Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 343 of 356
Found at i:109816018 original size:15 final size:16
Alignment explanation
Indices: 109815998--109816029 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
109815988 TTAAAATATA
109815998 TAATAAAA-ATAAAAT
1 TAATAAAACATAAAAT
109816013 TAATAAAACATAAAAT
1 TAATAAAACATAAAAT
109816029 T
1 T
109816030 TTATCATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (16 bp):
TAATAAAACATAAAAT
Found at i:109816834 original size:15 final size:17
Alignment explanation
Indices: 109816803--109816835 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
109816793 CATTCGAATG
109816803 AAATAAGATGAAAGAAA
1 AAATAAGATGAAAGAAA
109816820 AAATAAGA-G-AAGAAA
1 AAATAAGATGAAAGAAA
109816835 A
1 A
109816836 TAAAATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (17 bp):
AAATAAGATGAAAGAAA
Found at i:109831009 original size:15 final size:15
Alignment explanation
Indices: 109830964--109831071 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
109830954 CCAATATCTC
109830964 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
109830979 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
109830994 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
109831009 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
109831024 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
109831039 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
109831054 GATACCCATATCTTT
1 GATACCCATATCTTT
109831069 GAT
1 GAT
109831072 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:109831078 original size:30 final size:30
Alignment explanation
Indices: 109830954--109831077 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
109830944 TTTTATTATG
*
109830954 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
109830985 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
109831015 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
109831045 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
109831075 CCA
1 CCA
109831078 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:109833342 original size:5 final size:5
Alignment explanation
Indices: 109833332--109833403 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
109833322 TGTTAAAAAA
* *
109833332 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
109833378 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
109833404 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:109833385 original size:19 final size:19
Alignment explanation
Indices: 109833361--109833403 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
109833351 ATTATGTTTT
109833361 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
109833380 TATATTATATTATATTATA
1 TATATTATATTATATTATA
109833399 TATAT
1 TATAT
109833404 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:109833436 original size:18 final size:19
Alignment explanation
Indices: 109833408--109833447 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
109833398 ATATATACAT
*
109833408 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
109833427 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
109833445 AAA
1 AAA
109833448 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:109834088 original size:44 final size:45
Alignment explanation
Indices: 109833993--109834126 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
109833983 ACAGGACAGA
* *
109833993 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
109834039 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
109834083 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
109834127 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:109838146 original size:15 final size:15
Alignment explanation
Indices: 109838101--109838208 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
109838091 CTAATATCTC
109838101 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
109838116 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
109838131 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
109838146 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
*
109838161 GATACTCATATCTTT
1 GATACCCATATCTTT
** *
109838176 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
109838191 GATACCCATATCTTT
1 GATACCCATATCTTT
109838206 GAT
1 GAT
109838209 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:109838215 original size:30 final size:30
Alignment explanation
Indices: 109838101--109838214 Score: 201
Period size: 30 Copynumber: 3.8 Consensus size: 30
109838091 CTAATATCTC
109838101 GATACCCATATCTTTGACTTTCCAATATTT
1 GATACCCATATCTTTGACTTTCCAATATTT
109838131 GATACCCATATCTTTGACTTTCCAATATTT
1 GATACCCATATCTTTGACTTTCCAATATTT
* *
109838161 GATACTCATATCTTTGACTTTCCATTATTT
1 GATACCCATATCTTTGACTTTCCAATATTT
*
109838191 GATACCCATATCTTTGATTTTCCA
1 GATACCCATATCTTTGACTTTCCA
109838215 TAAATATGGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (30 bp):
GATACCCATATCTTTGACTTTCCAATATTT
Found at i:109844950 original size:20 final size:20
Alignment explanation
Indices: 109844912--109844951 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
109844902 TCAATCATAT
* *
109844912 AAAAAATTTGAATTATATGA
1 AAAAAATTTAAATGATATGA
*
109844932 AAAAAATTTAAATGGTATGA
1 AAAAAATTTAAATGATATGA
109844952 GAAACTGTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (20 bp):
AAAAAATTTAAATGATATGA
Found at i:109851330 original size:12 final size:11
Alignment explanation
Indices: 109851294--109851335 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 11
109851284 TTTTCTTCTA
109851294 TTTTAATAATT
1 TTTTAATAATT
*
109851305 TTAT-A-AATT
1 TTTTAATAATT
109851314 TTTTAATAATT
1 TTTTAATAATT
109851325 TATTTAATAAT
1 T-TTTAATAAT
109851336 CTTGCCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 7 0.27
10 2 0.08
11 8 0.31
12 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAATAATT
Found at i:109859159 original size:300 final size:299
Alignment explanation
Indices: 109858597--109859149 Score: 716
Period size: 300 Copynumber: 1.9 Consensus size: 299
109858587 TATTATTAAT
* * * *
109858597 ATATACAACTGATGGAGGTAAAAAAGTATACATAATAAAATTAAAAGGTATAAAAATATCAAAAT
1 ATATACAACTAATGCAGATAAAAAAGTATACACAATAAAATTAAAAGGTATAAAAATATCAAAAT
* * * *
109858662 AAAATTTTAGTAGAATGGTAAATTAAAGGGTTTATTAATGCAATTGGTGTCAGTTTGAATCCCAC
66 AAAACTTTAGTAGAATGGTAAATTAAAGGGTTTATTAATACAATTGATGTCAGTGTGAATCCCAC
* * * * * * *
109858727 TATGTGTATATTTTTATTTATTTGTTTTAAAGTGAAAAGACTAAAATACTCTTAAATAATATTAC
131 CATATG-ATATTTTTATTGATTTGTTTTAAAATGAAAAAACTAAAATACCCTCAAATAATATTAC
* * ** * * * *
109858792 TTATTTTAATTACGGAAGGGTATTATTGTAATTTTTCAACCAAGTTGGTGACCTAGTTGAGAGTG
195 TTATTTTAATTACGAAAGGGCATTATCATAATTTTTCAACCAAATCGGGGACCGAGTTGAGAGTG
109858857 ACACGAACTCAGTTAAGAGTTTAAATAATAGTAAGTATAG
260 ACACGAACTCAGTTAAGAGTTTAAATAATAGTAAGTATAG
* * * * *
109858897 ATATACAACTAATGCAGATAATAAAGTGTGCACAATAAAATTAAAATGTGTAAAAATATCAAAAT
1 ATATACAACTAATGCAGATAAAAAAGTATACACAATAAAATTAAAAGGTATAAAAATATCAAAAT
* ** **
109858962 AAAACTTTAGTAGAATGGTAAATTAAAGGTTTTATTAATACAATTGATGTGGGTGTGAATCTTAC
66 AAAACTTTAGTAGAATGGTAAATTAAAGGGTTTATTAATACAATTGATGTCAGTGTGAATCCCAC
* * *
109859027 CATATG-TA-TTTTATTGGTTTGTTTTAAAATGAAAAAACTAAAGTACCCTCAAATAATATTATT
131 CATATGATATTTTTATTGATTTGTTTTAAAATGAAAAAACTAAAATACCCTCAAATAATATTACT
* * *
109859090 TATTTTAATTATGAAAGGGCATTCTCATAATTTTTTAACCAAATCGGGGACTCGA-TTGAG
196 TATTTTAATTACGAAAGGGCATTATCATAATTTTTCAACCAAATCGGGGAC-CGAGTTGAG
109859150 GGCAGTGACA
Statistics
Matches: 213, Mismatches: 39, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
297 93 0.44
298 4 0.02
300 116 0.54
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.35
Consensus pattern (299 bp):
ATATACAACTAATGCAGATAAAAAAGTATACACAATAAAATTAAAAGGTATAAAAATATCAAAAT
AAAACTTTAGTAGAATGGTAAATTAAAGGGTTTATTAATACAATTGATGTCAGTGTGAATCCCAC
CATATGATATTTTTATTGATTTGTTTTAAAATGAAAAAACTAAAATACCCTCAAATAATATTACT
TATTTTAATTACGAAAGGGCATTATCATAATTTTTCAACCAAATCGGGGACCGAGTTGAGAGTGA
CACGAACTCAGTTAAGAGTTTAAATAATAGTAAGTATAG
Found at i:109868434 original size:2 final size:2
Alignment explanation
Indices: 109868400--109868426 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
109868390 AAGAAAAAAA
109868400 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
109868427 TGGAGAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:109869631 original size:5 final size:6
Alignment explanation
Indices: 109869617--109869656 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
109869607 AAATTATATG
*
109869617 TTTTAT TTTTAT TTTTAT TTTTAGAA TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTT--AT TTTTAT TTTTAT TT
109869657 ATTAAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 25 0.83
8 5 0.17
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:109869697 original size:13 final size:13
Alignment explanation
Indices: 109869681--109869705 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109869671 AATTTTTATG
109869681 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
109869694 ATTGGGTTGGGT
1 ATTGGGTTGGGT
109869706 TAGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:109869705 original size:18 final size:18
Alignment explanation
Indices: 109869682--109869719 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
109869672 ATTTTTATGA
*
109869682 TTGGGTTGGGTAATTGGG
1 TTGGGTTAGGTAATTGGG
*
109869700 TTGGGTTAGGTACTTGGG
1 TTGGGTTAGGTAATTGGG
109869718 TT
1 TT
109869720 AATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.45, T:0.42
Consensus pattern (18 bp):
TTGGGTTAGGTAATTGGG
Found at i:109870721 original size:14 final size:14
Alignment explanation
Indices: 109870702--109870729 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
109870692 AAAAAATTAG
109870702 TTAAGCTTTTTGAC
1 TTAAGCTTTTTGAC
109870716 TTAAGCTTTTTGAC
1 TTAAGCTTTTTGAC
109870730 ATGGATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TTAAGCTTTTTGAC
Found at i:109871195 original size:10 final size:10
Alignment explanation
Indices: 109871169--109871207 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
109871159 AACATATTGT
*
109871169 AAAATAGTAGC
1 AAAATAGTA-A
109871180 AAAATAGTAA
1 AAAATAGTAA
*
109871190 AAAATAATAA
1 AAAATAGTAA
109871200 AAAATAGT
1 AAAATAGT
109871208 TTTCTTTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (10 bp):
AAAATAGTAA
Found at i:109876381 original size:13 final size:13
Alignment explanation
Indices: 109876363--109876388 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109876353 CTTAAAAACC
109876363 TTTTAATTTTAAA
1 TTTTAATTTTAAA
109876376 TTTTAATTTTAAA
1 TTTTAATTTTAAA
109876389 AAAGATCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTAATTTTAAA
Found at i:109877323 original size:24 final size:23
Alignment explanation
Indices: 109877261--109877330 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 23
109877251 GAATCTCAAC
*
109877261 TTTAAAAATT-AAATTAAAAAAA
1 TTTAAAAATTAAAATAAAAAAAA
**
109877283 TTATCAATTATTAAAAATAAAAAAGAA
1 TT-T-AAAAATT-AAAATAAAAAA-AA
109877310 TTTAAAAATTAAAATAAAAAA
1 TTTAAAAATTAAAATAAAAAA
109877331 TTTAAATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
22 2 0.05
23 1 0.03
24 16 0.42
25 5 0.13
26 10 0.26
27 4 0.11
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (23 bp):
TTTAAAAATTAAAATAAAAAAAA
Found at i:109888478 original size:6 final size:6
Alignment explanation
Indices: 109888467--109888491 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
109888457 TAGCAAAGAA
109888467 TTCACT TTCACT TTCACT TTCACT T
1 TTCACT TTCACT TTCACT TTCACT T
109888492 CTTTCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCACT
Found at i:109893569 original size:25 final size:24
Alignment explanation
Indices: 109893541--109893614 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 24
109893531 CAAAATTAAC
109893541 TTAAATAATATATATTTAATTAATA
1 TTAAATAATATATATTTAA-TAATA
* * *
109893566 TTAAATATTATAATTTTTAATATTA
1 TTAAATAATAT-ATATTTAATAATA
109893591 TTAAAT-ATATATATTTAATAATA
1 TTAAATAATATATATTTAATAATA
109893614 T
1 T
109893615 AATAATTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
23 12 0.29
24 3 0.07
25 20 0.48
26 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAAATAATATATATTTAATAATA
Found at i:109893639 original size:13 final size:13
Alignment explanation
Indices: 109893621--109893645 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109893611 ATATAATAAT
109893621 TTATTAATTTAAA
1 TTATTAATTTAAA
109893634 TTATTAATTTAA
1 TTATTAATTTAA
109893646 TAAAGTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTTAAA
Found at i:109893639 original size:49 final size:50
Alignment explanation
Indices: 109893541--109893648 Score: 125
Period size: 49 Copynumber: 2.2 Consensus size: 50
109893531 CAAAATTAAC
* *
109893541 TTAAATAATATATATTTAATTAATATTAAATATTATAATTTTTAATATTA
1 TTAAATAATATATATTTAATTAATATAAAATATTATAATTTTAAATATTA
109893591 TTAAAT-ATATATATTTAA-TAATATAATAAT-TTATTAA-TTTAAATTATTAA
1 TTAAATAATATATATTTAATTAATATAA-AATATTA-TAATTTTAAA-TATT-A
*
109893641 TTTAATAA
1 TTAAATAA
109893649 AGTATTTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
48 15 0.30
49 22 0.44
50 12 0.24
51 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (50 bp):
TTAAATAATATATATTTAATTAATATAAAATATTATAATTTTAAATATTA
Found at i:109893646 original size:29 final size:29
Alignment explanation
Indices: 109893609--109893678 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
109893599 ATATATTTAA
* *
109893609 TAATATAATAATTTA-TTAAT-TTAAATTAT
1 TAATTTAATAATGTATTTAATATT-AATT-T
*
109893638 TAATTTAATAAAGTATTTAATATTAATTT
1 TAATTTAATAATGTATTTAATATTAATTT
*
109893667 TATTTTAATAAT
1 TAATTTAATAAT
109893679 AAATTTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 23 0.68
30 9 0.26
31 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (29 bp):
TAATTTAATAATGTATTTAATATTAATTT
Found at i:109893673 original size:17 final size:18
Alignment explanation
Indices: 109893653--109893686 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
109893643 TAATAAAGTA
*
109893653 TTTAAT-ATTAATTTTAT
1 TTTAATAATAAATTTTAT
109893670 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
109893687 AAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:109898738 original size:22 final size:22
Alignment explanation
Indices: 109898704--109898767 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
109898694 TCAATATTTT
*
109898704 AATAAATCA-ATAAAAATTATCA
1 AATAAAT-ATATAAAAATTATAA
*
109898726 AATAAATATATAATAA-TATAA
1 AATAAATATATAAAAATTATAA
*
109898747 AATTACATTATATAAAAATTA
1 AA-TA-AATATATAAAAATTA
109898768 CATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 10 0.29
24 2 0.06
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATATATAAAAATTATAA
Found at i:109898761 original size:15 final size:16
Alignment explanation
Indices: 109898741--109898772 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
109898731 ATATATAATA
109898741 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
109898756 ATATAAAAATTACATT
1 ATATAAAAATTACATT
109898772 A
1 A
109898773 AAAAATCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:109899042 original size:107 final size:108
Alignment explanation
Indices: 109898890--109899369 Score: 765
Period size: 107 Copynumber: 4.4 Consensus size: 108
109898880 ACACTAATAC
*
109898890 ACACTAAACCACTAAACAGTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
109898953 AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCAC-AAT
66 AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAAAT
109898995 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
109899060 AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCAC-AAT
66 AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAAAT
109899102 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
*
109899167 AAAAATA-TTTTTTAAAATATATTACTAAAAAAATTACAATACACTAAT
66 AAAAATATTTTTTTAAAATATATTACT--AAAAA--A-AAT-CACAAAT
109899215 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
1 ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
*
109899280 AAAATTATTTTTTTAAAATATATTACT-AAAAAAATCACAATACAGT
66 AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCAC-A-A-A-T
*
109899326 AATGCACTAAACTACTAAACACTAACAATTTATATAACCTAATC
1 -A--CACTAAACCACTAAACACTAACAATTTATATAACCTAATC
109899370 AACTATAAAA
Statistics
Matches: 354, Mismatches: 4, Indels: 25
0.92 0.01 0.07
Matches are distributed among these distances:
105 24 0.07
106 19 0.05
107 155 0.44
108 8 0.02
109 2 0.01
110 2 0.01
111 8 0.02
112 4 0.01
113 74 0.21
114 58 0.16
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (108 bp):
ACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTAT
AAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAAAT
Found at i:109899252 original size:220 final size:213
Alignment explanation
Indices: 109898830--109899369 Score: 789
Period size: 220 Copynumber: 2.4 Consensus size: 213
109898820 ATACTAACAC
* *
109898830 AAAATAACTATAAAATTA-TTTTTT-AAATACATTACTAAAAAAATCACAATACACTAATACACA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAA-AC-CA
**
109898893 CTAAACCACTAAACAGTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAA
64 CTAAA-CACT-AAC---AA-TTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAA
109898958 TATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTT
123 TATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTT
109899023 ATATAACCTAATCTTAAATTACTAAT
188 ATATAACCTAATCTTAAATTACTAAT
*
109899049 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCAC
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAAACCAC
109899114 TAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATA-TTTT
65 TAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATATTTTT
109899178 TTAAAATATATTACTAAAAAAATTACAATACACTAATACACTAAACCACTAAACACTAACAATTT
130 TTAAAATATATTACT--AAAAA--A-AAT-CAC-AATACACTAAACCACTAAACACTAACAATTT
109899243 ATATAACCTAATCTTAAATTACTAAT
188 ATATAACCTAATCTTAAATTACTAAT
109899269 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACAGTAATGCACT
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCAC---A-A-T-A--CACT
*
109899334 AAACTACTAAACACTAACAATTTATATAACCTAATC
58 AAACCACTAAACACTAACAATTTATATAACCTAATC
109899370 AACTATAAAA
Statistics
Matches: 296, Mismatches: 7, Indels: 28
0.89 0.02 0.08
Matches are distributed among these distances:
213 19 0.06
214 45 0.15
215 7 0.02
217 1 0.00
218 6 0.02
219 34 0.11
220 107 0.36
221 13 0.04
222 22 0.07
223 1 0.00
224 1 0.00
225 1 0.00
227 39 0.13
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.31
Consensus pattern (213 bp):
AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAAACCACT
AAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATATTTTTT
TAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATATAACC
TAATCTTAAATTACTAAT
Found at i:109899380 original size:220 final size:220
Alignment explanation
Indices: 109898830--109899441 Score: 787
Period size: 220 Copynumber: 2.8 Consensus size: 220
109898820 ATACTAACAC
* *
109898830 AAAATAACTATAAAATTA-TTTTTT-AAATACATTACTAAAAAAATCACAATACACTAATACACA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACA-TAAT---CA
*
109898893 CTAAACCACTAAACAGTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAA
62 CTAAACCACTAAACACTAACAATTTATATAACCTAATC---AA-TACTAATAAAATAGCTATAAA
109898956 AATATTTTTTTAAAATATATTACT--AAAAA-A-AAT-CAC-AATACACTAAACCACTAAACACT
123 AATA-TTTTTTAAAATATATTACTAAAAAAATACAATACACTAATACACTAAACCACTAAACACT
109899015 AACAATTTATATAACCTAATCTTAAATTACTAAT
187 AACAATTTATATAACCTAATCTTAAATTACTAAT
*
109899049 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAAATCAC---A-AT-A-CACTA
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACT-AAAAAAATCACAATACATAATCACTA
109899108 AACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAAT
65 AACCACTAAACACTAACAATTTATATAACCTAATC---AA-TACTAATAAAATAGCTATAAAAAT
109899173 ATTTTTTAAAATATATTACTAAAAAAATTACAATACACTAATACACTAAACCACTAAACACTAAC
126 ATTTTTTAAAATATATTACTAAAAAAA-TACAATACACTAATACACTAAACCACTAAACACTAAC
109899238 AATTTATATAACCTAATCTTAAATTACTAAT
190 AATTTATATAACCTAATCTTAAATTACTAAT
109899269 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACAGTAATGCACT
1 AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACA-TAAT-CACT
*
109899334 AAACTACTAAACACTAACAATTTATATAACCTAATC-A-ACT-ATAAAAT---TAT-----T-TT
64 AAACCACTAAACACTAACAATTTATATAACCTAATCAATACTAATAAAATAGCTATAAAAATATT
*
109899387 TTTTAAATATATTATTACTAAAAAAATCACAATATACTAATACACTAAA-CACTAA
129 TTTTAAA-ATA-TATTACTAAAAAAAT-ACAATACACTAATACACTAAACCACTAA
109899442 CAATTTGTAA
Statistics
Matches: 363, Mismatches: 7, Indels: 53
0.86 0.02 0.13
Matches are distributed among these distances:
211 9 0.02
212 34 0.09
213 53 0.15
214 45 0.12
215 5 0.01
216 1 0.00
217 5 0.01
218 4 0.01
219 31 0.09
220 107 0.29
221 14 0.04
222 12 0.03
223 2 0.01
224 1 0.00
225 1 0.00
227 39 0.11
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.32
Consensus pattern (220 bp):
AAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAAAAAATCACAATACATAATCACTAA
ACCACTAAACACTAACAATTTATATAACCTAATCAATACTAATAAAATAGCTATAAAAATATTTT
TTAAAATATATTACTAAAAAAATACAATACACTAATACACTAAACCACTAAACACTAACAATTTA
TATAACCTAATCTTAAATTACTAAT
Found at i:109899380 original size:327 final size:312
Alignment explanation
Indices: 109898830--109899447 Score: 856
Period size: 327 Copynumber: 1.9 Consensus size: 312
109898820 ATACTAACAC
*
109898830 AAAATAACTATAAAATTATTTTTTAAATACATTACTAAAAAAATCACAATACACTAATACACACT
1 AAAATAACTATAAAAATATTTTTTAAATACATTACTAAAAAAATCACAATACACTAATA-ACACT
*
109898895 AAACCACTAAACAGTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATA
65 AAACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATA
109898960 TTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTTAT
130 TTTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTTAT
109899025 ATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATATTTTTTTAAA-ATA-TATTACTA
195 ATAACCTAATC---AA-TACTAAT-AAA-A--T-T----AT-TTTTTTTAAATATATTATTACT-
109899088 AAAAAAATCACAATACACTAA-ACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTAC
245 AAAAAAATCACAATACACTAATA-CACTAAACACTAACAATTTATATAACCTAATCTTAAATTAC
109899152 TAAT
309 TAAT
* * *
109899156 AAAATAGCTATAAAAATATTTTTTAAAATATATTACTAAAAAAATTACAATACACTAAT-ACACT
1 AAAATAACTATAAAAATATTTTTT-AAATACATTACTAAAAAAATCACAATACACTAATAACACT
*
109899220 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAT
65 AAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAA
*
109899285 TATTTTTTTAAAATATATTACT-AAAAAAATCACAATACAGTAATGCACTAAACTACTAAACACT
128 TATTTTTTTAAAATATATTACTAAAAAAAATCAC---A-A-T-A--CACTAAACCACTAAACACT
109899349 AACAATTTATATAACCTAATC-A-ACT-ATAAAATTATTTTTTTTAAATATATTATTACTAAAAA
185 AACAATTTATATAACCTAATCAATACTAATAAAATTATTTTTTTTAAATATATTATTACTAAAAA
*
109899411 AATCACAATATACTAATACACTAAACACTAACAATTT
250 AATCACAATACACTAATACACTAAACACTAACAATTT
109899448 GTAACCTAAT
Statistics
Matches: 270, Mismatches: 8, Indels: 36
0.86 0.03 0.11
Matches are distributed among these distances:
317 10 0.04
318 44 0.16
319 8 0.03
322 1 0.00
323 1 0.00
325 25 0.09
326 36 0.13
327 98 0.36
328 3 0.01
329 1 0.00
330 2 0.01
331 1 0.00
332 1 0.00
334 39 0.14
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.32
Consensus pattern (312 bp):
AAAATAACTATAAAAATATTTTTTAAATACATTACTAAAAAAATCACAATACACTAATAACACTA
AACCACTAAACACTAACAATATATAACCTAATCTTAAATTACTAATAAAATAGCTATAAAAATAT
TTTTTTAAAATATATTACTAAAAAAAATCACAATACACTAAACCACTAAACACTAACAATTTATA
TAACCTAATCAATACTAATAAAATTATTTTTTTTAAATATATTATTACTAAAAAAATCACAATAC
ACTAATACACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:109899836 original size:24 final size:24
Alignment explanation
Indices: 109899809--109899854 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
109899799 GCAAAAGCAA
*
109899809 CGGCAGCAGCAGCAGTAGGTGGAG
1 CGGCAACAGCAGCAGTAGGTGGAG
*
109899833 CGGCAATAGCAGCAGTAGGTGG
1 CGGCAACAGCAGCAGTAGGTGG
109899855 GGGTGTCGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.20, G:0.43, T:0.11
Consensus pattern (24 bp):
CGGCAACAGCAGCAGTAGGTGGAG
Found at i:109900569 original size:21 final size:21
Alignment explanation
Indices: 109900543--109900610 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
109900533 ATAAACATAT
109900543 AATAATAGTATATTAAATAAA
1 AATAATAGTATATTAAATAAA
** *
109900564 AATAATTTTAT-TTAAAAAAA
1 AATAATAGTATATTAAATAAA
*
109900584 AAT-ATAGGTAAACTTAAATAAA
1 AATAATA-GTATA-TTAAATAAA
*
109900606 TATAA
1 AATAA
109900611 ATTAACCGGT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.37
21 9 0.26
22 10 0.29
23 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (21 bp):
AATAATAGTATATTAAATAAA
Found at i:109902520 original size:16 final size:17
Alignment explanation
Indices: 109902480--109902521 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
109902470 TTATAAACTC
109902480 CTTATTCTAAGTCTTTTT
1 CTTATT-TAAGTCTTTTT
109902498 CTT-TTTAAGTCTTTTT
1 CTTATTTAAGTCTTTTT
109902514 -TTATTTAA
1 CTTATTTAA
109902522 AAAATATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 2 0.09
16 16 0.70
17 2 0.09
18 3 0.13
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.64
Consensus pattern (17 bp):
CTTATTTAAGTCTTTTT
Found at i:109902763 original size:31 final size:31
Alignment explanation
Indices: 109902718--109902782 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
109902708 TAGTAAAAAT
* *
109902718 AAAATTATATTTTAATCTTTCAAAAAATGATA
1 AAAATTATAATTTAACCTTT-AAAAAATGATA
* *
109902750 AAAATT-TAATTTAACCTTTTAAAAATTATA
1 AAAATTATAATTTAACCTTTAAAAAATGATA
109902780 AAA
1 AAA
109902783 TAATTATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 12 0.41
31 11 0.38
32 6 0.21
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (31 bp):
AAAATTATAATTTAACCTTTAAAAAATGATA
Found at i:109907160 original size:26 final size:27
Alignment explanation
Indices: 109907115--109907173 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
109907105 TGTTTTCCAT
109907115 ATAG-TCGATTTCCTTAAAAAAAGGGC
1 ATAGTTCGATTTCCTTAAAAAAAGGGC
109907141 ATAGTTCGATTTCCTTAAAAAAAGGGC
1 ATAGTTCGATTTCCTTAAAAAAAGGGC
109907168 ATAGTT
1 ATAGTT
109907174 TGACTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (27 bp):
ATAGTTCGATTTCCTTAAAAAAAGGGC
Found at i:109913097 original size:9 final size:9
Alignment explanation
Indices: 109913083--109913143 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
109913073 ATTATTTTAG
109913083 AAAATTTTT
1 AAAATTTTT
109913092 AAAA-TTTT
1 AAAATTTTT
*
109913100 AAATTTTTT
1 AAAATTTTT
109913109 AATATATATTTT
1 AA-A-AT-TTTT
*
109913121 AGAATTTTT
1 AAAATTTTT
*
109913130 ATAATTTTTT
1 A-AAATTTTT
109913140 AAAA
1 AAAA
109913144 ATATAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
8 7 0.17
9 17 0.41
10 10 0.24
11 2 0.05
12 5 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
AAAATTTTT
Found at i:109913212 original size:19 final size:20
Alignment explanation
Indices: 109913162--109913205 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
109913152 TTTGAATTTG
109913162 TTTTTGAAAATTATTTTGAA
1 TTTTTGAAAATTATTTTGAA
109913182 TTTTTGAAAATTATTTT-AA
1 TTTTTGAAAATTATTTTGAA
109913201 TTTTT
1 TTTTT
109913206 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTTGAAAATTATTTTGAA
Found at i:109914602 original size:25 final size:24
Alignment explanation
Indices: 109914569--109914618 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
109914559 AATTAATCCA
109914569 AATACAAATAGAAATAGGATTATTG
1 AATACAAATAGAAATAGGATT-TTG
*
109914594 AATATAAATAGAAATAGGATTTTG
1 AATACAAATAGAAATAGGATTTTG
109914618 A
1 A
109914619 TTAATCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.52, C:0.02, G:0.16, T:0.30
Consensus pattern (24 bp):
AATACAAATAGAAATAGGATTTTG
Found at i:109914629 original size:6 final size:6
Alignment explanation
Indices: 109914620--109914667 Score: 87
Period size: 6 Copynumber: 8.0 Consensus size: 6
109914610 GGATTTTGAT
*
109914620 TAATCC TAATCC TAATCC TAATCC TAATCC TAATCC TAATTC TAATCC
1 TAATCC TAATCC TAATCC TAATCC TAATCC TAATCC TAATCC TAATCC
109914668 AACTCCATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (6 bp):
TAATCC
Found at i:109917953 original size:67 final size:68
Alignment explanation
Indices: 109917823--109917960 Score: 217
Period size: 67 Copynumber: 2.0 Consensus size: 68
109917813 TCAAATTAAA
* *
109917823 CCACATGCTCCACCACTTGTGCGGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTGCAGATGTAC
1 CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACAGATGTAC
109917888 TCC
66 TCC
* *
109917891 CCACATGCTCCACTACTTGTGCAGCCCC-TGTCAATTCCTTTTAGTTTCATTCTTAC-GAATGTA
1 CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACAG-ATGTA
109917954 CTCC
65 CTCC
109917958 CCA
1 CCA
109917961 GGTTGGATAC
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
66 1 0.02
67 38 0.58
68 26 0.40
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.34
Consensus pattern (68 bp):
CCACATGCTCCACCACTTGTGCAGCCCCTTGTCAATTCCTTTAAGTTTCATTCTTACAGATGTAC
TCC
Found at i:109918167 original size:4 final size:4
Alignment explanation
Indices: 109918158--109918186 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
109918148 TGAAGAGGTT
109918158 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
109918187 GATTCTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:109921564 original size:44 final size:44
Alignment explanation
Indices: 109921501--109921589 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
109921491 ATTTTATGTC
109921501 ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
1 ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
109921545 ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
1 ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
109921589 A
1 A
109921590 ACACATAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.29
Consensus pattern (44 bp):
ATGAAACACTACATAATTAAAAATACTACATAAGTATTGAAATT
Found at i:109921627 original size:9 final size:9
Alignment explanation
Indices: 109921610--109921640 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
109921600 TTAATTATTA
109921610 AATTTGATT
1 AATTTGATT
*
109921619 AATTCGATT
1 AATTTGATT
109921628 AATTTGATT
1 AATTTGATT
109921637 AATT
1 AATT
109921641 ATCTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (9 bp):
AATTTGATT
Found at i:109923411 original size:21 final size:20
Alignment explanation
Indices: 109923383--109923421 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
109923373 TGTTGGGTTG
*
109923383 ATTGGTATGGAATTATGTGC
1 ATTGGTATGGAATGATGTGC
*
109923403 ATTGAGTATTGAATGATGT
1 ATTG-GTATGGAATGATGT
109923422 ACTTTGTGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.03, G:0.28, T:0.41
Consensus pattern (20 bp):
ATTGGTATGGAATGATGTGC
Found at i:109924970 original size:39 final size:39
Alignment explanation
Indices: 109924927--109925002 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
109924917 TATAGGTAAC
109924927 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
* * *
109924966 GAGTTTAACTGAGTTTCGAGTTTGGATCGAGGAACTG
1 GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTG
109925003 TTTAGCAGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.30
Consensus pattern (39 bp):
GAGTTTAACAGAGTTTCAAGTTCGGATCGAGGAACTGCT
Found at i:109932092 original size:16 final size:15
Alignment explanation
Indices: 109932055--109932102 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
109932045 CGCTTAACCT
*
109932055 ATTTTTAAATTTATA
1 ATTTTTATATTTATA
*
109932070 ATATTTTATATTATGTA
1 AT-TTTTATATT-TATA
109932087 ATTTTTATATATTATA
1 ATTTTTATAT-TTATA
109932103 TAATTTATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 2 0.07
16 19 0.70
17 6 0.22
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
ATTTTTATATTTATA
Found at i:109938122 original size:35 final size:35
Alignment explanation
Indices: 109938064--109938131 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
109938054 TTAAGCTTAA
*
109938064 AATTATATGTTACCATTTCACCATACATAAGTGGC
1 AATTATATGTTACCACTTCACCATACATAAGTGGC
* * *
109938099 AATTATATGTTGCCACTTGACCATATATAAGTG
1 AATTATATGTTACCACTTCACCATACATAAGTG
109938132 CACTTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (35 bp):
AATTATATGTTACCACTTCACCATACATAAGTGGC
Found at i:109944734 original size:22 final size:21
Alignment explanation
Indices: 109944691--109944734 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
109944681 TTTGTTGTTG
* *
109944691 TTTTTTATTGTTTTGCTGCTA
1 TTTTTTATTGTTTTACTACTA
*
109944712 TTTTCTTATTGTTTTATTACTA
1 TTTT-TTATTGTTTTACTACTA
109944734 T
1 T
109944735 GTTATTACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.68
Consensus pattern (21 bp):
TTTTTTATTGTTTTACTACTA
Found at i:109946363 original size:126 final size:126
Alignment explanation
Indices: 109946138--109946389 Score: 441
Period size: 126 Copynumber: 2.0 Consensus size: 126
109946128 ACTTTTACTA
*
109946138 AAAAATAGACAAATTAGTTAATGTACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
1 AAAAATAGACAAATTAGTTAATATACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
*
109946203 TTCATCTATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
66 TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
* * *
109946264 AAAAATAGACAAATTAGTTAATATATATTAGATTAAAAAGCAAATTGATTATTTCTATTTAAAAT
1 AAAAATAGACAAATTAGTTAATATACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
* *
109946329 TTCATCCATTTTTACAGTTAAAAACTAGTGTGGGTGACGAAATAACTAGACAACTACACGT
66 TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
109946390 GTACCTCATG
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (126 bp):
AAAAATAGACAAATTAGTTAATATACATTAGATTAAAAAGCAAATTGATCATTTCTATTAAAAAT
TTCATCCATTTTTACAGTTAAAAACTAGCGTGGGTGACAAAATAACTAGACAACTACACGT
Found at i:109955840 original size:42 final size:42
Alignment explanation
Indices: 109955791--109955877 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
109955781 ACCTGCACGA
*
109955791 TAAATAAATTATCACATGTGCATTGTTATATTAACTTGTTAT
1 TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
*
109955833 TAAATAAATTATCACATGTGCATTGTCATATTTACTTGTTAT
1 TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
109955875 TAA
1 TAA
109955878 TAGAAAAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (42 bp):
TAAATAAATTATCACATGTGCATTGTCATATTAACTTGTTAT
Found at i:109960506 original size:22 final size:22
Alignment explanation
Indices: 109960463--109960531 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
109960453 TATGCACTAT
* * * *
109960463 TAAACAAAGAGCACTAAAGTGC
1 TAAACAGAGAACACGAATGTGC
*
109960485 TATACAGAGAACACGAATGTGC
1 TAAACAGAGAACACGAATGTGC
* *
109960507 TAAACAGAGAGCACTAATGTGC
1 TAAACAGAGAACACGAATGTGC
109960529 TAA
1 TAA
109960532 TAATCGGAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (22 bp):
TAAACAGAGAACACGAATGTGC
Found at i:109967265 original size:34 final size:34
Alignment explanation
Indices: 109967219--109967330 Score: 152
Period size: 34 Copynumber: 3.3 Consensus size: 34
109967209 CATAGGCCTC
* *
109967219 ACTGATATTGTTACTGAAATGGGCTCAGGCCCAG
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
* *
109967253 ACTGATACTGTTACTAAAATAGGCTCAGGCCCAA
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
* * *
109967287 ACTGCTACTGTTACTGAAATGGGCTAAGGCCCTA
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
*
109967321 ACTGAAACTG
1 ACTGATACTG
109967331 AAAGGGCTTA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (34 bp):
ACTGATACTGTTACTGAAATGGGCTCAGGCCCAA
Found at i:109970154 original size:30 final size:30
Alignment explanation
Indices: 109970102--109970160 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
109970092 TGTAATAGAT
109970102 TTTAAAAAAAATAATGATGTATACAAATAAA
1 TTTAAAAAAAATAATGATGTATA-AAATAAA
* *
109970133 TTTAAAAGAAATTAT-ATGTATAAAATAA
1 TTTAAAAAAAATAATGATGTATAAAATAA
109970161 CATGGATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 6 0.23
30 7 0.27
31 13 0.50
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (30 bp):
TTTAAAAAAAATAATGATGTATAAAATAAA
Found at i:109977759 original size:36 final size:37
Alignment explanation
Indices: 109977692--109977770 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 37
109977682 ATTTTACATA
* *
109977692 TAAAAATAATTATAATATTTAATTTAAAATTATTTGTT
1 TAAAAATAATTATAATATTTAAATTAAAATTATTAG-T
* *
109977730 TAAAAATAATTA-GAT-TTTAAATTACAATTATTAGT
1 TAAAAATAATTATAATATTTAAATTAAAATTATTAGT
109977765 TAAAAA
1 TAAAAA
109977771 GAGTTGTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 7 0.19
36 16 0.43
37 2 0.05
38 12 0.32
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (37 bp):
TAAAAATAATTATAATATTTAAATTAAAATTATTAGT
Found at i:109979440 original size:24 final size:25
Alignment explanation
Indices: 109979413--109979468 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
109979403 CTTTTTTTAT
*
109979413 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
109979437 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
109979462 -AAATAAA
1 TAAATAAA
109979469 TATTAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:109979454 original size:25 final size:23
Alignment explanation
Indices: 109979425--109979489 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 23
109979415 AATAAAAAAC
*
109979425 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
109979450 TTTAAAACATAAAAATAAAT--A
1 TTTAAAACATAAAAATAAATACA
109979471 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAATAAATA
109979490 AATAATGGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
19 10 0.26
20 8 0.21
21 1 0.03
23 4 0.11
24 4 0.11
25 11 0.29
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:109979482 original size:19 final size:20
Alignment explanation
Indices: 109979451--109979489 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
109979441 TCAAATACAT
109979451 TTAAAACATAAAAATAAATA
1 TTAAAACATAAAAATAAATA
109979471 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAATAAATA
109979490 AATAATGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
TTAAAACATAAAAATAAATA
Found at i:109986182 original size:181 final size:181
Alignment explanation
Indices: 109985874--109986235 Score: 670
Period size: 181 Copynumber: 2.0 Consensus size: 181
109985864 CCAGCTAATC
109985874 GGGTTCAGAAAACAGACATCCCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
1 GGGTTCAGAAAACAGACATCCCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
* * *
109985939 ATATATATAGAGACTTAGTTACCCTCACTAAATTCTAGCTAAGGGTCGGAATACAAAGACGCATT
66 ATAGATATAGAGACTTAGTTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
109986004 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
131 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
*
109986055 GGGTTCAGAAAACAGACATCTCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
1 GGGTTCAGAAAACAGACATCCCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
*
109986120 ATAGATATAGAGACTTAGTTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACACAGACGCATT
66 ATAGATATAGAGACTTAGTTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
*
109986185 TTCAGATAAAAAACATACACAAACTAAAATTGGTGACTTAGGACCAAACAG
131 TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
109986236 CTGAATAGAA
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 175 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.20
Consensus pattern (181 bp):
GGGTTCAGAAAACAGACATCCCACCCACAACAGTCACGAATTACACATTAACAGAACACATAGCC
ATAGATATAGAGACTTAGTTACCCTCACTAAAGTCTAGCCAAGGGTCGGAATACAAAGACGCATT
TTCAGATAAAAAACATACACAAACTAAAAGTGGTGACTTAGGACCAAACAG
Found at i:109987019 original size:19 final size:18
Alignment explanation
Indices: 109986997--109987038 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
109986987 ATTTTCAAAG
109986997 GAAAAAGAAAAGAAACAG-A
1 GAAAAAG-AAAGAAA-AGAA
109987016 GAAAAAGAAAGAAAAGAA
1 GAAAAAGAAAGAAAAGAA
109987034 GAAAA
1 GAAAA
109987039 GGGAACTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.76, C:0.02, G:0.21, T:0.00
Consensus pattern (18 bp):
GAAAAAGAAAGAAAAGAA
Found at i:109988053 original size:299 final size:294
Alignment explanation
Indices: 109987346--109988322 Score: 1040
Period size: 300 Copynumber: 3.3 Consensus size: 294
109987336 GGGGTGTTAC
* * *
109987346 ATTAAATTTACCACTCAACCAAAGCCTTATTTTAATATATTTTATAC-TTTTGTATTTTAATAGG
1 ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTT-TATTTTAATATG
* * * * * * * * *
109987410 CACGAGTTGTTCTCTTCATTAGTTGTATAACTATACT-AT-TTATTAAGTATTTTGCTAAGTTGG
65 CACAAGTTATTATCTCCACTAGTTGTATATCTATATTAATATTATTAAGTGTTTTACTAAGTTGG
* * * * *
109987473 TGTCACCCTCAACTAGGTCACCAACTCGGTTAGGAAATTATAAAAATGTCCTTTCGTAATTAAAA
130 TGTCACCCTCATCGA-GTCACCAACTCGGTTAAGAAATTACAAAAATG-CCTTTTGTAATTAAAA
*
109987538 TAAGTTATACTGTTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATGCAT
193 TAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATGCAT
109987603 AT-GT-GAGATTTGAA-CTCACACAAATTGGATTAAAAA
258 ATAGTGGA-ATTTGAACCTCACACAAATTGGA-TAAAAA
* *
109987639 ACCTTAAATTTATCACTCAACCAAAA-TTTCATTTTAATATATTTTATACATTTTTATTTTAAAA
1 A--TTAAATTTACCACTCAACCAAAACTTT-ATTTTAATATATTTTATACATTTTTATTTTAATA
* * * * * *
109987703 TGCACAAATTACTATCTCCACTAGTTGTATATTTATACTTACTATTTATTAAGTGTTTTATTATG
63 TGCACAAGTTATTATCTCCACTAGTTGTATATCTATA-TTAATA-TTATTAAGTGTTTTACTAAG
* ** *
109987768 TTGGTGTCACCCTCGATCGAGTCACCAAATCAATTAAGAAATTACAAAAATGCATTTTGTAATTA
126 TTGGTGTCACCCTC-ATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATGCCTTTTGTAATTA
* * *
109987833 AAATAACTAATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAATAAATTAAAATATG
190 AAATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATG
* * * *
109987898 CACATAGTGGAATTTGAACCTACCCCAACTAAATTTG-TAAAAT
255 CATATAGTGGAATTTGAACCT--CAC-AC-AAATTGGATAAAAA
* * * *
109987941 ATTAAATTTACCACTTAACCAAAACTTTATTTTAATATATTTTATACAATTTTATTTTAATTTAC
1 ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTTTATTTTAATATGC
* *
109988006 ACAAGTTATTATCTCC-CATAGTTGTATATCTATAGTTAATATTATTAAGCGTTTTACTAAATTG
66 ACAAGTTATTATCTCCAC-TAGTTGTATATCTATA-TTAATATTATTAAGTGTTTTACTAAGTTG
* ** * * * * *
109988070 CTGTCACATTCAATTGGGTCACCAACTCGGTTAAAAAATTACAAAAATACCTTTTCATAATTAAA
129 GTGTCACCCTC-ATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATGCCTTTT-GTAATTAAA
* * * *
109988135 ATAAGTTATACTATTTAAGAGTATTTTAGTATTTTCTTTTTAACAAAAACAAATTAAAATATGCA
192 ATAAGTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATGCA
* *
109988200 TATAGTAGG-ATTTGAACC-CACACTAATTGAGTTAGCAAAA
257 TATAGT-GGAATTTGAACCTCACACAAATTG-GATA--AAAA
* ** * * * * * * *
109988240 CTTTACTTTTACCAATCAACCAAAGCTTCATTTTATTCTAATTTATACATTTTCATTTTTAATAT
1 -ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTTTA-TTTTAATAT
*
109988305 GCATAAGTTATTATCTCC
64 GCACAAGTTATTATCTCC
109988323 GTTACTTTTA
Statistics
Matches: 566, Mismatches: 92, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
293 1 0.00
294 2 0.00
295 80 0.14
296 8 0.01
297 5 0.01
298 76 0.13
299 132 0.23
300 217 0.38
301 29 0.05
302 8 0.01
303 2 0.00
304 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.40
Consensus pattern (294 bp):
ATTAAATTTACCACTCAACCAAAACTTTATTTTAATATATTTTATACATTTTTATTTTAATATGC
ACAAGTTATTATCTCCACTAGTTGTATATCTATATTAATATTATTAAGTGTTTTACTAAGTTGGT
GTCACCCTCATCGAGTCACCAACTCGGTTAAGAAATTACAAAAATGCCTTTTGTAATTAAAATAA
GTTATACTATTTGAGGGTATTTTAGTCTTTTCATTTTAACAAAAACAAATTAAAATATGCATATA
GTGGAATTTGAACCTCACACAAATTGGATAAAAA
Found at i:109997724 original size:31 final size:30
Alignment explanation
Indices: 109997670--109997732 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
109997660 ACCATTGAAC
109997670 CTAAATCTCGAAATTTAAAAAATAAAAAGA
1 CTAAATCTCGAAATTTAAAAAATAAAAAGA
* *
109997700 CTAAATTTC-AAATTTGAAAAAAATACAAAGA
1 CTAAATCTCGAAATTT--AAAAAATAAAAAGA
109997731 CT
1 CT
109997733 TATCTCATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 6 0.21
30 8 0.28
31 15 0.52
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.25
Consensus pattern (30 bp):
CTAAATCTCGAAATTTAAAAAATAAAAAGA
Found at i:109999239 original size:8 final size:8
Alignment explanation
Indices: 109999226--109999250 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
109999216 TATAAAAATT
109999226 TGTCAAGC
1 TGTCAAGC
109999234 TGTCAAGC
1 TGTCAAGC
109999242 TGTCAAGC
1 TGTCAAGC
109999250 T
1 T
109999251 TAAAACTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (8 bp):
TGTCAAGC
Found at i:110001918 original size:40 final size:39
Alignment explanation
Indices: 110001871--110001950 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
110001861 AATTATGGGA
* * *
110001871 TACTGAATATTGTTTTGAATACTGAATTGAACTGTGAAAT
1 TACTGAATAATG-TTAGAATACTGAATTGAACTGTAAAAT
* * *
110001911 TACTGAATAATGTTAGTATATTGCATTGAACTGTAAAAT
1 TACTGAATAATGTTAGAATACTGAATTGAACTGTAAAAT
110001950 T
1 T
110001951 TCTAATGAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 23 0.68
40 11 0.32
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (39 bp):
TACTGAATAATGTTAGAATACTGAATTGAACTGTAAAAT
Found at i:110002212 original size:45 final size:45
Alignment explanation
Indices: 110002162--110002267 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
110002152 CGACTACTGT
*
110002162 TACTGTTACCGTTACTGTTATC-GATTC-GACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTA-CAGATTCAG-CACTTTGTGTATCGAA
*
110002207 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTATTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTATCGAA
*
110002252 TACTGTTACTGTTACT
1 TACTGTTACCGTTACT
110002268 ACTACTGCTA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
44 1 0.02
45 54 0.96
46 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTATCGAA
Found at i:110004060 original size:9 final size:9
Alignment explanation
Indices: 110004046--110004090 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
110004036 AATGTTATTT
110004046 ATTATAAAA
1 ATTATAAAA
110004055 ATTATAAAA
1 ATTATAAAA
110004064 ATT-T-AAA
1 ATTATAAAA
110004071 ATT-TAAAA
1 ATTATAAAA
110004079 A-TATAATAA
1 ATTATAA-AA
110004088 ATT
1 ATT
110004091 CCCTAGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 8 0.25
8 8 0.25
9 15 0.47
10 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTATAAAA
Found at i:110004089 original size:17 final size:17
Alignment explanation
Indices: 110004048--110004090 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
110004038 TGTTATTTAT
110004048 TATAAAAATTATAAAAA
1 TATAAAAATTATAAAAA
*
110004065 T-TTAAAATT-TAAAAA
1 TATAAAAATTATAAAAA
110004080 TATAATAAATT
1 TATAA-AAATT
110004091 CCCTAGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 7 0.32
16 9 0.41
17 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAAAATTATAAAAA
Found at i:110005828 original size:5 final size:5
Alignment explanation
Indices: 110005815--110005844 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
110005805 TGGCTAAAGG
*
110005815 GAAAA GAAAG GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA
110005845 TTGATGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:110006016 original size:7 final size:7
Alignment explanation
Indices: 110006004--110006033 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
110005994 GTTCTGTCAC
110006004 AAACAAA
1 AAACAAA
110006011 AAACAAA
1 AAACAAA
110006018 AAA-AAA
1 AAACAAA
110006024 AAACAAA
1 AAACAAA
110006031 AAA
1 AAA
110006034 TTAATTGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (7 bp):
AAACAAA
Found at i:110006026 original size:13 final size:13
Alignment explanation
Indices: 110006008--110006033 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110005998 TGTCACAAAC
110006008 AAAAAACAAAAAA
1 AAAAAACAAAAAA
110006021 AAAAAACAAAAAA
1 AAAAAACAAAAAA
110006034 TTAATTGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAACAAAAAA
Found at i:110007240 original size:24 final size:23
Alignment explanation
Indices: 110007191--110007241 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
110007181 TAGTTCAATC
*
110007191 AAATAAATTATTAAAAATATAAA
1 AAATAAATTATTAAAAATAGAAA
* *
110007214 AAATAAAATTATTTAAAATAGAGA
1 AAAT-AAATTATTAAAAATAGAAA
110007238 AAAT
1 AAAT
110007242 TGATTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (23 bp):
AAATAAATTATTAAAAATAGAAA
Found at i:110007426 original size:13 final size:13
Alignment explanation
Indices: 110007408--110007433 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110007398 GGGCCACCCC
110007408 CAAAACCCAATAA
1 CAAAACCCAATAA
110007421 CAAAACCCAATAA
1 CAAAACCCAATAA
110007434 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:110008259 original size:11 final size:11
Alignment explanation
Indices: 110008243--110008275 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
110008233 ATTCCCCTCT
110008243 CTTCTCTCTTC
1 CTTCTCTCTTC
110008254 CTTCTCTCTTC
1 CTTCTCTCTTC
*
110008265 CCTCTCTCTTC
1 CTTCTCTCTTC
110008276 TTTTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (11 bp):
CTTCTCTCTTC
Found at i:110008764 original size:3 final size:3
Alignment explanation
Indices: 110008740--110008807 Score: 57
Period size: 3 Copynumber: 22.3 Consensus size: 3
110008730 AATATCCTTG
* * * *
110008740 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
110008788 TTA GTA TATA TTT TTA TTA T
1 TTA TTA T-TA TTA TTA TTA T
110008808 GTACGTGTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:110008817 original size:23 final size:23
Alignment explanation
Indices: 110008747--110008818 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
110008737 TTGTTATTTT
* *
110008747 TATATTATTAGTAT-TATTAGTA
1 TATATTATTATTATGTAGTAGTA
*
110008769 TTACTATTATTATTATGTATTAGTA
1 -TA-TATTATTATTATGTAGTAGTA
*
110008794 TATATTTTTATTATGTACGT-GTA
1 TATATTATTATTATGTA-GTAGTA
110008817 TA
1 TA
110008819 CATATATATA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
23 21 0.49
24 14 0.33
25 8 0.19
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.56
Consensus pattern (23 bp):
TATATTATTATTATGTAGTAGTA
Found at i:110013446 original size:25 final size:26
Alignment explanation
Indices: 110013399--110013465 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
110013389 AACAGTCATG
*
110013399 AAAAGAAAAAGAAAAGAAAAC-A-AAA
1 AAAACAAAAAGAAAA-AAAACAAGAAA
*
110013424 AAAACAAAAAGAAAAAAGGACAAGAAA
1 AAAACAAAAAGAAAAAA-AACAAGAAA
110013451 AAAACAAAAA-AAAAA
1 AAAACAAAAAGAAAAA
110013466 TCAAATGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.05
25 16 0.43
26 6 0.16
27 13 0.35
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (26 bp):
AAAACAAAAAGAAAAAAAACAAGAAA
Found at i:110015932 original size:88 final size:85
Alignment explanation
Indices: 110015721--110015975 Score: 287
Period size: 88 Copynumber: 2.9 Consensus size: 85
110015711 TCAATTTTTG
*
110015721 TTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACACGCCGAGGTATTTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACA--CCGAGGTATTTT
* * * *
110015786 CAATTAAGC-CTTTTGATTTCTGT
64 CAATT--TCTGTTTTCATTTATGT
* ** *
110015809 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTC
1 TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTC
*
110015874 CATTTCTGTTTTCATTATTATGT
65 AATTTCTGTTTTCA-T-TTATGT
* * *** *
110015897 TTTTGAAAGATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 TTTTCAAA-ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTC
110015962 AATTTCTGTTTTCA
65 AATTTCTGTTTTCA
110015976 AAATTCAACT
Statistics
Matches: 141, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
85 1 0.01
86 5 0.04
87 20 0.14
88 74 0.52
89 41 0.29
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (85 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACACCGAGGTATTTTCA
ATTTCTGTTTTCATTTATGT
Found at i:110016148 original size:73 final size:73
Alignment explanation
Indices: 110015908--110016335 Score: 522
Period size: 73 Copynumber: 5.8 Consensus size: 73
110015898 TTTGAAAGAT
** * * *
110015908 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
*
110015972 TTCAAAAT
66 TTCAAAAA
* * ** * ** *
110015980 TCAACTTATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTTTTGCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA-TTTCTGCT
110016045 TTTCAAAAA
65 TTTCAAAAA
*
110016054 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGCTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
110016119 TTCAAAAA
66 TTCAAAAA
* * *
110016127 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG-TCGAGGTATTTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT-GAGGTATTTTCAATTTCTGCT
110016191 TTTCAAAAA
65 TTTCAAAAA
* * * * *
110016200 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC-T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
110016264 TTCAAAAAAAA
66 TTC---AAAAA
* * * *
110016275 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTATTTT-AATTTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTATTTTCAATTTC
110016336 AACTCATATT
Statistics
Matches: 316, Mismatches: 31, Indels: 14
0.88 0.09 0.04
Matches are distributed among these distances:
72 57 0.18
73 146 0.46
74 57 0.18
75 38 0.12
76 5 0.02
77 13 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (73 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGCTT
TTCAAAAA
Found at i:110016194 original size:146 final size:146
Alignment explanation
Indices: 110015894--110016934 Score: 911
Period size: 146 Copynumber: 7.3 Consensus size: 146
110015884 TTCATTATTA
* * ** * *
110015894 TGTTTTTGAAAGATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
1 TGTTTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* * * ** * * *
110015959 TTCAATTTCTG-TTTTCAAAATTCAACTTATATTACGAGAAATGAGTTGAGCCTCAAGACACATT
65 TTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTC
*
110016023 GAGGTATTTTCAATTTTT
130 GAGGTATTTTCAA-TTTC
*
110016041 TGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* *
110016106 TCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTCG
66 TCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTCG
110016171 AGGTATTTTCAATTTC
131 AGGTATTTTCAATTTC
* * * *
110016187 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * *
110016252 TCAAATTCTAC-TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACA
66 TCAATTTCTGCTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACA
* *
110016316 C-ACTGTGGTATTTT-AA----
126 CGTC-GAGGTATTTTCAATTTC
* * * * *
110016332 -----TT------TCAACTCATATTGCGAGAGGTGAGTT-AGCCTCGGGGCACGCCGATGTATTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * ** * **
110016385 TTAGTTTATG-TTTT---AAATTGACTCATATTGCGAGAGGTGAGTT-A-----A-G-C-CTTTT
66 TCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTCG
110016437 A---ATTTT---TGTT-
131 AGGTATTTTCAAT-TTC
** *
110016447 T-TTCA----AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * *
110016507 TCAATTTTTGTTTTTC-AAAATCAAATCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG-CT
66 TCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTC-
*
110016570 GAGGTAATTTCAATTTC
130 GAGGTATTTTCAATTTC
* * ** *
110016587 TG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTAT
1 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
110016651 TTTCAATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
64 TTTCAATTTCTGCTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
110016716 GTTGAGGTATTTTCAATTCCTGTTC
127 GTCGAGGTATTTTCAA----T-TTC
*
110016741 AATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 ------TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * *
110016806 GTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGC
60 GTAATTTCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* *
110016871 ACGCCGAGGTATTTTCAAATTC
125 ACGTCGAGGTATTTTCAATTTC
** *
110016893 T-ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
110016935 ACCTTTTAAT
Statistics
Matches: 737, Mismatches: 91, Indels: 132
0.77 0.09 0.14
Matches are distributed among these distances:
113 5 0.01
116 1 0.00
117 1 0.00
121 27 0.04
122 26 0.04
123 4 0.01
125 25 0.03
126 2 0.00
127 27 0.04
131 1 0.00
132 1 0.00
133 33 0.04
134 28 0.04
137 4 0.01
139 2 0.00
140 5 0.01
145 8 0.01
146 198 0.27
147 96 0.13
148 38 0.05
149 57 0.08
150 12 0.02
152 3 0.00
153 1 0.00
154 3 0.00
157 55 0.07
158 1 0.00
159 67 0.09
160 2 0.00
161 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (146 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTCG
AGGTATTTTCAATTTC
Found at i:110016547 original size:72 final size:73
Alignment explanation
Indices: 110016437--110016934 Score: 608
Period size: 74 Copynumber: 6.6 Consensus size: 73
110016427 TAAGCCTTTT
* *
110016437 AATTTTTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
110016501 GTAATTTC
66 GTAATTTC
* * *
110016509 AATTTTTGTTTTTC-AAAATCAAATCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
110016573 GTAATTTC
66 GTAATTTC
* * **
110016581 AATTTCTG-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTG
1 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
110016645 AGGTATTTTC
64 AGGTAATTTC
* * *
110016655 AATTTCTGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
1 AATTTCTGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
110016720 AGGTATTTTCAATTCCTGTTC
64 AGG-----T-AA----T-TTC
* *
110016741 AATTTATGTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
110016806 GTAATTTC
66 GTAATTTC
* * *
110016814 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAG
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
110016879 GTATTTTC
66 GTAATTTC
* ** *
110016887 AAATTCT-ACTTTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
110016935 ACCTTTTAAT
Statistics
Matches: 379, Mismatches: 29, Indels: 34
0.86 0.07 0.08
Matches are distributed among these distances:
71 4 0.01
72 80 0.21
73 76 0.20
74 95 0.25
75 54 0.14
78 2 0.01
79 1 0.00
80 1 0.00
81 1 0.00
84 48 0.13
85 2 0.01
86 15 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (73 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTC
Found at i:110016901 original size:159 final size:159
Alignment explanation
Indices: 110016596--110016888 Score: 473
Period size: 159 Copynumber: 1.9 Consensus size: 159
110016586 CTGTTGTCAA
* * *
110016596 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
**
110016661 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
110016726 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
110016755 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** *
110016820 TGTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
110016883 TTTCAA
131 TTTCAA
110016889 ATTCTACTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
157 55 0.45
158 1 0.01
159 67 0.54
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:110017111 original size:75 final size:75
Alignment explanation
Indices: 110016965--110017111 Score: 163
Period size: 75 Copynumber: 2.0 Consensus size: 75
110016955 TCAAAATCAG
* * ** * *
110016965 CTCATACTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTTGTGTGTT
1 CTCATACTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAATAATCTGTGTGTG
**
110017030 TTAATTTCAA
66 CAAATTTCAA
* * *
110017040 CTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAA-AATCTGTTTG
1 CTCATACTGCGAGAGGTGAGTTGAGCCTCGGGGCAC--GCCGAGGTATTTTCAATAATCTGTGTG
110017104 -GCAAATTT
64 TGCAAATTT
110017112 TGTTTTCAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
75 38 0.64
76 6 0.10
77 15 0.25
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (75 bp):
CTCATACTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAATAATCTGTGTGTG
CAAATTTCAA
Found at i:110017908 original size:13 final size:13
Alignment explanation
Indices: 110017890--110017915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
110017880 GGGCCACCCC
110017890 CAAAACCCAATAA
1 CAAAACCCAATAA
110017903 CAAAACCCAATAA
1 CAAAACCCAATAA
110017916 ACCAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACCCAATAA
Found at i:110019210 original size:3 final size:3
Alignment explanation
Indices: 110019186--110019256 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
110019176 AATATCCTTG
* * ** *
110019186 TTA TTT TTA -TA TTA TTA GTA TTA TTA GCA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
110019233 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
110019257 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:110019253 original size:23 final size:22
Alignment explanation
Indices: 110019198--110019259 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
110019188 ATTTTTATAT
* *
110019198 TATTAGTATTATTA-GCATTAC
1 TATTATTATTATTATGTATTAC
*
110019219 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
110019241 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
110019260 CGTGTATACA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.37
22 8 0.23
23 14 0.40
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:110019266 original size:23 final size:23
Alignment explanation
Indices: 110019222--110019267 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
110019212 GCATTACTAT
*
110019222 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
110019245 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
110019268 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:110020741 original size:8 final size:7
Alignment explanation
Indices: 110020727--110020800 Score: 53
Period size: 7 Copynumber: 10.1 Consensus size: 7
110020717 AAGAAGAGAA
110020727 AAAAAAT
1 AAAAAAT
110020734 AGAAAAAT
1 A-AAAAAT
110020742 -AAAAAT
1 AAAAAAT
*
110020748 AAAAAGAG
1 AAAAA-AT
*
110020756 AAATAAT
1 AAAAAAT
*
110020763 ATAAAAT
1 AAAAAAT
110020770 AAAATAAT
1 AAAA-AAT
*
110020778 -TAAAAT
1 AAAAAAT
110020784 AAAATAATT
1 AAAA-AA-T
110020793 AAAAAAT
1 AAAAAAT
110020800 A
1 A
110020801 TTTTTTAAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
6 9 0.17
7 20 0.38
8 18 0.35
9 5 0.10
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (7 bp):
AAAAAAT
Found at i:110020751 original size:21 final size:23
Alignment explanation
Indices: 110020727--110020773 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 23
110020717 AAGAAGAGAA
*
110020727 AAAAAATAGAAA-AATA-AAAAT
1 AAAAAAGAGAAATAATATAAAAT
110020748 -AAAAAGAGAAATAATATAAAAT
1 AAAAAAGAGAAATAATATAAAAT
110020770 AAAA
1 AAAA
110020774 TAATTAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 10 0.45
21 4 0.18
22 5 0.23
23 3 0.14
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (23 bp):
AAAAAAGAGAAATAATATAAAAT
Found at i:110020763 original size:15 final size:14
Alignment explanation
Indices: 110020736--110020797 Score: 65
Period size: 15 Copynumber: 4.4 Consensus size: 14
110020726 AAAAAAATAG
110020736 AAAAAT-AAA-AAT
1 AAAAATAAAATAAT
*
110020748 AAAAAGAGAAATAAT
1 AAAAATA-AAATAAT
110020763 ATAAAATAAAATAAT
1 A-AAAATAAAATAAT
*
110020778 TAAAATAAAATAATT
1 AAAAATAAAATAA-T
110020793 AAAAA
1 AAAAA
110020798 ATATTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
12 5 0.12
14 15 0.37
15 16 0.39
16 5 0.12
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
AAAAATAAAATAAT
Found at i:110020783 original size:14 final size:14
Alignment explanation
Indices: 110020756--110020796 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
110020746 ATAAAAAGAG
110020756 AAATAATATAAAATA
1 AAATAAT-TAAAATA
110020771 AAATAATTAAAATA
1 AAATAATTAAAATA
110020785 AAATAATTAAAA
1 AAATAATTAAAA
110020797 AATATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 19 0.73
15 7 0.27
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATAATTAAAATA
Found at i:110021571 original size:129 final size:129
Alignment explanation
Indices: 110021383--110021626 Score: 479
Period size: 129 Copynumber: 1.9 Consensus size: 129
110021373 TTTTGGGTAC
110021383 CGAAATATATAACTTTTTCTAAATACAAGTATCACATTGAAAAAAAAAACCCCAAATACCTCGTT
1 CGAAATATATAACTTTTTCTAAATACAAGTATCACATTGAAAAAAAAAACCCCAAATACCTCGTT
*
110021448 TAAAAAAATGTCAAACTTAAGCATTAAGTGATGTATTAAGCCATTAATATCTTAAGCATATGTT
66 AAAAAAAATGTCAAACTTAAGCATTAAGTGATGTATTAAGCCATTAATATCTTAAGCATATGTT
110021512 CGAAATATATAACTTTTTCTAAATACAAGTATCACATTGAAAAAAAAAACCCCAAATACCTCGTT
1 CGAAATATATAACTTTTTCTAAATACAAGTATCACATTGAAAAAAAAAACCCCAAATACCTCGTT
110021577 AAAAAAAATGTCAAACTTAAGCATTAAGTGATGTATTAAGCCATTAATAT
66 AAAAAAAATGTCAAACTTAAGCATTAAGTGATGTATTAAGCCATTAATAT
110021627 ATTGATATTA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 114 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (129 bp):
CGAAATATATAACTTTTTCTAAATACAAGTATCACATTGAAAAAAAAAACCCCAAATACCTCGTT
AAAAAAAATGTCAAACTTAAGCATTAAGTGATGTATTAAGCCATTAATATCTTAAGCATATGTT
Found at i:110024570 original size:4 final size:4
Alignment explanation
Indices: 110024561--110024597 Score: 56
Period size: 4 Copynumber: 8.8 Consensus size: 4
110024551 CAAAAATGGG
110024561 AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AGAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT A-AAT AAA
110024598 GGCTGGGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 23 0.74
5 8 0.26
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:110032216 original size:6 final size:6
Alignment explanation
Indices: 110032207--110032232 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
110032197 GTGTATGTGT
110032207 ATGTAG ATGTAG ATGTAG ATGTAG AT
1 ATGTAG ATGTAG ATGTAG ATGTAG AT
110032233 AGCTGATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (6 bp):
ATGTAG
Found at i:110033883 original size:5 final size:5
Alignment explanation
Indices: 110033866--110033916 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
110033856 TTTCATTCTG
* * * *
110033866 ATCAT ATCTT ATCAT ATCAT AAT-GT ATTAT AACAT ATCAT ATCAT ATCAT
1 ATCAT ATCAT ATCAT ATCAT -ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT
110033916 A
1 A
110033917 ACATGTCCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
4 2 0.05
5 33 0.89
6 2 0.05
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (5 bp):
ATCAT
Found at i:110035865 original size:15 final size:16
Alignment explanation
Indices: 110035834--110035866 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
110035824 TACCCTGAAA
110035834 AATAGACATACTTATC
1 AATAGACATACTTATC
*
110035850 AATAGTCATA-TTATC
1 AATAGACATACTTATC
110035865 AA
1 AA
110035867 CATATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.33
Consensus pattern (16 bp):
AATAGACATACTTATC
Found at i:110045112 original size:19 final size:20
Alignment explanation
Indices: 110045074--110045113 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
110045064 AATACTATGC
*
110045074 ATATATATATTTAGGGTTTA
1 ATATATATATTTAGGATTTA
*
110045094 ATATATA-ATTTAGTATTTA
1 ATATATATATTTAGGATTTA
110045113 A
1 A
110045114 GTTTGTCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (20 bp):
ATATATATATTTAGGATTTA
Found at i:110046497 original size:16 final size:16
Alignment explanation
Indices: 110046468--110046519 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
110046458 CTTCTTAATT
*
110046468 TTTCACTTCTTTTTCC
1 TTTCATTTCTTTTTCC
*
110046484 TTTCATATTCTTTTTCA
1 TTTCAT-TTCTTTTTCC
*
110046501 TTTCATTTCTCTTTCC
1 TTTCATTTCTTTTTCC
110046517 TTT
1 TTT
110046520 GTTTTTTCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 16 0.52
17 15 0.48
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTCTTTTTCC
Found at i:110049603 original size:460 final size:460
Alignment explanation
Indices: 110048743--110049662 Score: 1840
Period size: 460 Copynumber: 2.0 Consensus size: 460
110048733 GACGTGTTGA
110048743 ATTCGTACTTTGGCCCATTTTTCTCTGTTTTTGGCCCGTTTATGGTTCTTTTCGCTCTCCTATTA
1 ATTCGTACTTTGGCCCATTTTTCTCTGTTTTTGGCCCGTTTATGGTTCTTTTCGCTCTCCTATTA
110048808 TCTCCTAAGTATAAAACATGAAATTAAAGCATTAGGAGCATCGAATCCACCAATTCTAATGGAAA
66 TCTCCTAAGTATAAAACATGAAATTAAAGCATTAGGAGCATCGAATCCACCAATTCTAATGGAAA
110048873 ATCATCCATAAAATGCGTTAAGCATGGGGTAAAAATATGTATAAATTACGGTTTATCAATATACC
131 ATCATCCATAAAATGCGTTAAGCATGGGGTAAAAATATGTATAAATTACGGTTTATCAATATACC
110048938 CCCTCTCTCACGGTCTCCAACCATTTAGGAACCATCCATTGACAATCATTTTGTCCCCCAGTAAA
196 CCCTCTCTCACGGTCTCCAACCATTTAGGAACCATCCATTGACAATCATTTTGTCCCCCAGTAAA
110049003 AGACTGGCTAGTCTAGATTAAACTGAACCATAATCAATTCTCAACCTTGTCCAATTTTGTTTCTA
261 AGACTGGCTAGTCTAGATTAAACTGAACCATAATCAATTCTCAACCTTGTCCAATTTTGTTTCTA
110049068 ACTTTTCCTGATTTTCCAAAAAAGGCCGCTAGCTTATGATATCTTTCAATTTAACCCCTAAATCA
326 ACTTTTCCTGATTTTCCAAAAAAGGCCGCTAGCTTATGATATCTTTCAATTTAACCCCTAAATCA
110049133 TCCTTAATTTATGGGTTTAAAGTAAACCGTGTGTGACAAAGCTTATAGCAAATTATTATATATTC
391 TCCTTAATTTATGGGTTTAAAGTAAACCGTGTGTGACAAAGCTTATAGCAAATTATTATATATTC
110049198 AATAC
456 AATAC
110049203 ATTCGTACTTTGGCCCATTTTTCTCTGTTTTTGGCCCGTTTATGGTTCTTTTCGCTCTCCTATTA
1 ATTCGTACTTTGGCCCATTTTTCTCTGTTTTTGGCCCGTTTATGGTTCTTTTCGCTCTCCTATTA
110049268 TCTCCTAAGTATAAAACATGAAATTAAAGCATTAGGAGCATCGAATCCACCAATTCTAATGGAAA
66 TCTCCTAAGTATAAAACATGAAATTAAAGCATTAGGAGCATCGAATCCACCAATTCTAATGGAAA
110049333 ATCATCCATAAAATGCGTTAAGCATGGGGTAAAAATATGTATAAATTACGGTTTATCAATATACC
131 ATCATCCATAAAATGCGTTAAGCATGGGGTAAAAATATGTATAAATTACGGTTTATCAATATACC
110049398 CCCTCTCTCACGGTCTCCAACCATTTAGGAACCATCCATTGACAATCATTTTGTCCCCCAGTAAA
196 CCCTCTCTCACGGTCTCCAACCATTTAGGAACCATCCATTGACAATCATTTTGTCCCCCAGTAAA
110049463 AGACTGGCTAGTCTAGATTAAACTGAACCATAATCAATTCTCAACCTTGTCCAATTTTGTTTCTA
261 AGACTGGCTAGTCTAGATTAAACTGAACCATAATCAATTCTCAACCTTGTCCAATTTTGTTTCTA
110049528 ACTTTTCCTGATTTTCCAAAAAAGGCCGCTAGCTTATGATATCTTTCAATTTAACCCCTAAATCA
326 ACTTTTCCTGATTTTCCAAAAAAGGCCGCTAGCTTATGATATCTTTCAATTTAACCCCTAAATCA
110049593 TCCTTAATTTATGGGTTTAAAGTAAACCGTGTGTGACAAAGCTTATAGCAAATTATTATATATTC
391 TCCTTAATTTATGGGTTTAAAGTAAACCGTGTGTGACAAAGCTTATAGCAAATTATTATATATTC
110049658 AATAC
456 AATAC
110049663 CTTCATACAT
Statistics
Matches: 460, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
460 460 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (460 bp):
ATTCGTACTTTGGCCCATTTTTCTCTGTTTTTGGCCCGTTTATGGTTCTTTTCGCTCTCCTATTA
TCTCCTAAGTATAAAACATGAAATTAAAGCATTAGGAGCATCGAATCCACCAATTCTAATGGAAA
ATCATCCATAAAATGCGTTAAGCATGGGGTAAAAATATGTATAAATTACGGTTTATCAATATACC
CCCTCTCTCACGGTCTCCAACCATTTAGGAACCATCCATTGACAATCATTTTGTCCCCCAGTAAA
AGACTGGCTAGTCTAGATTAAACTGAACCATAATCAATTCTCAACCTTGTCCAATTTTGTTTCTA
ACTTTTCCTGATTTTCCAAAAAAGGCCGCTAGCTTATGATATCTTTCAATTTAACCCCTAAATCA
TCCTTAATTTATGGGTTTAAAGTAAACCGTGTGTGACAAAGCTTATAGCAAATTATTATATATTC
AATAC
Found at i:110052722 original size:28 final size:28
Alignment explanation
Indices: 110052691--110052762 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
110052681 TTGATATTTT
*
110052691 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
110052719 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
110052747 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
110052763 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:110057951 original size:18 final size:19
Alignment explanation
Indices: 110057923--110057960 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
110057913 ATTCTTTTGA
*
110057923 AAATCATAAAAATATAAAT
1 AAATCATAAAAATAAAAAT
110057942 AAAT-ATAAAAATAAAAAT
1 AAATCATAAAAATAAAAAT
110057960 A
1 A
110057961 TATTTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATCATAAAAATAAAAAT
Found at i:110061248 original size:102 final size:105
Alignment explanation
Indices: 110061119--110061325 Score: 348
Period size: 102 Copynumber: 2.0 Consensus size: 105
110061109 TTCAAATTTG
*
110061119 TATAAAATATCAATCTCTTTTATATATATTGCATTTTATACAATTACAAATGTATTTTTTATT-C
1 TATAAAATATCAATCTCTTTTATATATATTGCATTTTATACAATTACAAATATATTTTTTATTCC
110061183 -C-TGATAGTTAAGTCTATTATAATATATATATATATATA
66 ACTTGATAGTTAAGTCTATTATAATATATATATATATATA
*
110061221 TATAAAATATTAATCTCTTTTATATATATTGCATTTTATACAATTACAAATATATTTTTTATTCC
1 TATAAAATATCAATCTCTTTTATATATATTGCATTTTATACAATTACAAATATATTTTTTATT-C
110061286 CGAACTTGATAGTTAAGTCTATTATAATATATATATATAT
65 C--ACTTGATAGTTAAGTCTATTATAATATATATATATAT
110061326 TAGGTCTACT
Statistics
Matches: 97, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
102 61 0.63
104 1 0.01
107 1 0.01
108 34 0.35
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (105 bp):
TATAAAATATCAATCTCTTTTATATATATTGCATTTTATACAATTACAAATATATTTTTTATTCC
ACTTGATAGTTAAGTCTATTATAATATATATATATATATA
Found at i:110079409 original size:155 final size:156
Alignment explanation
Indices: 110079124--110079439 Score: 501
Period size: 155 Copynumber: 2.0 Consensus size: 156
110079114 TTTAACAGAC
110079124 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGGACAAGCAAAGATC
1 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATC-GGGGACAAGCAAAGATC
* *
110079189 TCTTGAGGTAGGAGTAGGGGCGACGTCACGAAGAGGAGAGTTATGACGTCGCAACGATATTTCAC
65 TCTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTTATGACGTCGCAACGATATCTCAC
110079254 CTAATGTAGCTGCGTTTTAGACTCCAA
130 CTAATGTAGCTGCGTTTTAGACTCCAA
* * * *
110079281 GCATGATGTCACGACGAGCAAGCGGCAACGTCGTGACGAGGGTCATC-GGGACGAGCAAAGATCT
1 GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGACAAGCAAAGATCT
* * * *
110079345 CTTGAGGTAGGAGCAGGGGCGATGTCATGAAGAGGAGA-TTCATGATGTCGCGACGATATCTCAC
66 CTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTT-ATGACGTCGCAACGATATCTCAC
*
110079409 CTAATGTAGTTGCGTTTTAGACTCCAA
130 CTAATGTAGCTGCGTTTTAGACTCCAA
110079436 GCAT
1 GCAT
110079440 TACTTCTTCA
Statistics
Matches: 147, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
154 2 0.01
155 101 0.69
157 44 0.30
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (156 bp):
GCATGATGTCACAACGAACAAGCGGCAACATCGTGACGAGGGTCATCGGGGACAAGCAAAGATCT
CTTGAGGTAGGAGCAGGGGCGACGTCACGAAGAGGAGAGTTATGACGTCGCAACGATATCTCACC
TAATGTAGCTGCGTTTTAGACTCCAA
Found at i:110080231 original size:22 final size:21
Alignment explanation
Indices: 110080192--110080250 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
110080182 ATTTGAGTTA
**
110080192 ATTTAGAAATTTAATCAA-ATT
1 ATTTA-AAATTTTTTCAATATT
110080213 ATGTTAAAATATTTTTCAATTATT
1 AT-TTAAAAT-TTTTTCAA-TATT
110080237 ATTTAAAATTTTTT
1 ATTTAAAATTTTTT
110080251 ATATCCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
21 6 0.19
22 14 0.44
23 7 0.22
24 5 0.16
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
ATTTAAAATTTTTTCAATATT
Found at i:110082294 original size:21 final size:22
Alignment explanation
Indices: 110082270--110082321 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 22
110082260 ACTTTTCTTC
* *
110082270 ATATGATATAAAT-TATATAAT
1 ATATGATATAAATAAAAATAAT
* *
110082291 ATATAAAATAAATGAAAAATAAT
1 ATATGATATAAAT-AAAAATAAT
110082314 ATATGATA
1 ATATGATA
110082322 AATTTAAAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 11 0.48
23 12 0.52
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (22 bp):
ATATGATATAAATAAAAATAAT
Found at i:110089088 original size:44 final size:44
Alignment explanation
Indices: 110089025--110089111 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
110089015 TTAATCTCTA
110089025 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
1 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
110089069 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTA
1 TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTA
110089112 ATTACTAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (44 bp):
TTTTCTCCCTTACAAAATCTCATACTTGAGATTTATGGTTTTAG
Found at i:110095722 original size:13 final size:14
Alignment explanation
Indices: 110095698--110095732 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
110095688 TTACAATAAC
*
110095698 TATAAAATATAAAAA
1 TATAAAATA-AAAAT
110095713 TATAAAATAAAAAT
1 TATAAAATAAAAAT
110095727 TATAAA
1 TATAAA
110095733 TAACTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
TATAAAATAAAAAT
Found at i:110095894 original size:21 final size:21
Alignment explanation
Indices: 110095870--110095925 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
110095860 TGACCAATTA
*
110095870 TAATTTATAATTTTAATTTTT
1 TAATTTATATTTTTAATTTTT
* *
110095891 TAATTTTTATTTTTATTTTTT
1 TAATTTATATTTTTAATTTTT
*
110095912 TAATATATATTTTT
1 TAATTTATATTTTT
110095926 GAATAATGTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TAATTTATATTTTTAATTTTT
Found at i:110096339 original size:29 final size:27
Alignment explanation
Indices: 110096306--110096364 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
110096296 AAATTTAATT
110096306 TTACTTAAAATTCAATTACTTTTCATAAA
1 TTACTTAAAATTC--TTACTTTTCATAAA
* **
110096335 TTACTTAAAGTTCTTGTTTTTCATAAA
1 TTACTTAAAATTCTTACTTTTCATAAA
110096362 TTA
1 TTA
110096365 AATAAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 15 0.56
29 12 0.44
ACGTcount: A:0.36, C:0.12, G:0.03, T:0.49
Consensus pattern (27 bp):
TTACTTAAAATTCTTACTTTTCATAAA
Found at i:110096589 original size:25 final size:25
Alignment explanation
Indices: 110096551--110096598 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
110096541 AACAAGAACC
110096551 AATTGTACATTTTATTTGAATTTCT
1 AATTGTACATTTTATTTGAATTTCT
110096576 AATTGTAC-TCTTTATTTGAATTT
1 AATTGTACAT-TTTATTTGAATTT
110096599 TGATTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.56
Consensus pattern (25 bp):
AATTGTACATTTTATTTGAATTTCT
Found at i:110102863 original size:32 final size:32
Alignment explanation
Indices: 110102818--110102881 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
110102808 TGTAAGAACC
110102818 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
1 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
*
110102850 TTCTCAAGGTCGCTCTAAATCAGAATTGCTAT
1 TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
110102882 CATCCTAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (32 bp):
TTCTCAAGATCGCTCTAAATCAGAATTGCTAT
Found at i:110115560 original size:18 final size:16
Alignment explanation
Indices: 110115536--110115579 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
110115526 TTTTATACCA
110115536 TATTATATAATTATT-T
1 TATTATAT-ATTATTGT
110115552 TATTATATATTATTGT
1 TATTATATATTATTGT
110115568 TATTATATATTA
1 TATTATATATTA
110115580 CTTTTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TATTATATATTATTGT
Found at i:110115577 original size:16 final size:15
Alignment explanation
Indices: 110115536--110115584 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 15
110115526 TTTTATACCA
110115536 TATTATATAATTATTT
1 TATTATAT-ATTATTT
110115552 TATTATATATTATTGT
1 TATTATATATTATT-T
110115568 TATTATATATTACTTT
1 TATTATATATTA-TTT
110115584 T
1 T
110115585 TCTTTTCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.19
16 23 0.74
17 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TATTATATATTATTT
Found at i:110119050 original size:14 final size:16
Alignment explanation
Indices: 110119031--110119067 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
110119021 AATATCCTTT
110119031 TTTGCAT-TCAT-GCA
1 TTTGCATCTCATAGCA
110119045 TTTGCATCTCATAGCA
1 TTTGCATCTCATAGCA
110119061 TTT-CATC
1 TTTGCATC
110119068 ATATCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (16 bp):
TTTGCATCTCATAGCA
Found at i:110123655 original size:21 final size:21
Alignment explanation
Indices: 110123616--110123655 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
110123606 CATTGAGGTC
* *
110123616 TTGAGAAGATTGTACTTGAGA
1 TTGAGAAAATTGTAATTGAGA
*
110123637 TTGAGAAAATTTTAATTGA
1 TTGAGAAAATTGTAATTGA
110123656 AGCTCAATCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.38
Consensus pattern (21 bp):
TTGAGAAAATTGTAATTGAGA
Found at i:110127430 original size:44 final size:44
Alignment explanation
Indices: 110127376--110127554 Score: 161
Period size: 44 Copynumber: 4.1 Consensus size: 44
110127366 TCAGCATGGT
* *
110127376 ATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGC
1 ATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGGC
* * *
110127420 ATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGAC
1 ATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGGC
* * * * * **
110127464 ATTCC-TATGCTTACAGCGAAGCAGATCGAGGATTTCAGCA--TGGC
1 A-TCCTTGTGTTTATAGGGAA-CAGATCGAAGATAGCAG-ATTTGGC
*
110127508 ATCCTTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGC
1 ATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAGCAGATTTGGC
110127552 ATC
1 ATC
110127555 TCTGTATTGT
Statistics
Matches: 106, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.02
43 14 0.13
44 71 0.67
45 18 0.17
46 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
ATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGGC
Found at i:110127580 original size:132 final size:132
Alignment explanation
Indices: 110127341--110127590 Score: 380
Period size: 132 Copynumber: 1.9 Consensus size: 132
110127331 GCAGATCTGA
*
110127341 CTTACAGCGAAGCAGATCGAAGATTTCAGCATGGTATCCCTGTGTTTATAGGGAACAAGTTGAAG
1 CTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG
* * *
110127406 ATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATTCCTA
66 ATAGCAGATTTGGCATCCTTGTATTTACAGAGAACAGATCGAAGATAACAGATATGACATTCCTA
110127471 TG
131 TG
* *
110127473 CTTACAGCGAAGCAGATCGAGGATTTCAGCATGGCATCCTTGTGTTTATAGGGAACAAGTTGAAG
1 CTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG
* *
110127538 ATAGCAGATTTGGCAT-CTCTGTATTGT-CAGAGAGCATG-TCGAAGATACCAGAT
66 ATAGCAGATTTGGCATCCT-TGTATT-TACAGAGAACA-GATCGAAGATAACAGAT
110127591 TTGGCATCTC
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
131 2 0.02
132 103 0.96
133 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (132 bp):
CTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG
ATAGCAGATTTGGCATCCTTGTATTTACAGAGAACAGATCGAAGATAACAGATATGACATTCCTA
TG
Found at i:110127582 original size:44 final size:44
Alignment explanation
Indices: 110127534--110127640 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
110127524 GGAACAAGTT
*
110127534 GAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAGAGCATG-TC
1 GAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCA-GATC
* *
110127578 GAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
* *
110127622 GAAACATAGCTGATTTGGC
1 G-AAGATAGCAGATTTGGC
110127641 TTTCACGTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 40 0.73
45 14 0.25
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (44 bp):
GAAGATAGCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
Found at i:110127596 original size:88 final size:88
Alignment explanation
Indices: 110127402--110127598 Score: 192
Period size: 88 Copynumber: 2.2 Consensus size: 88
110127392 GGAACAAGTT
*
110127402 GAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
1 GAAGATACCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
*
110127467 CCTATGCTTACAGCGAAGCAGATC
66 CCTATGC-TACAGAGAAGCAGATC
* ** * * * *
110127491 GAGGATTTCAGCA--TGGCATCCTTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATTTGGCA
1 GAAGATACCAG-ATTTGGCATCCTTGTGTTTATAGGGAACAGA-TCGAAGATAACAGATATGACA
*
110127553 TCTCTGTATTG-T-CAGAG-AGCATG-TC
64 T-TC-CTA-TGCTACAGAGAAGCA-GATC
110127578 GAAGATACCAGATTTGGCATC
1 GAAGATACCAGATTTGGCATC
110127599 TCTGTATTGG
Statistics
Matches: 88, Mismatches: 12, Indels: 17
0.75 0.10 0.15
Matches are distributed among these distances:
86 1 0.01
87 15 0.17
88 56 0.64
89 11 0.12
90 3 0.03
91 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (88 bp):
GAAGATACCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAACAGATATGACATT
CCTATGCTACAGAGAAGCAGATC
Done.