Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 335 of 356
Found at i:107647232 original size:17 final size:17
Alignment explanation
Indices: 107647210--107647242 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
107647200 TAAAAATTTA
107647210 TATTTTTTTATATTTTT
1 TATTTTTTTATATTTTT
*
107647227 TATTTTTTTGTATTTT
1 TATTTTTTTATATTTT
107647243 CTTTTATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TATTTTTTTATATTTTT
Found at i:107647234 original size:19 final size:20
Alignment explanation
Indices: 107647206--107647254 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
107647196 AAGGTAAAAA
107647206 TTTATATTTTTT-TATATT-T
1 TTTAT-TTTTTTGTATATTCT
*
107647225 TTTATTTTTTTGTATTTTCT
1 TTTATTTTTTTGTATATTCT
107647245 TTTATGTTTT
1 TTTAT-TTTT
107647255 AATATATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 6 0.23
19 10 0.38
20 6 0.23
21 4 0.15
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (20 bp):
TTTATTTTTTTGTATATTCT
Found at i:107652137 original size:14 final size:16
Alignment explanation
Indices: 107652108--107652139 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
107652098 AATTTTATTT
107652108 TATTAATTCAAAATAA
1 TATTAATTCAAAATAA
107652124 TATT-ATTC-AAATAA
1 TATTAATTCAAAATAA
107652138 TA
1 TA
107652140 ACCAACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
TATTAATTCAAAATAA
Found at i:107660107 original size:15 final size:15
Alignment explanation
Indices: 107660059--107660114 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
107660049 TATAATATTA
* *
107660059 AATTTAATCTTTAAT
1 AATTTAATTTTTTAT
*
107660074 -ATTTACATATTTTATT
1 AATTTA-ATTTTTTA-T
107660090 AATTTAATTTTTTAT
1 AATTTAATTTTTTAT
*
107660105 AATTAAATTT
1 AATTTAATTT
107660115 GATCTTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 5 0.15
15 16 0.47
16 8 0.24
17 5 0.15
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTTAATTTTTTAT
Found at i:107662477 original size:22 final size:23
Alignment explanation
Indices: 107662452--107662508 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
107662442 ATTTTTTGAG
107662452 TTAAAATTTAATTTTAT-TATTA
1 TTAAAATTTAATTTTATATATTA
*
107662474 TT-AAATTAAAATTTTATATATTA
1 TTAAAATT-TAATTTTATATATTA
*
107662497 TAAAAAATTTAA
1 T-TAAAATTTAA
107662509 ATGAATTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 5 0.18
22 10 0.36
23 6 0.21
24 2 0.07
25 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAAAATTTAATTTTATATATTA
Found at i:107674946 original size:18 final size:18
Alignment explanation
Indices: 107674923--107675012 Score: 153
Period size: 18 Copynumber: 5.0 Consensus size: 18
107674913 CCCAACTACT
*
107674923 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
107674941 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
107674959 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* *
107674977 GTATACATGAATAGTACT
1 GTATACGTGAATAGTACC
107674995 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
107675013 ATAAACGGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:107677782 original size:94 final size:94
Alignment explanation
Indices: 107677659--107677850 Score: 375
Period size: 94 Copynumber: 2.0 Consensus size: 94
107677649 TGTTGCTTGA
107677659 TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
1 TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
107677724 ATATTAGTACCCAAATCGCAGGAACTTAG
66 ATATTAGTACCCAAATCGCAGGAACTTAG
107677753 TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
1 TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
*
107677818 ATATTAGTACCCGAATCGCAGGAACTTAG
66 ATATTAGTACCCAAATCGCAGGAACTTAG
107677847 TAAG
1 TAAG
107677851 TCTCTTTTCA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 97 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (94 bp):
TAAGAATTTAAACCCTAAAATATCCGATTTCGGTTTGGCCAAGCTTGATGAAGAAAATAATACCC
ATATTAGTACCCAAATCGCAGGAACTTAG
Found at i:107679263 original size:17 final size:17
Alignment explanation
Indices: 107679243--107679278 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
107679233 GTTATATCAC
107679243 TTGAATAGTTATTTTTA
1 TTGAATAGTTATTTTTA
107679260 TTGAATAGTTATTTTTA
1 TTGAATAGTTATTTTTA
107679277 TT
1 TT
107679279 TAAGAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (17 bp):
TTGAATAGTTATTTTTA
Found at i:107680186 original size:24 final size:24
Alignment explanation
Indices: 107680159--107680256 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
107680149 TGGCAGGTTT
* *
107680159 AATTTTTTTAATTAAACTTAAATA
1 AATTTATTCAATTAAACTTAAATA
* ** *
107680183 AATTTATTCAATTCAAATTTTAGGTTT
1 AATTTATTCAATT-AAA-CTTA-AATA
* * *
107680210 AATTTTTTTAATTTAACTTAAATA
1 AATTTATTCAATTAAACTTAAATA
* *
107680234 AATTTATTCAATTCAATTTAAAT
1 AATTTATTCAATTAAACTTAAAT
107680257 TTTATTTTAC
Statistics
Matches: 54, Mismatches: 17, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
24 31 0.57
25 6 0.11
26 5 0.09
27 12 0.22
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTTATTCAATTAAACTTAAATA
Found at i:107680260 original size:56 final size:51
Alignment explanation
Indices: 107680153--107680249 Score: 185
Period size: 51 Copynumber: 1.9 Consensus size: 51
107680143 TAAATGTGGC
107680153 AGGTTTAATTTTTTTAATTAAACTTAAATAAATTTATTCAATTCAAATTTT
1 AGGTTTAATTTTTTTAATTAAACTTAAATAAATTTATTCAATTCAAATTTT
*
107680204 AGGTTTAATTTTTTTAATTTAACTTAAATAAATTTATTCAATTCAA
1 AGGTTTAATTTTTTTAATTAAACTTAAATAAATTTATTCAATTCAA
107680250 TTTAAATTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (51 bp):
AGGTTTAATTTTTTTAATTAAACTTAAATAAATTTATTCAATTCAAATTTT
Found at i:107680597 original size:5 final size:6
Alignment explanation
Indices: 107680580--107680605 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
107680570 ATTTTTAATT
107680580 ATAAAA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA ATAAAA ATAAAA AT
107680606 TATTCTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:107680823 original size:24 final size:24
Alignment explanation
Indices: 107680791--107680842 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
107680781 ACCCAATCTT
107680791 TCAACCCATTTTT-TTCCATTCATA
1 TCAACCCATTTTTGTT-CATTCATA
107680815 TCAACCCATTTTTGTTCATTCATA
1 TCAACCCATTTTTGTTCATTCATA
107680839 TCAA
1 TCAA
107680843 GTTAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.27, C:0.27, G:0.02, T:0.44
Consensus pattern (24 bp):
TCAACCCATTTTTGTTCATTCATA
Found at i:107682909 original size:21 final size:19
Alignment explanation
Indices: 107682884--107682939 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 19
107682874 TGCCACGTGT
107682884 TTTTTAAATATATTTATAGTA
1 TTTTTAAATATATTTATA--A
107682905 TTTTTAAATATATTTATAA
1 TTTTTAAATATATTTATAA
107682924 TTTAGTTAAATATATT
1 TTT--TTAAATATATT
107682940 ATTTTTGTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.12
21 29 0.88
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTTAAATATATTTATAA
Found at i:107708744 original size:18 final size:18
Alignment explanation
Indices: 107708721--107708813 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
107708711 CCCAACTACT
*
107708721 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
107708739 GTATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
* *
107708757 GTATACGTGAACAGTACT
1 GTATACGTGAATAGTACC
**
107708775 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
107708793 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
107708811 GTA
1 GTA
107708814 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:107708766 original size:36 final size:36
Alignment explanation
Indices: 107708719--107708813 Score: 156
Period size: 36 Copynumber: 2.6 Consensus size: 36
107708709 ATCCCAACTA
107708719 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
1 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
*
107708755 CTGTATACGTGAACAGTACTGTATACGTGAATAGTG
1 CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
*
107708791 -TCGTATACGTGAATAGTACCGTA
1 CT-GTATACGTGAACAGTACCGTA
107708814 AACGGTCGTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 1 0.02
36 54 0.98
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (36 bp):
CTGTATACGTGAACAGTACCGTATACGTGAATAGTG
Found at i:107711957 original size:14 final size:14
Alignment explanation
Indices: 107711938--107711971 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
107711928 ACTTGCACCG
* *
107711938 CTTGCATATTACAA
1 CTTGCAAATCACAA
107711952 CTTGCAAATCACAA
1 CTTGCAAATCACAA
107711966 CTTGCA
1 CTTGCA
107711972 CAATTAGGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.29
Consensus pattern (14 bp):
CTTGCAAATCACAA
Found at i:107718933 original size:609 final size:609
Alignment explanation
Indices: 107717775--107718992 Score: 2391
Period size: 609 Copynumber: 2.0 Consensus size: 609
107717765 GAGAGGTATA
107717775 AGGCAAAAATATCTTCCCTCGAAGACTCAAGGGTTTTGACCAGCATTCCCTTGACAGAGCTAATA
1 AGGCAAAAATATCTTCCCTCGAAGACTCAAGGGTTTTGACCAGCATTCCCTTGACAGAGCTAATA
*
107717840 AATGCTCTTTATGCATAAGAGCAAAGAAGAGCCAGCAGACTGGAGGAGCACCAAGAAGGTGCCTT
66 AATGCTCTTTATGCACAAGAGCAAAGAAGAGCCAGCAGACTGGAGGAGCACCAAGAAGGTGCCTT
107717905 CCAAGCCAAATCCAAGCCAGTCTTGAACACCTCTGCCTACAAAGGTAAGAAGACCTGGAAAGACA
131 CCAAGCCAAATCCAAGCCAGTCTTGAACACCTCTGCCTACAAAGGTAAGAAGACCTGGAAAGACA
*
107717970 AGCCTAAGCTAGAAGCTACAAGAAGTGGGGACCAACCCTGCAGGCATTGCAAAAGGCTTGGTCAT
196 AGCCTAAGCTAGAAGCTACAAGAAGTGGGGACCAACCCTACAGGCATTGCAAAAGGCTTGGTCAT
107718035 CCAGAGAAAAGTTATTGGTTCAGGCTAAATATGCAGTGCCAATACGGCAAAAAGATGGGGCATGT
261 CCAGAGAAAAGTTATTGGTTCAGGCTAAATATGCAGTGCCAATACGGCAAAAAGATGGGGCATGT
107718100 TGAAAGGGTTTGCAAAAACAAGGGCAGACCAAGATAGAACCAACCCCAGCAGCCAAAGGTTAAGG
326 TGAAAGGGTTTGCAAAAACAAGGGCAGACCAAGATAGAACCAACCCCAGCAGCCAAAGGTTAAGG
*
107718165 CTCGAGTAGCAAAAGAAGATAGTGACCATGAGGAGTAAGTTTTTGTTGTGTCATGCTTAGTTGCT
391 CTCGAGTAGCAAAAGAAGATAGTGACCATGAGGAGTAAGTTTTTGTTGTGTCATGCTTAGCTGCT
107718230 CAGGAGAATGTTACAAATGGATGGCTCATAGACAGTGGTTGCACCAACCATATGACACCAGATGC
456 CAGGAGAATGTTACAAATGGATGGCTCATAGACAGTGGTTGCACCAACCATATGACACCAGATGC
107718295 TTTAATCTTCAAGTTGGTTGATAGAAGTTTCAAAACAAAGGTGAATGTGTGAAATGACCACTTCA
521 TTTAATCTTCAAGTTGGTTGATAGAAGTTTCAAAACAAAGGTGAATGTGTGAAATGACCACTTCA
107718360 TCAAGGCAGAAGGCAAGGGACATG
586 TCAAGGCAGAAGGCAAGGGACATG
107718384 AGGCAAAAATATCTTCCCTCGAAGACTCAAGGGTTTTGACCAGCATTCCCTTGACAGAGCTAATA
1 AGGCAAAAATATCTTCCCTCGAAGACTCAAGGGTTTTGACCAGCATTCCCTTGACAGAGCTAATA
107718449 AATGCTCTTTATGCACAAGAGCAAAGAAGAGCCAGCAGACTGGAGGAGCACCAAGAAGGTGCCTT
66 AATGCTCTTTATGCACAAGAGCAAAGAAGAGCCAGCAGACTGGAGGAGCACCAAGAAGGTGCCTT
107718514 CCAAGCCAAATCCAAGCCAGTCTTGAACACCTCTGCCTACAAAGGTAAGAAGACCTGGAAAGACA
131 CCAAGCCAAATCCAAGCCAGTCTTGAACACCTCTGCCTACAAAGGTAAGAAGACCTGGAAAGACA
107718579 AGCCTAAGCTAGAAGCTACAAGAAGTGGGGACCAACCCTACAGGCATTGCAAAAGGCTTGGTCAT
196 AGCCTAAGCTAGAAGCTACAAGAAGTGGGGACCAACCCTACAGGCATTGCAAAAGGCTTGGTCAT
* *
107718644 CCAGAGAAAATTTATTGGTTCAGGCTAAATATGTAGTGCCAATACGGCAAAAAGATGGGGCATGT
261 CCAGAGAAAAGTTATTGGTTCAGGCTAAATATGCAGTGCCAATACGGCAAAAAGATGGGGCATGT
107718709 TGAAAGGGTTTGCAAAAACAAGGGCAGACCAAGATAGAACCAACCCCAGCAGCCAAAGGTTAAGG
326 TGAAAGGGTTTGCAAAAACAAGGGCAGACCAAGATAGAACCAACCCCAGCAGCCAAAGGTTAAGG
107718774 CTCGAGTAGCAAAAGAAGATAGTGACCATGAGGAGTAAGTTTTTGTTGTGTCATGCTTAGCTGCT
391 CTCGAGTAGCAAAAGAAGATAGTGACCATGAGGAGTAAGTTTTTGTTGTGTCATGCTTAGCTGCT
107718839 CAGGAGAATGTTACAAATGGATGGCTCATAGACAGTGGTTGCACCAACCATATGACACCAGATGC
456 CAGGAGAATGTTACAAATGGATGGCTCATAGACAGTGGTTGCACCAACCATATGACACCAGATGC
107718904 TTTAATCTTCAAGTTGGTTGATAGAAGTTTCAAAACAAAGGTGAATGTGTGAAATGACCACTTCA
521 TTTAATCTTCAAGTTGGTTGATAGAAGTTTCAAAACAAAGGTGAATGTGTGAAATGACCACTTCA
107718969 TCAAGGCAGAAGGCAAGGGACATG
586 TCAAGGCAGAAGGCAAGGGACATG
107718993 TGCTAATTAG
Statistics
Matches: 604, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
609 604 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.21
Consensus pattern (609 bp):
AGGCAAAAATATCTTCCCTCGAAGACTCAAGGGTTTTGACCAGCATTCCCTTGACAGAGCTAATA
AATGCTCTTTATGCACAAGAGCAAAGAAGAGCCAGCAGACTGGAGGAGCACCAAGAAGGTGCCTT
CCAAGCCAAATCCAAGCCAGTCTTGAACACCTCTGCCTACAAAGGTAAGAAGACCTGGAAAGACA
AGCCTAAGCTAGAAGCTACAAGAAGTGGGGACCAACCCTACAGGCATTGCAAAAGGCTTGGTCAT
CCAGAGAAAAGTTATTGGTTCAGGCTAAATATGCAGTGCCAATACGGCAAAAAGATGGGGCATGT
TGAAAGGGTTTGCAAAAACAAGGGCAGACCAAGATAGAACCAACCCCAGCAGCCAAAGGTTAAGG
CTCGAGTAGCAAAAGAAGATAGTGACCATGAGGAGTAAGTTTTTGTTGTGTCATGCTTAGCTGCT
CAGGAGAATGTTACAAATGGATGGCTCATAGACAGTGGTTGCACCAACCATATGACACCAGATGC
TTTAATCTTCAAGTTGGTTGATAGAAGTTTCAAAACAAAGGTGAATGTGTGAAATGACCACTTCA
TCAAGGCAGAAGGCAAGGGACATG
Found at i:107722725 original size:131 final size:133
Alignment explanation
Indices: 107722570--107722819 Score: 414
Period size: 131 Copynumber: 1.9 Consensus size: 133
107722560 TTTGGCAGTT
* *
107722570 TTTCAATAAAAAAAAGGGGGAGATAATTGGATGCATACAGGGGGAGTCGAGTGTTTTAGTTTATT
1 TTTCAATAAAAAAAAGGGGGAGATAATAGGATGCATACAGGAGGAGTCGAGTGTTTTAGTTTATT
* *
107722635 TGTTTGCTGAAAGCTGATTATATGTATGTTTCTATTGAGAAATTTAAACTTGTGTTGTCGGTTCT
66 TGTTTGATGAAAGCCGATTATATGTATGTTTCTATTGAGAAATTTAAACTTGTGTTGTCGGTTCT
107722700 GGA
131 GGA
* * *
107722703 TTTCAAT-TAAAAAA-GGGGAGATAATAGGATGCATACAGGAGGAGTGGAGTGTTTTGGTTTATT
1 TTTCAATAAAAAAAAGGGGGAGATAATAGGATGCATACAGGAGGAGTCGAGTGTTTTAGTTTATT
*
107722766 TGTTTGATGAAAGCCGATTATATGTATGTTTCTATTGAGAAATTTGAACTTGTG
66 TGTTTGATGAAAGCCGATTATATGTATGTTTCTATTGAGAAATTTAAACTTGTG
107722820 CTGTTGATTC
Statistics
Matches: 109, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
131 96 0.88
132 6 0.06
133 7 0.06
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (133 bp):
TTTCAATAAAAAAAAGGGGGAGATAATAGGATGCATACAGGAGGAGTCGAGTGTTTTAGTTTATT
TGTTTGATGAAAGCCGATTATATGTATGTTTCTATTGAGAAATTTAAACTTGTGTTGTCGGTTCT
GGA
Found at i:107724126 original size:106 final size:107
Alignment explanation
Indices: 107723956--107724157 Score: 370
Period size: 106 Copynumber: 1.9 Consensus size: 107
107723946 AAGCTTTAAG
*
107723956 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
107724021 TTTT-CCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
66 TTTTCCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
* *
107724062 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
107724127 TTTTCCCAAACGCGAAATATTGCCTTATTTA
66 TTTTCCCAAACGCGAAATATTGCCTTATTTA
107724158 GAAAAATTTT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
106 66 0.72
107 26 0.28
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (107 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
Found at i:107726433 original size:21 final size:23
Alignment explanation
Indices: 107726394--107726450 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
107726384 GTTTTAATAT
* *
107726394 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
107726416 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
107726439 TTGGGCTAGGTT
1 TTGGGCTAGGTT
107726451 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:107727095 original size:88 final size:88
Alignment explanation
Indices: 107726940--107728264 Score: 1277
Period size: 88 Copynumber: 15.1 Consensus size: 88
107726930 CGCCATCGTC
* * * * * * * * *
107726940 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAAACAAAATCTGC-ATCGTCGGTCCA
1 GATCTG-TATCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
* * *
107727004 CTTC-CTACCAATATAGGAAGATAG
64 CTTCACCACCAATATAGGAAGACAA
* * * *
107727028 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTG-TATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
*
107727093 TTCACCACCAATATGGGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
* * * ** * *
107727117 GATCTGCATCTTCGATCTACTTCACGCTAATGCATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 GATCTGTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACT
* *
107727182 TCGCCACCAATATGGGAAGACAA
66 TCACCACCAATATAGGAAGACAA
* * * * *
107727205 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTAC
1 GATCTGTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
* * *
107727269 TTCA-CGCCAATACATGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
* *
107727292 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTA
1 GATCTG-TATCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
** * ** *
107727356 CTTCA-TGCTAATGCATGAAGACAA
64 CTTCACCACCAATATAGGAAGACAA
* * * *
107727380 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
1 GATCTG-TATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
* * *
107727444 CTTC-CTACCAATATAGGAAGATAG
64 CTTCACCACCAATATAGGAAGACAA
* * * *
107727468 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTG-TATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
*
107727533 TTCACCACCAATATGGGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
* * * * * *
107727557 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGAAAGATAGGATCTGATATCTTCGATCTAC
1 GATCTGTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
* * *
107727621 TTCA-CGCCAATACATGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
* * * *
107727644 GATCTACTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTA
1 GATCT-GTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
* * ** *
107727708 CTTCA-CGCTAATGCATGAAGACAA
64 CTTCACCACCAATATAGGAAGACAA
* * * * *
107727732 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGGCAAGATCTGCTTTCTTCGATCTA
1 GATCTG-TATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
* *
107727797 CTTCGCCACCAATATGGGAAGACAA
64 CTTCACCACCAATATAGGAAGACAA
* * * * * * *
107727822 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAAATAGGATCTGATATCTTTGATCTAC
1 GATCTGTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
* *
107727886 TTCA--AGCCAATACATGAAGACAA
65 TTCACCA-CCAATATAGGAAGACAA
* * * *
107727909 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCA
1 GATCTG-TATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTA
* * *
107727973 CTTC-CTACCAATATAGGAAGATAG
64 CTTCACCACCAATATAGGAAGACAA
* * * *
107727997 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTG-TATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
*
107728062 TTCACCACCAATATGGGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
* ** * ** * *
107728086 GATCTGCATCTTCGATCTACTTCATGCTAATGCATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 GATCTGTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACT
*
107728151 TCGCCACCAATAT-GGAAGACAA
66 TCACCACCAATATAGGAAGACAA
* * * * *
107728173 GATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTAC
1 GATCTGTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTAC
* * *
107728237 TTCA-CGCCAATACATGAAGACAA
65 TTCACCACCAATATAGGAAGACAA
107728260 GATCT
1 GATCT
107728265 ACTTTAATGA
Statistics
Matches: 1043, Mismatches: 166, Indels: 57
0.82 0.13 0.05
Matches are distributed among these distances:
86 8 0.01
87 204 0.20
88 652 0.63
89 157 0.15
90 22 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (88 bp):
GATCTGTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACT
TCACCACCAATATAGGAAGACAA
Found at i:107727177 original size:132 final size:131
Alignment explanation
Indices: 107726940--107728264 Score: 1326
Period size: 132 Copynumber: 10.0 Consensus size: 131
107726930 CGCCATCGTC
* * * * * * * * * *
107726940 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAAACAAAATCTGC-ATCGTCGGTCCA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* * * * * *
107727004 CTTC--CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAA
65 CTTCGAC-ACCAATAT-GGAAGACAAGATCTG-CATCTTCGATCTACTTCACACCAATATAGGAA
107727067 GACAA
127 GACAA
* * *
107727072 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* * * * *
107727136 CTTC-ACGCTAATGCAT-GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGA
65 CTTCGACACCAAT--ATGGAAGACAAGATCTGC-ATCTTCGATCTACTTC-ACACCAATATAGGA
107727199 AGACAA
126 AGACAA
* * * * *
107727205 GATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* * *
107727268 CTTC-ACGCCAATACAT-GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGA
65 CTTCGACACCAAT--ATGGAAGACAAGATCTGC-ATCTTCGATCTACTTCA-CACCAATATAGGA
107727331 AGACAA
126 AGACAA
** * ** *
107727337 GATCTGC-ATCTTCGATCTACTTCATGCTAATGCATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTAC
* *
107727401 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAGA
66 TTCGACACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCAC-ACCAATATAGGAAGA
* *
107727465 TAG
129 CAA
* * * *
107727468 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTAC
* *
107727533 TTC-ACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGAAAG
66 TTCGA-CACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCAC-ACCAATATAGGAAG
* *
107727596 ATAG
128 ACAA
* * * * *
107727600 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTAC
* * * ** *
107727665 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCACGCTAATGCATGAAGAC
66 TTCGACACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCACACCAATATAGGAAGAC
107727730 AA
130 AA
* * * *
107727732 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGGCAAGATCTGCTTTCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* * *
107727797 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAA
65 CTTCGACACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCAC-ACCAATATAGGAAG
* *
107727861 ATAG
128 ACAA
* * * *
107727865 GATCTGATATCTTTGATCTACTTCA-AGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTCACA-CCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* *
107727929 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTC-CTACCAATATAGGAAG
65 CTTCGACACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCAC-ACCAATATAGGAAG
* *
107727993 ATAG
128 ACAA
* * * *
107727997 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTAC
** * ** *
107728062 TTC-ACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTCATGCTAATGCATGAAGA
66 TTCGA-CACCAATAT-GGAAGACAAGATCTGCATCTTCGATCTACTTCACACCAATATAGGAAGA
107728126 CAA
129 CAA
* * * *
107728129 GATCTGCTTTCTTCGATCTACTTCGCCACCAATAT-GGAAGACAAGATCTGC-ATCTTCGATCCA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTA
* * * * * *
107728192 CTTC--CTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAA
65 CTTCGAC-ACCAATAT-GGAAGACAAGATCTG-CATCTTCGATCTACTTCACACCAATATAGGAA
107728255 GACAA
127 GACAA
107728260 GATCT
1 GATCT
107728265 ACTTTAATGA
Statistics
Matches: 1051, Mismatches: 116, Indels: 53
0.86 0.10 0.04
Matches are distributed among these distances:
129 1 0.00
130 23 0.02
131 97 0.09
132 765 0.73
133 163 0.16
134 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (131 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTAC
TTCGACACCAATATGGAAGACAAGATCTGCATCTTCGATCTACTTCACACCAATATAGGAAGACA
A
Found at i:107727322 original size:220 final size:218
Alignment explanation
Indices: 107726940--107728269 Score: 1595
Period size: 220 Copynumber: 6.0 Consensus size: 218
107726930 CGCCATCGTC
* * * * * *
107726940 GATCTGCTTTCTTCGATCTTCTTCACCACCAGTATGGGAAAACAAAATCTGCATCGTCGGTCCAC
1 GATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
107727005 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
65 TTCCTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
107727070 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCT
130 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCT
*
107727135 ACTTCACGCTAATGCATGAAGACAA
195 ACTTCACGCCAAT-CATGAAGACAA
107727160 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
107727225 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
65 TTCCTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
107727290 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCT
130 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCT
* *
107727355 ACTTCATGCTAATGCATGAAGACAA
195 ACTTCACGCCAAT-CATGAAGACAA
107727380 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
1 GATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* *
107727445 TTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
65 TTCCTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGAC
*
107727510 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCC
130 AAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCT
* * *
107727575 ACTTC-CTACCAAT-ATAGAAAGATAG
195 ACTTCAC-GCCAATCAT-G-AAGACAA
* * * * *** * * *
107727600 GATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCAC
* * * * *
107727665 TTCGCCACCAATATGGGAAGACAAGATCTG-CATCTTCGATCTACTTCACGCTAATGCATGAAGA
65 TTC-CTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGA
* * *
107727729 CAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGGCAAGATCTGCTTTCTTCGAT
129 CAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGAT
* *
107727794 CTACTTCGCCACCAAT-ATGGGAAGACAA
193 CTACTTC-ACGCCAATCAT--GAAGACAA
* * * * * * * * * *
107727822 GATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAAATAGGATCTGATATCTTTGATCTAC
1 GATCTGCTTTCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTG-CATCTTCGATCCAC
* * * * * * * ***
107727886 TT-CAAGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAG
65 TTCCTA-CCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTC-ACGCCAATACATGAAG
* * * * * * *
107727950 ACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGA
128 ACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTG-CATCTTCGA
107728013 TCTACTTCACGCCAATACATGAAGACAA
192 TCTACTTCACGCCAAT-CATGAAGACAA
*
107728041 GATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTAC
1 GATCTGCTTTCTTCGATCTACTTC-CCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCAC
* * * ** * * * * *
107728106 TTCATGCTAATGCATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAAT--ATGGAAG
65 TTCCTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTC-ACGCCAATACAT-GAAG
* * * * * * *
107728169 ACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATATCTTCGA
128 ACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTG-CATCTTCGA
107728232 TCTACTTCACGCCAATACATGAAGACAA
192 TCTACTTCACGCCAAT-CATGAAGACAA
*
107728260 GATCTACTTT
1 GATCTGCTTT
107728270 AATGACTTCA
Statistics
Matches: 997, Mismatches: 93, Indels: 41
0.88 0.08 0.04
Matches are distributed among these distances:
218 2 0.00
219 149 0.15
220 672 0.67
221 133 0.13
222 39 0.04
223 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (218 bp):
GATCTGCTTTCTTCGATCTACTTCCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
TCCTACCAATATAGGAAGACAAGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACA
AGATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTA
CTTCACGCCAATCATGAAGACAA
Found at i:107739614 original size:106 final size:107
Alignment explanation
Indices: 107739444--107739645 Score: 370
Period size: 106 Copynumber: 1.9 Consensus size: 107
107739434 AAGCTTTAAG
*
107739444 AGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
107739509 TTTT-CCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
66 TTTTCCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
* *
107739550 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
107739615 TTTTCCCAAACGCGAAATATTGCCTTATTTA
66 TTTTCCCAAACGCGAAATATTGCCTTATTTA
107739646 GAAAAATTTT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
106 66 0.72
107 26 0.28
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (107 bp):
AGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
TTTTCCCAAACGCGAAATATTGCCTTATTTAAAAGTTTAAAA
Found at i:107741911 original size:22 final size:21
Alignment explanation
Indices: 107741873--107741943 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 21
107741863 GGCTGTTAGG
*
107741873 GTTTTAAGATTTGGGCTCAGGTA
1 GTTTTAGGA-TTGGGCT-AGGTA
*
107741896 GTTTTAGGATTGGGCTAGGTT
1 GTTTTAGGATTGGGCTAGGTA
*
107741917 GGTTTAGGGTATTGGGCTAGGTTA
1 GTTTTA-GG-ATTGGGCTAGG-TA
107741941 GTT
1 GTT
107741944 GGGTTTTGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.22
22 9 0.22
23 19 0.47
24 3 0.08
ACGTcount: A:0.17, C:0.06, G:0.37, T:0.41
Consensus pattern (21 bp):
GTTTTAGGATTGGGCTAGGTA
Found at i:107741922 original size:21 final size:23
Alignment explanation
Indices: 107741883--107741939 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
107741873 GTTTTAAGAT
* *
107741883 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
107741905 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
107741928 TTGGGCTAGGTT
1 TTGGGCTAGGTT
107741940 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:107750459 original size:39 final size:39
Alignment explanation
Indices: 107750369--107750459 Score: 93
Period size: 37 Copynumber: 2.4 Consensus size: 39
107750359 ATTTACGTGC
*
107750369 TATAAAAGTATTATATTATTTTTTAAAAATGTTATATAT
1 TATAAAAGTATTATATTATTTTTTAAAAATATTATATAT
*
107750408 TAT-AAA-TTTTATATTA-TTTTTAATTAAA-ATTACT-TAT
1 TATAAAAGTATTATATTATTTTTTAA--AAATATTA-TATAT
*
107750445 TATAAAAGTGTTATA
1 TATAAAAGTATTATA
107750460 ACCTAATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
36 7 0.16
37 18 0.41
38 10 0.23
39 9 0.20
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (39 bp):
TATAAAAGTATTATATTATTTTTTAAAAATATTATATAT
Found at i:107754261 original size:22 final size:22
Alignment explanation
Indices: 107754231--107754292 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
107754221 GCAACAACAA
*
107754231 TTATTTTTTTTTTTATTT-CTT
1 TTATCTTTTTTTTTATTTCCTT
**
107754252 GTTATCTTTTTTTAAATTTCCTT
1 -TTATCTTTTTTTTTATTTCCTT
*
107754275 TTATCTTTTATTTTATTT
1 TTATCTTTTTTTTTATTT
107754293 TAATTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 30 0.91
23 3 0.09
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.76
Consensus pattern (22 bp):
TTATCTTTTTTTTTATTTCCTT
Found at i:107755845 original size:39 final size:39
Alignment explanation
Indices: 107755802--107755885 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
107755792 CACATGTCAT
107755802 TAAAATCTAATTAAATAAAAT-TTAATAT-T-AATAATAAAA
1 TAAAATCTAATT-AA-AAAATCTTAATATATAAAT-ATAAAA
*
107755841 TAAAATCTAATTAAAAAATCTTATTATATAAATATAAAA
1 TAAAATCTAATTAAAAAATCTTAATATATAAATATAAAA
107755880 TAAAAT
1 TAAAAT
107755886 ATTCCACCCC
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
37 5 0.12
38 8 0.20
39 25 0.61
40 3 0.07
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (39 bp):
TAAAATCTAATTAAAAAATCTTAATATATAAATATAAAA
Found at i:107763906 original size:8 final size:8
Alignment explanation
Indices: 107763881--107763932 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
107763871 TAATGATGTG
*
107763881 AATAATAA
1 AATATTAA
107763889 AATATATAA
1 AATAT-TAA
107763898 AATATT-A
1 AATATTAA
107763905 AATATTAA
1 AATATTAA
*
107763913 AATATCAA
1 AATATTAA
*
107763921 AATATTAG
1 AATATTAA
107763929 AATA
1 AATA
107763933 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (8 bp):
AATATTAA
Found at i:107763908 original size:24 final size:24
Alignment explanation
Indices: 107763880--107763936 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
107763870 ATAATGATGT
*
107763880 GAATAATAAAATATATAAAATATTA
1 GAATAATAAAATAT-CAAAATATTA
*
107763905 -AATATTAAAATATCAAAATATTA
1 GAATAATAAAATATCAAAATATTA
107763928 GAATAATAA
1 GAATAATAA
107763937 TAATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.32
24 19 0.68
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.32
Consensus pattern (24 bp):
GAATAATAAAATATCAAAATATTA
Found at i:107764149 original size:22 final size:24
Alignment explanation
Indices: 107764086--107764150 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
107764076 CGTGATAATA
*
107764086 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
107764111 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
107764134 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
107764151 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:107764201 original size:33 final size:33
Alignment explanation
Indices: 107764139--107764203 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
107764129 TATAGTTAAG
*
107764139 ATATATACATAAGATAACATGTAAAATATATAT
1 ATATATAAATAAGATAACATGTAAAATATATAT
* *
107764172 ATATATAAATAATATAATAT-TAAAGATATATA
1 ATATATAAATAAGATAACATGTAAA-ATATATA
107764204 CATAAAATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (33 bp):
ATATATAAATAAGATAACATGTAAAATATATAT
Found at i:107764203 original size:25 final size:24
Alignment explanation
Indices: 107764172--107764301 Score: 103
Period size: 23 Copynumber: 5.6 Consensus size: 24
107764162 AAATATATAT
*
107764172 ATATATAAATAATATAATATTAAAG
1 ATATATACATAATATAATATT-AAG
* * *
107764197 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAATATTAAG
107764220 ATATATACATAATATAGA-ATTTAA-
1 ATATATACATAATATA-ATA-TTAAG
* * *
107764244 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAATATTAAG
*
107764266 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAATATTAAG
*
107764289 AAATATA-ATAATA
1 ATATATACATAATA
107764302 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.02
22 15 0.18
23 42 0.49
24 7 0.08
25 19 0.22
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (24 bp):
ATATATACATAATATAATATTAAG
Found at i:107764223 original size:23 final size:23
Alignment explanation
Indices: 107764160--107764236 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
107764150 AGATAACATG
*
107764160 TAAAATA-TAT-ATATATATAAA
1 TAAAATAGTATAATATATATACA
* * *
107764181 TAATATAATATTAAAGATATATACA
1 TAAAATAGTA-T-AATATATATACA
107764206 TAAAATAGTATAATATATATACA
1 TAAAATAGTATAATATATATACA
*
107764229 TAATATAG
1 TAAAATAG
107764237 AATTTAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 6 0.13
22 2 0.04
23 19 0.42
24 1 0.02
25 17 0.38
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (23 bp):
TAAAATAGTATAATATATATACA
Found at i:107764258 original size:80 final size:80
Alignment explanation
Indices: 107764100--107764259 Score: 196
Period size: 80 Copynumber: 2.0 Consensus size: 80
107764090 AAATATGTAC
* * *
107764100 ATAATATAGTGTTAAAAATACATACATAATATAGTTAAGATATATACATAAGATAACATGTAAAA
1 ATAATATAATATTAAAAATACATACATAAAATAGTTAAGATATATACATAAGATAACATGTAAAA
*
107764165 TATATATATATATAA
66 TATACATATATATAA
* * * * *
107764180 ATAATATAATATTAAAGATATATACATAAAATAGTATAATATATATACATAATATAGA-ATTTAA
1 ATAATATAATATTAAAAATACATACATAAAATAGT-TAAGATATATACATAAGATA-ACATGTAA
*
107764244 AATATACCTAATATAT
64 AATATACAT-ATATAT
107764260 TAAAAGAATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 30 0.45
81 30 0.45
82 7 0.10
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (80 bp):
ATAATATAATATTAAAAATACATACATAAAATAGTTAAGATATATACATAAGATAACATGTAAAA
TATACATATATATAA
Found at i:107764827 original size:30 final size:30
Alignment explanation
Indices: 107764791--107764876 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
107764781 AGGTACAAGT
* *
107764791 GGTGGTGGAGCAA-GTGTGGTTAGTGGAGTA
1 GGTGGTGGA-AAAGGTGTGGCTAGTGGAGTA
* *
107764821 GGTGGTGGAAAAGGAGTGGCTAGTGGAGTT
1 GGTGGTGGAAAAGGTGTGGCTAGTGGAGTA
107764851 GGTGGTGGAAAAGGTGTGGCTAGTGG
1 GGTGGTGGAAAAGGTGTGGCTAGTGG
107764877 GTTTTGATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
29 2 0.04
30 48 0.96
ACGTcount: A:0.21, C:0.03, G:0.51, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAAAAGGTGTGGCTAGTGGAGTA
Found at i:107768871 original size:4 final size:4
Alignment explanation
Indices: 107768862--107768886 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
107768852 CAAAAAAATG
107768862 ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT A
107768887 ACTTGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:107769667 original size:2 final size:2
Alignment explanation
Indices: 107769660--107769684 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
107769650 GTGTTTCCTC
107769660 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
107769685 AATTATGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107771838 original size:37 final size:37
Alignment explanation
Indices: 107771777--107771898 Score: 156
Period size: 37 Copynumber: 3.2 Consensus size: 37
107771767 AATACATGCA
* *
107771777 TATATATTTTGTGTATATTCTTTTTAATAGATATTATG
1 TATATATTTT-TGTATATTATTTTTAATATATATTATG
*
107771815 TATATATTTTTGTATATTATTTTTAACTTTATATTATG
1 TATATATTTTTGTATATTATTTTTAA-TATATATTATG
* *
107771853 TATATATTTTT-AATATTATATTTTTATATATATTATG
1 TATATATTTTTGTATATTAT-TTTTAATATATATTATG
*
107771890 TACATATTT
1 TATATATTT
107771899 CGAATACTAT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
37 40 0.53
38 35 0.47
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (37 bp):
TATATATTTTTGTATATTATTTTTAATATATATTATG
Found at i:107771863 original size:25 final size:24
Alignment explanation
Indices: 107771823--107771883 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
107771813 TGTATATATT
107771823 TTTGTATATTATTTTTAACT-TTATA
1 TTTGTATA-TATTTTTAA-TATTATA
107771848 TTATGTATATATTTTTAATATTATA
1 TT-TGTATATATTTTTAATATTATA
*
107771873 TTTTTATATAT
1 TTTGTATATAT
107771884 ATTATGTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 9 0.27
25 18 0.55
26 6 0.18
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (24 bp):
TTTGTATATATTTTTAATATTATA
Found at i:107771874 original size:14 final size:12
Alignment explanation
Indices: 107771776--107771886 Score: 57
Period size: 13 Copynumber: 8.8 Consensus size: 12
107771766 TAATACATGC
107771776 ATATATATTTTGT
1 ATATATATTTT-T
* *
107771789 GTATATTCTTTTT
1 ATATA-TATTTTT
* *
107771802 AATAGATATTATGT
1 -ATATATATT-TTT
107771816 ATATAT-TTTTGT
1 ATATATATTTT-T
107771828 ATAT-TATTTTT
1 ATATATATTTTT
* *
107771839 AACTTTATATTATGT
1 -A-TATATATT-TTT
*
107771854 ATATAT-TTTTA
1 ATATATATTTTT
107771865 ATATTATATTTTT
1 ATA-TATATTTTT
107771878 ATATATATT
1 ATATATATT
107771887 ATGTACATAT
Statistics
Matches: 73, Mismatches: 14, Indels: 23
0.66 0.13 0.21
Matches are distributed among these distances:
11 7 0.10
12 23 0.32
13 26 0.36
14 15 0.21
15 2 0.03
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (12 bp):
ATATATATTTTT
Found at i:107771882 original size:26 final size:26
Alignment explanation
Indices: 107771817--107771886 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
107771807 ATATTATGTA
107771817 TATATTTTTGTATATTATTTTTAACTT
1 TATATTTTTGTATA-TATTTTTAACTT
*
107771844 TATA-TTATGTATATATTTTTAA-TAT
1 TATATTTTTGTATATATTTTTAACT-T
*
107771869 TATATTTTTATATATATT
1 TATATTTTTGTATATATT
107771887 ATGTACATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
24 1 0.03
25 14 0.37
26 19 0.50
27 4 0.11
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTTTGTATATATTTTTAACTT
Found at i:107771910 original size:37 final size:36
Alignment explanation
Indices: 107771843--107771925 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 36
107771833 ATTTTTAACT
* ** * *
107771843 TTATATTATGTATATATTTTTAATATTATATTTTTA
1 TTATATTATGTACATATTTCGAATACTATATTATTA
107771879 TATATATTATGTACATATTTCGAATACTATATTATTA
1 T-TATATTATGTACATATTTCGAATACTATATTATTA
107771916 TTATTATTAT
1 TTA-TATTAT
107771926 TTATATATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
36 3 0.08
37 37 0.93
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (36 bp):
TTATATTATGTACATATTTCGAATACTATATTATTA
Found at i:107771981 original size:26 final size:25
Alignment explanation
Indices: 107771945--107771996 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
107771935 TTATCTCATG
* *
107771945 TATATATATTTTTGATAACTATATTA
1 TATATATATTTTTAAT-ACCATATTA
107771971 TATATATATTTTTAATACCATATTA
1 TATATATATTTTTAATACCATATTA
107771996 T
1 T
107771997 GTACGTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (25 bp):
TATATATATTTTTAATACCATATTA
Found at i:107772036 original size:83 final size:78
Alignment explanation
Indices: 107771866--107772038 Score: 170
Period size: 83 Copynumber: 2.1 Consensus size: 78
107771856 ATATTTTTAA
* * *
107771866 TATTATATTTTTATATATATTATGTACATATTTCGAATACTATATTATTATTATTATTATTTATA
1 TATTATATTTTTATATATATTATATACATATTTCGAATACCATATTATTAGTATTATTATTTATA
*
107771931 TATATTATCTCATG
66 TATATTATCTCA-C
* **
107771945 TATATATATTTTTGATAACTATATTATATATATATTTTTAATACCATATTATGTACGTATTATTA
1 TAT-TATATTTTT-AT-A-TATATTATATACATATTTCGAATACCATATTAT-TA-GTATTATTA
* *
107772010 TTATATCTATTTTTATC-C-C
60 TT-TATATA-TATTATCTCAC
107772029 TATTATATTT
1 TATTATATTT
107772039 ATTGTTAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
79 3 0.04
80 9 0.12
81 2 0.03
82 1 0.01
83 35 0.45
84 5 0.06
85 10 0.13
86 6 0.08
87 6 0.08
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.55
Consensus pattern (78 bp):
TATTATATTTTTATATATATTATATACATATTTCGAATACCATATTATTAGTATTATTATTTATA
TATATTATCTCAC
Found at i:107772076 original size:22 final size:21
Alignment explanation
Indices: 107772050--107772097 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
107772040 TTGTTAATAC
107772050 TAGTACATACA-TTTTATTATA
1 TAGTACATACACTTTTA-TATA
* *
107772071 TGAGTATATATACTTTTATATA
1 T-AGTACATACACTTTTATATA
107772093 TAGTA
1 TAGTA
107772098 TTATTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 5 0.22
22 13 0.57
23 5 0.22
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.48
Consensus pattern (21 bp):
TAGTACATACACTTTTATATA
Found at i:107772137 original size:21 final size:21
Alignment explanation
Indices: 107772113--107772164 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
107772103 TTCATACATC
*
107772113 ATTATATTTAGTATTAT-ACCT
1 ATTAT-TTTACTATTATCACCT
*
107772134 ATTATTTTCACTATTATCACTT
1 ATTATTTT-ACTATTATCACCT
107772156 ATTATTTTA
1 ATTATTTTA
107772165 TTTTAATATC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.11
21 13 0.48
22 11 0.41
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTATTTTACTATTATCACCT
Found at i:107772179 original size:22 final size:23
Alignment explanation
Indices: 107772148--107772192 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
107772138 TTTTCACTAT
*
107772148 TATCACTTAT-TATTTTATTTTAA
1 TATCACTTATGTA-TATATTTTAA
107772171 TATCA-TTATGTATATATTTTAA
1 TATCACTTATGTATATATTTTAA
107772193 CATTACTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (23 bp):
TATCACTTATGTATATATTTTAA
Found at i:107772522 original size:15 final size:15
Alignment explanation
Indices: 107772502--107772549 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
107772492 TAGCATGTCA
107772502 TTATTTATATATTTT
1 TTATTTATATATTTT
*
107772517 TTATTTTTAT-TTTT
1 TTATTTATATATTTT
*
107772531 TTATTGTAAATATTGTT
1 TTATT-TATATATT-TT
107772548 TT
1 TT
107772550 TTTTGTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.33
15 12 0.44
16 2 0.07
17 4 0.15
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (15 bp):
TTATTTATATATTTT
Found at i:107772562 original size:30 final size:29
Alignment explanation
Indices: 107772502--107772561 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
107772492 TAGCATGTCA
*
107772502 TTATTTATATATTTTTTATTTTTATTTTT
1 TTATTTAAATATTTTTTATTTTTATTTTT
* *
107772531 TTATTGTAAATATTGTTT-TTTTTGTTTTT
1 TTATT-TAAATATTTTTTATTTTTATTTTT
107772560 TT
1 TT
107772562 TTATCTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (29 bp):
TTATTTAAATATTTTTTATTTTTATTTTT
Found at i:107774614 original size:17 final size:16
Alignment explanation
Indices: 107774592--107774636 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
107774582 ATCATATCTT
107774592 AAAATATAATAGTAA-CA
1 AAAATATAA-A-TAAGCA
107774609 AAAATATAAATAAGCA
1 AAAATATAAATAAGCA
107774625 AGAAATATAAAT
1 A-AAATATAAAT
107774637 CAATAAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.12
16 4 0.15
17 19 0.73
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.22
Consensus pattern (16 bp):
AAAATATAAATAAGCA
Found at i:107777380 original size:26 final size:26
Alignment explanation
Indices: 107777342--107777399 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
107777332 CATGAAATTC
*
107777342 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACACA
* *
107777368 TTATCATGGAACATTTACCTAACATA
1 TTATCATGAAACATTTACCTAACACA
107777394 TTATCA
1 TTATCA
107777400 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACACA
Found at i:107777935 original size:15 final size:15
Alignment explanation
Indices: 107777911--107777953 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
107777901 AAAATATAAT
*
107777911 CATAAAAATAATAGC
1 CATAATAATAATAGC
*
107777926 CATAATAATAATAGT
1 CATAATAATAATAGC
* *
107777941 AATAATAGTAATA
1 CATAATAATAATA
107777954 ATAAAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (15 bp):
CATAATAATAATAGC
Found at i:107778109 original size:3 final size:3
Alignment explanation
Indices: 107777927--107778090 Score: 133
Period size: 3 Copynumber: 55.7 Consensus size: 3
107777917 AATAATAGCC
* * * *
107777927 ATA ATA ATA ATA GTA ATA ATA GTA ATA ATA A-A ATAA AGA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* * * *
107777972 ATA AT- ATA TTG ATA ATA ATA A-A ATCA GGT- ATA ATA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A -ATA ATA ATA ATA ATA ATA
* * * * **
107778016 ACA ATA GT- ATA A-A AAA ATA ATA GTA ATA ACG ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
107778062 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
107778091 GGTTATGGTG
Statistics
Matches: 127, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
2 10 0.08
3 113 0.89
4 3 0.02
5 1 0.01
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:107779862 original size:10 final size:10
Alignment explanation
Indices: 107779843--107779902 Score: 52
Period size: 10 Copynumber: 5.8 Consensus size: 10
107779833 ATAATACTTC
107779843 AAAATA-TAA
1 AAAATATTAA
107779852 AAAATATTAAA
1 AAAATATT-AA
*
107779863 ATAAATATTTTTA
1 A-AAATA--TTAA
*
107779876 ATAA-ATTAA
1 AAAATATTAA
107779885 AAAATATTAA
1 AAAATATTAA
107779895 AAAATATT
1 AAAATATT
107779903 TATACTTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
9 12 0.29
10 14 0.34
11 4 0.10
12 7 0.17
13 2 0.05
14 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATATTAA
Found at i:107779917 original size:31 final size:32
Alignment explanation
Indices: 107779848--107779917 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
107779838 ACTTCAAAAT
*
107779848 ATAAAAAATATTAAAATAAATATTTTTAATAA
1 ATAAAAAATATTAAAATAAATATTTATAATAA
*
107779880 ATTAAAAAATATT-AAA-AAATATTTATACTTAA
1 A-TAAAAAATATTAAAATAAATATTTATA-ATAA
107779912 ATAAAA
1 ATAAAA
107779918 TTAATAATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 15 0.44
32 8 0.24
33 11 0.32
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (32 bp):
ATAAAAAATATTAAAATAAATATTTATAATAA
Found at i:107779958 original size:3 final size:3
Alignment explanation
Indices: 107779950--107779988 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
107779940 ATAATATCTA
*
107779950 AAT AAT AAT AAT AA- AAT AAT AACA AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
107779989 TTTTTGTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 28 0.88
4 2 0.06
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:107779978 original size:24 final size:25
Alignment explanation
Indices: 107779940--107779987 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
107779930 CAAGAGTTAT
*
107779940 ATAATATCTAAATAATAATAATAAA
1 ATAATAACTAAATAATAATAATAAA
107779965 ATAATAAC-AAATAATAATAATAA
1 ATAATAACTAAATAATAATAATAA
107779988 TTTTTTGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
ATAATAACTAAATAATAATAATAAA
Found at i:107787786 original size:32 final size:32
Alignment explanation
Indices: 107787745--107787809 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
107787735 AGAAAAAGTG
107787745 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
1 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
107787777 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
1 AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
107787809 A
1 A
107787810 ATCACCCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
AGAAGTTTAGTTGATCTCTGAGAATCTCAAAC
Found at i:107788425 original size:12 final size:12
Alignment explanation
Indices: 107788410--107788436 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
107788400 GGGTATTGAT
107788410 TGGTATTCCGCA
1 TGGTATTCCGCA
107788422 TGGTATTCCGCA
1 TGGTATTCCGCA
107788434 TGG
1 TGG
107788437 ATCAGAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.30, T:0.33
Consensus pattern (12 bp):
TGGTATTCCGCA
Found at i:107790572 original size:102 final size:102
Alignment explanation
Indices: 107790396--107790600 Score: 401
Period size: 102 Copynumber: 2.0 Consensus size: 102
107790386 AGTTCGTAGG
107790396 TTGGTGGTTCTAGTCCAGAAATGTAAGGATGCTGCAAAGCAACAGGTAGTCTCTCTTTCTCATTT
1 TTGGTGGTTCTAGTCCAGAAATGTAAGGATGCTGCAAAGCAACAGGTAGTCTCTCTTTCTCATTT
107790461 TCTCTTTTGTTGTAGCTTTGATGGTTCAAATTCAGTA
66 TCTCTTTTGTTGTAGCTTTGATGGTTCAAATTCAGTA
*
107790498 TTGGTGGTTCTATTCCAGAAATGTAAGGATGCTGCAAAGCAACAGGTAGTCTCTCTTTCTCATTT
1 TTGGTGGTTCTAGTCCAGAAATGTAAGGATGCTGCAAAGCAACAGGTAGTCTCTCTTTCTCATTT
107790563 TCTCTTTTGTTGTAGCTTTGATGGTTCAAATTCAGTA
66 TCTCTTTTGTTGTAGCTTTGATGGTTCAAATTCAGTA
107790600 T
1 T
107790601 GTACTCCTAT
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 102 1.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (102 bp):
TTGGTGGTTCTAGTCCAGAAATGTAAGGATGCTGCAAAGCAACAGGTAGTCTCTCTTTCTCATTT
TCTCTTTTGTTGTAGCTTTGATGGTTCAAATTCAGTA
Found at i:107799550 original size:26 final size:27
Alignment explanation
Indices: 107799520--107799582 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
107799510 TTAAACCAAA
107799520 TTTTTCAAAAGCACTTT-TCAAAAATAC
1 TTTTTCAAAAGCA-TTTCTCAAAAATAC
* *
107799547 TTTTTC-ACAGCATTTCTCAAAAGTAC
1 TTTTTCAAAAGCATTTCTCAAAAATAC
107799573 -TTTTCAAAAG
1 TTTTTCAAAAG
107799583 TATTACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 8 0.26
26 17 0.55
27 6 0.19
ACGTcount: A:0.37, C:0.19, G:0.06, T:0.38
Consensus pattern (27 bp):
TTTTTCAAAAGCATTTCTCAAAAATAC
Found at i:107799583 original size:13 final size:13
Alignment explanation
Indices: 107799521--107799584 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
107799511 TAAACCAAAT
*
107799521 TTTTCAAAAGCAC
1 TTTTCAAAAGTAC
*
107799534 TTTTCAAAAATAC
1 TTTTCAAAAGTAC
* *
107799547 TTTTTC-ACAGCA-
1 -TTTTCAAAAGTAC
107799559 TTTCTCAAAAGTAC
1 TTT-TCAAAAGTAC
107799573 TTTTCAAAAGTA
1 TTTTCAAAAGTA
107799585 TTACCAAACT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
11 3 0.08
12 2 0.05
13 27 0.68
14 8 0.20
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (13 bp):
TTTTCAAAAGTAC
Found at i:107801452 original size:2 final size:2
Alignment explanation
Indices: 107801445--107801473 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
107801435 GACATGGAGT
107801445 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
107801474 GTAATTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107808113 original size:19 final size:20
Alignment explanation
Indices: 107808073--107808115 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
107808063 TCACGGCAAT
*
107808073 AAATAATTTAAAAATTATAA
1 AAATAATTTAAAAATTAAAA
107808093 AAAT-ATTTAAAAGA-TAAAA
1 AAATAATTTAAAA-ATTAAAA
107808112 AAAT
1 AAAT
107808116 TAAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATAATTTAAAAATTAAAA
Found at i:107810008 original size:30 final size:31
Alignment explanation
Indices: 107809973--107810034 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
107809963 GAAAACCTAA
*
107809973 TGACTT-AATAAAAACTTTCAAATAGTTCAG
1 TGACTTAAATAAAAAATTTCAAATAGTTCAG
**
107810003 TGACTTAAATAAAAAATTTTGAATAGTTCAG
1 TGACTTAAATAAAAAATTTCAAATAGTTCAG
107810034 T
1 T
107810035 AACCGTTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 6 0.21
31 22 0.79
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (31 bp):
TGACTTAAATAAAAAATTTCAAATAGTTCAG
Found at i:107810428 original size:9 final size:9
Alignment explanation
Indices: 107810414--107810517 Score: 57
Period size: 9 Copynumber: 10.6 Consensus size: 9
107810404 TTTAATATTA
107810414 AAAAATTTT
1 AAAAATTTT
107810423 AAAAA-TTT
1 AAAAATTTT
107810431 AAAAATTATT
1 AAAAATT-TT
107810441 AAATAAATTATT
1 -AA-AAATT-TT
107810453 AAATAAATTATT
1 -AA-AAATT-TT
* *
107810465 AACATTATTT
1 AAAAAT-TTT
* *
107810475 AAAAAGTAT
1 AAAAATTTT
*
107810484 AAAAATTATA
1 AAAAATT-TT
107810494 AAAATATTTT
1 AAAA-ATTTT
*
107810504 TAAAATTTT
1 AAAAATTTT
107810513 AAAAA
1 AAAAA
107810518 AATTATTTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
8 8 0.11
9 23 0.30
10 17 0.22
11 8 0.11
12 20 0.26
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:107810450 original size:12 final size:12
Alignment explanation
Indices: 107810433--107810466 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
107810423 AAAAATTTAA
107810433 AAATTATTAAAT
1 AAATTATTAAAT
107810445 AAATTATTAAAT
1 AAATTATTAAAT
107810457 AAATTATTAA
1 AAATTATTAA
107810467 CATTATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAATTATTAAAT
Found at i:107810456 original size:20 final size:19
Alignment explanation
Indices: 107810409--107810529 Score: 61
Period size: 20 Copynumber: 6.1 Consensus size: 19
107810399 AATTTTTTAA
107810409 TATTAAAAAATT-TTAAA-
1 TATTAAAAAATTATTAAAT
* *
107810426 AATTTAAAAATTATTAAATAAAT
1 TA-TTAAAAA--ATT-ATTAAAT
107810449 TATTAAATAAATTATTAACAT
1 TATTAAA-AAATTATTAA-AT
* * *
107810470 TATTTAAAAAGTATAAAAAT
1 TATTAAAAAATTAT-TAAAT
*
107810490 TA-TAAAAATATTTTTAAAAT
1 TATTAAAAA-ATTATT-AAAT
*
107810510 T-TTAAAAAAATTATTTAAT
1 TATT-AAAAAATTATTAAAT
107810529 T
1 T
107810530 GCTAACACGA
Statistics
Matches: 78, Mismatches: 13, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
17 1 0.01
18 7 0.09
19 9 0.12
20 31 0.40
21 18 0.23
22 9 0.12
23 3 0.04
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (19 bp):
TATTAAAAAATTATTAAAT
Found at i:107811308 original size:28 final size:28
Alignment explanation
Indices: 107811276--107811332 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
107811266 CCTCGAACCA
107811276 CTGGTTCTCATTTCAATGTTTGGGATCT
1 CTGGTTCTCATTTCAATGTTTGGGATCT
107811304 CTGGTTCTCATTTCAATGTTTGGGATCT
1 CTGGTTCTCATTTCAATGTTTGGGATCT
107811332 C
1 C
107811333 ATGAAACGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.46
Consensus pattern (28 bp):
CTGGTTCTCATTTCAATGTTTGGGATCT
Found at i:107815155 original size:13 final size:15
Alignment explanation
Indices: 107815126--107815164 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
107815116 ACGATAAAAT
107815126 ATGAAAAAATATAAG
1 ATGAAAAAATATAAG
107815141 ATGAAAAAA-AT-AG
1 ATGAAAAAATATAAG
*
107815154 ATTAAAAAATA
1 ATGAAAAAATA
107815165 AATTCAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 10 0.45
14 3 0.14
15 9 0.41
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (15 bp):
ATGAAAAAATATAAG
Found at i:107815458 original size:7 final size:7
Alignment explanation
Indices: 107815446--107815470 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
107815436 AATATTTAAA
107815446 AAAATTC
1 AAAATTC
107815453 AAAATTC
1 AAAATTC
107815460 AAAATTC
1 AAAATTC
107815467 AAAA
1 AAAA
107815471 ACAATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTC
Found at i:107816856 original size:21 final size:21
Alignment explanation
Indices: 107816832--107816871 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
107816822 TATAATTATC
107816832 TTAG-TTTGAAAATTATTAAAT
1 TTAGTTTTGAAAA-TATTAAAT
107816853 TTAGTTTTGAAAATATTAA
1 TTAGTTTTGAAAATATTAA
107816872 GTTCTCTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.47
Consensus pattern (21 bp):
TTAGTTTTGAAAATATTAAAT
Found at i:107817957 original size:5 final size:5
Alignment explanation
Indices: 107817947--107817971 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
107817937 ATTTAGAGCA
107817947 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
107817972 CCTTTACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:107821871 original size:17 final size:18
Alignment explanation
Indices: 107821851--107821884 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
107821841 TTATAGATAC
107821851 CTCTA-ATAACATTTGTA
1 CTCTATATAACATTTGTA
*
107821868 CTCTATATAATATTTGT
1 CTCTATATAACATTTGT
107821885 CTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.47
Consensus pattern (18 bp):
CTCTATATAACATTTGTA
Found at i:107826494 original size:20 final size:21
Alignment explanation
Indices: 107826455--107826494 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
107826445 GGTGAGAAAG
* *
107826455 AAAATTAAAAAACTTTTGAGA
1 AAAAGTAAAAAACTTATGAGA
107826476 AAAAGTAAAAAAC-TATGAG
1 AAAAGTAAAAAACTTATGAG
107826495 GGAGATTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (21 bp):
AAAAGTAAAAAACTTATGAGA
Found at i:107828568 original size:37 final size:37
Alignment explanation
Indices: 107828509--107828617 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
107828499 AGCTCAGACG
* *
107828509 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
107828546 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
107828583 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
107828618 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:107828879 original size:47 final size:47
Alignment explanation
Indices: 107828820--107828992 Score: 274
Period size: 47 Copynumber: 3.7 Consensus size: 47
107828810 CATACATATT
* *
107828820 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
107828867 TCACATCGGCCATTCGGCCTTATAACACATATGCATACTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
107828914 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
107828961 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
107828993 ACACATAAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:107828939 original size:22 final size:22
Alignment explanation
Indices: 107828913--107828984 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
107828903 ACTCACATTC
107828913 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
107828935 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
107828959 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
107828982 ATC
1 ATC
107828985 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:107837909 original size:19 final size:20
Alignment explanation
Indices: 107837869--107837912 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
107837859 GTTTCTTTTG
* *
107837869 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
107837888 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
107837907 GCATTA
1 GCATTA
107837913 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:107842294 original size:134 final size:134
Alignment explanation
Indices: 107842064--107842597 Score: 1041
Period size: 134 Copynumber: 4.0 Consensus size: 134
107842054 TTGAAGTTAT
107842064 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
107842129 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
66 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
107842194 ATTG
131 ATTG
107842198 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
107842263 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
66 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
107842328 ATTG
131 ATTG
107842332 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
*
107842397 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
66 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
107842462 ATTG
131 ATTG
*
107842466 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAC
1 CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
*
107842531 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAG
66 CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
107842596 AT
131 AT
107842598 CAAAGATGGC
Statistics
Matches: 398, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
134 398 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (134 bp):
CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAC
CACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTGGGCAGTGGAATAGATTGAAG
ATTG
Found at i:107842492 original size:46 final size:46
Alignment explanation
Indices: 107842162--107842757 Score: 232
Period size: 46 Copynumber: 13.2 Consensus size: 46
107842152 ATAACTCTAT
* *
107842162 CTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
107842208 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
107842254 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
* *
107842296 CTCCCTGTATTGGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * ** * *
107842342 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
107842388 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
107842430 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
107842476 CTTCCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
*** * * ** * * *
107842522 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
107842564 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTAC
* * * * ** * * *
107842617 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TAC
*
107842659 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
* ** * * * *
107842705 CTTCCTGTATTTGGCAG-CAAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTAC
107842751 CTCCCTG
1 CTCCCTG
107842758 ATTACAGTGG
Statistics
Matches: 378, Mismatches: 134, Indels: 76
0.64 0.23 0.13
Matches are distributed among these distances:
41 12 0.03
42 40 0.11
43 32 0.08
44 7 0.02
45 78 0.21
46 166 0.44
47 12 0.03
50 16 0.04
51 1 0.00
52 1 0.00
53 10 0.03
54 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:107842584 original size:45 final size:45
Alignment explanation
Indices: 107842533--107842690 Score: 133
Period size: 45 Copynumber: 3.4 Consensus size: 45
107842523 TCCCTGACCA
*
107842533 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * *
107842578 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGG
*
107842628 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
*
107842673 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
107842691 ATTGCAGATC
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 1 0.01
45 32 0.38
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 16 0.19
51 1 0.01
52 2 0.02
53 11 0.13
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:107842596 original size:88 final size:88
Alignment explanation
Indices: 107842479--107842699 Score: 318
Period size: 95 Copynumber: 2.4 Consensus size: 88
107842469 ATCTTGCCTT
* * *
107842479 CCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
107842543 CATTGAAGCCGATAACTCTATCTC
65 CATTGAAGCCGATAACTCTATCTC
*
107842567 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 CCTGTATTTGGCAGTGGAATAGATT---G----AAGATGGCAGATTTTACCTCCCTGACCACAGT
107842632 GGAGTACATTGAAGCCGATAACTCTATCTC
59 GGAGTACATTGAAGCCGATAACTCTATCTC
*
107842662 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGAT
107842700 CTTGCCTTCC
Statistics
Matches: 120, Mismatches: 5, Indels: 16
0.85 0.04 0.11
Matches are distributed among these distances:
88 29 0.24
89 3 0.03
91 1 0.01
92 1 0.01
95 86 0.72
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (88 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTAC
ATTGAAGCCGATAACTCTATCTC
Found at i:107842614 original size:95 final size:95
Alignment explanation
Indices: 107842499--107842692 Score: 370
Period size: 95 Copynumber: 2.0 Consensus size: 95
107842489 GCAGCGAAGC
*
107842499 AGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
107842564 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
107842594 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
107842659 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
107842689 AGAT
1 AGAT
107842693 TGCAGATCTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 97 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:107842621 original size:229 final size:229
Alignment explanation
Indices: 107842365--107842797 Score: 803
Period size: 229 Copynumber: 1.9 Consensus size: 229
107842355 GCAGCGAAGC
107842365 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
107842430 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
107842495 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
107842560 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
107842594 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
107842659 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
** * **
107842724 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTT
131 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
107842789 CTATCTCCC
196 CTATCTCCC
107842798 GGGGCAAGAA
Statistics
Matches: 197, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
229 197 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:107843042 original size:132 final size:132
Alignment explanation
Indices: 107842805--107843576 Score: 1292
Period size: 132 Copynumber: 5.8 Consensus size: 132
107842795 CCCGGGGCAA
* * * * *
107842805 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGATAGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
107842870 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
107842935 GT
131 GT
* * * * * * * *
107842937 GAAGTAGATCGAAGATAGCAGGTCTTATCTTCCGATATTGATAGGAAGTGGATCCAAGACACAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
*
107843002 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
107843067 GT
131 GT
*
107843069 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
107843134 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
107843199 GT
131 GT
*
107843201 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
107843266 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
107843331 GT
131 GT
*
107843333 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATTGGAAGTGGATCGACGACGCAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
* *
107843398 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGTAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
107843463 GT
131 GT
* * * * *
107843465 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
* * * *
107843530 TCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCCGATC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATC
107843577 GACGATGGCA
Statistics
Matches: 609, Mismatches: 31, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 609 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCAAAGATAACAGGTCCTATCTTCCTATAATGATAGGAAGTGGATCGACGACGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:107845643 original size:45 final size:46
Alignment explanation
Indices: 107845576--107845699 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
107845566 CATATGACCT
*
107845576 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
107845619 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
107845665 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
107845700 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:107845682 original size:46 final size:45
Alignment explanation
Indices: 107845576--107845810 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
107845566 CATATGACCT
*
107845576 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
107845619 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
107845665 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
107845702 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
107845739 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
107845776 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
107845811 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:107845703 original size:37 final size:37
Alignment explanation
Indices: 107845661--107845837 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
107845651 AGCTGAAGCT
* **
107845661 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
107845698 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
107845735 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
107845772 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
107845809 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
107845838 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:107853145 original size:45 final size:46
Alignment explanation
Indices: 107853078--107853201 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
107853068 CATATGACCT
*
107853078 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
107853121 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
107853167 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
107853202 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:107853184 original size:46 final size:45
Alignment explanation
Indices: 107853078--107853312 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
107853068 CATATGACCT
*
107853078 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
107853121 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
107853167 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
107853204 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
107853241 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
107853278 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
107853313 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:107853205 original size:37 final size:37
Alignment explanation
Indices: 107853163--107853339 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
107853153 AGCTGAAGCT
* **
107853163 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
107853200 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
107853237 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
107853274 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
107853311 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
107853340 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:107858454 original size:26 final size:24
Alignment explanation
Indices: 107858424--107858473 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
107858414 AAATAAAAAA
*
107858424 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
107858450 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
107858474 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:107858493 original size:21 final size:21
Alignment explanation
Indices: 107858444--107858502 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
107858434 ATAATAAATC
*
107858444 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
107858464 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
107858486 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
107858503 TTCTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:107858579 original size:15 final size:16
Alignment explanation
Indices: 107858549--107858581 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
107858539 AAATGGTTAT
107858549 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
107858566 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
107858581 A
1 A
107858582 AATATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:107864719 original size:3 final size:3
Alignment explanation
Indices: 107864711--107864746 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
107864701 TTTTGTGGTT
107864711 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
107864747 CAAGTTTGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:107867735 original size:56 final size:55
Alignment explanation
Indices: 107867644--107867755 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 55
107867634 AATCATGTGA
107867644 AGGATATGTTCCTATGGATTTTCCATTTTTCCAATTTTCTTTTTTTTATCGAAACT
1 AGGATATGTTCCTATGGATTTTCCATTTTTCCAATTTTC-TTTTTTTATCGAAACT
*
107867700 AGGATATGTTCCTATGGATTTTCCATTTTTTCAATTTTCTTTTTTTATCGAAACT
1 AGGATATGTTCCTATGGATTTTCCATTTTTCCAATTTTCTTTTTTTATCGAAACT
107867755 A
1 A
107867756 ATTTTTTGAT
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
55 17 0.31
56 38 0.69
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (55 bp):
AGGATATGTTCCTATGGATTTTCCATTTTTCCAATTTTCTTTTTTTATCGAAACT
Found at i:107867947 original size:15 final size:15
Alignment explanation
Indices: 107867927--107867958 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
107867917 TGTGGGTTTT
107867927 CCCTGAAAATGATTA
1 CCCTGAAAATGATTA
107867942 CCCTGAAAATGATTA
1 CCCTGAAAATGATTA
107867957 CC
1 CC
107867959 AATAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (15 bp):
CCCTGAAAATGATTA
Found at i:107868576 original size:20 final size:20
Alignment explanation
Indices: 107868551--107868626 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
107868541 AATAAAAGTT
* *
107868551 ATAAAAGTTATTAAATTTTA
1 ATAAAAATTATAAAATTTTA
107868571 ATAAAAATTATAAAATTTT-
1 ATAAAAATTATAAAATTTTA
* * **
107868590 GTAAAATTTTATAAAAATCATA
1 ATAAAA-ATTAT-AAAATTTTA
107868612 A-AAAAATTATAAAAT
1 ATAAAAATTATAAAAT
107868627 GCATCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
19 10 0.22
20 25 0.56
21 10 0.22
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (20 bp):
ATAAAAATTATAAAATTTTA
Found at i:107868594 original size:10 final size:10
Alignment explanation
Indices: 107868549--107868605 Score: 55
Period size: 10 Copynumber: 5.8 Consensus size: 10
107868539 TCAATAAAAG
*
107868549 TTATAAAA-G
1 TTATAAAATT
*
107868558 TTATTAAATT
1 TTATAAAATT
*
107868568 TTAATAAAA-A
1 TT-ATAAAATT
107868578 TTATAAAATT
1 TTATAAAATT
*
107868588 TTGTAAAATT
1 TTATAAAATT
107868598 TTATAAAA
1 TTATAAAA
107868606 ATCATAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
9 13 0.34
10 20 0.53
11 5 0.13
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (10 bp):
TTATAAAATT
Found at i:107868594 original size:29 final size:30
Alignment explanation
Indices: 107868541--107868614 Score: 91
Period size: 29 Copynumber: 2.5 Consensus size: 30
107868531 AATAAAAATC
*
107868541 AATAAAAGTTATAAAAGTTATT-AAATTTT
1 AATAAAAATTATAAAAGTTATTAAAATTTT
*
107868570 AATAAAAATTATAAAA-TTTTGTAAAATTTT
1 AATAAAAATTATAAAAGTTAT-TAAAATTTT
*
107868600 -ATAAAAATCATAAAA
1 AATAAAAATTATAAAA
107868615 AAATTATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 3 0.08
29 30 0.75
30 7 0.17
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.38
Consensus pattern (30 bp):
AATAAAAATTATAAAAGTTATTAAAATTTT
Found at i:107870501 original size:15 final size:16
Alignment explanation
Indices: 107870483--107870512 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
107870473 ATTATTTTTA
107870483 AATAAATTT-TTAATG
1 AATAAATTTGTTAATG
107870498 AATAAATTTGTTAAT
1 AATAAATTTGTTAAT
107870513 ATTAAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (16 bp):
AATAAATTTGTTAATG
Found at i:107870709 original size:17 final size:16
Alignment explanation
Indices: 107870676--107870722 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 16
107870666 ATATTAGTTG
107870676 TTTCATTATTTTTATT
1 TTTCATTATTTTTATT
107870692 TATT-ATTATTTTTAATT
1 T-TTCATTATTTTT-ATT
107870709 TTTCATTATCTTTT
1 TTTCATTAT-TTTT
107870723 TAATATAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 12 0.44
17 11 0.41
18 4 0.15
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTCATTATTTTTATT
Found at i:107870974 original size:12 final size:12
Alignment explanation
Indices: 107870957--107871005 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
107870947 AATAAATATT
107870957 TTTTTATTTTAA
1 TTTTTATTTTAA
*
107870969 TTTTTA-ATTATA
1 TTTTTATTTTA-A
*
107870981 TTTATATTTTAA
1 TTTTTATTTTAA
*
107870993 TTTTAATTTTAA
1 TTTTTATTTTAA
107871005 T
1 T
107871006 ATAATCAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
11 3 0.10
12 24 0.80
13 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTATTTTAA
Found at i:107871066 original size:40 final size:40
Alignment explanation
Indices: 107871022--107871102 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
107871012 AATTTTTATT
107871022 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
** * * * *
107871062 ATATATTTTTTATTTGTTTCTTGTTTTAATATTTGTTTTA
1 ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
107871102 A
1 A
107871103 ATGTATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.25, C:0.02, G:0.10, T:0.63
Consensus pattern (40 bp):
ATATATTTTCAATTTGTGTATTGTTTTAAGAATTGTTTTA
Found at i:107877303 original size:29 final size:30
Alignment explanation
Indices: 107877237--107877304 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
107877227 TTATAATGTG
* *
107877237 ATAACATAAATGACTAAAATGTAACATTTTAA
1 ATAA-ATAAATGACTAAAATATAACA-TTAAA
107877269 AT--ATAAATGACTAAAATATAAC-TTAAA
1 ATAAATAAATGACTAAAATATAACATTAAA
107877296 ATAAATAAA
1 ATAAATAAA
107877305 AATGACTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
27 6 0.19
29 24 0.75
32 2 0.06
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.29
Consensus pattern (30 bp):
ATAAATAAATGACTAAAATATAACATTAAA
Found at i:107882338 original size:20 final size:20
Alignment explanation
Indices: 107882309--107882348 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
107882299 TTGAATTCTA
107882309 AAAGACAAAT-ACAAATAAAT
1 AAAGACAAATGA-AAATAAAT
*
107882329 AAAGATAAATGAAAATAAAT
1 AAAGACAAATGAAAATAAAT
107882349 CATAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.17
Consensus pattern (20 bp):
AAAGACAAATGAAAATAAAT
Found at i:107883095 original size:16 final size:16
Alignment explanation
Indices: 107883076--107883106 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
107883066 TTTTATGAAC
*
107883076 AATAAACATATATATA
1 AATAAAAATATATATA
107883092 AATAAAAATATATAT
1 AATAAAAATATATAT
107883107 TATTTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
AATAAAAATATATATA
Found at i:107887308 original size:5 final size:5
Alignment explanation
Indices: 107887298--107887323 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
107887288 ACATTTTTGG
107887298 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
107887324 CAATTCACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:107892852 original size:20 final size:20
Alignment explanation
Indices: 107892827--107892876 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
107892817 TGGCTTAAAA
107892827 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
107892847 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
107892864 GTGGTAGTGGATT
1 TTGGTAGTGGATT
107892877 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:107897491 original size:20 final size:20
Alignment explanation
Indices: 107897466--107897515 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
107897456 TGGCTTAAAA
107897466 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
107897486 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
107897503 GTGGTAGTGGATT
1 TTGGTAGTGGATT
107897516 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:107898519 original size:52 final size:52
Alignment explanation
Indices: 107898440--107898562 Score: 201
Period size: 52 Copynumber: 2.3 Consensus size: 52
107898430 TAATTGTTTT
* *
107898440 TTATAAGAAAATTAAAAGGTTACTCTCTCTTTTCATTTGCTATTTTGTCCAAA
1 TTAT-AGAAAATCAAAAGGTTACTCTCTCTTCTCATTTGCTATTTTGTCCAAA
107898493 TTATAGAAAATCAAAAGGTTACTCTCTCTTCTCATTTGCTATTTTGTCCAAA
1 TTATAGAAAATCAAAAGGTTACTCTCTCTTCTCATTTGCTATTTTGTCCAAA
107898545 TTATAGATAAATACAAAA
1 TTATAGA-AAAT-CAAAA
107898563 TAATGAGTAT
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
52 53 0.80
53 8 0.12
54 5 0.08
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (52 bp):
TTATAGAAAATCAAAAGGTTACTCTCTCTTCTCATTTGCTATTTTGTCCAAA
Found at i:107902912 original size:11 final size:11
Alignment explanation
Indices: 107902897--107902936 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
107902887 GTTTTCTCCA
107902897 TATTTTGCTAT
1 TATTTTGCTAT
* *
107902908 CATTTTACTAT
1 TATTTTGCTAT
*
107902919 TATATTGCTAT
1 TATTTTGCTAT
107902930 TATTTTG
1 TATTTTG
107902937 TTGTTATTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.10, G:0.07, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:107903829 original size:60 final size:62
Alignment explanation
Indices: 107903758--107903874 Score: 177
Period size: 61 Copynumber: 1.9 Consensus size: 62
107903748 AGACATGCAA
107903758 TATACTTTT-AAATAAAATAATTTCCTAGTCTTAC-TTTTCTCCAATTAAATAAGACAGATTT
1 TATACTTTTAAAATAAAATAATTTCCTAGTCTTACTTTTTC-CCAATTAAATAAGACAGATTT
* * *
107903819 TATA-TTTTAAAATAAATTATTTTCCTAGTCTTCCTTTTTCCCAATTAAATAAGACA
1 TATACTTTTAAAATAAAATAATTTCCTAGTCTTACTTTTTCCCAATTAAATAAGACA
107903875 TGCTATCATA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
60 4 0.08
61 42 0.82
62 5 0.10
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (62 bp):
TATACTTTTAAAATAAAATAATTTCCTAGTCTTACTTTTTCCCAATTAAATAAGACAGATTT
Found at i:107904325 original size:46 final size:46
Alignment explanation
Indices: 107904272--107904369 Score: 178
Period size: 46 Copynumber: 2.1 Consensus size: 46
107904262 ATACAGAGAA
*
107904272 TAAAATTGACTAATTCAAAAAGAATAGGATTTAAAATTGATCTAAT
1 TAAAATTGACTAATTCAAAAAGAATAGGAATTAAAATTGATCTAAT
*
107904318 TAAAATTGACTAATTCAAAAAGAATAGGAATTAAAATTGATTTAAT
1 TAAAATTGACTAATTCAAAAAGAATAGGAATTAAAATTGATCTAAT
107904364 TAAAAT
1 TAAAAT
107904370 ACAGGGACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (46 bp):
TAAAATTGACTAATTCAAAAAGAATAGGAATTAAAATTGATCTAAT
Found at i:107904332 original size:14 final size:15
Alignment explanation
Indices: 107904302--107904369 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
107904292 AGAATAGGAT
107904302 TTAAAATTGATCTAA
1 TTAAAATTGATCTAA
107904317 TTAAAATTGA-CTAA
1 TTAAAATTGATCTAA
* **
107904331 TTCAAAA-AGAATAGGAA
1 TT-AAAATTG-AT-CTAA
*
107904348 TTAAAATTGATTTAA
1 TTAAAATTGATCTAA
107904363 TTAAAAT
1 TTAAAAT
107904370 ACAGGGACTA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
14 7 0.17
15 24 0.57
16 6 0.14
17 5 0.12
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.35
Consensus pattern (15 bp):
TTAAAATTGATCTAA
Found at i:107913734 original size:17 final size:17
Alignment explanation
Indices: 107913714--107913747 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
107913704 AGGTTTAGGT
107913714 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
107913731 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
107913748 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:107917582 original size:21 final size:21
Alignment explanation
Indices: 107917558--107917601 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
107917548 CTAAATCTTC
*
107917558 AATGCTGAGGTGAAATGGTGA
1 AATGCTGAAGTGAAATGGTGA
107917579 AATGCTGAAGTGAAATGGTGA
1 AATGCTGAAGTGAAATGGTGA
107917600 AA
1 AA
107917602 CTCTTGGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.34, T:0.23
Consensus pattern (21 bp):
AATGCTGAAGTGAAATGGTGA
Done.