Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 332 of 356
Found at i:106906964 original size:3 final size:3
Alignment explanation
Indices: 106906956--106907003 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
106906946 ACATTTCCAA
106906956 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
106907004 CAAAAGACGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:106907441 original size:29 final size:31
Alignment explanation
Indices: 106907378--106907445 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 31
106907368 TATGCATCTT
* * *
106907378 TGGTACATGTACTTTCATAAAATGTTCAATT
1 TGGTACTTATACTTTCATAAAATGTTCAATG
*
106907409 TGGTACTTATACTTT-A-AAAATGTTTAATG
1 TGGTACTTATACTTTCATAAAATGTTCAATG
106907438 TGGTACTT
1 TGGTACTT
106907446 GAACTATCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.58
30 1 0.03
31 13 0.39
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (31 bp):
TGGTACTTATACTTTCATAAAATGTTCAATG
Found at i:106931546 original size:24 final size:25
Alignment explanation
Indices: 106931519--106931568 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
106931509 TTAAAATTTT
106931519 AAAATTATTAAA-AAAAT-TCATAAA
1 AAAATTA-TAAATAAAATGTCATAAA
*
106931543 AAAATTATAAATAAAATGTTATAAA
1 AAAATTATAAATAAAATGTCATAAA
106931568 A
1 A
106931569 GTTTTAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 4 0.17
24 12 0.52
25 7 0.30
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAATTATAAATAAAATGTCATAAA
Found at i:106931552 original size:11 final size:11
Alignment explanation
Indices: 106931519--106931559 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
106931509 TTAAAATTTT
106931519 AAAATTATTAAA
1 AAAATTA-TAAA
106931531 AAAATTCATAAA
1 AAAATT-ATAAA
106931543 AAAATTATAAA
1 AAAATTATAAA
106931554 TAAAAT
1 -AAAAT
106931560 GTTATAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.19
12 21 0.78
13 1 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:106933872 original size:19 final size:17
Alignment explanation
Indices: 106933843--106933885 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
106933833 TAAGCAAAAT
* *
106933843 ATAATTCTTGATAATATA
1 ATAATTATTGA-AATAGA
106933861 ATTAATTATTGAAATAGA
1 A-TAATTATTGAAATAGA
106933879 ATAATTA
1 ATAATTA
106933886 AAAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 6 0.27
18 7 0.32
19 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (17 bp):
ATAATTATTGAAATAGA
Found at i:106937526 original size:25 final size:27
Alignment explanation
Indices: 106937489--106937541 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106937479 TCAAACATGC
106937489 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106937515 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106937541 A
1 A
106937542 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106939061 original size:26 final size:26
Alignment explanation
Indices: 106939025--106939108 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
106939015 CATGAAATTC
106939025 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106939051 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106939077 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
106939103 TTATCA
1 TTATCA
106939109 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106943319 original size:25 final size:27
Alignment explanation
Indices: 106943282--106943334 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106943272 TCAAACATGC
106943282 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106943308 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106943334 A
1 A
106943335 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106944855 original size:26 final size:26
Alignment explanation
Indices: 106944819--106944902 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
106944809 CATGAAATTC
106944819 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
106944845 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
106944871 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
106944897 TTATCA
1 TTATCA
106944903 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:106949115 original size:25 final size:27
Alignment explanation
Indices: 106949078--106949130 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
106949068 TCAAACATGC
106949078 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
106949104 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
106949130 A
1 A
106949131 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:106950654 original size:26 final size:26
Alignment explanation
Indices: 106950616--106950673 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
106950606 CATGAAATTC
106950616 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
106950642 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
106950668 TTATCA
1 TTATCA
106950674 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:106951590 original size:72 final size:73
Alignment explanation
Indices: 106951514--106951655 Score: 170
Period size: 72 Copynumber: 2.0 Consensus size: 73
106951504 ATTAAATGCT
*
106951514 TTATA-TATTATTTATTTTTATAAATATTAGTTATATAAAATATATATTAT-T-TT-TA-TTTA-
1 TTATATTATT-TTTATTATTATAAATATTA-TT-TAT-AAAT-TATATTATATATTATATTTTAC
106951573 TATATATTATCCA
61 TATATATTATCCA
* *
106951586 TTATATTATTTTTATTATTATACATTTTATTTATAAATTATATTATATATTATATTTTACTATAT
1 TTATATTATTTTTATTATTATAAATATTATTTATAAATTATATTATATATTATATTTTACTATAT
106951651 ATTAT
66 ATTAT
106951656 TCCTTACATT
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
68 8 0.13
69 5 0.08
70 5 0.08
71 4 0.07
72 25 0.41
73 14 0.23
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (73 bp):
TTATATTATTTTTATTATTATAAATATTATTTATAAATTATATTATATATTATATTTTACTATAT
ATTATCCA
Found at i:106951637 original size:12 final size:12
Alignment explanation
Indices: 106951554--106951655 Score: 64
Period size: 12 Copynumber: 8.2 Consensus size: 12
106951544 TTATATAAAA
*
106951554 TATATATTATTTT
1 TATATATTA-TAT
*
106951567 TATTTATATATAT
1 TATATAT-TATAT
**
106951580 TATCCATTATAT
1 TATATATTATAT
*
106951592 TAT-TTTTATTAT
1 TATATATTA-TAT
* *
106951604 TATACATTTTATT
1 TATATATTATA-T
*
106951617 TATAAATTATAT
1 TATATATTATAT
106951629 TATATATTATAT
1 TATATATTATAT
*
106951641 TTTACTA-TATAT
1 TATA-TATTATAT
106951653 TAT
1 TAT
106951656 TCCTTACATT
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
11 3 0.04
12 38 0.54
13 27 0.39
14 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (12 bp):
TATATATTATAT
Found at i:106951845 original size:12 final size:12
Alignment explanation
Indices: 106951830--106951939 Score: 58
Period size: 14 Copynumber: 8.2 Consensus size: 12
106951820 TTTACATATC
106951830 ATATTTTATTAT
1 ATATTTTATTAT
*
106951842 ATATTATATTAT
1 ATATTTTATTAT
106951854 ATACATTTTATTAT
1 AT--ATTTTATTAT
* *
106951868 ATATATATTCTTTT
1 ATAT-T-TTATTAT
*
106951882 ATATTACTTATCAT
1 ATATT--TTATTAT
106951896 ATAGTTTATATTATT
1 ATA-TTT-TATTA-T
*
106951911 ATATACTTTGTTTAT
1 ATAT--TTT-ATTAT
*
106951926 AAATTTTATTAT
1 ATATTTTATTAT
106951938 AT
1 AT
106951940 GCTATATATT
Statistics
Matches: 74, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
12 20 0.27
13 6 0.08
14 32 0.43
15 11 0.15
16 5 0.07
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.59
Consensus pattern (12 bp):
ATATTTTATTAT
Found at i:106951845 original size:17 final size:16
Alignment explanation
Indices: 106951799--106951885 Score: 59
Period size: 16 Copynumber: 5.9 Consensus size: 16
106951789 TATATTTCAT
106951799 TATATTTTATT-TATA
1 TATATTTTATTATATA
* *
106951814 TAT-TGTT-TTACATA
1 TATATTTTATTATATA
106951828 TCATATTTTATTATATA
1 T-ATATTTTATTATATA
106951845 T-TA---TA-T-TATA
1 TATATTTTATTATATA
*
106951855 TACATTTTATTATATA
1 TATATTTTATTATATA
106951871 TATATTCTT-TTATAT
1 TATATT-TTATTATAT
106951886 TACTTATCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 21
0.67 0.07 0.26
Matches are distributed among these distances:
10 5 0.09
11 2 0.04
12 2 0.04
13 2 0.04
14 9 0.16
15 8 0.15
16 18 0.33
17 9 0.16
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (16 bp):
TATATTTTATTATATA
Found at i:106951884 original size:14 final size:14
Alignment explanation
Indices: 106951810--106951885 Score: 55
Period size: 14 Copynumber: 5.2 Consensus size: 14
106951800 ATATTTTATT
*
106951810 TATATATTGTTTTA
1 TATATATTATTTTA
*
106951824 CATATCA-TATTTTA
1 TATAT-ATTATTTTA
106951838 TTATATATTATATTATA
1 -TATATATTAT-TT-TA
* * *
106951855 TACATTTTATTATA
1 TATATATTATTTTA
*
106951869 TATATATTCTTTTA
1 TATATATTATTTTA
106951883 TAT
1 TAT
106951886 TACTTATCAT
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
14 26 0.55
15 9 0.19
16 10 0.21
17 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.59
Consensus pattern (14 bp):
TATATATTATTTTA
Found at i:106951885 original size:40 final size:41
Alignment explanation
Indices: 106951798--106951887 Score: 96
Period size: 42 Copynumber: 2.2 Consensus size: 41
106951788 TTATATTTCA
* * *
106951798 TTATATTTTATTTATATATTGTTTTACATATCATATTTTAT
1 TTATATTATATTTATACATTGTTTTACATATCATATTCTAT
*
106951839 TATATATTATATTATATACATT-TTATTATATAT-ATATTCT-T
1 T-TATATTATATT-TATACATTGTT-TTACATATCATATTCTAT
106951880 TTATATTA
1 TTATATTA
106951888 CTTATCATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
40 7 0.17
41 3 0.07
42 18 0.43
43 14 0.33
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (41 bp):
TTATATTATATTTATACATTGTTTTACATATCATATTCTAT
Found at i:106951923 original size:21 final size:20
Alignment explanation
Indices: 106951862--106951926 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 20
106951852 ATATACATTT
106951862 TATTATATATATATTCT-TTTA
1 TATTAT-TATATATT-TGTTTA
*
106951883 TATTACTTATCATA-TAGTTTA
1 TATTA-TTAT-ATATTTGTTTA
106951904 TATTATTATATACTTTGTTTA
1 TATTATTATATA-TTTGTTTA
106951925 TA
1 TA
106951927 AATTTTATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 3 0.08
20 4 0.11
21 26 0.70
22 4 0.11
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (20 bp):
TATTATTATATATTTGTTTA
Found at i:106957815 original size:23 final size:22
Alignment explanation
Indices: 106957785--106957871 Score: 63
Period size: 22 Copynumber: 3.9 Consensus size: 22
106957775 TATATTGTTT
106957785 ATTATATTATTTTTTACTTATAA
1 ATTATATTATTTTTTA-TTATAA
* * *
106957808 ATTATATTTATTTATATATTTTAT
1 ATTATA-TTATTT-TTTATTATAA
*
106957832 A-TATATTATTTTTTA--AAAA
1 ATTATATTATTTTTTATTATAA
*
106957851 ATTATGTATTATTATTTATTA
1 ATTA--TATTATTTTTTATTA
106957872 ATTGTGTAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 13
0.70 0.11 0.19
Matches are distributed among these distances:
19 2 0.04
20 2 0.04
21 3 0.06
22 17 0.35
23 10 0.20
24 12 0.24
25 3 0.06
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (22 bp):
ATTATATTATTTTTTATTATAA
Found at i:106957869 original size:47 final size:46
Alignment explanation
Indices: 106957762--106957863 Score: 115
Period size: 46 Copynumber: 2.2 Consensus size: 46
106957752 ATAAATAGTA
*
106957762 TATACTATT-TTTATATATTGTTTATTATATTATTTTTTACTTATAAAT
1 TATA-TATTATTTATATATTGTTTATTATATTATTTTTTA--TAAAAAT
106957810 TATAT-TTATTTATATA-T-TTTATATATATTATTTTTTA-AAAAAT
1 TATATATTATTTATATATTGTTTAT-TATATTATTTTTTATAAAAAT
*
106957853 TATGTATTATT
1 TATATATTATT
106957864 ATTTATTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
43 9 0.18
44 5 0.10
45 5 0.10
46 17 0.35
47 9 0.18
48 4 0.08
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (46 bp):
TATATATTATTTATATATTGTTTATTATATTATTTTTTATAAAAAT
Found at i:106957951 original size:17 final size:17
Alignment explanation
Indices: 106957929--106957963 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
106957919 TTCATTATAT
106957929 TTACATTTTATTACATA
1 TTACATTTTATTACATA
*
106957946 TTACATTTTATTATATA
1 TTACATTTTATTACATA
106957963 T
1 T
106957964 ATATTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
TTACATTTTATTACATA
Found at i:106957994 original size:21 final size:19
Alignment explanation
Indices: 106957954--106958006 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
106957944 TATTACATTT
*
106957954 TATTATATATATAT-TTTTA
1 TATTAT-TATATATGGTTTA
106957973 TATTACTTATTATATGGTTTA
1 TATTA-TTA-TATATGGTTTA
106957994 TATTATTATATAT
1 TATTATTATATAT
106958007 TTTGGTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 12 0.40
20 9 0.30
21 9 0.30
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TATTATTATATATGGTTTA
Found at i:106969899 original size:44 final size:44
Alignment explanation
Indices: 106969840--106970890 Score: 915
Period size: 44 Copynumber: 23.8 Consensus size: 44
106969830 GATCCAAGAT
* * * *
106969840 GATTTGGTGTCTCTGTATTGTCAAAGAGCAGATCAAAGAT-GAAA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
* *
106969884 GATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAATATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
106969928 GATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
* * * *
106969972 GATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCAAAGAT-GATA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
* * *
106970016 GATTTGACGTCTCTGTATTATCAGAGAGCAGGTCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
106970060 GATTTGGCGTCTCTATATTGTCAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
106970104 GATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAG--ATAGCA
* ** * * * * * * *
106970151 GATCTAACCT-TCGGATGTTTTCATATCGAAGTAGATCCAAGAT----
1 GATTTGGCGTCTCTG-TATTGTCAGA--G-AGCAGATCGAAGATAGCA
* ** *
106970194 GATCTGATGTC-CT-TACGTT-TACA-AGGAGCAGATCGAAGACATAGTA
1 GATTTGGCGTCTCTGTA--TTGT-CAGA-GAGCAGATCGAAG--ATAGCA
*
106970240 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
*
106970284 GATTTGGCGTCTCTGTATTGTTAGAGAGCAGATCGAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
*
106970328 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
* *
106970372 GATTT-G-GTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
106970414 GATTTAGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
106970458 GATTTGGCATCTCTGTATTCGACGGAGAGCAGATCGAAGACATAAG-A
1 GATTTGGCGTCTCTGTATT-GTCAGAGAGCAGATCGAAG--AT-AGCA
* ** * * * * * * *
106970505 GATCTAACCT-TCGGATGTTTTCATATCGAAGTAGATCCAAGAT----
1 GATTTGGCGTCTCTG-TATTGTCAGA--G-AGCAGATCGAAGATAGCA
* * * * *
106970548 GATCTGACGTC-CT-TACGTTTATAAG-GAGCAGATCGAAGACATAGTA
1 GATTTGGCGTCTCTGTA---TTGTCAGAGAGCAGATCGAAG--ATAGCA
*
106970594 GATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
*
106970638 GATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCGAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
* *
106970682 GATTTGGCGTCTCTATATTGTC----AG-AGATCAAAGAT-GACA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAG-CA
*
106970721 GATTTGGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAGCA
1 GATTT-GGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * * *
106970766 GATTTGGAGTCTCTATTTTGTCAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* *
106970810 GATTTGGCGTCTCGGTATTGTCAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
* * *
106970854 GATTTGGCGTCTTTGTTTTGTCAGAGAGTAGATCGAA
1 GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAA
106970891 AATAACAAAT
Statistics
Matches: 833, Mismatches: 117, Indels: 114
0.78 0.11 0.11
Matches are distributed among these distances:
39 19 0.02
40 38 0.05
41 4 0.00
42 42 0.05
43 26 0.03
44 526 0.63
45 56 0.07
46 57 0.07
47 37 0.04
48 8 0.01
49 20 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCA
Found at i:106970490 original size:354 final size:354
Alignment explanation
Indices: 106969883--106970848 Score: 1568
Period size: 354 Copynumber: 2.7 Consensus size: 354
106969873 CAAAGATGAA
* * *
106969883 AGATTTGGCGTCTCTGTATTATCAGAGAGCAGATCGAATATAGCAGATTTGGCGTCTCTATATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
106969948 TCAGAGAGCAGATCAAAGATGACAGATTTGGCGTCTTTGTATTGTCAGAGAGTAGATCAAAGATG
66 TCAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAG-AGATCAAAGATG
* * *
106970013 ATAGATTTGACGTCTCTGTATTATCAGAGAGCAGGTCGAAGATAGCAGATTTGGCGTCTCTATAT
130 ACAGATTTG-CGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATAT
106970078 TGTCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAG
194 TGTCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAG
*
106970143 ACAT-AGCAGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATCTGATGTCCT
259 ACATAAG-AGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATCTGACGTCCT
106970207 TACGTTTACAAGGAGCAGATCGAAGACATAGT
323 TACGTTTACAAGGAGCAGATCGAAGACATAGT
*
106970239 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
*
106970304 TTAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCAAAGATG
66 TCAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAG-AGATCAAAGATG
* * * *
106970369 ACAGATTTG-GTCTCTGTATTGTCAGAGAGTAGATCGAAGATAGTAGATTTAGCGTCTCTGTATT
130 ACAGATTTGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATT
* * * *
106970433 GTCAGAGAGCAGATCAAAGATAGTAGATTTGGCATCTCTGTATTCGACGGAGAGCAGATCGAAGA
195 GTCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGA
106970498 CATAAGAGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATCTGACGTCCTTA
260 CATAAGAGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATCTGACGTCCTTA
*
106970563 CGTTTATAAGGAGCAGATCGAAGACATAGT
325 CGTTTACAAGGAGCAGATCGAAGACATAGT
*
106970593 AGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
1 AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
* *
106970658 TCAGAGAGTAGATCGAAGATGACAGATTTGGCGTCTCTATATTGTC----AGAGATCAAAGATGA
66 TCAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGAGATCAAAGATGA
* * *
106970719 CAGATTTGGGCGTCTCTGTATTGTCAAAGAGCAGATCGAAGATAGCAGATTTGGAGTCTCTATTT
131 CAGATTT--GCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATAT
* * *
106970784 TGTCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCGGTATT-GTCAGAGAGCAGATCGAAG
194 TGTCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAG
106970848 A
259 A
106970849 TAGTAGATTT
Statistics
Matches: 566, Mismatches: 40, Indels: 13
0.91 0.06 0.02
Matches are distributed among these distances:
349 20 0.04
350 2 0.00
351 19 0.03
352 87 0.15
354 306 0.54
355 2 0.00
356 130 0.23
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (354 bp):
AGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTG
TCAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTGTCAGAGAGAGATCAAAGATGA
CAGATTTGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTCTATATTG
TCAGAAAGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTCGACGGAGAGCAGATCGAAGAC
ATAAGAGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATCTGACGTCCTTAC
GTTTACAAGGAGCAGATCGAAGACATAGT
Found at i:106972626 original size:17 final size:17
Alignment explanation
Indices: 106972604--106972638 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
106972594 TTCATTATAT
106972604 TTACATTTTATTACATA
1 TTACATTTTATTACATA
*
106972621 TTACATTTTATTATATA
1 TTACATTTTATTACATA
106972638 T
1 T
106972639 ATTTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
TTACATTTTATTACATA
Found at i:106972649 original size:17 final size:18
Alignment explanation
Indices: 106972629--106972682 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 18
106972619 TATTACATTT
106972629 TATTA-TATATATTTTTA
1 TATTATTATATATTTTTA
*
106972646 TATTACTTATTATATGGTTTA
1 TATTA-TTA-TATAT-TTTTA
106972667 TATTATTATATATTTT
1 TATTATTATATATTTT
106972683 GGTTATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 5 0.16
18 2 0.06
19 7 0.23
20 8 0.26
21 9 0.29
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (18 bp):
TATTATTATATATTTTTA
Found at i:106977381 original size:22 final size:21
Alignment explanation
Indices: 106977348--106977394 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
106977338 TTGAACAACC
106977348 AAAATAGAAAAAAAAACTAATT
1 AAAATAGAAAAAAAAAC-AATT
*
106977370 AAAATA-AGAAAAAAAGCAATT
1 AAAATAGA-AAAAAAAACAATT
106977391 AAAA
1 AAAA
106977395 CAGGAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.15
Consensus pattern (21 bp):
AAAATAGAAAAAAAAACAATT
Found at i:106977383 original size:21 final size:22
Alignment explanation
Indices: 106977348--106977394 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
106977338 TTGAACAACC
106977348 AAAATAGAAAAAAAAA-CTAATT
1 AAAATAGAAAAAAAAAGC-AATT
*
106977370 AAAATA-AGAAAAAAAGCAATT
1 AAAATAGAAAAAAAAAGCAATT
106977391 AAAA
1 AAAA
106977395 CAGGAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.15
Consensus pattern (22 bp):
AAAATAGAAAAAAAAAGCAATT
Found at i:106978102 original size:43 final size:43
Alignment explanation
Indices: 106977995--106978143 Score: 223
Period size: 43 Copynumber: 3.5 Consensus size: 43
106977985 ATTGAAGGCT
* *
106977995 TTTTTTAGAAAAATGCCGCTAAAGACCAGGATTTTTAGCGGCGC
1 TTTTTTA-AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGC
* *
106978039 --TTTTAAAAAA-GCCGCTAAAGACAAGAACTTTTAGCGGCGC
1 TTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGC
106978079 TTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGC
1 TTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGC
106978122 TTGTTTTAAAAAACGCCGCTAA
1 TT-TTTTAAAAAACGCCGCTAA
106978144 TTTGCCCAGT
Statistics
Matches: 96, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
40 27 0.28
41 5 0.05
42 15 0.16
43 30 0.31
44 19 0.20
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
TTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGC
Found at i:106980146 original size:57 final size:56
Alignment explanation
Indices: 106980083--106980197 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 56
106980073 TTAAATTATA
106980083 TAACATGACCAATGTTAAAATTATATCATTACATATAAATAAAAAATCATAAAATCT
1 TAACATGACCAATGTTAAAATTATATCATTACATATAAAT-AAAAATCATAAAATCT
106980140 TAACATGACCAATGTTAAAATTATATCATTACATATAAATAAAAATCATAAAATCT
1 TAACATGACCAATGTTAAAATTATATCATTACATATAAATAAAAATCATAAAATCT
106980196 TA
1 TA
106980198 CTACATCATA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 18 0.31
57 40 0.69
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.32
Consensus pattern (56 bp):
TAACATGACCAATGTTAAAATTATATCATTACATATAAATAAAAATCATAAAATCT
Found at i:106984082 original size:9 final size:9
Alignment explanation
Indices: 106984068--106984234 Score: 129
Period size: 9 Copynumber: 17.3 Consensus size: 9
106984058 ATGTATTAGT
106984068 TAAGTTATG
1 TAAGTTATG
106984077 TAAGTTGTTATG
1 TAA---GTTATG
* *
106984089 TACGTTATA
1 TAAGTTATG
* *
106984098 TGAGTTCTG
1 TAAGTTATG
*
106984107 TAAATTATG
1 TAAGTTATG
106984116 TAAGTTGTTATG
1 TAA---GTTATG
106984128 TAA-TTATG
1 TAAGTTATG
106984136 TAAGTTATG
1 TAAGTTATG
*
106984145 TGAGTTATG
1 TAAGTTATG
106984154 TAAGTTGTTATG
1 TAA---GTTATG
*
106984166 TAAATTATG
1 TAAGTTATG
106984175 TAAGTTATG
1 TAAGTTATG
106984184 TAAGTTGTTATG
1 TAA---GTTATG
*
106984196 TAAATTATG
1 TAAGTTATG
*
106984205 TAAGTTATA
1 TAAGTTATG
*
106984214 TGAGTTATG
1 TAAGTTATG
106984223 TAAGTTATG
1 TAAGTTATG
106984232 TAA
1 TAA
106984235 TCTATTTAAG
Statistics
Matches: 125, Mismatches: 20, Indels: 26
0.73 0.12 0.15
Matches are distributed among these distances:
8 8 0.06
9 83 0.66
12 34 0.27
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:106984126 original size:30 final size:30
Alignment explanation
Indices: 106984092--106984234 Score: 104
Period size: 30 Copynumber: 4.9 Consensus size: 30
106984082 TGTTATGTAC
*
106984092 GTTATATGAGTTCTGTAAATTATGTAAGTT
1 GTTATATGAGTTATGTAAATTATGTAAGTT
* * * *
106984122 GTTATGT-AATTATGTAAGTTATGTGAGTT
1 GTTATATGAGTTATGTAAATTATGTAAGTT
* *
106984151 ATGTA-A-GTTGTTATGTAAATTATGTAAGTT
1 GT-TATATG-AGTTATGTAAATTATGTAAGTT
* *
106984181 ATGTA-A-GTTGTTATGTAAATTATGTAA---
1 GT-TATATG-AGTTATGTAAATTATGTAAGTT
*
106984208 GTTATATGAGTTATGTAAGTTATGTAA
1 GTTATATGAGTTATGTAAATTATGTAA
106984235 TCTATTTAAG
Statistics
Matches: 94, Mismatches: 14, Indels: 13
0.78 0.12 0.11
Matches are distributed among these distances:
26 2 0.02
27 19 0.20
28 1 0.01
29 19 0.20
30 53 0.56
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (30 bp):
GTTATATGAGTTATGTAAATTATGTAAGTT
Found at i:106984126 original size:39 final size:39
Alignment explanation
Indices: 106984068--106984234 Score: 185
Period size: 39 Copynumber: 4.3 Consensus size: 39
106984058 ATGTATTAGT
** * *
106984068 TAAGTTATGTAAGTTGTTATGTACGTTATATGAGTTCTG
1 TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATG
* *
106984107 TAAATTATGTAAGTTGTTATGT-AATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATG
* *
106984145 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATG
* * ** * *
106984184 TAAGTTGT-TATGTAAATTATGTAAGTTATATGAGTTATG
1 TAAGTTATGTAAGT-TGTTATGTAAATTATATAAGTTATG
106984223 TAAGTTATGTAA
1 TAAGTTATGTAA
106984235 TCTATTTAAG
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
38 35 0.33
39 70 0.65
40 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (39 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATG
Found at i:106984128 original size:12 final size:12
Alignment explanation
Indices: 106984111--106984198 Score: 55
Period size: 12 Copynumber: 7.7 Consensus size: 12
106984101 GTTCTGTAAA
106984111 TTATGTAAGTTG
1 TTATGTAAGTTG
*
106984123 TTATGTAA-TTA
1 TTATGTAAGTTG
* * *
106984134 TGTAAGTTATGTGAG
1 T-TATG-TAAGT-TG
106984149 TTATGTAAGTTG
1 TTATGTAAGTTG
*
106984161 TTATGTAA---A
1 TTATGTAAGTTG
106984170 TTATGTAA---G
1 TTATGTAAGTTG
106984179 TTATGTAAGTTG
1 TTATGTAAGTTG
106984191 TTATGTAA
1 TTATGTAA
106984199 ATTATGTAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
9 16 0.27
11 3 0.05
12 29 0.49
13 6 0.10
14 4 0.07
15 1 0.02
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.48
Consensus pattern (12 bp):
TTATGTAAGTTG
Found at i:106985189 original size:183 final size:183
Alignment explanation
Indices: 106984881--106985212 Score: 619
Period size: 183 Copynumber: 1.8 Consensus size: 183
106984871 CCTAGAACAG
* *
106984881 ATGTAAGATTATAAGATTAGCACCAAATATATTTCAATTTTAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAATTTAAGCAAATATAAAAACTTTATCTAT
*
106984946 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACTAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
106985011 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* *
106985064 ATGTAAGATTATAAGAGTAGCACCAGATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAATTTAAGCAAATATAAAAACTTTATCTAT
106985129 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
106985194 AGCAGGAAGCAGTAACTGA
131 AGCAGGAAGCAGTAACTGA
106985213 TGCTGAATCT
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 144 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAATTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:106986778 original size:22 final size:22
Alignment explanation
Indices: 106986750--106986793 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
106986740 GATTGAGTAA
106986750 ATGAGTTACCTTTTAAAGAGAC
1 ATGAGTTACCTTTTAAAGAGAC
106986772 ATGAGTTACCTTTTAAAGAGAC
1 ATGAGTTACCTTTTAAAGAGAC
106986794 TTCCTTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (22 bp):
ATGAGTTACCTTTTAAAGAGAC
Found at i:106988002 original size:22 final size:22
Alignment explanation
Indices: 106987974--106988016 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
106987964 CCTAGATCAA
106987974 GCAATAATCACGAAGCTAACAC
1 GCAATAATCACGAAGCTAACAC
106987996 GCAATAATCACGAAGCTAACA
1 GCAATAATCACGAAGCTAACA
106988017 AAACATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.26, G:0.14, T:0.14
Consensus pattern (22 bp):
GCAATAATCACGAAGCTAACAC
Found at i:106989621 original size:91 final size:93
Alignment explanation
Indices: 106989520--106989693 Score: 262
Period size: 91 Copynumber: 1.9 Consensus size: 93
106989510 GGCGTTTTTT
* * * *
106989520 AAAAAAACGCCGGTACTCCCCTAAAAATCCAATAAAAACGACGTCGTTTTTGTTAAACTGCT-T-
1 AAAAAAACGCCGCTACTCCCCTAAAAATCCAATAAAAACGACGCCATTTTCGTTAAACTGCTATG
*
106989583 TTTTTTGCGGCGTTTTTTCAAAAAATGC
66 TTTTTTGCGACGTTTTTTCAAAAAATGC
* * *
106989611 AAAAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGACGCCATTTTCGTTAAACTGCTATG
1 AAAAAAACGCCGCTACTCCCCTAAAAATCCAATAAAAACGACGCCATTTTCGTTAAACTGCTATG
106989676 TTTTTTGCGACGTTTTTT
66 TTTTTTGCGACGTTTTTT
106989694 AAATAAGTGC
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 55 0.75
92 1 0.01
93 17 0.23
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (93 bp):
AAAAAAACGCCGCTACTCCCCTAAAAATCCAATAAAAACGACGCCATTTTCGTTAAACTGCTATG
TTTTTTGCGACGTTTTTTCAAAAAATGC
Found at i:106990893 original size:41 final size:40
Alignment explanation
Indices: 106990834--106991002 Score: 162
Period size: 41 Copynumber: 4.2 Consensus size: 40
106990824 GGTTATATGA
106990834 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCT-G
* * * *
106990875 TCTTTAGCGGCGTTTTACCGGAAGCGCCGCTAATGTTCTA
1 TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
* * * *
106990915 TTTTTAGCGGCATTTTTTA-CTAAAACGCCGCTATTGCTCTG
1 TTTTTAGCGGC--GTTTTACCGAAAGCGCCGCTAATGCTCTG
* ** * *
106990956 TTTTTAACGGCGTTTT-TGGTAAAACGCCGCTATTGCTCTG
1 TTTTTAGCGGCGTTTTACCG-AAAGCGCCGCTAATGCTCTG
106990996 TGTTTTA
1 T-TTTTA
106991003 CAATTTTTGC
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
39 4 0.04
40 31 0.29
41 67 0.63
42 5 0.05
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
Found at i:106992542 original size:16 final size:16
Alignment explanation
Indices: 106992519--106992560 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
106992509 GCCCCTTCTG
106992519 CCTG-CCACCAGCACA
1 CCTGTCCACCAGCACA
* *
106992534 CCTGTCCACCTGCCCA
1 CCTGTCCACCAGCACA
106992550 CCTGCTCCACC
1 CCTG-TCCACC
106992561 TGCTCCACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 4 0.17
16 13 0.57
17 6 0.26
ACGTcount: A:0.17, C:0.57, G:0.12, T:0.14
Consensus pattern (16 bp):
CCTGTCCACCAGCACA
Found at i:106992560 original size:17 final size:17
Alignment explanation
Indices: 106992532--106992569 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
106992522 GCCACCAGCA
106992532 CACCTGTCCACCTGC-C
1 CACCTGTCCACCTGCTC
106992548 CACCTGCTCCACCTGCTC
1 CACCTG-TCCACCTGCTC
106992566 CACC
1 CACC
106992570 GCCCGTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 6 0.30
17 9 0.45
18 5 0.25
ACGTcount: A:0.13, C:0.58, G:0.11, T:0.18
Consensus pattern (17 bp):
CACCTGTCCACCTGCTC
Found at i:106992561 original size:9 final size:9
Alignment explanation
Indices: 106992532--106992569 Score: 62
Period size: 8 Copynumber: 4.4 Consensus size: 9
106992522 GCCACCAGCA
106992532 CACCTG-TC
1 CACCTGCTC
106992540 CACCTGC-C
1 CACCTGCTC
106992548 CACCTGCTC
1 CACCTGCTC
106992557 CACCTGCTC
1 CACCTGCTC
106992566 CACC
1 CACC
106992570 GCCCGTGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 14 0.50
9 14 0.50
ACGTcount: A:0.13, C:0.58, G:0.11, T:0.18
Consensus pattern (9 bp):
CACCTGCTC
Found at i:106993616 original size:3 final size:3
Alignment explanation
Indices: 106993526--106993598 Score: 110
Period size: 3 Copynumber: 24.3 Consensus size: 3
106993516 TTTGCTAAAT
106993526 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
106993574 TTA TTA GTA TTG TTA GTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
106993599 CATTTACATA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:106993853 original size:20 final size:21
Alignment explanation
Indices: 106993828--106993875 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
106993818 CTACCACTAC
106993828 TATTATTC-TTAGTAAC-ATAT
1 TATTATTCATT-GTAACTATAT
*
106993848 TATTA-TCATTGTTACTATAT
1 TATTATTCATTGTAACTATAT
106993868 TATTATTC
1 TATTATTC
106993876 CTTTTTTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 6 0.25
20 16 0.67
21 2 0.08
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (21 bp):
TATTATTCATTGTAACTATAT
Found at i:106999649 original size:14 final size:13
Alignment explanation
Indices: 106999628--106999661 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
106999618 GGGGGCCTTG
106999628 AAAAAAAAACAAT
1 AAAAAAAAACAAT
*
106999641 AATAAAAAAATAAT
1 AA-AAAAAAACAAT
106999655 AAAAAAA
1 AAAAAAA
106999662 TCCTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAAAAACAAT
Found at i:106999652 original size:11 final size:11
Alignment explanation
Indices: 106999632--106999683 Score: 61
Period size: 11 Copynumber: 4.6 Consensus size: 11
106999622 GCCTTGAAAA
106999632 AAAAACAATAAT
1 AAAAA-AATAAT
106999644 AAAAAAATAAT
1 AAAAAAATAAT
**
106999655 AAAAAAATCCT
1 AAAAAAATAAT
106999666 AAAAAAAGTAA-
1 AAAAAAA-TAAT
106999677 AAAAAAA
1 AAAAAAA
106999684 AAGGAGAGGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
11 29 0.83
12 6 0.17
ACGTcount: A:0.79, C:0.06, G:0.02, T:0.13
Consensus pattern (11 bp):
AAAAAAATAAT
Found at i:106999658 original size:22 final size:23
Alignment explanation
Indices: 106999629--106999684 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
106999619 GGGGCCTTGA
106999629 AAAAAAAACAATAATAAAAAAA-T
1 AAAAAAAA-AATAATAAAAAAAGT
* **
106999652 AATAAAAAAATCCTAAAAAAAGT
1 AAAAAAAAAATAATAAAAAAAGT
106999675 AAAAAAAAAA
1 AAAAAAAAAA
106999685 AGGAGAGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.12
Consensus pattern (23 bp):
AAAAAAAAAATAATAAAAAAAGT
Found at i:107000867 original size:64 final size:64
Alignment explanation
Indices: 107000794--107000915 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
107000784 ATGACATATT
*
107000794 TAGTTAGGAGCATTGGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCATCACATC
1 TAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCACATC
* * * *
107000858 TAGTTAGGAGCATTTGATTCATTTCGATCATCGTATCCTAATTATTTGGCATAAGCAT
1 TAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
107000916 AGATACATGA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (64 bp):
TAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATCACATC
Found at i:107001079 original size:86 final size:86
Alignment explanation
Indices: 107000968--107001290 Score: 529
Period size: 86 Copynumber: 3.8 Consensus size: 86
107000958 TGAATTTACT
* *
107000968 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATATTGTCTTCCTAAGCAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAG
*
107001033 TGGAGCAGATCAAAGACGGTG
66 TGGAGCAGATCAAAGACAGTG
* * * *
107001054 AGCCTTAACCCCCTAAGCAATAGGGTAACAGGCCAAATTATAGATCTTGTCTCCCTAATCAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAG
*
107001119 TGGAGTAGATCAAAGACAGTG
66 TGGAGCAGATCAAAGACAGTG
* * * *
107001140 AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAATCACAGATCTTGTCTCTCTAAGCAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAG
107001205 TGGAGCAGATCAAAGACAGTG
66 TGGAGCAGATCAAAGACAGTG
*
107001226 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGAAGTAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAG
107001291 GGTAACAAGC
Statistics
Matches: 215, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 215 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (86 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCTCCCTAAGCAGTAG
TGGAGCAGATCAAAGACAGTG
Found at i:107001204 original size:42 final size:42
Alignment explanation
Indices: 107001150--107001332 Score: 172
Period size: 42 Copynumber: 4.3 Consensus size: 42
107001140 AGCCTTAACC
* * *
107001150 CCCTAAGTAGTAGGGTAACAGGCTGAATCACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCT
* * ** ** * ** *
107001192 CTCTAAGCAGTAGTGG-AGCAGATC-AAAGACAGTGAGCCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGCCGAATTACA--GA-TCTTGTCT
107001236 CCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCT
* * *
107001278 CCCTAAGAAGTAGGGTAACAAGCCAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCT
107001320 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
107001333 TGGAGCAGAT
Statistics
Matches: 109, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
41 5 0.05
42 70 0.64
43 8 0.07
44 21 0.19
45 5 0.05
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGCCGAATTACAGATCTTGTCT
Found at i:107001243 original size:44 final size:44
Alignment explanation
Indices: 107001021--107001248 Score: 148
Period size: 44 Copynumber: 5.3 Consensus size: 44
107001011 ATATTGTCTT
*
107001021 CCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTAACCC
1 CCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCC
* * ** ** * ** *
107001065 CCTAAGCAATAG-GGTAACAGGCCAAA-TTA-T-AGATCTTGTCTC
1 CCTAAGCAGTAGTGG-AGCAGATCAAAGACAGTGAG-CCTTAACCC
* *
107001107 CCTAATCAGTAGTGGAGTAGATCAAAGACAGTGAGCCTTAACCC
1 CCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCC
* * * * ** * ** *
107001151 CCTAAGTAGTAG-GGTAACAGGCTGAATCACA--GA-TCTTGTCTC
1 CCTAAGCAGTAGTGG-AGCA-GATCAAAGACAGTGAGCCTTAACCC
*
107001193 TCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCC
1 CCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCC
107001237 CCTAAGCAGTAG
1 CCTAAGCAGTAG
107001249 GGTAACAGGC
Statistics
Matches: 125, Mismatches: 47, Indels: 24
0.64 0.24 0.12
Matches are distributed among these distances:
41 9 0.07
42 41 0.33
43 13 0.10
44 53 0.42
45 9 0.07
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (44 bp):
CCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCC
Found at i:107001315 original size:128 final size:128
Alignment explanation
Indices: 107001150--107001426 Score: 385
Period size: 128 Copynumber: 2.2 Consensus size: 128
107001140 AGCCTTAACC
* * ** *
107001150 CCCTAAGTAGTAGGGTAACAGGCTGAATCACAGATCTTGTCTCTCTAAGCAGTAGTGGAGCAGAT
1 CCCTAAGAAGTAGGGTAACAAGCCAAATCACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
** * *
107001215 CAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGC-CGAATTACAGATCTTGTCT
66 CAAAGACAGTGAGCCTTAACCCCCTAAG-AGTAGGGTAACAGGCAAAAATTACAGATCTTATCA
*
107001278 CCCTAAGAAGTAGGGTAACAAGCCAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
1 CCCTAAGAAGTAGGGTAACAAGCCAAATCACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
107001343 CGAAGACGGTGAGCCTTAACCCTCTAAGAGTAGGGTAATAGGCATAAAATTACAGATCTTATCA
66 CAAAGACAGTGAGCCTTAACCCCCTAAGAGTAGGGTAACAGGCA-AAAATTACAGATCTTATCA
* *
107001407 CCCTAAGCAGTAGGGGAACA
1 CCCTAAGAAGTAGGGTAACA
107001427 GATCAAAGAT
Statistics
Matches: 131, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
127 14 0.11
128 84 0.64
129 33 0.25
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22
Consensus pattern (128 bp):
CCCTAAGAAGTAGGGTAACAAGCCAAATCACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
CAAAGACAGTGAGCCTTAACCCCCTAAGAGTAGGGTAACAGGCAAAAATTACAGATCTTATCA
Found at i:107001357 original size:214 final size:215
Alignment explanation
Indices: 107001064--107001471 Score: 599
Period size: 214 Copynumber: 1.9 Consensus size: 215
107001054 AGCCTTAACC
* * * *
107001064 CCCTAAGCAATAGGGTAACAGGCCAAATTATAGATCTTGTCTCCCTAATCAGTAGTGGAGTAGAT
1 CCCTAAGCAATAGGGTAACAAGCCAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
* * *
107001129 CAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGC-T-GAATCACAGATCTTGTCT
66 CAAAGACAGTGAGCCTTAACCCCCTAAG-AGTAGGGTAACAGGCATAAAATCACAGATCTTATCA
* * * *
107001192 CTCTAAGCAGTAGTGGAGCAGATCAAAGACAG-TGAGCCTTAACCCCCTAAGCAGTAGGGTAACA
130 CCCTAAGCAGTAGGGGAACAGATCAAAGA-AGATGAGCCTTAACCCCCTAAACAGTAGGGTAACA
107001256 GGCCGAATTACAGATCTTGTCT
194 GGCCGAATTACAGATCTTGTCT
107001278 CCCTAAG-AAGTAGGGTAACAAGCCAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGA
1 CCCTAAGCAA-TAGGGTAACAAGCCAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGA
* * * * *
107001342 TCGAAGACGGTGAGCCTTAACCCTCTAAGAGTAGGGTAATAGGCATAAAATTACAGATCTTATCA
65 TCAAAGACAGTGAGCCTTAACCCCCTAAGAGTAGGGTAACAGGCATAAAATCACAGATCTTATCA
* *
107001407 CCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACAGTAGGGTAACAG
130 CCCTAAGCAGTAGGGGAACAGATCAAAGAAGATGAGCCTTAACCCCCTAAACAGTAGGGTAACAG
107001472 ACTGGAAATT
Statistics
Matches: 172, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
213 16 0.09
214 85 0.49
215 71 0.41
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (215 bp):
CCCTAAGCAATAGGGTAACAAGCCAAATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGAT
CAAAGACAGTGAGCCTTAACCCCCTAAGAGTAGGGTAACAGGCATAAAATCACAGATCTTATCAC
CCTAAGCAGTAGGGGAACAGATCAAAGAAGATGAGCCTTAACCCCCTAAACAGTAGGGTAACAGG
CCGAATTACAGATCTTGTCT
Found at i:107001455 original size:44 final size:44
Alignment explanation
Indices: 107001407--107001560 Score: 123
Period size: 44 Copynumber: 3.5 Consensus size: 44
107001397 GATCTTATCA
107001407 CCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACC
1 CCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACC
* * * * * ** ** ***
107001451 CCCTAAACAGTAGGGTAACAGACTGGAAA-TTTAAAGATCTTATGA
1 CCCTAAGCAGTAGGGGAACAGA-T-CAAAGATGATGGGCCTTAACC
* **
107001496 CCCTAAGC-GATAGGGGAATAGATTGAAGATGATGGGCCTTAACC
1 CCCTAAGCAG-TAGGGGAACAGATCAAAGATGATGGGCCTTAACC
*
107001540 CCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGGAACAG
107001561 GCTGGAAATT
Statistics
Matches: 77, Mismatches: 28, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
43 2 0.03
44 46 0.60
45 26 0.34
46 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACC
Found at i:107001510 original size:89 final size:89
Alignment explanation
Indices: 107001309--107001570 Score: 298
Period size: 89 Copynumber: 3.0 Consensus size: 89
107001299 GCCAAATTAC
* * * * * * * * * *
107001309 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCTCT-AAGAG
1 AGATCTTATCACCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACAG
* * * *
107001373 TAGGGTAATAGGCAT--AAAATTAC
66 TAGGGTAACAGAC-TGGAAATTTAA
107001396 AGATCTTATCACCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACAG
1 AGATCTTATCACCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACAG
107001461 TAGGGTAACAGACTGGAAATTTAA
66 TAGGGTAACAGACTGGAAATTTAA
* * ** *
107001485 AGATCTTATGACCCTAAGC-GATAGGGGAATAGATTGAAGATGATGGGCCTTAACCCCCTAAGCA
1 AGATCTTATCACCCTAAGCAG-TAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACA
*
107001549 GTAGGGTAACAGGCTGGAAATT
65 GTAGGGTAACAGACTGGAAATT
107001571 ACAAATCTCT
Statistics
Matches: 151, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
87 51 0.34
88 16 0.11
89 84 0.56
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (89 bp):
AGATCTTATCACCCTAAGCAGTAGGGGAACAGATCAAAGATGATGGGCCTTAACCCCCTAAACAG
TAGGGTAACAGACTGGAAATTTAA
Found at i:107001724 original size:45 final size:44
Alignment explanation
Indices: 107001657--107002050 Score: 307
Period size: 45 Copynumber: 8.7 Consensus size: 44
107001647 GATTGAAGTC
* *
107001657 ACAAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
* * * * *
107001701 AGCAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTGAAGTTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AT
* * *
107001748 AAATCATAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGA-TCAA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
*
107001794 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
* * * ** *
107001838 AGCAAATCTTATTTCCTTGAGGTTGCAGTGGAATAGATTGAAGCTAT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AT
* * *
107001885 AAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-
1 --A-CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
* * **
107001931 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG-T
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
**** *
107001974 CACGGGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGAT
1 -ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
*
107002019 AGCAAATCTTATTTCCCTGAAGTTGCAGTGGA
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGA
107002051 ACGAATTGAA
Statistics
Matches: 274, Mismatches: 53, Indels: 45
0.74 0.14 0.12
Matches are distributed among these distances:
41 56 0.20
42 8 0.03
43 5 0.02
44 40 0.15
45 94 0.34
47 6 0.02
49 6 0.02
50 8 0.03
51 51 0.19
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT
Found at i:107001779 original size:96 final size:92
Alignment explanation
Indices: 107001662--107001835 Score: 240
Period size: 92 Copynumber: 1.8 Consensus size: 92
107001652 AAGTCACAAG
* * * *
107001662 TCTTATCTCACTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTAC
1 TCTTATCTCACTGAAGTTGCAGTAGAGCAGA-TCAA-A-A-CAAACCTTATCTCCCTAAAGTTAC
*
107001727 AGTGGAACAGATTGAAGTTATAAATCATAGA
62 AGTGGAACAGACTGAAGTTATAAATCATAGA
* *
107001758 TCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTGAAGTTGCAGTG
1 TCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTACAGTG
*
107001823 GAGCAGACTGAAG
66 GAACAGACTGAAG
107001836 ATAGCAAATC
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 35 0.50
93 1 0.01
94 1 0.01
95 3 0.04
96 30 0.43
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (92 bp):
TCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTACAGTG
GAACAGACTGAAGTTATAAATCATAGA
Found at i:107001972 original size:137 final size:137
Alignment explanation
Indices: 107001663--107001965 Score: 516
Period size: 137 Copynumber: 2.2 Consensus size: 137
107001653 AGTCACAAGT
*
107001663 CTTATCTCACTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTACA
* *
107001728 GTGGAACAGATTGAAGTTATAAATCATAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
107001793 AACAAAC
131 AACAAAC
* * * *
107001800 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCTTGAGGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTACA
* *
107001865 GTGGAATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
107001930 AACAAAC
131 AACAAAC
*
107001937 CTTATCTCCCTAAAGTTGCAGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
107001966 GTTGAAGTCA
Statistics
Matches: 156, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 156 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (137 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTACA
GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
AACAAAC
Found at i:107001993 original size:181 final size:182
Alignment explanation
Indices: 107001799--107002143 Score: 552
Period size: 181 Copynumber: 1.9 Consensus size: 182
107001789 TCAAAACAAA
* *
107001799 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCTTGAGGTTGC
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
* * **
107001864 AGTGGAATAG-ATTGAAGCTATAAAT-CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
66 AGTGGAA-AGAATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGAAACAGAGCAGAT
*
107001927 CAAAACAAACCTTATCTC-CCTAAAGTTGCAGTGGAGCAGGTTGAAGTCACGGG
130 CAAAACAAACCTTATCTCTCC-AAAGATGCAGTGGAGCAGGTTGAAGTCACGGG
*
107001980 CCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
1 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
* *
107002045 AGTGGAACGAATTGAAGCTATGAATAAACAGATCTTATCTCTCTGAAGTTGAAACAGAGCAGATC
66 AGTGGAAAGAATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGAAACAGAGCAGATC
*
107002110 AAAACAAACCTTATCTCTCCGAAGATGCAGTGGA
131 AAAACAAACCTTATCTCTCCAAAGATGCAGTGGA
107002144 CTGAGACAAG
Statistics
Matches: 150, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
180 1 0.01
181 83 0.55
182 64 0.43
183 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (182 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGC
AGTGGAAAGAATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGAAACAGAGCAGATC
AAAACAAACCTTATCTCTCCAAAGATGCAGTGGAGCAGGTTGAAGTCACGGG
Found at i:107002026 original size:137 final size:137
Alignment explanation
Indices: 107001663--107002019 Score: 493
Period size: 137 Copynumber: 2.6 Consensus size: 137
107001653 AGTCACAAGT
* * * * *
107001663 CTTATCTCACTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTACA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTATTTCCCTGAAGTTGCA
* * *
107001728 GTGGAACAGATTGAAGTTATAAATCATAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAATAGATTGAAGATATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
107001793 AACAAAC
131 AACAAAC
* * * *
107001800 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCTTGAGGTTGCA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTATTTCCCTGAAGTTGCA
* *
107001865 GTGGAATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAATAGATTGAAGATATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
107001930 AACAAAC
131 AACAAAC
** *** *
107001937 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG-TCA-CGGGCCTTATCTCCCTGAAGTTGC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAACCTTATTTCCCTGAAGTTGC
* *
107002000 AGTGGAGTAGACTGAAGATA
65 AGTGGAATAGATTGAAGATA
107002020 GCAAATCTTA
Statistics
Matches: 197, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
136 35 0.18
137 162 0.82
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (137 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAACCTTATTTCCCTGAAGTTGCA
GTGGAATAGATTGAAGATATAAATCACAGATCTTATCTCACTGAAGTTGCAGTAGAGCAGATCAA
AACAAAC
Found at i:107002060 original size:89 final size:85
Alignment explanation
Indices: 107001896--107002061 Score: 199
Period size: 89 Copynumber: 1.9 Consensus size: 85
107001886 AATCACAGAT
*
107001896 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGG
* *
107001961 AGCAGGTTGAAGTCACGGGC
66 AACAGATTGAAGTCACGGGC
* * * * * *
107001981 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TCAA-A-A-CAAACCTTATCTCCCTAAAGTTGCA
107002046 GTGGAAC-GAATTGAAG
62 GTGGAACAG-ATTGAAG
107002062 CTATGAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
85 27 0.40
86 3 0.04
87 1 0.01
88 2 0.03
89 34 0.51
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (85 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAACAAACCTTATCTCCCTAAAGTTGCAGTGG
AACAGATTGAAGTCACGGGC
Found at i:107002061 original size:45 final size:44
Alignment explanation
Indices: 107001894--107002050 Score: 151
Period size: 44 Copynumber: 3.6 Consensus size: 44
107001884 TAAATCACAG
* * *
107001894 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAA
* * * **
107001935 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG-TCACGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAA
** * *
107001979 GCCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAA
*
107002024 ATCTTATTTCCCTGAAGTTGCAGTGGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGA
107002051 ACGAATTGAA
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 27 0.29
42 3 0.03
44 36 0.39
45 26 0.28
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAA
Found at i:107006974 original size:12 final size:12
Alignment explanation
Indices: 107006957--107006987 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
107006947 ACTCGGGGAA
107006957 GAGGCCGTGGTC
1 GAGGCCGTGGTC
107006969 GAGGCCGTGGTC
1 GAGGCCGTGGTC
107006981 GAGGCCG
1 GAGGCCG
107006988 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:107013563 original size:29 final size:30
Alignment explanation
Indices: 107013521--107013582 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
107013511 ACTTAACAAG
107013521 CAAATGCCTCTAAAATAATAA-AAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
107013550 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
107013580 CAA
1 CAA
107013583 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:107014455 original size:29 final size:31
Alignment explanation
Indices: 107014392--107014460 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
107014382 TATGCATATT
* *
107014392 TGGTACATGTACTTTCATAAAATGTCCAATT
1 TGGTACTTGTACTTTCATAAAATGTCCAATA
**
107014423 TGGTACTTGTACTTT-A-AAAATGTTTAATA
1 TGGTACTTGTACTTTCATAAAATGTCCAATA
107014452 TGGTACTTG
1 TGGTACTTG
107014461 AACTATCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.56
30 1 0.03
31 14 0.41
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (31 bp):
TGGTACTTGTACTTTCATAAAATGTCCAATA
Found at i:107017221 original size:43 final size:43
Alignment explanation
Indices: 107016985--107017207 Score: 252
Period size: 43 Copynumber: 5.2 Consensus size: 43
107016975 TTTAAAAAAG
* * *
107016985 GCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTTACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
* * * * *
107017028 GCCACTAAAAACCATGACCTTTAGTGGCGC-TTTCTTAAAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
* * *
107017070 GCCGCTAAAGACCATGACCTTTAGCGGCACTTTTAC-AATAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT-CTCACAAAC
* ** * * *
107017113 GCCGCTAAAGACCACGACCTTTAGCAACGTTTTTCCCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
* *
107017156 GCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCTCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
107017199 GCCGCTAAA
1 GCCGCTAAA
107017208 AATCATAAAC
Statistics
Matches: 151, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
42 37 0.25
43 113 0.75
44 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCACAAAC
Found at i:107017221 original size:86 final size:85
Alignment explanation
Indices: 107016979--107017209 Score: 257
Period size: 85 Copynumber: 2.7 Consensus size: 85
107016969 CGTTTATTTA
* * * * *
107016979 AAAAAGGCCGCTAAAGACCATGACTTTTAGCGGCGCTTTTTTTACAAACGCCACTAAAAACCATG
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTAACAAACGCCGCTAAAAACCATG
*** **
107017044 ACCTTTAGTGGCGCTTTCTT
66 ACCTTTAGCAACGCTTTCCC
* * * *
107017064 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTAC-AATAAACGCCGCTAAAGACCAC
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT-CTAACAAACGCCGCTAAAAACCAT
*
107017128 GACCTTTAGCAACGTTTTTCCC
65 GACCTTTAGCAACG-CTTTCCC
** * * *
107017150 GCAAACGCCGCTAAAGATCACGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAAA
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTAACAAACGCCGCTAAAAA
107017210 TCATAAACTT
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
85 66 0.55
86 54 0.45
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTAACAAACGCCGCTAAAAACCATG
ACCTTTAGCAACGCTTTCCC
Found at i:107017252 original size:21 final size:22
Alignment explanation
Indices: 107017227--107017270 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
107017217 CTTTAAAAAC
107017227 AATATTT-TATTTTA-ATTAAAT
1 AATATTTAT-TTTTATATTAAAT
107017248 AATATTTATTTTTATATTAAAT
1 AATATTTATTTTTATATTAAAT
107017270 A
1 A
107017271 TTATATAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
AATATTTATTTTTATATTAAAT
Found at i:107022914 original size:22 final size:22
Alignment explanation
Indices: 107022875--107022932 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
107022865 CTCTGACCCC
* *
107022875 TAAACCTTAAA-TCATAAAACA
1 TAAACCTTAAACCCCTAAAACA
* *
107022896 TAAACTCTT-AACCCCTAAACCT
1 TAAAC-CTTAAACCCCTAAAACA
107022918 TAAACCTTAAACCCC
1 TAAACCTTAAACCCC
107022933 AACCCCTCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 10 0.33
22 20 0.67
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (22 bp):
TAAACCTTAAACCCCTAAAACA
Found at i:107022967 original size:30 final size:30
Alignment explanation
Indices: 107022896--107022967 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
107022886 TCATAAAACA
* * *
107022896 TAAACTCTTAA-CCCCTAAACCTTAAACCT
1 TAAACCCTTAACCCCCTAAAACTTAAACCC
*
107022925 TAAACCC-CAACCCCTCTAAAACTTAAACCC
1 TAAACCCTTAACCCC-CTAAAACTTAAACCC
107022955 T-AACCCTTAACCC
1 TAAACCCTTAACCC
107022968 ATAAACCATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 14 0.40
30 19 0.54
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.22
Consensus pattern (30 bp):
TAAACCCTTAACCCCCTAAAACTTAAACCC
Found at i:107022976 original size:7 final size:7
Alignment explanation
Indices: 107022966--107023064 Score: 51
Period size: 7 Copynumber: 13.9 Consensus size: 7
107022956 AACCCTTAAC
107022966 CCATAAA
1 CCATAAA
*
107022973 CCATAAT
1 CCATAAA
107022980 CCATAAAA
1 CCAT-AAA
*
107022988 CCATAAT
1 CCATAAA
*
107022995 CTATAAA
1 CCATAAA
*
107023002 CCTTAAA
1 CCATAAA
107023009 --ATAGTAA
1 CCATA--AA
107023016 CTCATAAA
1 C-CATAAA
107023024 -CATTAAA
1 CCA-TAAA
* *
107023031 CCCTTAA
1 CCATAAA
*
107023038 CCATATA
1 CCATAAA
107023045 CCATAAA
1 CCATAAA
*
107023052 CCCTAAA
1 CCATAAA
*
107023059 CTATAA
1 CCATAA
107023065 TGATAATTAA
Statistics
Matches: 67, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
5 2 0.03
6 2 0.03
7 51 0.76
8 9 0.13
10 3 0.04
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.24
Consensus pattern (7 bp):
CCATAAA
Found at i:107022983 original size:14 final size:14
Alignment explanation
Indices: 107022966--107023003 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
107022956 AACCCTTAAC
107022966 CCATAAACCATAAT
1 CCATAAACCATAAT
107022980 CCATAAAACCATAAT
1 CCAT-AAACCATAAT
*
107022995 CTATAAACC
1 CCATAAACC
107023004 TTAAAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
CCATAAACCATAAT
Found at i:107023000 original size:22 final size:22
Alignment explanation
Indices: 107022966--107023064 Score: 53
Period size: 22 Copynumber: 4.6 Consensus size: 22
107022956 AACCCTTAAC
*
107022966 CCATAAACCATAATCCATAAAA
1 CCATAAACCATAAACCATAAAA
* * *
107022988 CCATAATCTATAAACCTTAAAA
1 CCATAAACCATAAACCATAAAA
* *
107023010 -TAGT-AACTCATAAA-CATTAAA
1 CCA-TAAAC-CATAAACCATAAAA
* * *
107023031 CCCTTAACCATATACCAT-AAA
1 CCATAAACCATAAACCATAAAA
* *
107023052 CCCTAAACTATAA
1 CCATAAACCATAA
107023065 TGATAATTAA
Statistics
Matches: 57, Mismatches: 15, Indels: 11
0.69 0.18 0.13
Matches are distributed among these distances:
21 27 0.47
22 30 0.53
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.24
Consensus pattern (22 bp):
CCATAAACCATAAACCATAAAA
Found at i:107023541 original size:41 final size:41
Alignment explanation
Indices: 107023445--107023709 Score: 295
Period size: 40 Copynumber: 6.6 Consensus size: 41
107023435 TTTTTTTGCA
* ** * *
107023445 GCGTTTTTCCAAAAGCGCCTATAAAAACT-GAGCAATAGCG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
* * * *
107023485 GCGTTTTTCCAAAAGCGCCGCTAAGACCTCGATCTATAGTG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
* * *
107023526 GCGTTTTTGCAAAAGCGCCGCTAAAAACT-GAACAATAGCG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
* * *
107023566 GCATTTTTTC-AAAGCGCCGCTAAAACCTCGATCTATAGTG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
* * * * * *
107023606 GCGTTTTTCCAAAAGCACCGCT-AAAATTTGAGCAATAGCG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
* *
107023646 GCGTTTTTTAAAAAGCGCCGCTAAAAGCTCGATCTATAGCG
1 GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
107023687 GCGTTTTTTCAAAAGCGCCGCTA
1 GCGTTTTTTCAAAAGCGCCGCTA
107023710 TTGTTTAGTT
Statistics
Matches: 184, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
39 17 0.09
40 88 0.48
41 79 0.43
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (41 bp):
GCGTTTTTTCAAAAGCGCCGCTAAAAACTCGATCTATAGCG
Found at i:107023552 original size:81 final size:81
Alignment explanation
Indices: 107023445--107023709 Score: 397
Period size: 81 Copynumber: 3.3 Consensus size: 81
107023435 TTTTTTTGCA
** * *
107023445 GCGTTTTTCCAAAAGCGCCTATAAAAACTGAGCAATAGCGGCGTTTTTCCAAAAGCGCCGCTAAG
1 GCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTCAAAAGCGCCGCTAAA
107023510 ACCTCGATCTATAGTG
66 ACCTCGATCTATAGTG
* * *
107023526 GCGTTTTTGCAAAAGCGCCGCTAAAAACTGAACAATAGCGGCATTTTTTC-AAAGCGCCGCTAAA
1 GCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTCAAAAGCGCCGCTAAA
107023590 ACCTCGATCTATAGTG
66 ACCTCGATCTATAGTG
* ** *
107023606 GCGTTTTTCCAAAAGCACCGCTAAAATTTGAGCAATAGCGGCGTTTTTTAAAAAGCGCCGCTAAA
1 GCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTCAAAAGCGCCGCTAAA
* *
107023671 AGCTCGATCTATAGCG
66 ACCTCGATCTATAGTG
*
107023687 GCGTTTTTTCAAAAGCGCCGCTA
1 GCGTTTTTCCAAAAGCGCCGCTA
107023710 TTGTTTAGTT
Statistics
Matches: 165, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 72 0.44
81 93 0.56
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (81 bp):
GCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTTCAAAAGCGCCGCTAAA
ACCTCGATCTATAGTG
Found at i:107023764 original size:41 final size:42
Alignment explanation
Indices: 107023682--107023834 Score: 131
Period size: 41 Copynumber: 3.8 Consensus size: 42
107023672 GCTCGATCTA
** * * *
107023682 TAGCGGCGTTTTTTC-AAAAGCGCCGCTATTG-TTTAGTTTT
1 TAGCGGCGTTTTAACTAAAAACGCCACTATTGCTGTAGTTTT
107023722 TAGCGGCGTTTTAACTAAAAACGCCACTATTGCTGTA-TTTT
1 TAGCGGCGTTTTAACTAAAAACGCCACTATTGCTGTAGTTTT
** *
107023763 TAGCGGCGTTTGGA-TCAAAAACGCCACTATTGCT-CAGCTTTT
1 TAGCGGCGTTTTAACT-AAAAACGCCACTATTGCTGTAG-TTTT
* ** *
107023805 T-GCAGCGTTTTAA-TGCAAATGCCACTATTG
1 TAGCGGCGTTTTAACTAAAAACGCCACTATTG
107023835 TATAATATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
40 28 0.30
41 58 0.62
42 8 0.09
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (42 bp):
TAGCGGCGTTTTAACTAAAAACGCCACTATTGCTGTAGTTTT
Found at i:107023814 original size:82 final size:80
Alignment explanation
Indices: 107023682--107023834 Score: 182
Period size: 82 Copynumber: 1.9 Consensus size: 80
107023672 GCTCGATCTA
** * * * * *
107023682 TAGCGGCGTTTTTTCAAAAGCGCCGCTATTGTTTAGTTTTTAGCGGCGTTTTAACTAAAAACGCC
1 TAGCGGCGTTTGATCAAAAACGCCACTATTGCTCAGTTTTTAGCAGCGTTTTAA-TAAAAACGCC
107023747 ACTATTGCTGTATTTT
65 ACTATTGCTGTATTTT
** *
107023763 TAGCGGCGTTTGGATCAAAAACGCCACTATTGCTCAGCTTTTT-GCAGCGTTTTAATGCAAATGC
1 TAGCGGCGTTT-GATCAAAAACGCCACTATTGCTCAG-TTTTTAGCAGCGTTTTAATAAAAACGC
107023827 CACTATTG
64 CACTATTG
107023835 TATAATATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
81 25 0.42
82 30 0.50
83 5 0.08
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (80 bp):
TAGCGGCGTTTGATCAAAAACGCCACTATTGCTCAGTTTTTAGCAGCGTTTTAATAAAAACGCCA
CTATTGCTGTATTTT
Found at i:107028797 original size:10 final size:10
Alignment explanation
Indices: 107028778--107028817 Score: 64
Period size: 10 Copynumber: 4.0 Consensus size: 10
107028768 TTAAATTCTA
107028778 AAAGATAAAT
1 AAAGATAAAT
107028788 ACAA-ATAAAT
1 A-AAGATAAAT
107028798 AAAGATAAAT
1 AAAGATAAAT
107028808 AAAGATAAAT
1 AAAGATAAAT
107028818 TCTAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 24 0.86
11 2 0.07
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:107029635 original size:96 final size:97
Alignment explanation
Indices: 107029455--107029641 Score: 304
Period size: 96 Copynumber: 1.9 Consensus size: 97
107029445 AATTAATTAA
* **
107029455 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAATATATCAAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
* *
107029520 CCCCGGTTACTCAGTCCAACACATTCCTAATT
66 CCCCAGTTACTCAGCCCAACACATTCCTAATT
* *
107029552 TTTATTTTT-CTTAAGAATATATCAAACCTTTTGACGCGAAGAGAGATGACAGCCAAGTACCTCA
1 TTTATTTTTACTTAAGAATATATCAAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
107029616 CCCCAGTTACTCAGCCCAACACATTC
66 CCCCAGTTACTCAGCCCAACACATTC
107029642 TTAAAAATTA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 74 0.89
97 9 0.11
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAATATATCAAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
CCCCAGTTACTCAGCCCAACACATTCCTAATT
Found at i:107030830 original size:13 final size:13
Alignment explanation
Indices: 107030791--107030870 Score: 52
Period size: 13 Copynumber: 6.6 Consensus size: 13
107030781 ATATCCAAAG
107030791 AAAATAAAGTAAT
1 AAAATAAAGTAAT
*
107030804 -AAAT--AGTAAA
1 AAAATAAAGTAAT
107030814 AAAATAAAGTAAT
1 AAAATAAAGTAAT
107030827 AAAA-AAA-T-AT
1 AAAATAAAGTAAT
*
107030837 AAAAATAAAAT-AT
1 -AAAATAAAGTAAT
107030850 AAAA-ATAAGATAA-
1 AAAATA-AAG-TAAT
107030863 AAAATAAA
1 AAAATAAA
107030871 AATTGGGTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
10 7 0.13
11 10 0.19
12 16 0.30
13 19 0.35
14 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (13 bp):
AAAATAAAGTAAT
Found at i:107030831 original size:16 final size:15
Alignment explanation
Indices: 107030801--107030870 Score: 61
Period size: 16 Copynumber: 4.4 Consensus size: 15
107030791 AAAATAAAGT
*
107030801 AATAAATAGTAAAAA
1 AATAAATAATAAAAA
107030816 AATAAAGTAATAAAAA
1 AATAAA-TAATAAAAA
*
107030832 AATATAAAAATAAAATA
1 AATA-AATAATAAAA-A
*
107030849 TAA-AAATAAGATAAAA
1 -AATAAATAATA-AAAA
107030865 AATAAA
1 AATAAA
107030871 AATTGGGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
15 8 0.18
16 28 0.62
17 7 0.16
18 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (15 bp):
AATAAATAATAAAAA
Found at i:107030835 original size:8 final size:8
Alignment explanation
Indices: 107030810--107030872 Score: 56
Period size: 8 Copynumber: 7.8 Consensus size: 8
107030800 TAATAAATAG
107030810 TAAAAAAA
1 TAAAAAAA
**
107030818 TAAAGTAA
1 TAAAAAAA
107030826 TAAAAAAA
1 TAAAAAAA
*
107030834 TATAAAAA
1 TAAAAAAA
*
107030842 T-AAAATA
1 TAAAAAAA
107030849 TAAAAATAA
1 TAAAAA-AA
*
107030858 GATAAAAAA
1 TA-AAAAAA
107030867 TAAAAA
1 TAAAAA
107030873 TTGGGTTGCC
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
7 5 0.12
8 28 0.67
9 5 0.12
10 4 0.10
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (8 bp):
TAAAAAAA
Found at i:107030840 original size:23 final size:22
Alignment explanation
Indices: 107030791--107030864 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 22
107030781 ATATCCAAAG
*
107030791 AAAATAAAGTAATAAATAGTAAA-
1 AAAATAAAGTAATAAA-A-AAAAT
107030814 AAAATAAAGTAATAAAAAAATAT
1 AAAATAAAGTAATAAAAAAA-AT
*
107030837 AAAAATAAAAT-ATAAAAATAAGAT
1 -AAAATAAAGTAATAAAAA-AA-AT
107030861 AAAA
1 AAAA
107030865 AATAAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 27 0.61
24 13 0.30
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAATAAAGTAATAAAAAAAAT
Found at i:107035485 original size:3 final size:3
Alignment explanation
Indices: 107035477--107035683 Score: 72
Period size: 3 Copynumber: 67.7 Consensus size: 3
107035467 GAATTAAATA
* * * * *
107035477 TAT TAT TAT TAT TAT TAT TCT TAC TGT TAT CT-T TAT TAC TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * *
107035522 CAT TGT TAT TAC TACT TCCAT TAT T-T T-T TAT T-T CTAAC TAT TAT
1 TAT TAT TAT TAT TA-T T--AT TAT TAT TAT TAT TAT -T-AT TAT TAT
* * *
107035566 TAT TTT TAT GTAT ATAT TAT TAT T-T ATAT TAT TGT TAT TAT TAC TAT
1 TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * *
107035613 TAT TAAG TAT CT-T TAT TAT TAC TAT TAT T-T TGT TCCT T-T TAT TAT
1 TAT T-AT TAT -TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
* *
107035658 TGTT TAT TAT CAT TA- TAT TAT TAT TA
1 T-AT TAT TAT TAT TAT TAT TAT TAT TA
107035684 CTACCATTAT
Statistics
Matches: 150, Mismatches: 34, Indels: 40
0.67 0.15 0.18
Matches are distributed among these distances:
2 14 0.09
3 116 0.77
4 17 0.11
5 2 0.01
6 1 0.01
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:107035651 original size:25 final size:26
Alignment explanation
Indices: 107035600--107035658 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
107035590 TATATTATTG
107035600 TTATTATTACTATTATTAAGTATC-T
1 TTATTATTACTATTATTAAGTATCTT
**
107035625 TTATTATTACTATTATTTTGT-TCCTT
1 TTATTATTACTATTATTAAGTAT-CTT
107035651 TTATTATT
1 TTATTATT
107035659 GTTTATTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 1 0.03
25 20 0.67
26 9 0.30
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.63
Consensus pattern (26 bp):
TTATTATTACTATTATTAAGTATCTT
Found at i:107038694 original size:14 final size:14
Alignment explanation
Indices: 107038675--107038717 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
107038665 TAGAGCTAAT
107038675 TTAATTTAAAATTA
1 TTAATTTAAAATTA
*
107038689 TTAATTAAAAATTA
1 TTAATTTAAAATTA
107038703 TGCTAATTTTAAAAT
1 T--TAA-TTTAAAAT
107038718 AAAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 14 0.58
16 3 0.12
17 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
TTAATTTAAAATTA
Found at i:107049853 original size:12 final size:12
Alignment explanation
Indices: 107049836--107049861 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
107049826 TAAAAACAAA
107049836 AAAAAGAATTCT
1 AAAAAGAATTCT
107049848 AAAAAGAATTCT
1 AAAAAGAATTCT
107049860 AA
1 AA
107049862 GTTTTTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (12 bp):
AAAAAGAATTCT
Found at i:107049986 original size:14 final size:15
Alignment explanation
Indices: 107049961--107049990 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
107049951 AACAATTAGG
107049961 TTTTAAATATTTATT
1 TTTTAAATATTTATT
107049976 TTTTAAA-ATTTATT
1 TTTTAAATATTTATT
107049990 T
1 T
107049991 GCATGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATATTTATT
Found at i:107050777 original size:17 final size:19
Alignment explanation
Indices: 107050759--107050829 Score: 58
Period size: 23 Copynumber: 3.6 Consensus size: 19
107050749 AAGCCATTTT
107050759 AAAATT-TAAAAATTATTA
1 AAAATTATAAAAATTATTA
107050777 AAAATTCATAAAAATTATAAATA
1 AAAATT-ATAAAAATTAT---TA
* *
107050800 AAATGTTATAAAAGTT-TT-
1 AAA-ATTATAAAAATTATTA
107050818 AAAATTATAAAA
1 AAAATTATAAAA
107050830 TCTTTATTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
17 8 0.18
18 9 0.20
19 1 0.02
20 10 0.23
22 1 0.02
23 13 0.30
24 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (19 bp):
AAAATTATAAAAATTATTA
Found at i:107050796 original size:9 final size:9
Alignment explanation
Indices: 107050759--107050797 Score: 53
Period size: 10 Copynumber: 4.2 Consensus size: 9
107050749 AAGCCATTTT
107050759 AAAATT-TA
1 AAAATTATA
107050767 AAAATTATTA
1 AAAATTA-TA
107050777 AAAATTCATA
1 AAAATT-ATA
107050787 AAAATTATA
1 AAAATTATA
107050796 AA
1 AA
107050798 TAAAATGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 6 0.21
9 5 0.18
10 16 0.57
11 1 0.04
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTATA
Found at i:107052229 original size:41 final size:39
Alignment explanation
Indices: 107052201--107052293 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
107052191 TGTTTGAATG
107052201 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTC
1 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTC
* * * *
107052240 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGC-TTTTC
107052280 AAGAAACGCCACTA
1 AA-AAACGCCACTA
107052294 TAAGTACACC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 31 0.66
40 6 0.13
41 10 0.21
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (39 bp):
AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTC
Found at i:107052246 original size:39 final size:40
Alignment explanation
Indices: 107052201--107052405 Score: 148
Period size: 40 Copynumber: 5.1 Consensus size: 40
107052191 TGTTTGAATG
107052201 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGC-TTTTC
1 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTTC
* * * *
107052240 AAAAACGCCGCTAAAGATTGAGTATTAGCGGCGCTTTTTT
1 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTTC
* * * * * *
107052280 AAGAAACGCCACTATAAGTA-CACCTTTAGCGGCACTTTTTA
1 AA-AAACGCCACTA-AAGAATGAGCATTAGCGGCGCTTTTTC
* * * ** * * *
107052321 AAAAACACCGCTAATGCTTGATCTTTAGTGGCG-TTTTTC
1 AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTTC
* * * *
107052360 AAAAAACGCCGCTAAAG-ATCGAGTACTAGCGGCGCTTTTTT
1 -AAAAACGCCACTAAAGAAT-GAGCATTAGCGGCGCTTTTTC
107052401 AAAAA
1 AAAAA
107052406 TGTCGCTAAT
Statistics
Matches: 127, Mismatches: 32, Indels: 13
0.74 0.19 0.08
Matches are distributed among these distances:
39 39 0.31
40 53 0.42
41 32 0.25
42 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (40 bp):
AAAAACGCCACTAAAGAATGAGCATTAGCGGCGCTTTTTC
Found at i:107052347 original size:40 final size:40
Alignment explanation
Indices: 107052225--107052445 Score: 125
Period size: 40 Copynumber: 5.5 Consensus size: 40
107052215 AGAATGAGCA
* * *
107052225 TTAGCGGCGC-TTTTC-AAAAACGCCGCTAAAGATTGAGT-A
1 TTAGCGGC-CTTTTTCAAAAAACGCCGCTAATGCTTGA-TCT
* * * * ** *
107052264 TTAGCGGCGCTTTTTTAAGAAACGCCACTATAAG-TACACCT
1 TTAGCGGC-CTTTTTCAAAAAACGCCGCTA-ATGCTTGATCT
*
107052305 TTAGCGGCACTTTTT-AAAAAACACCGCTAATGCTTGATCT
1 TTAGCGGC-CTTTTTCAAAAAACGCCGCTAATGCTTGATCT
* * * * *
107052345 TTAGTGGCGTTTTTCAAAAAACGCCGCTAAAGATCGAGTAC-
1 TTAGCGGCCTTTTTCAAAAAACGCCGCTAATGCTTGA-T-CT
* * *
107052386 -TAGCGGCGCTTTTT-TAAAAATGTCGCTAATGCTTGATCT
1 TTAGCGGC-CTTTTTCAAAAAACGCCGCTAATGCTTGATCT
* *
107052425 TTAGTGGCGTTTTTCAAAAAA
1 TTAGCGGCCTTTTTCAAAAAA
107052446 AATTGCAAAA
Statistics
Matches: 138, Mismatches: 32, Indels: 23
0.72 0.17 0.12
Matches are distributed among these distances:
38 1 0.01
39 23 0.17
40 77 0.56
41 33 0.24
42 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (40 bp):
TTAGCGGCCTTTTTCAAAAAACGCCGCTAATGCTTGATCT
Found at i:107052358 original size:80 final size:80
Alignment explanation
Indices: 107052201--107052445 Score: 243
Period size: 80 Copynumber: 3.1 Consensus size: 80
107052191 TGTTTGAATG
* * *
107052201 AAAAACGCCACTAAAGAAT-GAGC-ATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGATTGAGT
1 AAAAACGCCACTAAAG-ATCGA-CTATTAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGA-T
* * *
107052263 -ATTAGCGGCGCTTTTTTA
63 CTTTAGTGGCG-TTTTTCA
* * *
107052281 AGAAACGCCACTATAAG-TAC-ACCT-TTAGCGGCACTTTTTAAAAAACACCGCTAATGCTTGAT
1 AAAAACGCCACTA-AAGAT-CGA-CTATTAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGAT
107052343 CTTTAGTGGCGTTTTTCA
63 CTTTAGTGGCGTTTTTCA
* * * * * *
107052361 AAAAACGCCGCTAAAGATCGAGTACTAGCGGCGCTTTTTTAAAAATGTCGCTAATGCTTGATCTT
1 AAAAACGCCACTAAAGATCGACTATTAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGATCTT
107052426 TAGTGGCGTTTTTCA
66 TAGTGGCGTTTTTCA
107052441 AAAAA
1 AAAAA
107052446 AATTGCAAAA
Statistics
Matches: 137, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
79 6 0.04
80 98 0.72
81 33 0.24
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (80 bp):
AAAAACGCCACTAAAGATCGACTATTAGCGGCGCTTTTTAAAAAACGCCGCTAATGCTTGATCTT
TAGTGGCGTTTTTCA
Found at i:107052852 original size:21 final size:21
Alignment explanation
Indices: 107052806--107052857 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
107052796 TTAATTATCA
* *
107052806 TTATAGTTTAGGGTTTATGAT
1 TTATGGTTAAGGGTTTATGAT
*
107052827 ATATGGTTAAGGGTTTAATG-T
1 TTATGGTTAAGGGTTT-ATGAT
107052848 TTATGAGTTA
1 TTATG-GTTA
107052858 CTATTTTAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGAT
Found at i:107052958 original size:7 final size:7
Alignment explanation
Indices: 107052892--107053005 Score: 79
Period size: 7 Copynumber: 16.0 Consensus size: 7
107052882 GTTTAAAGGT
107052892 GGTTTAAG
1 GGTTT-AG
*
107052900 GG-TTGG
1 GGTTTAG
*
107052906 GGTTTAA
1 GGTTTAG
107052913 GGTTTAG
1 GGTTTAG
*
107052920 GGGTTAG
1 GGTTTAG
*
107052927 GGGTTAGG
1 GGTTTA-G
*
107052935 GGTTAAG
1 GGTTTAG
*
107052942 GG-TGAGG
1 GGTTTA-G
107052949 GGTTTAG
1 GGTTTAG
*
107052956 GGTTTAT
1 GGTTTAG
**
107052963 ATTTTAG
1 GGTTTAG
*
107052970 GGTTTAA
1 GGTTTAG
107052977 GGTTTAG
1 GGTTTAG
*
107052984 GGATTAG
1 GGTTTAG
107052991 GAGTTTAG
1 G-GTTTAG
107052999 GGTTTAG
1 GGTTTAG
107053006 ATTAATTAGT
Statistics
Matches: 82, Mismatches: 19, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
6 5 0.06
7 62 0.76
8 15 0.18
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (7 bp):
GGTTTAG
Found at i:107053157 original size:15 final size:15
Alignment explanation
Indices: 107053139--107053180 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
107053129 TTATTTTAAG
107053139 GTTTATGGATTATGA
1 GTTTATGGATTATGA
*
107053154 GTTTAAGGATTATGA
1 GTTTATGGATTATGA
107053169 -TTTATGG-TTATG
1 GTTTATGGATTATG
107053181 TAAGAGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 5 0.20
14 6 0.24
15 14 0.56
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (15 bp):
GTTTATGGATTATGA
Found at i:107053453 original size:8 final size:8
Alignment explanation
Indices: 107053442--107053493 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
107053432 TGTATTTATT
107053442 TTTAAAAA
1 TTTAAAAA
107053450 TTT-AAAA
1 TTTAAAAA
107053457 TTTAAAAA
1 TTTAAAAA
*
107053465 TTAAAAAA
1 TTTAAAAA
**
107053473 TAAAAAAA
1 TTTAAAAA
* *
107053481 CTTAAAAT
1 TTTAAAAA
107053489 TTTAA
1 TTTAA
107053494 TATTTAATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 7 0.19
8 29 0.81
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (8 bp):
TTTAAAAA
Found at i:107053462 original size:15 final size:15
Alignment explanation
Indices: 107053442--107053505 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
107053432 TGTATTTATT
107053442 TTTAAAAATTTAAAA
1 TTTAAAAATTTAAAA
*
107053457 TTTAAAAATTAAAAAA
1 TTTAAAAATT-TAAAA
** *
107053473 TAAAAAAACTTAAAA
1 TTTAAAAATTTAAAA
* * *
107053488 TTTTAATATTTAATA
1 TTTAAAAATTTAAAA
107053503 TTT
1 TTT
107053506 TAGTTCATAT
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
15 26 0.70
16 11 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAAAATTTAAAA
Found at i:107056735 original size:43 final size:43
Alignment explanation
Indices: 107056644--107056736 Score: 100
Period size: 43 Copynumber: 2.2 Consensus size: 43
107056634 ATATATATTT
* ** *
107056644 TAAAGGTTATATTATTTAGCGGCGTTTGTGGGAAAAGTGTCAC
1 TAAAGGTTATATTATTTAGCAGCGTTTGTGAAAAAAGTGCCAC
* *
107056687 AAAAGGTTATGATT-TTTAGCAGCGTTTGTGAAAAAAGCT-CCGC
1 TAAAGGTTAT-ATTATTTAGCAGCGTTTGTGAAAAAAG-TGCCAC
107056730 TAAAGGT
1 TAAAGGT
107056737 CGTGGTCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
43 37 0.90
44 4 0.10
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (43 bp):
TAAAGGTTATATTATTTAGCAGCGTTTGTGAAAAAAGTGCCAC
Found at i:107056748 original size:43 final size:43
Alignment explanation
Indices: 107056658--107056862 Score: 187
Period size: 43 Copynumber: 4.8 Consensus size: 43
107056648 GGTTATATTA
* * * * * * *
107056658 TTTAGCGGCGTTTGTGGGAAAAGTGTCA-CAAAAGGTTATGATT
1 TTTAGCAGCGTTTGTGAGAAAAGCG-CAGCTAAAGGTCATGGTC
* * * *
107056701 TTTAGCAGCGTTTGTGAAAAAAGCTCCGCTAAAGGTCGTGGTC
1 TTTAGCAGCGTTTGTGAGAAAAGCGCAGCTAAAGGTCATGGTC
* * * * * *
107056744 TTTAGCGGCGTTTTTGAGAAAAGCGCTGTTAAAAGTCATGGCC
1 TTTAGCAGCGTTTGTGAGAAAAGCGCAGCTAAAGGTCATGGTC
* * *
107056787 TTTAGCGGCGTTTTTTAGAAAAGCGCAGCTAAAGGTCATGGTC
1 TTTAGCAGCGTTTGTGAGAAAAGCGCAGCTAAAGGTCATGGTC
* * *
107056830 TTTAGCAGCATTTGTGGGAAAAGCGCTGCTAAA
1 TTTAGCAGCGTTTGTGAGAAAAGCGCAGCTAAA
107056863 AATCACGGTG
Statistics
Matches: 130, Mismatches: 31, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
42 1 0.01
43 129 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (43 bp):
TTTAGCAGCGTTTGTGAGAAAAGCGCAGCTAAAGGTCATGGTC
Found at i:107056877 original size:43 final size:43
Alignment explanation
Indices: 107056740--107056885 Score: 112
Period size: 43 Copynumber: 3.4 Consensus size: 43
107056730 TAAAGGTCGT
* * * * * * * *
107056740 GGTCTTTAGCGGCGTTTTTGAGAAAAGCGCTGTTAAAAGTCAT
1 GGTCTTTAGCAGCATTTGTGGGAAAAGCGCAGCTAAAAATCAC
* * * * ** ** *
107056783 GGCCTTTAGCGGCGTTTTTTAGAAAAGCGCAGCTAAAGGTCAT
1 GGTCTTTAGCAGCATTTGTGGGAAAAGCGCAGCTAAAAATCAC
*
107056826 GGTCTTTAGCAGCATTTGTGGGAAAAGCGCTGCTAAAAATCAC
1 GGTCTTTAGCAGCATTTGTGGGAAAAGCGCAGCTAAAAATCAC
* *
107056869 GGTGTTTAGCGGCATTT
1 GGTCTTTAGCAGCATTT
107056886 TTGTAAATAA
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GGTCTTTAGCAGCATTTGTGGGAAAAGCGCAGCTAAAAATCAC
Found at i:107056877 original size:86 final size:86
Alignment explanation
Indices: 107056701--107056888 Score: 223
Period size: 86 Copynumber: 2.2 Consensus size: 86
107056691 GGTTATGATT
* * * * * * * *
107056701 TTTAGCAGCGTTTGTGAAAAAAGCTCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTTTGAGAAAA
1 TTTAGCGGCGTTTTTGAAAAAAGCGCAGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGAGAAAA
* * *
107056766 GCGCTGTTAAAAGTCATGGCC
66 GCGCTGCTAAAAATCACGGCC
* * *
107056787 TTTAGCGGCGTTTTTTAGAAAAGCGCAGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGGGAAAA
1 TTTAGCGGCGTTTTTGAAAAAAGCGCAGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGAGAAAA
**
107056852 GCGCTGCTAAAAATCACGGTG
66 GCGCTGCTAAAAATCACGGCC
*
107056873 TTTAGCGGCATTTTTG
1 TTTAGCGGCGTTTTTG
107056889 TAAATAAACG
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (86 bp):
TTTAGCGGCGTTTTTGAAAAAAGCGCAGCTAAAGGTCATGGTCTTTAGCAGCATTTGTGAGAAAA
GCGCTGCTAAAAATCACGGCC
Found at i:107057054 original size:18 final size:17
Alignment explanation
Indices: 107057023--107057056 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
107057013 TCCTGTAGTG
107057023 CTACCAAAAATAAATTC
1 CTACCAAAAATAAATTC
*
107057040 CTACTCAAAAGTAAATT
1 CTAC-CAAAAATAAATT
107057057 TACAAATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (17 bp):
CTACCAAAAATAAATTC
Found at i:107057197 original size:22 final size:24
Alignment explanation
Indices: 107057158--107057207 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
107057148 TTATAAAACT
107057158 AAAATTAAAACTATAAC-TAA-AG
1 AAAATTAAAACTATAACTTAATAG
*
107057180 AAAATTAAAATTCA-AACTTAATAG
1 AAAATTAAAACT-ATAACTTAATAG
107057204 AAAA
1 AAAA
107057208 ACAATAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.58
23 4 0.17
24 6 0.25
ACGTcount: A:0.64, C:0.08, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTAAAACTATAACTTAATAG
Found at i:107067281 original size:25 final size:25
Alignment explanation
Indices: 107067247--107067297 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
107067237 TTCATAGTCT
107067247 AGTAAGTCATTATAAATAAATATGA
1 AGTAAGTCATTATAAATAAATATGA
*
107067272 AGTAAGTCATTATAAATAAGTATGA
1 AGTAAGTCATTATAAATAAATATGA
107067297 A
1 A
107067298 ATAAATGCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.31
Consensus pattern (25 bp):
AGTAAGTCATTATAAATAAATATGA
Found at i:107067495 original size:74 final size:74
Alignment explanation
Indices: 107067416--107067558 Score: 241
Period size: 74 Copynumber: 1.9 Consensus size: 74
107067406 GTATCTATAT
* *
107067416 ATATATAGATTAGTTTTATTGAAAAGATTGGGAAACACACAGAAAGTGTCCATTAAGAGAAAACA
1 ATATATAGATTAGTTTTATTGAAAAGATAGGGAAACACACAGAAAGTGTCCATTAAGACAAAACA
107067481 CACACACAC
66 CACACACAC
* * *
107067490 ATATATATATTAGTTTTATTGAAAAGATAGGGAAACACACGGAAAGTGTCCATTAAGTCAAAACA
1 ATATATAGATTAGTTTTATTGAAAAGATAGGGAAACACACAGAAAGTGTCCATTAAGACAAAACA
107067555 CACA
66 CACA
107067559 AGGGCCACCT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.24
Consensus pattern (74 bp):
ATATATAGATTAGTTTTATTGAAAAGATAGGGAAACACACAGAAAGTGTCCATTAAGACAAAACA
CACACACAC
Found at i:107072164 original size:21 final size:21
Alignment explanation
Indices: 107072138--107072178 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107072128 ATCTGCTCAA
* *
107072138 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
107072159 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
107072179 TTGCTCATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:107077068 original size:30 final size:31
Alignment explanation
Indices: 107077000--107077069 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 31
107076990 AATTTTTTAT
* * *
107077000 AATAT-ATATTTATAATTTTTAAATAATTAA
1 AATATAATTTTTATAATTTTTAAAGAAGTAA
* *
107077030 ATTA-AATTTTTATAA-TTTTAAAGAGGTAA
1 AATATAATTTTTATAATTTTTAAAGAAGTAA
107077059 AATATAATTTT
1 AATATAATTTT
107077070 ATCTTTAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (31 bp):
AATATAATTTTTATAATTTTTAAAGAAGTAA
Found at i:107080290 original size:15 final size:14
Alignment explanation
Indices: 107080270--107080299 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
107080260 TCTGCATCTG
107080270 TTTCTTTTTTTCTTT
1 TTTCTTTTTTT-TTT
107080285 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
107080299 T
1 T
107080300 CTAAACATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:107086307 original size:21 final size:21
Alignment explanation
Indices: 107086281--107086321 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
107086271 ATCTGCTCAA
* *
107086281 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
107086302 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
107086322 TTGCTCGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:107095235 original size:57 final size:57
Alignment explanation
Indices: 107095143--107095258 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 57
107095133 AAGTGAAGAG
107095143 TTATTAGTTAAAAAATTGTGTTAATTTTACAAAAAAATTACTATAATCTGTAATCTA
1 TTATTAGTTAAAAAATTGTGTTAATTTTACAAAAAAATTACTATAATCTGTAATCTA
107095200 TTATTAGTTAAAAAAATTGTGTTAATTTTACAAAAAAATTACTATAATCTGTAATCTA
1 TTATTAGTT-AAAAAATTGTGTTAATTTTACAAAAAAATTACTATAATCTGTAATCTA
107095258 T
1 T
107095259 CTATAATCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 9 0.16
58 49 0.84
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (57 bp):
TTATTAGTTAAAAAATTGTGTTAATTTTACAAAAAAATTACTATAATCTGTAATCTA
Found at i:107103328 original size:59 final size:58
Alignment explanation
Indices: 107103255--107103453 Score: 206
Period size: 59 Copynumber: 3.3 Consensus size: 58
107103245 AATACTAAGA
*
107103255 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
* ** * * * * *
107103314 ATTTTATAGTATTATATA-TTATGATTTTAGTAAATTCATATAAGAA-TA-TTTAATATTAAGA
1 ATTTTATA-TATTATATATTTTTG-TTAAATTATATTTA-ATAATAATTATTTTAA-ATT-A-T
*
107103375 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
107103434 ATTTTATAATATTATATATT
1 ATTTTAT-ATATTATATATT
107103454 ATAATTTTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 22
0.73 0.13 0.15
Matches are distributed among these distances:
58 12 0.11
59 45 0.41
60 14 0.13
61 28 0.25
62 11 0.10
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.55
Consensus pattern (58 bp):
ATTTTATATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
Found at i:107103397 original size:18 final size:17
Alignment explanation
Indices: 107103375--107103509 Score: 95
Period size: 18 Copynumber: 8.0 Consensus size: 17
107103365 AATATTAAGA
107103375 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
107103392 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
107103408 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
107103422 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
107103441 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
107103457 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
107103475 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
107103492 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
107103510 TTAATAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 9 0.10
17 20 0.22
18 41 0.45
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:107103405 original size:120 final size:120
Alignment explanation
Indices: 107103233--107103475 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
107103223 TGATACAATC
107103233 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* *
107103298 AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
*
107103353 ATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
107103418 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
66 AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
107103473 ATA
1 ATA
107103476 TTTTATTAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTTAAATTATATTTTATAATATTATATATTATAATTTTAGTAAATTCAT
Found at i:107103428 original size:26 final size:25
Alignment explanation
Indices: 107103390--107103448 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
107103380 ATTAAATTAT
*
107103390 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
107103416 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
107103442 ATATTAT
1 ATATTAT
107103449 ATATTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:107103447 original size:15 final size:15
Alignment explanation
Indices: 107103403--107103458 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
107103393 TTTTTGTTAA
*
107103403 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
107103418 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
107103429 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
107103444 ATTATATATTATAAT
1 ATTATATTTTATAAT
107103459 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.15
13 5 0.15
14 5 0.15
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:107103476 original size:41 final size:41
Alignment explanation
Indices: 107103254--107103494 Score: 136
Period size: 41 Copynumber: 5.9 Consensus size: 41
107103244 TAATACTAAG
* *
107103254 AATTTTATTAAATTATATATTTTTGTTAA-ATTATAT-TTAAT
1 AATTTTAGTAAATTATATA-TTTT-ATAATATTATATATTAAT
** *
107103295 AATAATTATTTTAAA-T-TATATTTTATAGTATTATATATT-AT
1 AAT--TT-TAGTAAATTATATATTTTATAATATTATATATTAAT
* * *
107103336 GATTTTAGTAAATTCATATA----AGAATATT-TAATATTAAG
1 AATTTTAGTAAATT-ATATATTTTATAATATTAT-ATATTAAT
* *
107103374 AATTTTATTAAATTATATATTTTTGTTAA-ATTATAT-TTAAT
1 AATTTTAGTAAATTATATA-TTTT-ATAATATTATATATTAAT
**
107103415 AATAATTATTTTAAA-T-TATATTTTATAATATTATATATT-AT
1 AAT--TT-TAGTAAATTATATATTTTATAATATTATATATTAAT
107103456 AATTTTAGTAAATTCATATATTTTATTAA-ATTATATATT
1 AATTTTAGTAAATT-ATATATTTTA-TAATATTATATATT
107103495 TTTATTAAAT
Statistics
Matches: 156, Mismatches: 18, Indels: 52
0.69 0.08 0.23
Matches are distributed among these distances:
36 1 0.01
37 16 0.10
38 23 0.15
39 6 0.04
40 5 0.03
41 64 0.41
42 20 0.13
43 9 0.06
44 12 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (41 bp):
AATTTTAGTAAATTATATATTTTATAATATTATATATTAAT
Found at i:107103696 original size:21 final size:21
Alignment explanation
Indices: 107103672--107103726 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
107103662 TACCACTGTT
107103672 TCTAATCTCACTGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
107103693 TCTAATCTCACCGCTACAGTA
1 TCTAATCTCACTGCTACAGTA
*
107103714 CCTAATCTCACTG
1 TCTAATCTCACTG
107103727 TCACCGCTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (21 bp):
TCTAATCTCACTGCTACAGTA
Found at i:107110693 original size:13 final size:13
Alignment explanation
Indices: 107110675--107110709 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
107110665 TTAGCATTGT
*
107110675 TTTTGAAAAATGC
1 TTTTGAAAAATAC
*
107110688 TTTTGAAAAATAT
1 TTTTGAAAAATAC
107110701 TTTTGAAAA
1 TTTTGAAAA
107110710 GTTTAATGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (13 bp):
TTTTGAAAAATAC
Done.