTTCCTCCAGTTGGTTACAATCCGAAACCTTAAGCTGTTCTAAATTTGGCGGCACAC
131 TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
105999069 AGTTTGGAGAGAACAACCTTTT
196 AGTTTGGAGAGAACAACCTTTT
105999091 CGTATATTTT
Statistics
Matches: 443, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
246 443 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (246 bp):
ATTCAAGAGATTCACAAATCATTACTGCATCAACACTGCAAATGCTCTTCAATTCAGGTAAAGAA
CACAATGTCATTTTCTTTAATCGTGGAAGACAAAATTCCATGGTAACCCTTCCTCTTTCCTCTGA
TGCTATTATTTCCTCCAGTTGGTCACAATACGAAACCTCAAGCTGTTCTAAATTTGGCGGCACAC
AGTTTGGAGAGAACAACCTTTTTAATTCCGGACAAGATATTACATCAAGCC
Found at i:106008667 original size:6 final size:6
Alignment explanation
Indices: 106008656--106008680 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
106008646 GTATAAAAAG
106008656 TAAGCA TAAGCA TAAGCA TAAGCA T
1 TAAGCA TAAGCA TAAGCA TAAGCA T
106008681 TAATATTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (6 bp):
TAAGCA
Found at i:106016262 original size:15 final size:15
Alignment explanation
Indices: 106016244--106016275 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
106016234 AATAATACTA
106016244 AATATATATATACAT
1 AATATATATATACAT
*
106016259 AATATATGTATACAT
1 AATATATATATACAT
106016274 AA
1 AA
106016276 CATGTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AATATATATATACAT
Found at i:106016324 original size:31 final size:32
Alignment explanation
Indices: 106016289--106016357 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
106016279 GTATAAAATG
*
106016289 AACATATACAACATATATTAGA-AATACTA-AT
1 AACATATAAAACATATATTA-ATAATACTACAT
*
106016320 AACATAAAAAACATATATTAATAATACTACAT
1 AACATATAAAACATATATTAATAATACTACAT
106016352 AA-ATAT
1 AACATAT
106016358 GTACATATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 1 0.03
31 28 0.85
32 4 0.12
ACGTcount: A:0.58, C:0.12, G:0.01, T:0.29
Consensus pattern (32 bp):
AACATATAAAACATATATTAATAATACTACAT
Found at i:106016533 original size:22 final size:20
Alignment explanation
Indices: 106016500--106016541 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
106016490 CTAATAACAT
106016500 TAAAAATATATACATAATATA
1 TAAAAATATATACAT-ATATA
106016521 TAAAATATATATACATATATA
1 TAAAA-ATATATACATATATA
106016542 CATATATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAAATATATACATATATA
Found at i:106016541 original size:30 final size:28
Alignment explanation
Indices: 106016504--106016569 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 28
106016494 TAACATTAAA
106016504 AATATATACATAATATATA-AAAT-ATATAT
1 AATATATACAT-ATAT-TAGAAATGATA-AT
106016533 ACATATATACATATATTAGAAATGATAAT
1 A-ATATATACATATATTAGAAATGATAAT
106016562 AATATATA
1 AATATATA
106016570 AAAAAACTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
28 9 0.26
29 12 0.35
30 13 0.38
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (28 bp):
AATATATACATATATTAGAAATGATAAT
Found at i:106016663 original size:25 final size:26
Alignment explanation
Indices: 106016635--106016685 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
106016625 TGTTAGAAAT
106016635 ATAC-AATATAG-TATTAGAAATATAC
1 ATACAAATATAGTTATTA-AAATATAC
106016660 ATACATAATATAGTTATTAAAATATA
1 ATACA-AATATAGTTATTAAAATATA
106016686 TATATACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 4 0.17
27 14 0.61
28 5 0.22
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (26 bp):
ATACAAATATAGTTATTAAAATATAC
Found at i:106016696 original size:29 final size:27
Alignment explanation
Indices: 106016639--106016767 Score: 113
Period size: 29 Copynumber: 4.7 Consensus size: 27
106016629 AGAAATATAC
*
106016639 AATATAGTATTAGAAATATACATACAT
1 AATATAGTATTAAAAATATACATACAT
*
106016666 AATATAGTTATTAAAATATATATATACAT
1 AATATAG-TATTAAAA-ATATACATACAT
* * * *
106016695 AAGATAATATGTAAGAAAAAATACATAAAT
1 AATATAGTAT-T-A-AAAATATACATACAT
* *
106016725 AATATAGTATTGAAAATAT--GTACAT
1 AATATAGTATTAAAAATATACATACAT
106016750 AATATA-TA-TAAAAATATA
1 AATATAGTATTAAAAATATA
106016768 ATATTAAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
23 8 0.10
24 2 0.02
25 10 0.12
27 13 0.16
28 10 0.12
29 18 0.22
30 18 0.22
31 3 0.04
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.33
Consensus pattern (27 bp):
AATATAGTATTAAAAATATACATACAT
Found at i:106016777 original size:14 final size:13
Alignment explanation
Indices: 106016750--106016819 Score: 51
Period size: 14 Copynumber: 5.5 Consensus size: 13
106016740 ATATGTACAT
106016750 AATAT-ATATAAA
1 AATATAATATAAA
106016762 AATATAATATTAAA
1 AATATAATA-TAAA
* *
106016776 AATAT-ATA-CAT
1 AATATAATATAAA
106016787 AATATAA-AGTTAAA
1 AATATAATA--TAAA
106016801 AATA-ATATATAAA
1 AATATA-ATATAAA
106016814 AATATA
1 AATATA
106016820 TACATAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
11 7 0.16
12 6 0.13
13 15 0.33
14 16 0.36
15 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (13 bp):
AATATAATATAAA
Found at i:106016799 original size:25 final size:24
Alignment explanation
Indices: 106016753--106016819 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 24
106016743 TGTACATAAT
106016753 ATATATAAAAATATAATATTAAAA
1 ATATATAAAAATATAATATTAAAA
*
106016777 ATATATACATAATATAA-AGTTAAAAATA
1 ATATATA-AAAATATAATA-TT--AAA-A
106016805 ATATATAAAAATATA
1 ATATATAAAAATATA
106016820 TACATAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
24 8 0.22
25 10 0.28
27 10 0.28
28 8 0.22
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (24 bp):
ATATATAAAAATATAATATTAAAA
Found at i:106016803 original size:62 final size:63
Alignment explanation
Indices: 106016710--106016856 Score: 140
Period size: 62 Copynumber: 2.3 Consensus size: 63
106016700 AATATGTAAG
* * * * * *
106016710 AAAAAATACATAAATAATATAGTATTGAAAATATGTACAT-AATATATATA-AAAATATAATATT
1 AAAAAATATATACATAATATAGAATTAAAAATA-ATACATAAAAATATATACAAAATAT-ATATT
* * *
106016773 -AAAAATATATACATAATATA-AAGTTAAAAATAATATATAAAAATATATACATAATATCTATT
1 AAAAAATATATACATAATATAGAA-TTAAAAATAATACATAAAAATATATACAAAATATATATT
*
106016835 AAAAGAATATACACATAATATA
1 AAAA-AATATATACATAATATA
106016857 TATGCATGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
61 5 0.07
62 39 0.57
63 9 0.13
64 16 0.23
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (63 bp):
AAAAAATATATACATAATATAGAATTAAAAATAATACATAAAAATATATACAAAATATATATT
Found at i:106016823 original size:38 final size:37
Alignment explanation
Indices: 106016719--106016829 Score: 143
Period size: 37 Copynumber: 2.9 Consensus size: 37
106016709 GAAAAAATAC
* * * *
106016719 ATAAATAATATAGTATTGAAAATATGTACATAATATAT
1 ATAAA-AATATAATATTAAAAATATATACATAATATAA
106016757 ATAAAAATATAATATTAAAAATATATACATAATATAA
1 ATAAAAATATAATATTAAAAATATATACATAATATAA
*
106016794 AGTTAAAA-ATAATATATAAAAATATATACATAATAT
1 A-TAAAAATATAATAT-TAAAAATATATACATAATAT
106016830 CTATTAAAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.55
38 30 0.45
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (37 bp):
ATAAAAATATAATATTAAAAATATATACATAATATAA
Found at i:106017034 original size:3 final size:3
Alignment explanation
Indices: 106017028--106017102 Score: 51
Period size: 3 Copynumber: 23.7 Consensus size: 3
106017018 ATATGAAGAT
* * * * * *
106017028 TAA TAA TAG TAA TAG TAA CAA TAA TGA TAA TATA TATG TACA TGAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA
*
106017077 TAC TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
106017103 CTGAAATAAT
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
3 46 0.82
4 9 0.16
5 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:106017091 original size:6 final size:6
Alignment explanation
Indices: 106016983--106017102 Score: 52
Period size: 6 Copynumber: 19.8 Consensus size: 6
106016973 TAGTAAAAAC
* * * *
106016983 TAATAA T-ATAA -AATAA AAATAA -AGA-AA TAACAA TAAT-A TGAAGAT
1 TAATAA TAATAA TAATAA TAATAA TA-ATAA TAATAA TAATAA T-AATAA
* * * * * * *
106017028 TAATAA TAGTAA TAGTAA CAATAA TGATAA TATATATG TACATGAA TAGTAC
1 TAATAA TAATAA TAATAA TAATAA TAATAA TA-ATA-A TA-AT-AA TAATAA
106017080 TAATAA TAATAA TAATAA TAATA
1 TAATAA TAATAA TAATAA TAATA
106017103 CTGAAATAAT
Statistics
Matches: 86, Mismatches: 18, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
5 14 0.16
6 60 0.70
7 5 0.06
8 6 0.07
9 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.30
Consensus pattern (6 bp):
TAATAA
Found at i:106017092 original size:9 final size:9
Alignment explanation
Indices: 106016983--106017102 Score: 52
Period size: 9 Copynumber: 13.2 Consensus size: 9
106016973 TAGTAAAAAC
106016983 TAATAAT-A
1 TAATAATAA
106016991 TAA-AATAA
1 TAATAATAA
*
106016999 AAATAA-AGA
1 TAATAATA-A
*
106017008 -AATAACAA
1 TAATAATAA
106017016 TAAT-ATGAA
1 TAATAAT-AA
* *
106017025 GATTAATAA
1 TAATAATAA
* *
106017034 TAGTAATAG
1 TAATAATAA
*
106017043 TAACAATAA
1 TAATAATAA
*
106017052 TGATAATATA
1 TAATAATA-A
*
106017062 TATGTACATGAA
1 TA-ATA-AT-AA
* *
106017074 TAGTACTAA
1 TAATAATAA
106017083 TAATAATAA
1 TAATAATAA
106017092 TAATAATAA
1 TAATAATAA
106017101 TA
1 TA
106017103 CTGAAATAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
7 3 0.04
8 14 0.17
9 51 0.61
10 5 0.06
11 5 0.06
12 5 0.06
13 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.30
Consensus pattern (9 bp):
TAATAATAA
Found at i:106019992 original size:35 final size:35
Alignment explanation
Indices: 106019953--106020021 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
106019943 ACTTGCCTCT
106019953 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
106019988 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
106020022 TCACACACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.51, G:0.12, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:106020863 original size:3 final size:3
Alignment explanation
Indices: 106020855--106020900 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
106020845 GTTATTTTCA
106020855 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
106020901 GCACATTAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:106021222 original size:22 final size:23
Alignment explanation
Indices: 106021194--106021248 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
106021184 AATTTTTTTA
106021194 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
106021216 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
106021240 -TA-ATATTAT
1 ATATATATTAT
106021249 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:106039381 original size:22 final size:24
Alignment explanation
Indices: 106039339--106039389 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
106039329 AATTTCATTA
106039339 TATTAGGATAATATTAAGATTT-T
1 TATTAGGATAATATTAAGATTTAT
*
106039362 TATTA-GATAA-ATTTAGGATTTAT
1 TATTAGGATAATA-TTAAGATTTAT
106039385 TATTA
1 TATTA
106039390 TCTTTAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 1 0.04
22 13 0.52
23 11 0.44
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (24 bp):
TATTAGGATAATATTAAGATTTAT
Found at i:106046677 original size:21 final size:21
Alignment explanation
Indices: 106046648--106046693 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
106046638 ACTTTCTGCT
*
106046648 CTGCTGCTGCCTCCTTCGCTG
1 CTGCCGCTGCCTCCTTCGCTG
106046669 CTGCCGCTGCCTCCTTCGCTG
1 CTGCCGCTGCCTCCTTCGCTG
106046690 CTGC
1 CTGC
106046694 ATCTGCTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.00, C:0.46, G:0.24, T:0.30
Consensus pattern (21 bp):
CTGCCGCTGCCTCCTTCGCTG
Found at i:106046699 original size:21 final size:21
Alignment explanation
Indices: 106046648--106046699 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
106046638 ACTTTCTGCT
*
106046648 CTGCTGCTGCCTCCTTCGCTG
1 CTGCAGCTGCCTCCTTCGCTG
*
106046669 CTGCCGCTGCCTCCTTCGCTG
1 CTGCAGCTGCCTCCTTCGCTG
*
106046690 CTGCATCTGC
1 CTGCAGCTGC
106046700 TCTAAGTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.02, C:0.44, G:0.23, T:0.31
Consensus pattern (21 bp):
CTGCAGCTGCCTCCTTCGCTG
Found at i:106049727 original size:24 final size:24
Alignment explanation
Indices: 106049695--106049747 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
106049685 AACGTTTTAT
106049695 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
106049719 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
106049743 AATAT
1 AATAT
106049748 TATAACATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:106054767 original size:210 final size:210
Alignment explanation
Indices: 106054405--106054810 Score: 573
Period size: 210 Copynumber: 1.9 Consensus size: 210
106054395 AAGACTACTC
* * * * **
106054405 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGACCCATCTAAATAAAGCTCTAGCAGGCA
1 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAACA
* *
106054470 TTCCATTTTGCCATCAATCTCTGGAAACCTTTTAAGATTGGAGCAACCTGAAAGAATTAACTTTT
66 TTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTTT
* * * * *
106054535 CAAGAGATTCCATTCCAATTTTGATTGGAAGACTCC-CAAGACTTTTGCTGTCTTTTAAATTCAA
131 CAAGAGATACCATTCCAATTTTGATTGGAAAACTCCTC-AGACTTTTGCAGCCTCTTAAATTCAA
106054599 AACTTTAAGTCTTCCA
195 AACTTTAAGTCTTCCA
* *** *
106054615 AGATTTCCCATTGAAGA-AGGTAGCTCTTTAATGTTTGTCCCATCAAAACAAAGCTCCAACAAAC
1 AGATTTCCAATTGAA-ATAGGTAGCTCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAAC
* * *
106054679 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGTTTTGAGCAACCTGAAAGAATTAACTTT
65 ATTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTT
* *
106054744 TCAAGAGATAGCATTCCAATTTTGGTTGGAAAACTCCTCAGACTTTTGCAGCCTCTTAAATTCAA
130 TCAAGAGATACCATTCCAATTTTGATTGGAAAACTCCTCAGACTTTTGCAGCCTCTTAAATTCAA
106054809 AA
195 AA
106054811 GCTTAAGCCT
Statistics
Matches: 171, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
210 169 0.99
211 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (210 bp):
AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAACA
TTCCATTTTCCCATCAATCTCTGGAAACCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTTT
CAAGAGATACCATTCCAATTTTGATTGGAAAACTCCTCAGACTTTTGCAGCCTCTTAAATTCAAA
ACTTTAAGTCTTCCA
Found at i:106068444 original size:40 final size:40
Alignment explanation
Indices: 106068389--106068471 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
106068379 TTCATGCACA
* *
106068389 CAAGAATTCATGCACATAAGTTGT-TCGGGTAAAGTACGTG
1 CAAGAATCCATGCACATAAGTT-TCCCGGGTAAAGTACGTG
106068429 CAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTACGTG
1 CAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTACGTG
106068469 CAA
1 CAA
106068472 CTGAAGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTACGTG
Found at i:106071269 original size:40 final size:40
Alignment explanation
Indices: 106071210--106071292 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
106071200 TTCATGCACA
*
106071210 CAAGAATTCATGCACATAAGTTGTC-CGGGTAAAGTACGTG
1 CAAGAATCCATGCACATAAGTT-TCTCGGGTAAAGTACGTG
*
106071250 CAAGAATCCATGCATATAAGTTTCTCGGGTAAAGTACGTG
1 CAAGAATCCATGCACATAAGTTTCTCGGGTAAAGTACGTG
106071290 CAA
1 CAA
106071293 CTGAAGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAGAATCCATGCACATAAGTTTCTCGGGTAAAGTACGTG
Found at i:106082207 original size:210 final size:207
Alignment explanation
Indices: 106081726--106082270 Score: 671
Period size: 210 Copynumber: 2.6 Consensus size: 207
106081716 CTCTTGCAAG
106081726 CATTCCATTTTGCC-ATCAATCTCTGGAAAGCTTTTAAGATTTGAGCAACCTGAAAGAATTAACT
1 CATTCCATTTT-CCTATCAATCTCTGGAAAGCTTTTAAGATTTGAGCAACCTGAAAGAATTAACT
*
106081790 TTTCAAGGGATTCCA-TCCAATTTTGATTGGAAGACGT-CTAAGACTTTTGCAGTCT-T---TTC
65 TTTCAAGAGATTCCATTCCAATTTTGATTGGAAGAC-TCCTAAGACTTTTGCAGTCTCTAAATTC
* * * *
106081849 AAAACTTTAAGTCTTTTGAGACTTTCGATTAAAGAAGATCACTCTAATGTTTGTCCTATCTAAAT
129 AAAACTTTAAGTCTTCTGAGACTTTCGATTAAAGAAGATCACTCTAATATTTGTCCTATCAAAAC
* * **
106081914 AAAGATCTAGCAGG
194 AAAGATCCAACAAA
* * * * * *
106081928 CATTCTATTTTGCTATCAATCTCTGGAAAGATTTTAAGATTGGAGCAACCTGAAAGAATCAAATT
1 CATTCCATTTTCCTATCAATCTCTGGAAAGCTTTTAAGATTTGAGCAACCTGAAAGAATTAACTT
106081993 TTCAAGAGA-TCTCATTCCAATTTTGATTGGAAGACTCCTAAGACTTTTGCAGTCTTCTAAATTC
66 TTCAAGAGATTC-CATTCCAATTTTGATTGGAAGACTCCTAAGACTTTTGCAGTC-TCTAAATTC
* * * * *
106082057 AAAACTTTATGTCTTCTGAGA-TTTACGATTGAAGAAGGTAGATCTTTAATATTTGTTCC-ATCA
129 AAAACTTTAAGTCTTCTGAGACTTT-CGATTAAAGAAGAT-CA-CTCTAATATTTG-TCCTATCA
*
106082120 AAACAAAGCTCCAACAAA
190 AAACAAAGATCCAACAAA
* *
106082138 CATTCCATTTTCCTATCAATCTCTGGAAAGCTTTGAAGTTTTGAGCAACCTGAAAGAATTAACTT
1 CATTCCATTTTCCTATCAATCTCTGGAAAGCTTTTAAGATTTGAGCAACCTGAAAGAATTAACTT
* * * * *
106082203 TTCAAAAGATTCCATACCAATTTTTG-TTGGAAAACTCCTCAGACTTTTGCAGCCTCTTAAATTC
66 TTCAAGAGATTCCATTCCAA-TTTTGATTGGAAGACTCCTAAGACTTTTGCAGTCTC-TAAATTC
106082267 AAAA
129 AAAA
106082271 GCTTAAGCCT
Statistics
Matches: 293, Mismatches: 34, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
201 3 0.01
202 68 0.23
203 37 0.13
204 1 0.00
205 1 0.00
207 3 0.01
208 34 0.12
209 3 0.01
210 133 0.45
211 10 0.03
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (207 bp):
CATTCCATTTTCCTATCAATCTCTGGAAAGCTTTTAAGATTTGAGCAACCTGAAAGAATTAACTT
TTCAAGAGATTCCATTCCAATTTTGATTGGAAGACTCCTAAGACTTTTGCAGTCTCTAAATTCAA
AACTTTAAGTCTTCTGAGACTTTCGATTAAAGAAGATCACTCTAATATTTGTCCTATCAAAACAA
AGATCCAACAAA
Found at i:106085047 original size:7 final size:7
Alignment explanation
Indices: 106085035--106085059 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
106085025 ACGGCTTGTA
106085035 TGCATGC
1 TGCATGC
106085042 TGCATGC
1 TGCATGC
106085049 TGCATGC
1 TGCATGC
106085056 TGCA
1 TGCA
106085060 GCAACATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (7 bp):
TGCATGC
Found at i:106086241 original size:210 final size:210
Alignment explanation
Indices: 106085879--106086284 Score: 580
Period size: 210 Copynumber: 1.9 Consensus size: 210
106085869 AAGACTGCTC
* * * * *
106085879 AGATTTCCAATTGAAATAGGTAGCTCTTTAATGCCCGACCCATCAAAATAAAGCTCTAGCAAGCA
1 AGATTTCCAATTGAAATAGGTAGATCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAACA
* * * *
106085944 TTCCATTTTGCCATCAATCTCTGGAAAGCTTTTAAGATTGGTGCAACCTGAGAGAATTAACTTTT
66 TTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTTT
* * * * *
106086009 CAAGAGATTCCATTCCAATTTTGATTGGAAGACTCTTAAGACTTTTACAGTCTTTTAAATTCAAA
131 CAAGAGATTCCATACCAATTTTGATTGGAAAACTCCTAAGACTTTTACAGCCTCTTAAATTCAAA
106086074 ACTTTAAGTCTTCTG
196 ACTTTAAGTCTTCTG
* *** *
106086089 AGATTTCCGATTGAAGA-AGGTAGATCTTTAATGTTTGTCCCATCAAAACAAAGCTCCAACAAAC
1 AGATTTCCAATTGAA-ATAGGTAGATCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAAC
* *
106086153 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGTTTTGAGCAACCTGAAAGAATTAACTTT
65 ATTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTT
* * *
106086218 TCAAGAGATTCCATACCAATTTTGGTTGGAAAACTCCTCAGACTTTTGCAGCCTCTTAAATTCAA
130 TCAAGAGATTCCATACCAATTTTGATTGGAAAACTCCTAAGACTTTTACAGCCTCTTAAATTCAA
106086283 AA
195 AA
106086285 GCTTAAGCCT
Statistics
Matches: 171, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
210 170 0.99
211 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (210 bp):
AGATTTCCAATTGAAATAGGTAGATCTTTAATGCCCGACCCATCAAAACAAAGCTCCAACAAACA
TTCCATTTTCCCATCAATCTCTGGAAAGCTTTGAAGATTGGAGCAACCTGAAAGAATTAACTTTT
CAAGAGATTCCATACCAATTTTGATTGGAAAACTCCTAAGACTTTTACAGCCTCTTAAATTCAAA
ACTTTAAGTCTTCTG
Found at i:106091565 original size:11 final size:11
Alignment explanation
Indices: 106091549--106091590 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
106091539 AGGTACGGGT
106091549 AGGTATGGGAA
1 AGGTATGGGAA
*
106091560 AGGTATGGGTA
1 AGGTATGGGAA
*
106091571 AGGTATGGGCA
1 AGGTATGGGAA
*
106091582 AGGAATGGG
1 AGGTATGGG
106091591 TAGATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:106091577 original size:22 final size:22
Alignment explanation
Indices: 106091538--106091592 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
106091528 TGACCTTTCC
*
106091538 AAGGTACGGGT-AGGTATGGGA
1 AAGGTATGGGTAAGGTATGGGA
*
106091559 AAGGTATGGGTAAGGTATGGGC
1 AAGGTATGGGTAAGGTATGGGA
*
106091581 AAGGAATGGGTA
1 AAGGTATGGGTA
106091593 GATTCTAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 10 0.33
22 20 0.67
ACGTcount: A:0.31, C:0.04, G:0.45, T:0.20
Consensus pattern (22 bp):
AAGGTATGGGTAAGGTATGGGA
Found at i:106092672 original size:19 final size:19
Alignment explanation
Indices: 106092637--106092682 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
106092627 AATTGTACAT
*
106092637 TAAATTAAAGTTCATAT-A
1 TAAATTTAAGTTCATATCA
*
106092655 TAAATTTAAGATTTATATCA
1 TAAATTTAAG-TTCATATCA
106092675 -AAATTTAA
1 TAAATTTAA
106092683 TAAAAATACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (19 bp):
TAAATTTAAGTTCATATCA
Found at i:106093451 original size:16 final size:16
Alignment explanation
Indices: 106093422--106093472 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
106093412 TAACAAGCAC
*
106093422 AATT-AATAAATTAAA
1 AATTAAATAATTTAAA
106093437 AATTAAATAATTTAAA
1 AATTAAATAATTTAAA
*
106093453 ATTTTAAA-AATTTAAA
1 A-ATTAAATAATTTAAA
106093469 AATT
1 AATT
106093473 TTCAAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 6 0.19
16 20 0.65
17 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTAAATAATTTAAA
Found at i:106093470 original size:17 final size:17
Alignment explanation
Indices: 106093439--106093489 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
106093429 AAATTAAAAA
106093439 TTAAATAATTT-AAAATT
1 TTAAA-AATTTAAAAATT
106093456 TTAAAAATTTAAAAATT
1 TTAAAAATTTAAAAATT
*
106093473 TTCAAAAATTGAAAAAT
1 TT-AAAAATTTAAAAAT
106093490 AAAATTACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 5 0.16
17 13 0.42
18 13 0.42
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (17 bp):
TTAAAAATTTAAAAATT
Found at i:106093473 original size:8 final size:8
Alignment explanation
Indices: 106093432--106093489 Score: 64
Period size: 8 Copynumber: 7.0 Consensus size: 8
106093422 AATTAATAAA
106093432 TTAAAAA-
1 TTAAAAAT
106093439 TTAAATAAT
1 TTAAA-AAT
*
106093448 TTAAAATT
1 TTAAAAAT
106093456 TTAAAAAT
1 TTAAAAAT
106093464 TTAAAAATT
1 TTAAAAA-T
106093473 TTCAAAAAT
1 TT-AAAAAT
*
106093482 TGAAAAAT
1 TTAAAAAT
106093490 AAAATTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
7 5 0.11
8 24 0.55
9 10 0.23
10 5 0.11
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (8 bp):
TTAAAAAT
Found at i:106095416 original size:19 final size:19
Alignment explanation
Indices: 106095392--106095431 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
106095382 TAATAATGAA
106095392 ATTATAGAAATTGTTGCAT
1 ATTATAGAAATTGTTGCAT
106095411 ATTATAGAAATTGTTGCAT
1 ATTATAGAAATTGTTGCAT
106095430 AT
1 AT
106095432 GAACATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (19 bp):
ATTATAGAAATTGTTGCAT
Found at i:106101335 original size:19 final size:19
Alignment explanation
Indices: 106101311--106101351 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
106101301 TATCTGATTA
106101311 AATTAAATAAATTATTAAG
1 AATTAAATAAATTATTAAG
106101330 AATTAAATAAATTATTAAG
1 AATTAAATAAATTATTAAG
106101349 AAT
1 AAT
106101352 ATTAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AATTAAATAAATTATTAAG
Found at i:106101664 original size:25 final size:25
Alignment explanation
Indices: 106101619--106101670 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
106101609 AATTGGCTTG
* *
106101619 ATTTTGTTTTATATTTTTGTAATAT
1 ATTTTATTTTATATTTATGTAATAT
*
106101644 ATTTTATTTTAT-TTGTATGTATTAT
1 ATTTTATTTTATATT-TATGTAATAT
106101669 AT
1 AT
106101671 AATTTATATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (25 bp):
ATTTTATTTTATATTTATGTAATAT
Found at i:106104272 original size:19 final size:19
Alignment explanation
Indices: 106104248--106104287 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
106104238 TGAGTTGAAA
106104248 TAACTATTAAATTAAAAAT
1 TAACTATTAAATTAAAAAT
106104267 TAACTATTAAATTAAAAAT
1 TAACTATTAAATTAAAAAT
106104286 TA
1 TA
106104288 TATAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
TAACTATTAAATTAAAAAT
Found at i:106104622 original size:85 final size:86
Alignment explanation
Indices: 106104465--106104629 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 86
106104455 ATTAAACACC
* * * * *
106104465 TTTTTTTTCGCTCAATTGAGATTTTGAACTTTTAAAATGCATAAAAAAGGCTCTCAAACTTCTTT
1 TTTTTTTTCACTCAATTGAGATCTTGAACTTTTAAAATGCATAAAAAAGACCCTCAAAATTCTTT
106104530 AAAAAAAATTAAGTCCCTACT
66 AAAAAAAATTAAGTCCCTACT
* *
106104551 TTTTTTTTCACTCAATTGAG-TACTTGAAC-TTTAAAATGCATCAAAAAGACCCTCAAAATTTTT
1 TTTTTTTTCACTCAATTGAGAT-CTTGAACTTTTAAAATGCATAAAAAAGACCCTCAAAA--TTC
*
106104614 TTTTAAAAAAATTAAG
63 TTTAAAAAAAATTAAG
106104630 CCCGTGCTCT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
85 26 0.38
86 25 0.37
87 17 0.25
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.39
Consensus pattern (86 bp):
TTTTTTTTCACTCAATTGAGATCTTGAACTTTTAAAATGCATAAAAAAGACCCTCAAAATTCTTT
AAAAAAAATTAAGTCCCTACT
Found at i:106105039 original size:20 final size:17
Alignment explanation
Indices: 106105010--106105080 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 17
106105000 TTTTGTACAT
*
106105010 TTTTTTATATTTCTATATA
1 TTTTTAATATTT-TATA-A
*
106105029 TTTTATAATATTTTACAA
1 TTTT-TAATATTTTATAA
106105047 -TTTTAATATTTTTTATAAA
1 TTTTTAATA--TTTTAT-AA
106105066 TTTTTAATATTTTAT
1 TTTTTAATATTTTAT
106105081 TTTTATTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 5 0.11
17 3 0.07
18 12 0.27
19 9 0.20
20 15 0.34
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTAATATTTTATAA
Found at i:106105043 original size:10 final size:10
Alignment explanation
Indices: 106105016--106105080 Score: 59
Period size: 9 Copynumber: 6.9 Consensus size: 10
106105006 ACATTTTTTT
106105016 ATATTTCTAT-
1 ATATTT-TATA
106105026 ATATTTTATA
1 ATATTTTATA
*
106105036 ATATTTTACA
1 ATATTTTATA
*
106105046 AT-TTTAAT-
1 ATATTTTATA
*
106105054 ATTTTTTATA
1 ATATTTTATA
106105064 A-ATTTT-TA
1 ATATTTTATA
106105072 ATATTTTAT
1 ATATTTTAT
106105081 TTTTATTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
8 5 0.11
9 21 0.47
10 19 0.42
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (10 bp):
ATATTTTATA
Found at i:106105049 original size:18 final size:19
Alignment explanation
Indices: 106104991--106105080 Score: 69
Period size: 18 Copynumber: 4.8 Consensus size: 19
106104981 TTTTTACGAA
* * *
106104991 TTTATAAAATTTTGTACAT
1 TTTATAATATTTTATAAAT
* * *
106105010 TTTTTTATATTTCTATATAT
1 TTTATAATATTT-TATAAAT
*
106105030 TTTATAATATTTTA-CAAT
1 TTTATAATATTTTATAAAT
*
106105048 TTTA-ATATTTTTTATAAAT
1 TTTATA-ATATTTTATAAAT
106105067 TTT-TAATATTTTAT
1 TTTATAATATTTTAT
106105081 TTTTATTAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
17 1 0.02
18 21 0.38
19 18 0.33
20 15 0.27
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (19 bp):
TTTATAATATTTTATAAAT
Found at i:106105070 original size:28 final size:27
Alignment explanation
Indices: 106105010--106105098 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 27
106105000 TTTTGTACAT
* *
106105010 TTTTTTATATTTCTATATATTTTAT-AA
1 TTTTTAATATTT-TATATTTTTTATAAA
106105037 TATTTTACA-ATTTTAATATTTTTTATAAA
1 T-TTTTA-ATATTTT-ATATTTTTTATAAA
*
106105066 TTTTTAATATTTTAT-TTTTAT-TAAA
1 TTTTTAATATTTTATATTTTTTATAAA
106105091 -TTTTAATA
1 TTTTTAATA
106105099 ACATTTGTAG
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
24 8 0.15
25 4 0.07
26 5 0.09
27 5 0.09
28 28 0.52
29 4 0.07
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTTAATATTTTATATTTTTTATAAA
Found at i:106106620 original size:18 final size:18
Alignment explanation
Indices: 106106582--106106626 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
106106572 TATTTTTCTC
*
106106582 ATAAGAAATATAAAAATT
1 ATAAAAAATATAAAAATT
106106600 ATAAAAAATCATAAAAA-T
1 ATAAAAAAT-ATAAAAATT
106106618 ATACAAAAA
1 ATA-AAAAA
106106627 CTTAACATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (18 bp):
ATAAAAAATATAAAAATT
Found at i:106108302 original size:21 final size:22
Alignment explanation
Indices: 106108276--106108320 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
106108266 GGATCATTGA
106108276 TTTTA-TTTCTTTTCTTTTTAG
1 TTTTATTTTCTTTTCTTTTTAG
* *
106108297 TTTTATTTTTTTTTGTTTTTAG
1 TTTTATTTTCTTTTCTTTTTAG
106108319 TT
1 TT
106108321 GCTCTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.09, C:0.04, G:0.07, T:0.80
Consensus pattern (22 bp):
TTTTATTTTCTTTTCTTTTTAG
Found at i:106111838 original size:16 final size:17
Alignment explanation
Indices: 106111801--106111848 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
106111791 AATTTATATA
106111801 TAAATGAATATATAAAT
1 TAAATGAATATATAAAT
**
106111818 TAAATGAATA-ATATTT
1 TAAATGAATATATAAAT
*
106111834 TAAATG-TTATATAAA
1 TAAATGAATATATAAA
106111849 AAAACAATGT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 2 0.08
16 13 0.52
17 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
TAAATGAATATATAAAT
Found at i:106133392 original size:34 final size:34
Alignment explanation
Indices: 106133354--106133422 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
106133344 TGAACTAGTT
106133354 TTTGAAATTAGAAATGTTGAAAACATGACCAGAA
1 TTTGAAATTAGAAATGTTGAAAACATGACCAGAA
106133388 TTTGAAATTAGAAATGTTGAAAACATGACCAGAA
1 TTTGAAATTAGAAATGTTGAAAACATGACCAGAA
106133422 T
1 T
106133423 GGGTTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (34 bp):
TTTGAAATTAGAAATGTTGAAAACATGACCAGAA
Found at i:106134552 original size:29 final size:29
Alignment explanation
Indices: 106134510--106134570 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
106134500 CCACTGTCAA
106134510 ATTTAAACTCAAAAGCACTCAACTTAGCC
1 ATTTAAACTCAAAAGCACTCAACTTAGCC
106134539 ATTTAAACTCAAAAGCACTCAACTTAGCC
1 ATTTAAACTCAAAAGCACTCAACTTAGCC
106134568 ATT
1 ATT
106134571 CTGTGTAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (29 bp):
ATTTAAACTCAAAAGCACTCAACTTAGCC
Found at i:106136186 original size:31 final size:30
Alignment explanation
Indices: 106136119--106136187 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 30
106136109 TGATTTTAAT
106136119 TCAGTCACTCAATTTTTAAAAAATAACAAA
1 TCAGTCACTCAATTTTTAAAAAATAACAAA
* * * *
106136149 TTAGTCACT-AATGTTATTGAAAAGTGACAAA
1 TCAGTCACTCAAT-TT-TTAAAAAATAACAAA
106136180 TCAGTCAC
1 TCAGTCAC
106136188 CCATTAACAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 3 0.09
30 10 0.31
31 19 0.59
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.30
Consensus pattern (30 bp):
TCAGTCACTCAATTTTTAAAAAATAACAAA
Found at i:106136365 original size:37 final size:38
Alignment explanation
Indices: 106136322--106136396 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
106136312 TAGTCATTAA
* *
106136322 CGTTATC-GAAAGTGACAAATCAGTTACCCATTAACAT
1 CGTTATCAAAAAGTGACAAATCAGTCACCCATTAACAT
* *
106136359 CGTTATCAAAAAGTTACAAATCAGTCACTCATTAACAT
1 CGTTATCAAAAAGTGACAAATCAGTCACCCATTAACAT
106136397 TTTCCGTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 7 0.21
38 26 0.79
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (38 bp):
CGTTATCAAAAAGTGACAAATCAGTCACCCATTAACAT
Found at i:106136543 original size:29 final size:29
Alignment explanation
Indices: 106136510--106136569 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
106136500 TTTTCATCCT
** *
106136510 TATTTTTTGTTTTTTAATAAATGACCTAA
1 TATTTTTACTTTTTGAATAAATGACCTAA
**
106136539 TATTTTTACTTTTTGCGTAAATGACCTAA
1 TATTTTTACTTTTTGAATAAATGACCTAA
106136568 TA
1 TA
106136570 CATTTATACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (29 bp):
TATTTTTACTTTTTGAATAAATGACCTAA
Found at i:106138795 original size:22 final size:21
Alignment explanation
Indices: 106138760--106138835 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
106138750 AAAAGGTATC
* *
106138760 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
106138781 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
106138804 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
106138823 TGC-AATCATATCT
1 TACAAATCATATCT
106138836 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:106138852 original size:35 final size:37
Alignment explanation
Indices: 106138789--106138886 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
106138779 ATTACAAAAT
106138789 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
106138825 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
106138860 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
106138887 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:106138894 original size:17 final size:19
Alignment explanation
Indices: 106138796--106138886 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
106138786 AATCATATCT
106138796 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
106138815 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
106138833 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
106138850 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
106138869 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
106138887 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:106139305 original size:45 final size:45
Alignment explanation
Indices: 106139237--106139465 Score: 223
Period size: 45 Copynumber: 5.1 Consensus size: 45
106139227 GGAAGGCGAT
* * *
106139237 ATCTGCTATCTTTGATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
106139282 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
** * *
106139327 ATCTACT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * * * * *
106139371 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAA
* * *
106139416 ATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
106139463 ATC
1 ATC
106139466 ATTTTGGATC
Statistics
Matches: 147, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
43 6 0.04
44 44 0.30
45 67 0.46
46 1 0.01
47 18 0.12
48 5 0.03
49 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:106139534 original size:78 final size:78
Alignment explanation
Indices: 106139405--106139620 Score: 317
Period size: 78 Copynumber: 2.8 Consensus size: 78
106139395 ATGTAAACAC
* *
106139405 ATGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
106139470 TGGATCTGCTTCA
66 TGGACCTGCTTCA
* *
106139483 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
106139547 TTGGACCTGCTTCA
65 TTGGACCTGCTTCA
* * * * **
106139561 ATGAAGGTCAGATTTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAAT
106139621 TTGTTTCTTC
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
77 2 0.02
78 119 0.97
79 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGACCTGCTTCA
Found at i:106139958 original size:221 final size:220
Alignment explanation
Indices: 106139563--106140811 Score: 1094
Period size: 221 Copynumber: 5.6 Consensus size: 220
106139553 CTGCTTCAAT
* * * * * *
106139563 GAAGGTCAGATTTGCTATGTCTTTGATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
* *
106139628 TTCGATTTATTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACATG
66 TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
106139693 TGAAAGCCAAATTTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
131 TGAAAGCAAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
* * ** *
106139758 GATTTACTTCGATGTGAAGGTCCTCC
196 GATCTACTTCAATGTGAA-AACATCC
*
106139784 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCTGTTGAATATGGAGATGCCAAATCTGTTTA
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
* * **
106139849 TTCGATTTGTTCTCTGACAATATAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* *
106139914 TGAAAGCAAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
131 TGAAAGCAAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
106139979 GATCTACTTCAATGTGAAAACATCC
196 GATCTACTTCAATGTGAAAACATCC
* ** *
106140004 GAAGGTTAGATCTGCTATGTCTTCAATCTGCT-TCCGTCT-AATACAGAGATGCCAAATC---AT
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATATGGAGATGCCAAATCTGTTT
* * ** ** *** * ** ** * * **
106140064 CTTGGATCTGCTTCAATGAGGGT-CAAATCTG-C-TGT-GTCTTCGATCTGC-TCCCCGTCTAAT
65 ATTCGAT-TTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCG--TAA-
* * * * * * ***
106140124 ACA-GAG-ATGCCAAATCATCTTG-GATCTGCTTCAATGAAGGTCAAATCTACTGTGTCTTTG-A
126 ACACGTGAAAG-CAAA--ATC-TGCTATGT-CTTC---G-A--TC-TA-CTCCT-TGTCAACGCA
** * *** * * ** * ** * *
106140185 TCTGCT-CCCCGTCTAATAC-AGAGATGCCAAATC-ATCTTGGATCTACTTCAAT
177 -AAGATGCCAAATC--AT-CTTG-GAT-CTACTTCAAT-GT-GA-AAACATC--C
* * * * * * * *
106140237 GAAGGTCAGATCTGTTATGTCTTCGATCTGCTCTCTGTGGAATATGAAGGTGCCAAATCTATTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
* * *
106140302 TTCGATTTTTTCTCTGACAGTATAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * * * *
106140367 TGAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTCAACACAAGGATGCCAAATCATCTTG
131 TGAAAGCAAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
* **
106140432 GATCTACTTCGATGTGAAGGTCATCC
196 GATCTACTTCAATGTGAA-AACATCC
* *
106140458 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
* ** * *
106140523 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGTTTCAGCGTAAAAACG
66 TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
* * *
106140588 TGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAGGATGCCAAATCATCTTA
131 TGAAAGCAAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
*
106140653 GATCTACTTCGATGTGAAAACATCC
196 GATCTACTTCAATGTGAAAACATCC
* * * * * *
106140678 AAAGGCTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATATGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
* ** *
106140743 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGAT-TCGCTTCAGCGTAAACAC
66 TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACAC
*
106140807 CTGAA
130 GTGAA
106140812 GGTCAAATCT
Statistics
Matches: 823, Mismatches: 156, Indels: 99
0.76 0.14 0.09
Matches are distributed among these distances:
212 4 0.00
213 13 0.02
214 10 0.01
215 3 0.00
216 16 0.02
217 14 0.02
219 22 0.03
220 166 0.20
221 390 0.47
223 7 0.01
224 5 0.01
225 15 0.02
226 10 0.01
227 9 0.01
228 15 0.02
229 5 0.01
230 3 0.00
231 4 0.00
232 1 0.00
233 30 0.04
234 19 0.02
236 15 0.02
237 17 0.02
238 4 0.00
239 9 0.01
240 13 0.02
241 4 0.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (220 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTA
TTCGATTTATTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCAAAATCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAAGATGCCAAATCATCTTG
GATCTACTTCAATGTGAAAACATCC
Found at i:106140295 original size:78 final size:78
Alignment explanation
Indices: 106140004--106140269 Score: 417
Period size: 78 Copynumber: 3.4 Consensus size: 78
106139994 GAAAACATCC
* * * *
106140004 GAAGGTTAGATCTGCTATGTCTTCAATCTGCT-TCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
106140068 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
106140081 GAGGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
106140146 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
106140159 GAAGGTCAAATCTACTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
106140224 GATCTACTTCAAT
66 GATCTGCTTCAAT
* *
106140237 GAAGGTCAGATCTGTTATGTCTTCGATCTGCTC
1 GAAGGTCAAATCTGCTATGTCTTCGATCTGCTC
106140270 TCTGTGGAAT
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
77 27 0.16
78 146 0.84
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
GAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:106140709 original size:674 final size:675
Alignment explanation
Indices: 106139405--106140735 Score: 2232
Period size: 674 Copynumber: 2.0 Consensus size: 675
106139395 ATGTAAACAC
* * *
106139405 ATGAAGGTCAGATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* **
106139470 TGGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTACTCCCCGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTCGATCTACTCCCCGTCTAATACAGAGA
* * *
106139535 TGCCAAATCATCTTGGACCTGCTTCAATGAAGGTCAGATTTGCTATGTCTTTGATCTGCTCTCCG
131 TGCCAAATCATCTTGGACCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCG
* * *
106139600 TCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTATTCTCTGACAGTACAGAGATGCCAAATC
196 TCGAATATGAAGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAGTACAGAGATGCCAAATC
* *
106139665 ATCTTAGATCTGCTTCAGCGTAAACATGTGAAAGCCAAATTTGCTATGTCTTCGATCTACTCCTT
261 ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTT
* * *
106139730 GTCAACGCAAAGATGCCAAATCATCTTGGATTTACTTCGATGTGAAGGTCCTCCGAAGGTTAGAT
326 GTCAACACAAAGATGCCAAATCATCTTGGATCTACTTCGATGTGAAGGTCATCCGAAGGTTAGAT
* *
106139795 CTGCTATGTCTTCGATCTGCTCTCTGTTGAATATGGAGATGCCAAATCTGTTTATTCGATTTGTT
391 CTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTATTCGATTTGTT
* *
106139860 CTCTGACAATATAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAAAA
456 CTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAAAACGTGAAAGCAAAA
* *
106139925 TCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCA
521 TCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCA
* * *
106139990 ATGTGAAAACATCCGAAGGTTAGATCTGCTATGTCTTCAATCTGCT-TCCGTCTAATACAGAGAT
586 ATGTGAAAACATCCAAAGGCTAGATCTGCTATGTCTTCAATCTGCTCTCCGTCGAATACAGAGAT
106140054 GCCAAATCATCTTGGATCTGCTTCA
651 GCCAAATCATCTTGGATCTGCTTCA
* *
106140079 ATGAGGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
* * *
106140144 TGGATCTGCTTCAATGAAGGTCAAATCTACTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGA
66 TGGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTCGATCTACTCCCCGTCTAATACAGAGA
* * *
106140209 TGCCAAATCATCTTGGATCTACTTCAATGAAGGTCAGATCTGTTATGTCTTCGATCTGCTCTCTG
131 TGCCAAATCATCTTGGACCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCG
* * * *
106140274 TGGAATATGAAGGTGCCAAATCTATTTCTTCGATTTTTTCTCTGACAGTATAGAGATGCCAAATC
196 TCGAATATGAAGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAGTACAGAGATGCCAAATC
* *
106140339 ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTT
261 ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTT
*
106140404 GTCAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAGGTCATCCGAAGGTTAGAT
326 GTCAACACAAAGATGCCAAATCATCTTGGATCTACTTCGATGTGAAGGTCATCCGAAGGTTAGAT
*
106140469 CTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTT
391 CTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTATTCGATTTGTT
* *
106140534 CTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGTTTCAGCGTAAAAACGTGAAAGCCAAA
456 CTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAAAACGTGAAAGCAAAA
*
106140599 TCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCG
521 TCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCA
* *
106140664 ATGTGAAAACATCCAAAGGCTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGAT
586 ATGTGAAAACATCCAAAGGCTAGATCTGCTATGTCTTCAATCTGCTCTCCGTCGAATACAGAGAT
106140729 GCCAAAT
651 GCCAAAT
106140736 ATGTTTCTTC
Statistics
Matches: 609, Mismatches: 47, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
674 586 0.96
675 23 0.04
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (675 bp):
ATGAAGGTCAAATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCAATGAAGGTCAAATCTACTATGTCTTCGATCTACTCCCCGTCTAATACAGAGA
TGCCAAATCATCTTGGACCTACTTCAATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCG
TCGAATATGAAGATGCCAAATCTATTTCTTCGATTTATTCTCTGACAGTACAGAGATGCCAAATC
ATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTACTCCTT
GTCAACACAAAGATGCCAAATCATCTTGGATCTACTTCGATGTGAAGGTCATCCGAAGGTTAGAT
CTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTATTCGATTTGTT
CTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCGTAAAAACGTGAAAGCAAAA
TCTGCTATGTCTTCGATCTACTCCTTGTCAACGCAAGGATGCCAAATCATCTTAGATCTACTTCA
ATGTGAAAACATCCAAAGGCTAGATCTGCTATGTCTTCAATCTGCTCTCCGTCGAATACAGAGAT
GCCAAATCATCTTGGATCTGCTTCA
Found at i:106148870 original size:22 final size:21
Alignment explanation
Indices: 106148835--106148910 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
106148825 AAAAGGTATC
* *
106148835 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
106148856 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
106148879 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
106148898 TGC-AATCATATCT
1 TACAAATCATATCT
106148911 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:106148927 original size:35 final size:37
Alignment explanation
Indices: 106148864--106148942 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
106148854 ATTACAAAAT
106148864 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
106148900 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
106148935 CATATCAT
1 CATATCAT
106148943 TGAAGATTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:106148940 original size:14 final size:15
Alignment explanation
Indices: 106148885--106148940 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
106148875 AGATTGCATA
106148885 TCATATCTAAGATTG
1 TCATATCTAAGATTG
106148900 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
106148918 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
106148935 -CATATC
1 TCATATC
106148941 ATTGAAGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:106148950 original size:17 final size:19
Alignment explanation
Indices: 106148871--106148942 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
106148861 AATCATATCT
106148871 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
106148890 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
106148908 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
106148925 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
106148943 TGAAGATTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:106150444 original size:15 final size:15
Alignment explanation
Indices: 106150424--106150458 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
106150414 GAGCAGGGGA
*
106150424 AAAAAAGAAGGAAGG
1 AAAAAAGAAAGAAGG
106150439 AAAAAAGAAAGAAGG
1 AAAAAAGAAAGAAGG
106150454 AAAAA
1 AAAAA
106150459 GGGAAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAGAAGG
Found at i:106152129 original size:53 final size:53
Alignment explanation
Indices: 106152065--106152186 Score: 190
Period size: 53 Copynumber: 2.3 Consensus size: 53
106152055 ATATTGTTAC
* * *
106152065 TGTTACCGTTACTGTTTCGAATTTGTTCCGATGAGGTACTCTGTGTACTGTAA
1 TGTTACTGTTACTGTTTCGAATTTGTTCCGATGAGGTACTCTATGTACCGTAA
* *
106152118 TGTTACTGTTACTGTTTCGGATTTGTTCCGATGAGGTACTCTATGTACCGTAC
1 TGTTACTGTTACTGTTTCGAATTTGTTCCGATGAGGTACTCTATGTACCGTAA
*
106152171 TGCTACTGTTACTGTT
1 TGTTACTGTTACTGTT
106152187 ACTGTTCTGG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.17, C:0.18, G:0.22, T:0.43
Consensus pattern (53 bp):
TGTTACTGTTACTGTTTCGAATTTGTTCCGATGAGGTACTCTATGTACCGTAA
Found at i:106152368 original size:18 final size:18
Alignment explanation
Indices: 106152305--106152375 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
106152295 TGGAAAGATC
*
106152305 GACTGTTACTAAATAATTT
1 GACTGTTACTGAATAA-TT
* * *
106152324 AATTGTTACTGTAT-ATCT
1 GACTGTTACTGAATAAT-T
* *
106152342 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
106152360 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
106152376 CCGATCAGTT
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
17 1 0.03
18 27 0.68
19 12 0.30
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:106152440 original size:36 final size:36
Alignment explanation
Indices: 106152384--106152452 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
106152374 AACCGATCAG
* * *
106152384 TTGATTGATACTGAACAACTGATTATTATTGAATAA
1 TTGATTGATACCGAACAACTGACTATTACTGAATAA
* *
106152420 TTGATTGTTACCGAATAACTGACTATTACTGAA
1 TTGATTGATACCGAACAACTGACTATTACTGAA
106152453 AAATAATTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (36 bp):
TTGATTGATACCGAACAACTGACTATTACTGAATAA
Found at i:106158198 original size:18 final size:18
Alignment explanation
Indices: 106158175--106158212 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
106158165 AAGCCCAACA
106158175 TTACATAACTAGATTGCC
1 TTACATAACTAGATTGCC
106158193 TTACATAACTAGATTGCC
1 TTACATAACTAGATTGCC
106158211 TT
1 TT
106158213 CTAAGTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (18 bp):
TTACATAACTAGATTGCC
Found at i:106161859 original size:32 final size:32
Alignment explanation
Indices: 106161823--106161904 Score: 164
Period size: 32 Copynumber: 2.6 Consensus size: 32
106161813 AATATAATTT
106161823 GCTTAGTCGAATATGATTGAGCTAATAAGTCA
1 GCTTAGTCGAATATGATTGAGCTAATAAGTCA
106161855 GCTTAGTCGAATATGATTGAGCTAATAAGTCA
1 GCTTAGTCGAATATGATTGAGCTAATAAGTCA
106161887 GCTTAGTCGAATATGATT
1 GCTTAGTCGAATATGATT
106161905 TGGCTTTAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (32 bp):
GCTTAGTCGAATATGATTGAGCTAATAAGTCA
Found at i:106171201 original size:24 final size:24
Alignment explanation
Indices: 106171170--106171255 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 24
106171160 TTCCAGCAAC
*
106171170 TAAACACTTCAATTTGTAGTACTT
1 TAAACACTTCAATTTGTAGAACTT
* *
106171194 AAAACACTTCAA-TT-TACAACATT
1 TAAACACTTCAATTTGTAGAAC-TT
* * *
106171217 TAAGCACTTCAATTTATAGCA-TT
1 TAAACACTTCAATTTGTAGAACTT
106171240 TAAACACTTCAATTTG
1 TAAACACTTCAATTTG
106171256 CAACACTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
22 4 0.08
23 30 0.60
24 13 0.26
25 3 0.06
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (24 bp):
TAAACACTTCAATTTGTAGAACTT
Found at i:106171228 original size:23 final size:23
Alignment explanation
Indices: 106171195--106171266 Score: 99
Period size: 23 Copynumber: 3.1 Consensus size: 23
106171185 GTAGTACTTA
106171195 AAACACTTCAATTTACAACATTT
1 AAACACTTCAATTTACAACATTT
* * *
106171218 AAGCACTTCAATTTATAGCATTT
1 AAACACTTCAATTTACAACATTT
*
106171241 AAACACTTCAATTTGCAACACTTT
1 AAACACTTCAATTTACAACA-TTT
106171265 AA
1 AA
106171267 TTTAGTAGGG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 36 0.88
24 5 0.12
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (23 bp):
AAACACTTCAATTTACAACATTT
Found at i:106171243 original size:47 final size:47
Alignment explanation
Indices: 106171174--106171266 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 47
106171164 AGCAACTAAA
* *
106171174 CACTTCAATTTGTAGTACTTAAAACACTTCAATTTACAACA-TTTAAG
1 CACTTCAATTTATAGCACTT-AAACACTTCAATTTACAACACTTTAAG
* *
106171221 CACTTCAATTTATAGCATTTAAACACTTCAATTTGCAACACTTTAA
1 CACTTCAATTTATAGCACTTAAACACTTCAATTTACAACACTTTAA
106171267 TTTAGTAGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 19 0.46
47 22 0.54
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (47 bp):
CACTTCAATTTATAGCACTTAAACACTTCAATTTACAACACTTTAAG
Found at i:106171796 original size:7 final size:7
Alignment explanation
Indices: 106171784--106171814 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
106171774 AAGAATTCTA
106171784 TTATGAG
1 TTATGAG
106171791 TTATGAG
1 TTATGAG
106171798 TTATGAG
1 TTATGAG
106171805 TTATGAG
1 TTATGAG
106171812 TTA
1 TTA
106171815 AGGCATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (7 bp):
TTATGAG
Found at i:106175094 original size:8 final size:8
Alignment explanation
Indices: 106175083--106175170 Score: 58
Period size: 8 Copynumber: 10.9 Consensus size: 8
106175073 ATATTAAATA
106175083 TTAAATTT
1 TTAAATTT
106175091 TTAAATTT
1 TTAAATTT
106175099 TT--ATTT
1 TTAAATTT
* *
106175105 TTTATTTT
1 TTAAATTT
* *
106175113 TTTATTTT
1 TTAAATTT
*
106175121 TTTAA-TT
1 TTAAATTT
106175128 TTAAA-TT
1 TTAAATTT
106175135 TTAAATTTTT
1 TTAAA--TTT
106175145 TTGAAGATTT
1 TT-AA-ATTT
106175155 TTATAATTT
1 TTA-AATTT
106175164 TTAAATT
1 TTAAATT
106175171 ATCATATAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 16
0.78 0.03 0.18
Matches are distributed among these distances:
6 6 0.09
7 13 0.19
8 29 0.42
9 8 0.12
10 10 0.14
11 2 0.03
12 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (8 bp):
TTAAATTT
Found at i:106175106 original size:15 final size:15
Alignment explanation
Indices: 106175088--106175144 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
106175078 AAATATTAAA
106175088 TTTTTAAATTTTTAT
1 TTTTTAAATTTTTAT
**
106175103 TTTTTATTTTTTTAT
1 TTTTTAAATTTTTAT
* *
106175118 TTTTTTAA-TTTTAA
1 TTTTTAAATTTTTAT
*
106175132 ATTTTAAATTTTT
1 TTTTTAAATTTTT
106175145 TTGAAGATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
14 11 0.33
15 22 0.67
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTAAATTTTTAT
Found at i:106175142 original size:23 final size:21
Alignment explanation
Indices: 106175083--106175146 Score: 58
Period size: 23 Copynumber: 2.9 Consensus size: 21
106175073 ATATTAAATA
106175083 TTAAATTTTTAAATTTTTATTTT
1 TTAAA-TTTTAAATTTTT-TTTT
* **
106175106 TT-ATTTTTTTATTTTTTTAATT
1 TTAAATTTTAAATTTTTTT--TT
106175128 TTAAATTTTAAATTTTTTT
1 TTAAATTTTAAATTTTTTT
106175147 GAAGATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
20 2 0.06
21 10 0.31
22 5 0.16
23 15 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (21 bp):
TTAAATTTTAAATTTTTTTTT
Found at i:106176097 original size:38 final size:39
Alignment explanation
Indices: 106176045--106176121 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
106176035 TTTGGGGTTC
* *
106176045 AGGGTTTTAAGGGTTATAGTTTAGTGTTTAGGGTTTTTT
1 AGGGTTTTAAGGGTTATAGATTAGTGTTTAGGATTTTTT
* *
106176084 AGGG-TTTAGGGGTTATAGATTAGTGTTTATGATTTTTT
1 AGGGTTTTAAGGGTTATAGATTAGTGTTTAGGATTTTTT
106176122 TGGGGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (39 bp):
AGGGTTTTAAGGGTTATAGATTAGTGTTTAGGATTTTTT
Found at i:106176211 original size:41 final size:41
Alignment explanation
Indices: 106176154--106176291 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 41
106176144 GTTATATAAA
* * * *
106176154 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
106176195 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
106176236 TTTTAGCGGCGTTTTACCGAAAGTGCGGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
106176277 TTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
106176292 TGGTAAAATG
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 90 1.00
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:106176313 original size:41 final size:41
Alignment explanation
Indices: 106176154--106176325 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 41
106176144 GTTATATAAA
* * * *
106176154 TTTTAGCGGCGTTTTACC-AAAAGCGCCACTAATGATCTAGT
1 TTTTAGCGGCATTTTACCGAAAA-TGCCACTAATGCTCTGGT
* ** *
106176195 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCATTTTACCGAAAATGCCACTAATGCTCTGGT
* * **
106176236 TTTTAGCGGCGTTTTACCGAAAGTGCGGCTAATGCTCTGGT
1 TTTTAGCGGCATTTTACCGAAAATGCCACTAATGCTCTGGT
** * *
106176277 TTTTAGCGGCATTTT-TGGTAAAATGCCACTATTGCTCT-AT
1 TTTTAGCGGCATTTTACCG-AAAATGCCACTAATGCTCTGGT
106176317 TTTTAGCGG
1 TTTTAGCGG
106176326 TAAAACGCCG
Statistics
Matches: 115, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 11 0.10
41 101 0.88
42 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCATTTTACCGAAAATGCCACTAATGCTCTGGT
Found at i:106176313 original size:82 final size:81
Alignment explanation
Indices: 106176154--106176325 Score: 193
Period size: 82 Copynumber: 2.1 Consensus size: 81
106176144 GTTATATAAA
* *
106176154 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTAGTTTTTAGCGGCGTTTTACCGAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTAGTTTTTAGCGGCATTTTACCGAAAAC
* *
106176219 GCCGCTAATGCTCTGGT
66 GCCACTAATGCTCT-AT
* * ** * * **
106176236 TTTTAGCGGCGTTTTACCGAAAGTGCGGCTAATGCTCTGGTTTTTAGCGGCATTTT-TGGTAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTAGTTTTTAGCGGCATTTTACCG-AAAA
* *
106176300 TGCCACTATTGCTCTAT
65 CGCCACTAATGCTCTAT
106176317 TTTTAGCGG
1 TTTTAGCGG
106176326 TAAAACGCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 11 0.15
82 64 0.85
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGATCTAGTTTTTAGCGGCATTTTACCGAAAAC
GCCACTAATGCTCTAT
Found at i:106177387 original size:49 final size:49
Alignment explanation
Indices: 106177310--106177407 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
106177300 ATTTCACGCA
* * *
106177310 ATCCTTGACTCCCAGTTCCGTAAGTTCTTGGGCATACTCGATTTTTATC
1 ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
*
106177359 ATCCTTGGCTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
1 ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
106177408 TTCCATTGCT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.37
Consensus pattern (49 bp):
ATCCTTGACTCCCAGTTCCGTAAATTCTTGGGCACACTCGATATTTATC
Found at i:106182663 original size:18 final size:18
Alignment explanation
Indices: 106182640--106182732 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
106182630 CCCAACTACT
* *
106182640 GTATACGTGAACAGTATC
1 GTATACGTGAATAGTACC
106182658 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
106182676 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
106182694 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
106182712 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
106182730 GTA
1 GTA
106182733 AACGGTCGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:106196341 original size:12 final size:12
Alignment explanation
Indices: 106196324--106196393 Score: 67
Period size: 12 Copynumber: 5.8 Consensus size: 12
106196314 CCAATCTTTC
106196324 TTTTTATTTTTA
1 TTTTTATTTTTA
106196336 TTTTTATTTATT-
1 TTTTTATTT-TTA
*
106196348 TATTTA-TTTTA
1 TTTTTATTTTTA
106196359 TTATTTATTATTT-
1 TT-TTTATT-TTTA
106196372 TCTTTTATTTTTA
1 T-TTTTATTTTTA
106196385 -TTTTATTTT
1 TTTTTATTTT
106196394 AGTTAAATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
10 2 0.04
11 12 0.24
12 21 0.43
13 10 0.20
14 4 0.08
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:106196347 original size:16 final size:17
Alignment explanation
Indices: 106196326--106196392 Score: 74
Period size: 16 Copynumber: 4.2 Consensus size: 17
106196316 AATCTTTCTT
106196326 TTTATTT-TTATTTTTA
1 TTTATTTATTATTTTTA
106196342 TTTATTTATT-TATTTTA
1 TTTATTTATTAT-TTTTA
106196359 -TTATTTATTATTTTCT-
1 TTTATTTATTATTTT-TA
106196375 TTTATTT-TTA-TTTTA
1 TTTATTTATTATTTTTA
106196390 TTT
1 TTT
106196393 TAGTTAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
14 1 0.02
15 6 0.13
16 23 0.51
17 15 0.33
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTATTTATTATTTTTA
Found at i:106196351 original size:20 final size:21
Alignment explanation
Indices: 106196326--106196392 Score: 68
Period size: 23 Copynumber: 3.1 Consensus size: 21
106196316 AATCTTTCTT
106196326 TTTAT-TTTTATTTTTATTTA
1 TTTATATTTTATTTTTATTTA
106196346 TTTATTTATTTTATTATTTA-TTA
1 TTTA--TATTTTATT-TTTATTTA
*
106196369 TTT-TCTTTTATTTTTATTTTA
1 TTTATATTTTATTTTTA-TTTA
106196390 TTT
1 TTT
106196393 TAGTTAAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
19 4 0.10
20 12 0.30
21 6 0.15
22 1 0.03
23 13 0.32
24 4 0.10
ACGTcount: A:0.19, C:0.01, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTATATTTTATTTTTATTTA
Found at i:106197519 original size:118 final size:118
Alignment explanation
Indices: 106197311--106197541 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 118
106197301 TGTTTTCCAT
* * *
106197311 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGAGTGCTTGGGTTGTCATT
106197376 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
** * *
106197429 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAGCCGGGGTAGAGTGCTTGGGTTGTCTTT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGAGTGCTTGGGTTGTCATT
****
106197494 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
106197542 ACCGGAAATA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 102 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGAGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCGA
Found at i:106212950 original size:39 final size:40
Alignment explanation
Indices: 106212907--106212990 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
106212897 GCGTTTTAAT
*
106212907 AAAAACGCCACT-AAAAACGAGCATTAGCGGCACTTCTAC
1 AAAAACGCCACTAAAAAACGAGCATTAGCAGCACTTCTAC
* *
106212946 AAAAACGCCACTAAAAAACGAGCATTAGCAGCGCTTTTAC
1 AAAAACGCCACTAAAAAACGAGCATTAGCAGCACTTCTAC
106212986 AAAAA
1 AAAAA
106212991 TGCCGCTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.29
40 29 0.71
ACGTcount: A:0.45, C:0.25, G:0.14, T:0.15
Consensus pattern (40 bp):
AAAAACGCCACTAAAAAACGAGCATTAGCAGCACTTCTAC
Found at i:106213047 original size:41 final size:41
Alignment explanation
Indices: 106212969--106213071 Score: 127
Period size: 41 Copynumber: 2.5 Consensus size: 41
106212959 AAAAACGAGC
* * *
106212969 ATTAGCAGCGCTTTTA-CAAAAATGCCGCTATAAGTTGACA
1 ATTAGCGGCGCTTTTAGAAAAAACGCCGCTATAAGTTGACA
* * *
106213009 ATTAGCGGCGCTTTTAGAAAAAACGCCTCTATAGGTTGACC
1 ATTAGCGGCGCTTTTAGAAAAAACGCCGCTATAAGTTGACA
*
106213050 ATCAGCGGCGCTTTATAGAAAA
1 ATTAGCGGCGCTTT-TAGAAAA
106213072 CGTCGCAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 15 0.28
41 32 0.59
42 7 0.13
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTAGAAAAAACGCCGCTATAAGTTGACA
Found at i:106213182 original size:38 final size:39
Alignment explanation
Indices: 106213120--106213217 Score: 96
Period size: 41 Copynumber: 2.5 Consensus size: 39
106213110 TGAGATTTTG
* * * *
106213120 TGACTT-TAGCGGCGCTTCTT-AAAAA-CGCCGCTAATGC
1 TGACTTATAGCGGCG-TTTTTAAAAAAGCGCCGCAAAAGA
106213157 TGACTTATAGCGGCGTTTTTCAAAAAAGCGCCGCAAAAGA
1 TGACTTATAGCGGCGTTTTT-AAAAAAGCGCCGCAAAAGA
106213197 TCGA-TCTATAGCGGCGTTTTT
1 T-GACT-TATAGCGGCGTTTTT
106213218 TGAAAATCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
37 10 0.20
38 8 0.16
39 5 0.10
40 11 0.22
41 17 0.33
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (39 bp):
TGACTTATAGCGGCGTTTTTAAAAAAGCGCCGCAAAAGA
Found at i:106215192 original size:12 final size:13
Alignment explanation
Indices: 106215165--106215195 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
106215155 ATCACCTTTC
106215165 CCCCTAAAATTTT
1 CCCCTAAAATTTT
106215178 CCCCTAAAA-TTT
1 CCCCTAAAATTTT
106215190 CCCCTA
1 CCCCTA
106215196 GCCCTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.29, C:0.39, G:0.00, T:0.32
Consensus pattern (13 bp):
CCCCTAAAATTTT
Found at i:106218095 original size:24 final size:24
Alignment explanation
Indices: 106218067--106218113 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
106218057 TTAATAAATT
* *
106218067 AAATATTCTCTTACGTTTTATCAC
1 AAATATTATCGTACGTTTTATCAC
*
106218091 AAATATTATCGTCCGTTTTATCA
1 AAATATTATCGTACGTTTTATCA
106218114 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTACGTTTTATCAC
Found at i:106218264 original size:23 final size:22
Alignment explanation
Indices: 106218235--106218281 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
106218225 TGGATTAATA
106218235 AAAGCAAAAGACATGTCTATATT
1 AAAGCAAAAGACATGT-TATATT
*
106218258 AAAGCAAAAGACATGTTATTTT
1 AAAGCAAAAGACATGTTATATT
106218280 AA
1 AA
106218282 TTAATATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.28
Consensus pattern (22 bp):
AAAGCAAAAGACATGTTATATT
Found at i:106218321 original size:39 final size:39
Alignment explanation
Indices: 106218277--106218547 Score: 488
Period size: 39 Copynumber: 6.9 Consensus size: 39
106218267 GACATGTTAT
*
106218277 TTTAATTAATATAATTTGGATTAATTTATGTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
106218316 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
106218355 TTTAATTAATATAATTTGGATTAATTTGTTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
106218394 TTTAATTAGTATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
106218433 TTTAATTAGTATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
106218472 TTTAATTAGTATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
106218511 TTTAATTAATATAAATTGGATTAATTTATTTAAATAT
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATAT
106218548 ATAAGAATTT
Statistics
Matches: 226, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 226 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:106218338 original size:15 final size:14
Alignment explanation
Indices: 106218281--106218535 Score: 63
Period size: 14 Copynumber: 19.4 Consensus size: 14
106218271 TGTTATTTTA
106218281 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
106218296 ATTAAT-T--TATG
1 ATTAATATAATTTG
* * *
106218307 -TAAATATTATTTA
1 ATTAATATAATTTG
106218320 ATTAATATAATTTGG
1 ATTAATATAATTT-G
*
106218335 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
106218347 A--AATATTATTTA
1 ATTAATATAATTTG
106218359 ATTAATATAATTTG
1 ATTAATATAATTTG
*
106218373 ---GAT-TAATTTG
1 ATTAATATAATTTG
* * *
106218383 TTTAAATATTATTTA
1 ATT-AATATAATTTG
*
106218398 ATTAGTATAATTTGG
1 ATTAATATAATTT-G
*
106218413 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
106218425 A--AATATTATTTA
1 ATTAATATAATTTG
*
106218437 ATTAGTATAATTTGG
1 ATTAATATAATTT-G
*
106218452 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
106218464 A--AATATTATTTA
1 ATTAATATAATTTG
*
106218476 ATTAGTATAATTTGG
1 ATTAATATAATTT-G
*
106218491 ATTAAT-TTATTT-
1 ATTAATATAATTTG
* *
106218503 A--AATATTATTTA
1 ATTAATATAATTTG
*
106218515 ATTAATATAAATTGG
1 ATTAATAT-AATTTG
106218530 ATTAAT
1 ATTAAT
106218536 TTATTTAAAT
Statistics
Matches: 177, Mismatches: 33, Indels: 60
0.66 0.12 0.22
Matches are distributed among these distances:
10 23 0.13
11 28 0.16
12 10 0.06
13 2 0.01
14 71 0.40
15 43 0.24
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (14 bp):
ATTAATATAATTTG
Found at i:106218342 original size:24 final size:24
Alignment explanation
Indices: 106218315--106218520 Score: 67
Period size: 24 Copynumber: 8.1 Consensus size: 24
106218305 TGTAAATATT
*
106218315 ATTTAATT-AATATAATTTGGATTA
1 ATTTAATTAAATATAATTT-AATTA
* *
106218339 ATTTATTTAAATATTATTTAATTA
1 ATTTAATTAAATATAATTTAATTA
* ** **
106218363 ATATAATTTGGAT-TAATTTGTTTAA
1 ATTTAA-TTAAATATAATTTAATT-A
* *
106218388 ATATTATTTAATTAGTATAATTTGGATTA
1 AT-TTAATTAA--A-TATAATTT-AATTA
* *
106218417 ATTTATTTAAATATTATTTAATTA
1 ATTTAATTAAATATAATTTAATTA
* * ** *
106218441 GTATAATTTGGAT-TAATTTATTTAA
1 ATTTAA-TTAAATATAATTTAATT-A
* *
106218466 ATATTATTTAATTAGTATAATTTGGATTA
1 AT-TTAATTAA--A-TATAATTT-AATTA
* *
106218495 ATTTATTTAAATATTATTTAATTA
1 ATTTAATTAAATATAATTTAATTA
106218519 AT
1 AT
106218521 ATAAATTGGA
Statistics
Matches: 132, Mismatches: 33, Indels: 34
0.66 0.17 0.17
Matches are distributed among these distances:
24 43 0.33
25 40 0.30
26 6 0.05
27 2 0.02
28 18 0.14
29 18 0.14
30 5 0.04
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTTAATTAAATATAATTTAATTA
Found at i:106218665 original size:9 final size:9
Alignment explanation
Indices: 106218648--106218793 Score: 202
Period size: 9 Copynumber: 16.2 Consensus size: 9
106218638 TATATATTTG
*
106218648 AACTTACAT
1 AACTCACAT
106218657 AACTCACAT
1 AACTCACAT
*
106218666 AACTTACAT
1 AACTCACAT
* *
106218675 AACTTATAT
1 AACTCACAT
*
106218684 AATTCACAT
1 AACTCACAT
*
106218693 AACTTACAT
1 AACTCACAT
106218702 AACTCACAT
1 AACTCACAT
106218711 AACTCACAT
1 AACTCACAT
*
106218720 AACTTACAT
1 AACTCACAT
106218729 AACTCACAT
1 AACTCACAT
*
106218738 AACTTACAT
1 AACTCACAT
106218747 AACTCACAT
1 AACTCACAT
106218756 AACTCACAT
1 AACTCACAT
*
106218765 AATTCACAT
1 AACTCACAT
106218774 AACTCACAT
1 AACTCACAT
*
106218783 AACTTACAT
1 AACTCACAT
106218792 AA
1 AA
106218794 TACATAAGTA
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 121 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (9 bp):
AACTCACAT
Found at i:106223904 original size:13 final size:14
Alignment explanation
Indices: 106223888--106223916 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
106223878 TTATAAATAT
106223888 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
106223901 TTATAATGGTTTAA
1 TTATAATGGTTTAA
106223915 TT
1 TT
106223917 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:106224363 original size:21 final size:21
Alignment explanation
Indices: 106224335--106224396 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
106224325 AAGCAACAGA
106224335 GAGAGAGGCAGCGGCAGCAGC
1 GAGAGAGGCAGCGGCAGCAGC
*
106224356 GA-AGGAGGCAGCAGCAGCAGC
1 GAGA-GAGGCAGCGGCAGCAGC
* *
106224377 GAGAGAAGCAGAGGCAGCAG
1 GAGAGAGGCAGCGGCAGCAG
106224397 TGATGGTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.03
21 33 0.94
22 1 0.03
ACGTcount: A:0.34, C:0.21, G:0.45, T:0.00
Consensus pattern (21 bp):
GAGAGAGGCAGCGGCAGCAGC
Found at i:106224685 original size:31 final size:31
Alignment explanation
Indices: 106224648--106224717 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
106224638 TTATTGTATT
* * *
106224648 TTTCATGTTACATTTGCTGTTTTTGGTTGGA
1 TTTCATGCTACATTTGATGTTTTTGATTGGA
* *
106224679 TTTCATGCTATATTTGATGTTTTTTATTGGA
1 TTTCATGCTACATTTGATGTTTTTGATTGGA
*
106224710 TTTAATGC
1 TTTCATGC
106224718 AGAAAGGGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.17, C:0.09, G:0.19, T:0.56
Consensus pattern (31 bp):
TTTCATGCTACATTTGATGTTTTTGATTGGA
Found at i:106234018 original size:16 final size:16
Alignment explanation
Indices: 106233994--106234041 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 16
106233984 ATCTAAAGTA
106233994 TGCAATGTGATGGGTC
1 TGCAATGTGATGGGTC
*
106234010 TGGAATGTGGTGATGGGTC
1 TGCAA--T-GTGATGGGTC
106234029 TGCAATGTGATGG
1 TGCAATGTGATGG
106234042 ATTGGGCACG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 11 0.41
17 1 0.04
18 1 0.04
19 14 0.52
ACGTcount: A:0.19, C:0.08, G:0.42, T:0.31
Consensus pattern (16 bp):
TGCAATGTGATGGGTC
Found at i:106234024 original size:19 final size:19
Alignment explanation
Indices: 106234000--106234037 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
106233990 AGTATGCAAT
*
106234000 GTGATGGGTCTGGAATGTG
1 GTGATGGGTCTGCAATGTG
106234019 GTGATGGGTCTGCAATGTG
1 GTGATGGGTCTGCAATGTG
106234038 ATGGATTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.08, G:0.45, T:0.32
Consensus pattern (19 bp):
GTGATGGGTCTGCAATGTG
Found at i:106234333 original size:36 final size:36
Alignment explanation
Indices: 106234286--106234357 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
106234276 TTTAGCCAGC
106234286 AACAGAGTTGTGACTTGTCAATTAAGATACCTCTAA
1 AACAGAGTTGTGACTTGTCAATTAAGATACCTCTAA
106234322 AACAGAGTTGTGACTTGTCAATTAAGATACCTCTAA
1 AACAGAGTTGTGACTTGTCAATTAAGATACCTCTAA
106234358 CTCTTAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (36 bp):
AACAGAGTTGTGACTTGTCAATTAAGATACCTCTAA
Found at i:106243806 original size:27 final size:27
Alignment explanation
Indices: 106243768--106243821 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
106243758 TAGAATAGTG
106243768 TATGAGAGCGATTTGGAAGAGATGGAA
1 TATGAGAGCGATTTGGAAGAGATGGAA
106243795 TATGAGAGCGATTTGGAAGAGATGGAA
1 TATGAGAGCGATTTGGAAGAGATGGAA
106243822 CAAATACAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.22
Consensus pattern (27 bp):
TATGAGAGCGATTTGGAAGAGATGGAA
Found at i:106245054 original size:19 final size:19
Alignment explanation
Indices: 106245030--106245072 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
106245020 ATTGTAGAAG
106245030 TTCTTTATAAAAATTGATT
1 TTCTTTATAAAAATTGATT
106245049 TTCTTTATAAAAATTGATT
1 TTCTTTATAAAAATTGATT
106245068 TTCTT
1 TTCTT
106245073 GTTATACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (19 bp):
TTCTTTATAAAAATTGATT
Found at i:106251056 original size:16 final size:16
Alignment explanation
Indices: 106251023--106251056 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106251013 TTATACTGTT
* *
106251023 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
106251039 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
106251055 AA
1 AA
106251057 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:106253891 original size:21 final size:21
Alignment explanation
Indices: 106253857--106253897 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
106253847 AGACGAGCAA
* * *
106253857 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
106253878 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
106253898 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:106255836 original size:16 final size:16
Alignment explanation
Indices: 106255803--106255836 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
106255793 GGAGATTGTT
* *
106255803 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
106255819 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
106255835 AA
1 AA
106255837 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:106256904 original size:11 final size:11
Alignment explanation
Indices: 106256888--106256912 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
106256878 CATCGTACAA
106256888 AAATCAAAGAT
1 AAATCAAAGAT
106256899 AAATCAAAGAT
1 AAATCAAAGAT
106256910 AAA
1 AAA
106256913 CCCTGAAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (11 bp):
AAATCAAAGAT
Found at i:106267030 original size:24 final size:24
Alignment explanation
Indices: 106266993--106267100 Score: 73
Period size: 24 Copynumber: 4.4 Consensus size: 24
106266983 GTATATATTG
*
106266993 TATATGTTTTATA-TATGTTATGTA
1 TATAT-TTTTATACCATGTTATGTA
**
106267017 TATATTTTTAATATTACTAGTTA--TA
1 TATATTTTT-ATACCA-T-GTTATGTA
106267042 TATATTTCTTATA-CAT-TTCCATGTA
1 TATATTT-TTATACCATGTT--ATGTA
* *
106267067 CATATTTTTATACCATCTTATGTA
1 TATATTTTTATACCATGTTATGTA
106267091 TATATTTTTA
1 TATATTTTTA
106267101 AATACTATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 22
0.74 0.03 0.23
Matches are distributed among these distances:
21 2 0.03
23 6 0.09
24 28 0.40
25 25 0.36
26 5 0.07
27 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATTTTTATACCATGTTATGTA
Done.