Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 344 of 356
Found at i:110127947 original size:206 final size:207
Alignment explanation
Indices: 110127613--110128038 Score: 705
Period size: 206 Copynumber: 2.1 Consensus size: 207
110127603 TATTGGCGGA
* * * * *
110127613 GAGCAGATCGAA-ACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGAT
* *
110127677 TTGGCATTCTCTGTGTTGTCAAAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAGAGCAG
66 TTGGCAGTCTCTGTGTTGTCAAAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGAAGAGCAG
*
110127742 ATACATAGCAGATCTCACCTTCAGACGATTAGACTGAAGCAAGATCCAAGATGATTTGGCATCCT
131 ATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCCT
110127807 TGTGCTTACAAG
196 TGTGCTTACAAG
110127819 GAGCAAATCGAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGAT
* *
110127884 TTGTC-GTCTCTGTAG-TGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGAAGAGCA
66 TTGGCAGTCTCTGT-GTTGTCAAAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGAAGAGCA
* *
110127947 GATACATAGCAGATCTGACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATTC
130 GATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCC
110128012 TTGTGCTTACAAG
195 TTGTGCTTACAAG
*
110128025 GAACAAATCGAAGA
1 GAGCAAATCGAAGA
110128039 GGCAAATTTG
Statistics
Matches: 205, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
206 152 0.74
207 53 0.26
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (207 bp):
GAGCAAATCGAAGACATAGCTAATTTAGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGAT
TTGGCAGTCTCTGTGTTGTCAAAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGAAGAGCAG
ATACATAGCAGATCTCACCTTCAGACGATTACACTGAAGCAAGATCCAAGATGATTTGGCATCCT
TGTGCTTACAAG
Found at i:110129759 original size:16 final size:15
Alignment explanation
Indices: 110129738--110129785 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
110129728 TTTTATACCA
110129738 TATTATATAATTACTT
1 TATTATAT-ATTACTT
*
110129754 TATTATATATTATTGT
1 TATTATATATTACT-T
110129770 TATTATATATTACTT
1 TATTATATATTACTT
110129785 T
1 T
110129786 TTCTTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 7 0.24
16 22 0.76
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (15 bp):
TATTATATATTACTT
Found at i:110139891 original size:13 final size:13
Alignment explanation
Indices: 110139871--110139904 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
110139861 AAAAAATAAA
110139871 ATAAAATATAATTT
1 ATAAAATAT-ATTT
110139885 A-AAAATATATTT
1 ATAAAATATATTT
110139897 ATAAAATA
1 ATAAAATA
110139905 AACCTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.26
13 13 0.68
14 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAAAATATATTT
Found at i:110139904 original size:26 final size:25
Alignment explanation
Indices: 110139871--110139921 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
110139861 AAAAAATAAA
110139871 ATAAAATATAA-TTTAAAAATATATTT
1 ATAAAATA-AACTTT-AAAATATATTT
110139897 ATAAAATAAACCTTTAAAATATATT
1 ATAAAATAAA-CTTTAAAATATATT
110139922 ATCAGGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.78
27 3 0.13
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAAAATAAACTTTAAAATATATTT
Found at i:110140145 original size:44 final size:45
Alignment explanation
Indices: 110140076--110140168 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
110140066 GTTTTTTATC
* *
110140076 ATTTTAATATTTAAATTATCATTCTATTATTCGGTTTAGTCCAA-
1 ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
* ** *
110140120 ATTTTTATATTTAAATTATTTTTCTATTACTCAGTTTAGTTCAAT
1 ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
110140165 ATTT
1 ATTT
110140169 GTGATGGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 38 0.90
45 4 0.10
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (45 bp):
ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
Found at i:110144919 original size:16 final size:16
Alignment explanation
Indices: 110144898--110144929 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
110144888 TATATATTAA
110144898 TATAATTATTATTTTT
1 TATAATTATTATTTTT
110144914 TATAATTATTATTTTT
1 TATAATTATTATTTTT
110144930 CATTTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATAATTATTATTTTT
Found at i:110145178 original size:23 final size:24
Alignment explanation
Indices: 110145127--110145178 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
110145117 ATTTTAAAAA
*
110145127 CAAAATTAAATATTATATAATATT
1 CAAAATTAAAAATTATATAATATT
*
110145151 TAAAATATAAAAATTA-AT-ATATT
1 CAAAAT-TAAAAATTATATAATATT
110145174 CAAAA
1 CAAAA
110145179 AAATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 9 0.38
24 7 0.29
25 8 0.33
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
CAAAATTAAAAATTATATAATATT
Found at i:110165740 original size:22 final size:19
Alignment explanation
Indices: 110165722--110165758 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
110165712 TTTTAAGTTT
110165722 GCCCATATTATTTTTTAAG
1 GCCCATATTATTTTTTAAG
*
110165741 GTCCATATTATTTTTTAA
1 GCCCATATTATTTTTTAA
110165759 AAAATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (19 bp):
GCCCATATTATTTTTTAAG
Found at i:110167313 original size:13 final size:13
Alignment explanation
Indices: 110167293--110167326 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
110167283 AAAAAATAAA
110167293 ATAAAATATAATTT
1 ATAAAATAT-ATTT
110167307 A-AAAATATATTT
1 ATAAAATATATTT
110167319 ATAAAATA
1 ATAAAATA
110167327 AACCTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.26
13 13 0.68
14 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAAAATATATTT
Found at i:110167326 original size:26 final size:25
Alignment explanation
Indices: 110167293--110167343 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
110167283 AAAAAATAAA
110167293 ATAAAATATAA-TTTAAAAATATATTT
1 ATAAAATA-AACTTT-AAAATATATTT
110167319 ATAAAATAAACCTTTAAAATATATT
1 ATAAAATAAA-CTTTAAAATATATT
110167344 ATCAGGTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.78
27 3 0.13
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAAAATAAACTTTAAAATATATTT
Found at i:110167564 original size:44 final size:45
Alignment explanation
Indices: 110167495--110167587 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
110167485 TGTTTTTATC
* *
110167495 ATTTTAATATTTAAATTATCATTCTATTATTCGGTTTAGTCCAA-
1 ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
* ** *
110167539 ATTTTTATATTTAAATTATTTTTCTATTACTCAGTTTAGTTCAAT
1 ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
110167584 ATTT
1 ATTT
110167588 GTGATGGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 38 0.90
45 4 0.10
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55
Consensus pattern (45 bp):
ATTTTAATATTTAAATTATCATTCTATTACTCAGTTTAGTCCAAT
Found at i:110172338 original size:16 final size:16
Alignment explanation
Indices: 110172317--110172348 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
110172307 TATATATTAA
110172317 TATAATTATTATTTTT
1 TATAATTATTATTTTT
110172333 TATAATTATTATTTTT
1 TATAATTATTATTTTT
110172349 CATTTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATAATTATTATTTTT
Found at i:110172606 original size:23 final size:24
Alignment explanation
Indices: 110172555--110172606 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
110172545 ATTTTAAAAA
*
110172555 CAAAATTAAATATTATATAATATT
1 CAAAATTAAAAATTATATAATATT
*
110172579 TAAAATATAAAAATTA-AT-ATATT
1 CAAAAT-TAAAAATTATATAATATT
110172602 CAAAA
1 CAAAA
110172607 AAATAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 9 0.38
24 7 0.29
25 8 0.33
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
CAAAATTAAAAATTATATAATATT
Found at i:110172641 original size:9 final size:9
Alignment explanation
Indices: 110172619--110172648 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
110172609 ATAATTATCC
110172619 AAAATTTT-
1 AAAATTTTA
110172627 AAAATTTTA
1 AAAATTTTA
110172636 AAAATTTTA
1 AAAATTTTA
110172645 AAAA
1 AAAA
110172649 GTTCCTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAATTTTA
Found at i:110179099 original size:30 final size:31
Alignment explanation
Indices: 110179059--110179128 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
110179049 AGTTTATATA
* * *
110179059 TTTATAATTTTTAAAGGA-TTAAA-TTTAATT
1 TTTATCATTTTTAAAGGAGTCAAAGTGTAA-T
*
110179089 TTTATCATTTTTAAGGGAGTCAAAGTGTAAT
1 TTTATCATTTTTAAAGGAGTCAAAGTGTAAT
110179120 TTTATCATT
1 TTTATCATT
110179129 ACAAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 16 0.47
31 14 0.41
32 4 0.12
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.50
Consensus pattern (31 bp):
TTTATCATTTTTAAAGGAGTCAAAGTGTAAT
Found at i:110185532 original size:19 final size:19
Alignment explanation
Indices: 110185508--110185546 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
110185498 AATATACTAG
110185508 TGATAGAGAAAAGATTATA
1 TGATAGAGAAAAGATTATA
110185527 TGATAGAGAAAAGATTATA
1 TGATAGAGAAAAGATTATA
110185546 T
1 T
110185547 AAAATTGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (19 bp):
TGATAGAGAAAAGATTATA
Found at i:110186420 original size:62 final size:62
Alignment explanation
Indices: 110186323--110186446 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
110186313 AAGCTTCTTG
110186323 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAACCAATC
1 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAACCAATC
* *
110186385 CTCTTTTGTTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAATCAATC
1 CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAACCAATC
110186447 ATACTGTGCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.23, C:0.29, G:0.08, T:0.40
Consensus pattern (62 bp):
CTCTTTTGCTCTCTGTCTTGTTATCTTCTTTTGCTACTGTCAAAACCCCAACAAAACCAATC
Found at i:110190742 original size:19 final size:21
Alignment explanation
Indices: 110190701--110190748 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
110190691 TTAAAATTTT
110190701 AACTAAAAATATTAAAATAAA
1 AACTAAAAATATTAAAATAAA
* *
110190722 AA-TAAAAAT-TTATAATCAA
1 AACTAAAAATATTAAAATAAA
110190741 AACTAAAA
1 AACTAAAA
110190749 TAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (21 bp):
AACTAAAAATATTAAAATAAA
Found at i:110194904 original size:46 final size:48
Alignment explanation
Indices: 110194839--110194942 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
110194829 CCATATGATG
* * * *
110194839 TTTTTGGGGTTTAGGGTTTTAGGA-AT-TATAGATTAGTGTTTAGGGT
1 TTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTAGGAT
* *
110194885 TTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTCTATGAT
1 TTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTAGGAT
110194933 TTTTTTGGGT
1 TTTTTTGGGT
110194943 GTTTAAGGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
46 23 0.46
47 1 0.02
48 26 0.52
ACGTcount: A:0.18, C:0.02, G:0.30, T:0.50
Consensus pattern (48 bp):
TTTTTTGGGTTTAGGGTTTTAGGAGATATATAGACTAGTGTCTAGGAT
Found at i:110194936 original size:48 final size:48
Alignment explanation
Indices: 110194832--110194969 Score: 147
Period size: 46 Copynumber: 2.9 Consensus size: 48
110194822 TCAACATCCA
* * * *
110194832 TATGATGTTTTTGGGGTTTAGGGTTTTAGGA-AT-TATAGATTAGTGTT
1 TATGAT-TTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTC
* *
110194879 TAGGGTTTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTC
1 TATGATTTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTC
* * *
110194927 TATGATTTTTTTGGGTGTTTAAGGATTTAGGGGTTATAT-GACT
1 TATGATTTTTTT-GG-GTTTAGGGTTTTAGGAGTTATATAGACT
110194970 TTTAGCGGCG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
46 23 0.30
47 5 0.07
48 22 0.29
49 6 0.08
50 20 0.26
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (48 bp):
TATGATTTTTTTGGGTTTAGGGTTTTAGGAGTTATATAGACTAGTGTC
Found at i:110195072 original size:41 final size:41
Alignment explanation
Indices: 110194969--110195180 Score: 272
Period size: 41 Copynumber: 5.3 Consensus size: 41
110194959 GTTATATGAC
* * *
110194969 TTTTAGCGGCGCTCTGCCAAAAACGCCGCTATTGCTCTATT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
* * **
110195010 TTTTA---GCGCTTTACTAAAAACGGTGCTATTGCTCTGTT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
* *
110195048 TTTTAGCGGCGCTTCGCAAAAAACGCCGCTATTGCTCT-AT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
*
110195088 TTTTAGCGGCGCTTTGCCAAAAACGCCGCTATTGCTCTGTT
1 TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
* *
110195129 TTTTAGCGGCGCTTTGCCAAAAAAAGCCGCTATTGCTATG-T
1 TTTTAGCGGCGCTTTG-CAAAAAACGCCGCTATTGCTCTGTT
110195170 TTTTAGCGGCG
1 TTTTAGCGGCG
110195181 TTTTTGGCAA
Statistics
Matches: 148, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
38 32 0.22
40 37 0.25
41 59 0.40
42 20 0.14
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGCTTTGCAAAAAACGCCGCTATTGCTCTGTT
Found at i:110195139 original size:81 final size:81
Alignment explanation
Indices: 110194969--110195200 Score: 294
Period size: 81 Copynumber: 2.9 Consensus size: 81
110194959 GTTATATGAC
* * *
110194969 TTTTAGCGGCGC-TCTGCCAAAAACGCCGCTATTGCTCTATTTTTTA---GCGCTTTACTAAAAA
1 TTTTAGCGGCGCTTC-GCAAAAAACGCCGCTATTGCTCTA-TTTTTAGCGGCGCTTTGCCAAAAA
**
110195030 CGGTGCTATTGCTCTGTT
64 CGCCGCTATTGCTCTGTT
110195048 TTTTAGCGGCGCTTCGCAAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGCTTTGCCAAAAACG
1 TTTTAGCGGCGCTTCGCAAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGCTTTGCCAAAAACG
110195113 CCGCTATTGCTCTGTT
66 CCGCTATTGCTCTGTT
* * * * * *
110195129 TTTTAGCGGCGCTTTGCCAAAAAAAGCCGCTATTGCTATGTTTTTAGCGGCGTTTTTGGC-AAAA
1 TTTTAGCGGCGCTTCG-CAAAAAACGCCGCTATTGCTCTATTTTTAGCGGCG-CTTTGCCAAAAA
110195193 CGCCGCTA
64 CGCCGCTA
110195201 ATGTATATTT
Statistics
Matches: 136, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
78 6 0.04
79 35 0.26
80 2 0.01
81 44 0.32
82 44 0.32
83 5 0.04
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (81 bp):
TTTTAGCGGCGCTTCGCAAAAAACGCCGCTATTGCTCTATTTTTAGCGGCGCTTTGCCAAAAACG
CCGCTATTGCTCTGTT
Found at i:110198932 original size:16 final size:16
Alignment explanation
Indices: 110198913--110198953 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
110198903 TAAAAATAAT
*
110198913 TTAAAATATAAATTTA
1 TTAATATATAAATTTA
*
110198929 TTAATATATATATTTA
1 TTAATATATAAATTTA
110198945 TTAATATAT
1 TTAATATAT
110198954 GTAAATACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:110199058 original size:19 final size:19
Alignment explanation
Indices: 110199034--110199071 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
110199024 CATTTAAACA
* *
110199034 CCAGAAATGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
110199053 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
110199072 TTCAAAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:110200329 original size:40 final size:39
Alignment explanation
Indices: 110200275--110200361 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 39
110200265 TAATTAATTT
*
110200275 TTTAAAATTTTAAAAA-ATAAAAAAAATATATTTTAAAAAA
1 TTTAAAATTATAAAAATATAAAAAAAATAT-TTTT-AAAAA
*
110200315 TTTAAAATTATAAAAATTATAAAAAAAATATTTTTTAAAA
1 TTTAAAATTATAAAAA-TATAAAAAAAATATTTTTAAAAA
110200355 TTTAAAA
1 TTTAAAA
110200362 AATTAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 26 0.60
41 4 0.09
42 13 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (39 bp):
TTTAAAATTATAAAAATATAAAAAAAATATTTTTAAAAA
Found at i:110202439 original size:62 final size:62
Alignment explanation
Indices: 110202371--110202495 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
110202361 AAGTTGATGA
110202371 TGTGTATATACCCACAACATTGGATTACACAGATGCGCTTCAACTTTTCAATTTGACAGCTT
1 TGTGTATATACCCACAACATTGGATTACACAGATGCGCTTCAACTTTTCAATTTGACAGCTT
110202433 TGTGTATATACCCACAACATTGGATTACACAGATGCGCTTCAACTTTTCAATTTGACAGCTT
1 TGTGTATATACCCACAACATTGGATTACACAGATGCGCTTCAACTTTTCAATTTGACAGCTT
110202495 T
1 T
110202496 CCATAGTGAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (62 bp):
TGTGTATATACCCACAACATTGGATTACACAGATGCGCTTCAACTTTTCAATTTGACAGCTT
Found at i:110205532 original size:39 final size:39
Alignment explanation
Indices: 110205477--110205558 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
110205467 CAAGGAAAAT
*
110205477 GTTTGATATTACTATGCCTGGAAGTGAAATCCCAGAATG
1 GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
* * *
110205516 GTTTGATATTATTATGCCCGGAAGTGGAATCTCAGAATG
1 GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
110205555 GTTT
1 GTTT
110205559 AGCCAACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (39 bp):
GTTTGATATTACTATGCCCGGAAGTGAAATCCCAGAATG
Found at i:110216825 original size:30 final size:30
Alignment explanation
Indices: 110216784--110216851 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
110216774 TATTATGTTG
*
110216784 TTATTGGTTGAATATTATATAACTCTTATT
1 TTATTGTTTGAATATTATATAACTCTTATT
*
110216814 TTATTGTTTGAATATTGTATAACTCTTATT
1 TTATTGTTTGAATATTATATAACTCTTATT
110216844 TTATTGTT
1 TTATTGTT
110216852 AATTTTGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.57
Consensus pattern (30 bp):
TTATTGTTTGAATATTATATAACTCTTATT
Found at i:110217967 original size:12 final size:12
Alignment explanation
Indices: 110217950--110217982 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
110217940 TGCTCAATCG
*
110217950 AAGAAATACTTC
1 AAGAAAGACTTC
110217962 AAGAAAGACTTC
1 AAGAAAGACTTC
110217974 AAGAAAGAC
1 AAGAAAGAC
110217983 GTTGGGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.15
Consensus pattern (12 bp):
AAGAAAGACTTC
Found at i:110220618 original size:14 final size:15
Alignment explanation
Indices: 110220599--110220629 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
110220589 CAAGAAATGG
110220599 GAAGAAAAAT-TGTT
1 GAAGAAAAATGTGTT
110220613 GAAGAAAAATGTGTT
1 GAAGAAAAATGTGTT
110220628 GA
1 GA
110220630 TAAACCTGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (15 bp):
GAAGAAAAATGTGTT
Found at i:110223907 original size:31 final size:31
Alignment explanation
Indices: 110223872--110223931 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
110223862 CTTAAGGTAA
110223872 TATCTTCACCAAATTTTGAACACATCCACTC
1 TATCTTCACCAAATTTTGAACACATCCACTC
110223903 TATCTTCACCAAATTTTGAACACATCCAC
1 TATCTTCACCAAATTTTGAACACATCCAC
110223932 CAACAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.33, C:0.32, G:0.03, T:0.32
Consensus pattern (31 bp):
TATCTTCACCAAATTTTGAACACATCCACTC
Found at i:110228245 original size:25 final size:25
Alignment explanation
Indices: 110228216--110228295 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
110228206 GTTTTAGCTA
*
110228216 ACTTTAAGTTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
*
110228241 ACTTTAAATTAAGAATTCTATTTGG
1 ACTTTAAATTAAGAATTCTATTAGG
* **
110228266 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
110228291 ACTTT
1 ACTTT
110228296 CCCTTTGTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTCTATTAGG
Found at i:110232838 original size:25 final size:25
Alignment explanation
Indices: 110232809--110232888 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
110232799 TTTTTTATAA
110232809 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
* *
110232834 ACTTTAAATTAAAAATTCTATTTGG
1 ACTTTAAATTAAGAATTCTATTAGG
* **
110232859 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTCTATTAGG
110232884 ACTTT
1 ACTTT
110232889 CCCTTTGTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTCTATTAGG
Found at i:110233528 original size:150 final size:152
Alignment explanation
Indices: 110233097--110233609 Score: 692
Period size: 153 Copynumber: 3.4 Consensus size: 152
110233087 ATTCCACGTC
* * *
110233097 ATATTTCTGGTCTATCCTCTTTGTGGCATCCTGATCTTAGTGGTAACAATTTCATCAGCATACCT
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCT
* *
110233162 GCATCTCTTACTCGACTCTAAAAGCTTGGAA-ATCTTATATTGTCAAATTGCAACATATGCACTC
65 GCATCTCTTACTCGACTCTCAAAGCTT-GAATATCTTATATTGTCAAATTGCAACATGTGCACTC
110233226 TTGGTGAAGCAGATAATCATAGTG
129 TTGGTGAAGCAGATAATCATAGTG
* * *
110233250 ATATTTCTGATCTATCCTCTTTGAGTCATCTCGATCTTAGTGGTAACAATTTCATAAGCATACCT
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCT
* ** *
110233315 GCATCTCTTACTCGACTCTCAAAGCTTAAAT-TGCTTGCATTATCAAATTGCAACATGTGCACTC
65 GCATCTCTTACTCGACTCTCAAAGCTTGAATAT-CTTATATTGTCAAATTGCAACATGTGCACTC
* * * * *
110233379 TTGGTAAAGAAAATACTCATAGTT
129 TTGGTGAAGCAGATAATCATAGTG
*
110233403 ATATTTCTGATCTATCCTC-TGAGGCATCTTGATCTTAGTGATAACAATTTCATCAGCATACCTG
1 ATATTTCTGATCTATCCTCTTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCTG
* *
110233467 CAT-TCTTACTCGACTATCCAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
66 CATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
* * *
110233531 AGTGAAGCAGATATTCATGGTG
131 GGTGAAGCAGATAATCATAGTG
* * ** * *
110233553 ATATTTCTGGTATATCCTCTTTGATACGTCTTGATCTTAGTGGTAAGAATTTCATCA
1 ATATTTCTGATCTATCCTC-TTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCA
110233610 CCATTCCTTT
Statistics
Matches: 314, Mismatches: 41, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
150 85 0.27
151 45 0.14
152 34 0.11
153 150 0.48
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (152 bp):
ATATTTCTGATCTATCCTCTTGAGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATACCTG
CATCTCTTACTCGACTCTCAAAGCTTGAATATCTTATATTGTCAAATTGCAACATGTGCACTCTT
GGTGAAGCAGATAATCATAGTG
Found at i:110235490 original size:41 final size:41
Alignment explanation
Indices: 110235370--110235493 Score: 137
Period size: 41 Copynumber: 3.0 Consensus size: 41
110235360 TTGTAAAACA
** *
110235370 CAGAGCAATAGC-G-GCATTTTACTAAAATCGCCGCTAAAA-A
1 CAGAGCAATAGCAGCGC-TTTTGGTAAAA-CGCCGCTAAAAGT
* *
110235410 CAGAGCAATAGCAGCGCTTTTGGTAAAACACCGTTAAAAGT
1 CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
* * *
110235451 CGGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGT
1 CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
110235492 CA
1 CA
110235494 TATAACCCTT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
40 21 0.30
41 47 0.67
42 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (41 bp):
CAGAGCAATAGCAGCGCTTTTGGTAAAACGCCGCTAAAAGT
Found at i:110235745 original size:21 final size:22
Alignment explanation
Indices: 110235720--110235776 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
110235710 TTTATTTTTT
*
110235720 GGTTTACGGTTTAAT-ATTTAA
1 GGTTTAAGGTTTAATGATTTAA
*
110235741 GGTTTAAGGTCT-ATGATTTAA
1 GGTTTAAGGTTTAATGATTTAA
*
110235762 GGTTTTATGGTTTAA
1 GG-TTTAAGGTTTAA
110235777 GGTTTAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 18 0.62
22 8 0.28
23 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (22 bp):
GGTTTAAGGTTTAATGATTTAA
Found at i:110235746 original size:7 final size:7
Alignment explanation
Indices: 110235720--110235783 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
110235710 TTTATTTTTT
*
110235720 GGTTTAC
1 GGTTTAA
110235727 GGTTTAA
1 GGTTTAA
**
110235734 TATTTAA
1 GGTTTAA
110235741 GGTTTAA
1 GGTTTAA
* *
110235748 GGTCTAT
1 GGTTTAA
*
110235755 GATTTAA
1 GGTTTAA
*
110235762 GGTTTTAT
1 GG-TTTAA
110235770 GGTTTAA
1 GGTTTAA
110235777 GGTTTAA
1 GGTTTAA
110235784 TGGCCATGGG
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.27, C:0.03, G:0.23, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:110235775 original size:15 final size:15
Alignment explanation
Indices: 110235736--110235786 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
110235726 CGGTTTAATA
*
110235736 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* *
110235750 TCTATGATTTAAGGT
1 TTTATGGTTTAAGGT
110235765 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
110235780 TTAATGG
1 TTTATGG
110235787 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 11 0.37
15 19 0.63
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:110235782 original size:14 final size:14
Alignment explanation
Indices: 110235720--110235782 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
110235710 TTTATTTTTT
*
110235720 GGTTTACGGTTTAA
1 GGTTTATGGTTTAA
** *
110235734 TATTTAAGGTTTAA
1 GGTTTATGGTTTAA
* *
110235748 GGTCTATGATTTAA
1 GGTTTATGGTTTAA
110235762 GGTTTTATGGTTTAA
1 GG-TTTATGGTTTAA
110235777 GGTTTA
1 GGTTTA
110235783 ATGGCCATGG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 26 0.68
15 12 0.32
ACGTcount: A:0.25, C:0.03, G:0.24, T:0.48
Consensus pattern (14 bp):
GGTTTATGGTTTAA
Found at i:110236586 original size:104 final size:102
Alignment explanation
Indices: 110236399--110236669 Score: 463
Period size: 103 Copynumber: 2.6 Consensus size: 102
110236389 CCTAATTTTT
*
110236399 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACG-TTTTAGACAAAACACCACAAAAAT
1 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
*
110236463 ATGTTAAAAATTTTGAAAGAAAAAGAATAGAAAAAAATA
66 ATGTTAAAAATTTTAAAAGAAAAAGAATAG-AAAAAA-A
* *
110236502 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGGCGTTTTTAGACGAAACGCCACAAAAAT
1 TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
110236567 ATGTTAAAAATTTTAAAAGAAAAAGAATAGAAAAAAA
66 ATGTTAAAAATTTTAAAAGAAAAAGAATAGAAAAAAA
*
110236604 TGTTAAAAATAAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAAGGCCACAAAAA
1 TGTTAAAAAT-AAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAA
110236669 T
65 T
110236670 TTAAACTATA
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
102 11 0.07
103 97 0.61
104 51 0.32
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.24
Consensus pattern (102 bp):
TGTTAAAAATAAAAAAAATTAAAATTAAGCAATAGTGACGTTTTTAGACAAAACGCCACAAAAAT
ATGTTAAAAATTTTAAAAGAAAAAGAATAGAAAAAAA
Found at i:110236626 original size:17 final size:19
Alignment explanation
Indices: 110236592--110236628 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
110236582 AAAGAAAAAG
*
110236592 AATAGAAAAAAATGTTAAA
1 AATAGAAAAAAATATTAAA
110236611 AATA-AAAAAAA-ATTAAA
1 AATAGAAAAAAATATTAAA
110236628 A
1 A
110236629 TTAAGCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (19 bp):
AATAGAAAAAAATATTAAA
Found at i:110236693 original size:20 final size:20
Alignment explanation
Indices: 110236665--110236702 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
110236655 AAAGGCCACA
*
110236665 AAAATTTAAACTATACTGTG
1 AAAAGTTAAACTATACTGTG
*
110236685 AAAAGTTAAGCTATACTG
1 AAAAGTTAAACTATACTG
110236703 GCGTTTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (20 bp):
AAAAGTTAAACTATACTGTG
Found at i:110242495 original size:43 final size:43
Alignment explanation
Indices: 110242447--110242535 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
110242437 GTCTATTATA
* *
110242447 TAGCGGCATTTTTAGAAAAAGTC-CCGCTAAAGGTCATGACCTT
1 TAGCGGCATTTGTAGAAAAAG-CGCCGCTAAAAGTCATGACCTT
* * *
110242490 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGACCTT
1 TAGCGGCATTTGTAGAAAAAGCGCCGCTAAAAGTCATGACCTT
110242533 TAG
1 TAG
110242536 AATAGACACC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.03
43 39 0.98
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (43 bp):
TAGCGGCATTTGTAGAAAAAGCGCCGCTAAAAGTCATGACCTT
Found at i:110242963 original size:21 final size:21
Alignment explanation
Indices: 110242934--110242976 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
110242924 CATTTTGTTT
*
110242934 ATTTTGTTCATTTGTAACTTG
1 ATTTAGTTCATTTGTAACTTG
* *
110242955 ATTTAGTTCCTTTGTAATTTG
1 ATTTAGTTCATTTGTAACTTG
110242976 A
1 A
110242977 CTTTTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.09, G:0.14, T:0.56
Consensus pattern (21 bp):
ATTTAGTTCATTTGTAACTTG
Found at i:110248616 original size:18 final size:18
Alignment explanation
Indices: 110248595--110248631 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
110248585 TATATTTATA
110248595 TTATTATTA-TTATTATTT
1 TTATTA-TAGTTATTATTT
110248613 TTATTATAGTTATTATTT
1 TTATTATAGTTATTATTT
110248631 T
1 T
110248632 AAGACTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (18 bp):
TTATTATAGTTATTATTT
Found at i:110249998 original size:21 final size:21
Alignment explanation
Indices: 110249972--110250014 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
110249962 TAAATCACAA
110249972 TACGAGTTTTAAATAAAATGC
1 TACGAGTTTTAAATAAAATGC
110249993 TACGAGTTTTAAATAAAATGC
1 TACGAGTTTTAAATAAAATGC
110250014 T
1 T
110250015 TACTCTCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (21 bp):
TACGAGTTTTAAATAAAATGC
Found at i:110256275 original size:133 final size:133
Alignment explanation
Indices: 110256032--110256731 Score: 1098
Period size: 133 Copynumber: 5.3 Consensus size: 133
110256022 TCACCATAGA
* ** * * *
110256032 AGATCTTATTTCCCTGATG-TTATAGTGGAGCAGATCGAAGATGGGGAATCTAGGCTTCCTGATA
1 AGATCTTGTTTCCCTGA-GATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATG
* * *
110256096 TTGCACTGAAGCAGATTTAAACCACCATCCTAGCTCCCTAATGTTGTAGTGGAGTAGGCTGAAGA
65 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
110256161 TTGT
130 TTGT
* * * *
110256165 AGATCTTGTTTCCCTGATATTGCAGTGGAACAGATCGAAGACGGTGAATATAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
* *
110256230 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGGGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
110256295 TGT
131 TGT
* * * *
110256298 AAATCTTGTTTCTCTGAGATTGCAGTGGAGCAGATTGAAGACGGTGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
* *
110256363 TGCAGTGAAGTAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGCGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
110256428 TGT
131 TGT
* * *
110256431 AGATCTTGTTTCCCTGAGATTACAGTAGAGCAGATCGAAGACAGCGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
*
110256496 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGTTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
110256561 TGT
131 TGT
* *
110256564 AAATCTTGTTTCCCTGAGATTGCAGTGGAACAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
1 AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
110256629 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
66 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
110256694 TGT
131 TGT
* * *
110256697 AGATATTGTTTCCCTGA-AGCTGCAGTGAAGCAGAT
1 AGATCTTGTTTCCCTGAGA-TTGCAGTGGAGCAGAT
110256732 TTAAGCACCA
Statistics
Matches: 522, Mismatches: 43, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
132 1 0.00
133 521 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (133 bp):
AGATCTTGTTTCCCTGAGATTGCAGTGGAGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGT
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGT
Found at i:110256366 original size:45 final size:44
Alignment explanation
Indices: 110256177--110256644 Score: 116
Period size: 45 Copynumber: 10.5 Consensus size: 44
110256167 ATCTTGTTTC
* * * *
110256177 CCTGATATTGCAGTGGAACAGATCGAAGACGGTGAATATAGGCTT
1 CCTGATGTTGCAGTGGAGCAGATTGAAGAC-GTGAATCTAGGCTT
* * **** *
110256222 CCTGATGTTGCAGTGAAGCAGATTTAAG-CCACCATCCTA-GCTC
1 CCTGATGTTGCAGTGGAGCAGATTGAAGACGTGAAT-CTAGGCTT
* * * * * ** * * * *
110256265 CCTAAGGTTGTAGGGGAGTAGGCTGAAGATTGTAAATCT-TGTTT
1 CCTGATGTTGCAGTGGAGCAGATTGAAGA-CGTGAATCTAGGCTT
110256309 CTCTGA-GATTGCAGTGGAGCAGATTGAAGACGGTGAATCTAGGCTT
1 C-CTGATG-TTGCAGTGGAGCAGATTGAAGAC-GTGAATCTAGGCTT
* * * **** *
110256355 CCTGATGTTGCAGTGAAGTAGATTTAAG-CCACCATCCTA-GCTC
1 CCTGATGTTGCAGTGGAGCAGATTGAAGACGTGAAT-CTAGGCTT
* * * * * ** * * *
110256398 CCTAAAGTTGTAGCGGAGTAGGCTGAAGA-TTGTAGATCT-TGTTT
1 CCTGATGTTGCAGTGGAGCAGATTGAAGACGTG-A-ATCTAGGCTT
* * * *
110256442 CCCTGA-GATTACAGTAGAGCAGATCGAAGACAGCGAATCTAGGCTT
1 -CCTGATG-TTGCAGTGGAGCAGATTGAAGAC-GTGAATCTAGGCTT
* * **** *
110256488 CCTGATGTTGCAGTGAAGCAGATTTAAG-CCACCATCCTA-GCTC
1 CCTGATGTTGCAGTGGAGCAGATTGAAGACGTGAAT-CTAGGCTT
* * * * * * * * *
110256531 CCTAAAGTTGTAGTGGAGTAGGTTGAAGATTGTAAATCT-TGTTT
1 CCTGATGTTGCAGTGGAGCAGATTGAAGA-CGTGAATCTAGGCTT
* * *
110256575 CCCTGA-GATTGCAGTGGAACAGATCGAAGACGGCGAATCTAGGCTT
1 -CCTGATG-TTGCAGTGGAGCAGATTGAAGAC-GTGAATCTAGGCTT
*
110256621 CCTGATGTTGCAGTGAAGCAGATT
1 CCTGATGTTGCAGTGGAGCAGATT
110256645 TAAGCCACCA
Statistics
Matches: 284, Mismatches: 110, Indels: 58
0.63 0.24 0.13
Matches are distributed among these distances:
43 75 0.26
44 27 0.10
45 167 0.59
46 14 0.05
47 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (44 bp):
CCTGATGTTGCAGTGGAGCAGATTGAAGACGTGAATCTAGGCTT
Found at i:110256768 original size:87 final size:88
Alignment explanation
Indices: 110256629--110256802 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 88
110256619 TTCCTGATGT
110256629 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
1 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
110256694 TGTAGATATTGTTTCCCTGAAGC
66 TGTAGATATTGTTTCCCTGAAGC
110256717 TGCAGTGAAGCAGATTTAAG-CACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
1 TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
*
110256781 TGTAGATCTTGTTTCCCTGAAG
66 TGTAGATATTGTTTCCCTGAAG
110256803 TTGTTGTGGA
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
87 65 0.76
88 20 0.24
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (88 bp):
TGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
TGTAGATATTGTTTCCCTGAAGC
Found at i:110264040 original size:21 final size:21
Alignment explanation
Indices: 110263993--110264044 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
110263983 TACATATAAT
* * *
110263993 AAAATACATATACTAATATTA
1 AAAATAAATATACTAAGAATA
* *
110264014 ATAATAAATATACTAGGAATA
1 AAAATAAATATACTAAGAATA
110264035 AAAATAAATA
1 AAAATAAATA
110264045 AAATAATAGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.29
Consensus pattern (21 bp):
AAAATAAATATACTAAGAATA
Found at i:110264594 original size:23 final size:26
Alignment explanation
Indices: 110264568--110264615 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
110264558 AAATAATGAT
110264568 ATATAC-ATA-ATATATA-TAGAAAC
1 ATATACGATATATATATATTAGAAAC
*
110264591 ATATACGGTATATATATATTAGAAA
1 ATATACGATATATATATATTAGAAA
110264616 TGATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 2 0.10
25 7 0.33
26 6 0.29
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.33
Consensus pattern (26 bp):
ATATACGATATATATATATTAGAAAC
Found at i:110268777 original size:18 final size:18
Alignment explanation
Indices: 110268750--110268824 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
110268740 TACGACCGTT
*
110268750 TACGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* *
110268768 TACGGCACTATTCATGTA
1 TACGGTACTATTCACGTA
*
110268786 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
110268804 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
110268822 TAC
1 TAC
110268825 AGTAGTTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:110282320 original size:21 final size:20
Alignment explanation
Indices: 110282282--110282322 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
110282272 TCCAGTTTCC
*
110282282 AATCAATATACATTTCAATT
1 AATCAATATACATATCAATT
*
110282302 AATCACATATTCATATCAATT
1 AATCA-ATATACATATCAATT
110282323 TCGTCACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (20 bp):
AATCAATATACATATCAATT
Found at i:110285283 original size:40 final size:40
Alignment explanation
Indices: 110285238--110285315 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
110285228 TTTGATACCT
110285238 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
1 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
110285278 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATA
1 GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATA
110285316 CTCTGTTCCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (40 bp):
GCCTTATCACAAAAGGCTTGAAACTGAGCTGAAGTATAAC
Found at i:110297160 original size:40 final size:40
Alignment explanation
Indices: 110297105--110297187 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
110297095 ACATCTTCAG
*
110297105 TTGCACGTACTTTACCCGGGA-AACTTATGTACATGGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATGTACATGAATTC
*
110297145 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTACATGAATTC
110297185 TTG
1 TTG
110297188 TGTGTATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTACATGAATTC
Found at i:110300100 original size:40 final size:40
Alignment explanation
Indices: 110300045--110300127 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
110300035 ACATCTTTAG
110300045 TTGCACGTACTTTACCCGGGA-AACTTATGTGCAT-AGATTC
1 TTGCACGTACTTTACCC-GGACAACTTATGTGCATGA-ATTC
110300085 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
1 TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
110300125 TTG
1 TTG
110300128 TGTGTATGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
39 3 0.07
40 37 0.90
41 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (40 bp):
TTGCACGTACTTTACCCGGACAACTTATGTGCATGAATTC
Found at i:110309566 original size:20 final size:21
Alignment explanation
Indices: 110309522--110309576 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
110309512 TTGTTCATAT
* * *
110309522 TATTATTTCTTTACAAAATTCA
1 TATTATTTATTTA-AAAAATAA
110309544 TATTATTT-TTTAAAAAATAA
1 TATTATTTATTTAAAAAATAA
110309564 TATT-TTTATTTAA
1 TATTATTTATTTAA
110309577 TATTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 15 0.50
21 4 0.13
22 8 0.27
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTATTTATTTAAAAAATAA
Found at i:110309589 original size:14 final size:13
Alignment explanation
Indices: 110309561--110309602 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
110309551 TTTTAAAAAA
*
110309561 TAATATTTTTATT
1 TAATATTTATATT
110309574 TAATATTTAATATT
1 TAATATTT-ATATT
110309588 TAATAATTT-TATT
1 TAAT-ATTTATATT
110309601 TA
1 TA
110309603 TTTTCTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 14 0.54
14 8 0.31
15 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TAATATTTATATT
Found at i:110313903 original size:23 final size:22
Alignment explanation
Indices: 110313877--110313920 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
110313867 ATTAGATATA
110313877 TAAATACA-AACTAGTTAAGCATG
1 TAAA-ACACAACTA-TTAAGCATG
*
110313900 TAAAACACAATTATTAAGCAT
1 TAAAACACAACTATTAAGCAT
110313921 TAATTAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (22 bp):
TAAAACACAACTATTAAGCATG
Found at i:110313926 original size:99 final size:99
Alignment explanation
Indices: 110313820--110314023 Score: 268
Period size: 100 Copynumber: 2.1 Consensus size: 99
110313810 ATAATTATCA
* * *
110313820 CTTAATTAATACTACAGTTATATAAATA-AGCTAAAACTAAATTTATAATTAGATATATAAATAC
1 CTTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATAC
* *
110313884 AAACTAGTTAAGCATGTAAAACACAATTATTAA-G
66 AAACTAGCTAAGCACGTAAAACACAATT-TTAATG
* * * * *
110313918 CATTAATTAGTATTTCAGTTATACAAAAACAACTAAAATTAAATTTATAATTAGATATATCAATA
1 C-TTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATA
* *
110313983 CAAACTAGCTGAGCACGTAAAACATAATTTTAATG
65 CAAACTAGCTAAGCACGTAAAACACAATTTTAATG
110314018 CTTAAT
1 CTTAAT
110314024 AATTATAAAG
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
98 1 0.01
99 31 0.34
100 59 0.65
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.33
Consensus pattern (99 bp):
CTTAATTAATACTACAGTTATACAAAAACAACTAAAACTAAATTTATAATTAGATATATAAATAC
AAACTAGCTAAGCACGTAAAACACAATTTTAATG
Found at i:110314689 original size:40 final size:40
Alignment explanation
Indices: 110314634--110314716 Score: 134
Period size: 40 Copynumber: 2.1 Consensus size: 40
110314624 TTCATGCACA
110314634 CAAGAATTCATGCACATAAGTTGT-CCGGGTAAAGTACGTG
1 CAAGAATTCATGCACATAAGTT-TCCCGGGTAAAGTACGTG
110314674 CAAGAA-TCTATGCACATAAGTTTCCCGGGTAAAGTACGTG
1 CAAGAATTC-ATGCACATAAGTTTCCCGGGTAAAGTACGTG
110314714 CAA
1 CAA
110314717 CTAAAGATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
39 3 0.07
40 38 0.93
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAGAATTCATGCACATAAGTTTCCCGGGTAAAGTACGTG
Found at i:110328127 original size:50 final size:50
Alignment explanation
Indices: 110328005--110328252 Score: 266
Period size: 50 Copynumber: 4.8 Consensus size: 50
110327995 GATAATAACA
* * * ** * *
110328005 TGCCAAAGACATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* * *
110328056 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
110328106 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
110328156 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* * *
110328211 ATGCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
110328253 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 94 0.55
51 32 0.19
53 2 0.01
54 1 0.01
55 27 0.16
56 13 0.08
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:110328184 original size:100 final size:104
Alignment explanation
Indices: 110328004--110328252 Score: 321
Period size: 100 Copynumber: 2.4 Consensus size: 104
110327994 TGATAATAAC
* ** * *
110328004 ATGCCAAAGACATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCAACGCCATG
* *
110328069 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
110328106 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCAACGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCAACGCCATG
110328169 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
110328211 ATGCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
110328253 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 48 0.37
101 35 0.27
103 3 0.02
104 1 0.01
105 28 0.22
106 13 0.10
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCAACGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:110328368 original size:13 final size:13
Alignment explanation
Indices: 110328347--110328378 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
110328337 GCTTGGATCA
*
110328347 TCATCAAATAAAT
1 TCATAAAATAAAT
110328360 TCATAAAATAAAT
1 TCATAAAATAAAT
110328373 TCATAA
1 TCATAA
110328379 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:110328624 original size:30 final size:30
Alignment explanation
Indices: 110328590--110328647 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
110328580 CCTCGACTCT
*
110328590 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
110328620 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
110328648 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:110331865 original size:5 final size:5
Alignment explanation
Indices: 110331851--110331901 Score: 54
Period size: 5 Copynumber: 10.4 Consensus size: 5
110331841 GTAACCCAAT
*
110331851 TTTTA TTTTTA TTTTA TTTTA GTTTA TTTTA TTTT- TTCTTA --TTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA
110331900 TT
1 TT
110331902 ATTTATTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.08
4 2 0.05
5 29 0.74
6 5 0.13
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:110331867 original size:11 final size:11
Alignment explanation
Indices: 110331851--110331908 Score: 57
Period size: 10 Copynumber: 5.2 Consensus size: 11
110331841 GTAACCCAAT
110331851 TTTTATTTTTA
1 TTTTATTTTTA
110331862 TTTTA-TTTTA
1 TTTTATTTTTA
*
110331872 GTTTA-TTTTA
1 TTTTATTTTTA
*
110331882 TTTTTTCTTATTA
1 TTTTAT-TT-TTA
110331895 TTTTATTATTTA
1 TTTTATT-TTTA
110331907 TT
1 TT
110331909 ATTTCCAGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 17 0.44
11 5 0.13
12 8 0.21
13 9 0.23
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:110331897 original size:18 final size:18
Alignment explanation
Indices: 110331852--110331911 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
110331842 TAACCCAATT
*
110331852 TTTATTTTTATTTTA-T-
1 TTTATTATTATTTTATTA
* *
110331868 TTTAGT-TTATTTTATTT
1 TTTATTATTATTTTATTA
*
110331885 TTTCTTATTATTTTATTA
1 TTTATTATTATTTTATTA
110331903 TTTATTATT
1 TTTATTATT
110331912 TCCAGATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 8 0.22
16 6 0.17
17 4 0.11
18 18 0.50
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTATTATTATTTTATTA
Found at i:110333439 original size:15 final size:15
Alignment explanation
Indices: 110333419--110333448 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
110333409 CATTTTATTT
*
110333419 ATATTAGGATAATTA
1 ATATTAAGATAATTA
110333434 ATATTAAGATAATTA
1 ATATTAAGATAATTA
110333449 TTAAGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:110338181 original size:25 final size:25
Alignment explanation
Indices: 110338143--110338190 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
110338133 TCAATAATGG
*
110338143 AGCACTTTGTATGGCTA-AAAATTTC
1 AGCACTTTGCATGGC-ACAAAATTTC
110338168 AGCACTTTGCATGGCACAAAATT
1 AGCACTTTGCATGGCACAAAATT
110338191 GCTCCACGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
AGCACTTTGCATGGCACAAAATTTC
Found at i:110342428 original size:12 final size:13
Alignment explanation
Indices: 110342411--110342447 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
110342401 GAACCGGACA
110342411 CGAACCGAA-CTC
1 CGAACCGAAGCTC
110342423 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
110342435 CGAACCGTAGCTC
1 CGAACCGAAGCTC
110342448 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:110342792 original size:25 final size:25
Alignment explanation
Indices: 110342754--110342801 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
110342744 TCAATAATGG
*
110342754 AGCACTTTGTATGGCTA-AAAATTTC
1 AGCACTTTGCATGGC-ACAAAATTTC
110342779 AGCACTTTGCATGGCACAAAATT
1 AGCACTTTGCATGGCACAAAATT
110342802 GCTCCACGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
AGCACTTTGCATGGCACAAAATTTC
Found at i:110349325 original size:13 final size:15
Alignment explanation
Indices: 110349291--110349341 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
110349281 TGAAAATGAT
110349291 ATAATAAGTATAATAA
1 ATAAT-AGTATAATAA
*
110349307 ATAATAGTGTAA-AA
1 ATAATAGTATAATAA
110349321 A-AATAGTATAATAA
1 ATAATAGTATAATAA
110349335 ATAATAG
1 ATAATAG
110349342 GAAAATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 11 0.35
16 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
ATAATAGTATAATAA
Found at i:110350830 original size:44 final size:44
Alignment explanation
Indices: 110350780--110350910 Score: 131
Period size: 44 Copynumber: 3.0 Consensus size: 44
110350770 GGCGATATTT
* *
110350780 GCTATCTTTGATCTGCTCTCTGTCAATACAGAGACGCCAAATCC
1 GCTATCTTTGATCTGCTCTCTATCAACACAGAGACGCCAAATCC
* * * * * * * *
110350824 GTTATCTTCGATCTGTTCCCTAT-AAGCATAGGGATGCCAAATCT
1 GCTATCTTTGATCTGCTCTCTATCAA-CACAGAGACGCCAAATCC
*
110350868 GCTAT-TTTCGATCTGCTCTCTACCAACACAGAGACGCCAAATC
1 GCTATCTTT-GATCTGCTCTCTATCAACACAGAGACGCCAAATC
110350911 TGTTTTAATC
Statistics
Matches: 66, Mismatches: 18, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
43 4 0.06
44 60 0.91
45 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (44 bp):
GCTATCTTTGATCTGCTCTCTATCAACACAGAGACGCCAAATCC
Found at i:110351421 original size:89 final size:89
Alignment explanation
Indices: 110351296--110351470 Score: 298
Period size: 89 Copynumber: 2.0 Consensus size: 89
110351286 AAGACTAATG
* *
110351296 ATTTTCAGCCTATTACCCTATTGCTTATAGGGTTAAGGCTTGGTGGCTTGAATCTGCTTCACCGC
1 ATTTTCAGCCTATTACCCTACTGCTTATAGGATTAAGGCTTGGTGGCTTGAATCTGCTTCACCGC
110351361 AACTTCAGGAAGGCAAGATTTGTA
66 AACTTCAGGAAGGCAAGATTTGTA
**
110351385 ATTTTCAGCCTATTACCCTACTGCTTA-AGTGATTAAGGCTTGGTGGCTTGAATCTGCTTCAGTG
1 ATTTTCAGCCTATTACCCTACTGCTTATAG-GATTAAGGCTTGGTGGCTTGAATCTGCTTCACCG
110351449 CAACTTCAGGAAGGCAAGATTT
65 CAACTTCAGGAAGGCAAGATTT
110351471 ACCGTCTTCA
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
88 2 0.02
89 79 0.98
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (89 bp):
ATTTTCAGCCTATTACCCTACTGCTTATAGGATTAAGGCTTGGTGGCTTGAATCTGCTTCACCGC
AACTTCAGGAAGGCAAGATTTGTA
Found at i:110351912 original size:138 final size:138
Alignment explanation
Indices: 110351524--110352378 Score: 1449
Period size: 138 Copynumber: 6.2 Consensus size: 138
110351514 CTGTTTTGAT
* *
110351524 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTTAATCTGTTCCACTTCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110351589 TTAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
110351654 ACTTCGAC
131 ACTTCGAC
* *
110351662 CTACTCTACTGCAACTTCAGATAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTTAATCTGTTCCACTGCAAC
* * * *
110351727 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTTAGGGAGATAAGACTTGT
65 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
110351792 AACTTCGAC
130 AACTTCGAC
* *
110351801 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110351866 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
110351931 ACTTCGAC
131 ACTTCGAC
* * *
110351939 CTACTCTACTTCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAAT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTTAATCTGTTCCACTGCAAC
* ** *
110352004 TTCAGGGAAATAAGATTTGCTATCTTCACTCTATTCTACTGCAACTTCAGGGAGATAAGACTTGT
65 TTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
110352069 AACTTCGAC
130 AACTTCGAC
* *
110352078 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTATTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110352143 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
110352208 ACTTCGAC
131 ACTTCGAC
* * * *
110352216 CTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
110352281 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
110352346 ACTTCGAC
131 ACTTCGAC
*
110352354 CTGCTCTACTGCAACTTCAGGGAGA
1 CTGCTCTACTGCAACTTCAGAGAGA
110352379 CATGGTTCAC
Statistics
Matches: 670, Mismatches: 45, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
138 413 0.62
139 257 0.38
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (138 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
ACTTCGAC
Found at i:110352018 original size:277 final size:277
Alignment explanation
Indices: 110351524--110352378 Score: 1496
Period size: 277 Copynumber: 3.1 Consensus size: 277
110351514 CTGTTTTGAT
* *
110351524 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTTAATCTGTTCCACTTCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110351589 TTAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
*
110351654 ACTTCGACCTACTCTACTGCAACTTCAGATAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAAAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* * *
110351719 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTTAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
110351784 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
* *
110351801 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCTGTTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110351866 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* *
110351931 ACTTCGACCTACTCTACTTCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAAAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* * *
110351996 ACTGCAATTTCAGGGAAATAAGATTTGCTATCTTCACTCTATTCTACTGCAACTTCAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
110352061 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
* *
110352078 CTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTATTCCACTGCAACT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
*
110352143 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTA
66 TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* *
110352208 ACTTCGACCTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAA-TTTAGCTTCAATCTGTTCC
131 ACTTCGACCTACTCTACTGCAACTTCAGAAAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
* *
110352272 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
196 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
110352337 AGACTTGTAACTTCGAC
261 AGACTTGTAACTTCGAC
*
110352354 CTGCTCTACTGCAACTTCAGGGAGA
1 CTGCTCTACTGCAACTTCAGAGAGA
110352379 CATGGTTCAC
Statistics
Matches: 549, Mismatches: 29, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
276 118 0.21
277 431 0.79
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (277 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACT
TCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA
ACTTCGACCTACTCTACTGCAACTTCAGAAAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCC
ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCTACTGCAACTTCAGGGAGATA
AGACTTGTAACTTCGAC
Found at i:110352297 original size:415 final size:415
Alignment explanation
Indices: 110351527--110352378 Score: 1465
Period size: 415 Copynumber: 2.1 Consensus size: 415
110351517 TTTTGATCTG
* *
110351527 CTCTACTGCAACTTCAGAGAGATAAGATTTGTAATTTAGCTTTAATCTGTTCCACTTCAACTTTA
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACTTTA
* *
110351592 GGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT
66 GGGAAATAAGATTTGCTATCTTCACTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT
* *
110351657 TCGACCTACTCTACTGCAACTTCAGATAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACT
131 TCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTATTCCACT
* * *
110351722 GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCTATTGCAACTTTAGGGAGATAAGA
196 GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAAGA
* * * *
110351787 CTTGTAACTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTCAATCT
261 CTTGTAACTTCGACCTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAATTTAGCTTCAATCT
*
110351852 GTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGG
326 GTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
110351917 AGATAAGACTTGTAACTTCGACCTA
391 AGATAAGACTTGTAACTTCGACCTA
*
110351942 CTCTACTTCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTTCCACTGCAA-TTT
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTTAATCTGTTCCACTGCAACTTT
* *
110352006 CAGGGAAATAAGATTTGCTATCTTCACTCTATTCTACTGCAACTTCAGGGAGATAAGACTTGTAA
65 -AGGGAAATAAGATTTGCTATCTTCACTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAA
* *
110352071 CTTCGACCTGCTCTATTGCAACTTCAGAGAGATAAGATCTGTAA-TTTAGCTTTAATCTATTCCA
129 CTTCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTATTCCA
**
110352135 CTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAA
194 CTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAA
110352200 GACTTGTAACTTCGACCTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAATTTAGCTTCAAT
259 GACTTGTAACTTCGACCTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAATTTAGCTTCAAT
110352265 CTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAG
324 CTGTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAG
*
110352330 GGAGATAAGACTTGTAACTTCGACCTG
389 GGAGATAAGACTTGTAACTTCGACCTA
*
110352357 CTCTACTGCAACTTCAGGGAGA
1 CTCTACTGCAACTTCAGAGAGA
110352379 CATGGTTCAC
Statistics
Matches: 411, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
415 285 0.69
416 126 0.31
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (415 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTTCCACTGCAACTTTA
GGGAAATAAGATTTGCTATCTTCACTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT
TCGACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTTAGCTTTAATCTATTCCACT
GCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTCCTCCACTGCAACTTCAGGGAGATAAGA
CTTGTAACTTCGACCTACTCTACTGCAACTTCAAAAAGATAAGATCTGTAATTTAGCTTCAATCT
GTTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGG
AGATAAGACTTGTAACTTCGACCTA
Found at i:110352799 original size:133 final size:133
Alignment explanation
Indices: 110352572--110353096 Score: 811
Period size: 133 Copynumber: 3.9 Consensus size: 133
110352562 AATCTTGGGT
* * * * *
110352572 CTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGACTTAAATCTACTTCGCTGCAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* *
110352637 AACCTAGA-TCTGCCGTCTTCGATTTGCTCCACTACAATCTCAAGGAAACAAGATCTACAATCTT
66 AACCTAGATTC-GCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTT
110352701 CAAC
130 CAAC
* * *
110352705 CTACTCCACTACAACTTTAGAGAGCTAGGATGGTGGCTTAAATCTGCTTCACTACAATATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* * * *
110352770 AGCCTAGA-TCTGCTGTCTTCGATCTGCTCCACTGCAATATCAGGGAAACAAGATCTACAATCTT
66 AACCTAGATTC-GCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTT
110352834 CAAC
130 CAAC
110352838 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* * *
110352903 AGCCTAGATTCGCTGTCTTCGATCTGCTCCACTGCAATCTCAGGGAAACAAGATCTACAATCTTC
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
*
110352968 AGC
131 AAC
* * *
110352971 ATACTCCACTACAACTTTAGGGAGCTAGGATGGTGGTTTAAATCTGCTTCGCTGCAACATCAGGA
1 CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
* *
110353036 AACCTAGATTCGCCGTCTTCGATCTGATCCACTACAATCTCGGGGAAACAAGATCTACAAT
66 AACCTAGATTCGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAAT
110353097 TTTTAGCTTG
Statistics
Matches: 366, Mismatches: 25, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
133 364 0.99
134 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (133 bp):
CTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACATCAGGA
AACCTAGATTCGCCGTCTTCGATCTGCTCCACTACAATCTCAGGGAAACAAGATCTACAATCTTC
AAC
Found at i:110352810 original size:45 final size:44
Alignment explanation
Indices: 110352745--110352946 Score: 142
Period size: 45 Copynumber: 4.5 Consensus size: 44
110352735 TGGTGGCTTA
* *
110352745 AATCTGCTTCACTACAATATCAGGAAGCCTAGATCTGCTGTCTTC
1 AATCTGCTCCACTGCAATATCAGGAAGCCTAGAT-TGCTGTCTTC
* * * * **
110352790 GATCTGCTCCACTGCAATATCAGGGAA-ACAAGATCTACAATCTTC
1 AATCTGCTCCACTGCAATATCA-GGAAGCCTAGAT-TGCTGTCTTC
* * * * * * * *
110352835 AACCTACTCCACTACAACT-TTAGGGAG-CTAGGA-TGGTGGCTTA
1 AATCTGCTCCACTGCAA-TATCAGGAAGCCTA-GATTGCTGTCTTC
* *
110352878 AATCTGCTTCACTGCAACATCAGGAAGCCTAGATTCGCTGTCTTC
1 AATCTGCTCCACTGCAATATCAGGAAGCCTAGATT-GCTGTCTTC
* *
110352923 GATCTGCTCCACTGCAATCTCAGG
1 AATCTGCTCCACTGCAATATCAGG
110352947 GAAACAAGAT
Statistics
Matches: 114, Mismatches: 35, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
43 25 0.22
44 9 0.08
45 75 0.66
46 5 0.04
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (44 bp):
AATCTGCTCCACTGCAATATCAGGAAGCCTAGATTGCTGTCTTC
Found at i:110358047 original size:26 final size:26
Alignment explanation
Indices: 110358010--110358067 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
110358000 TGATACAAAT
110358010 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
110358036 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
110358062 TGATAA
1 TGATAA
110358068 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:110367920 original size:24 final size:24
Alignment explanation
Indices: 110367846--110367921 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 24
110367836 TAAGTATAAT
*
110367846 AAATAATAGTGTAAAAAATAGTATAA
1 AAATAATAG-GAAAAAAATAGTA-AA
* **
110367872 TAAATAATAGGAAAATAATTTTAAA
1 -AAATAATAGGAAAAAAATAGTAAA
* *
110367897 AAATGATAGTAAAAAAATAGTAAA
1 AAATAATAGGAAAAAAATAGTAAA
110367921 A
1 A
110367922 TTAGATTAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 20 0.50
25 2 0.05
26 9 0.22
27 9 0.22
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (24 bp):
AAATAATAGGAAAAAAATAGTAAA
Found at i:110372745 original size:14 final size:14
Alignment explanation
Indices: 110372726--110372755 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
110372716 ATACTATTTT
110372726 AACAAAAGTCATTC
1 AACAAAAGTCATTC
110372740 AACAAAAGTCATTC
1 AACAAAAGTCATTC
110372754 AA
1 AA
110372756 GTTTAGTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.20, G:0.07, T:0.20
Consensus pattern (14 bp):
AACAAAAGTCATTC
Found at i:110375257 original size:10 final size:9
Alignment explanation
Indices: 110375231--110375261 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
110375221 TTGTGTGTTC
110375231 TTTATTTTA
1 TTTATTTTA
110375240 TTTATTTTA
1 TTTATTTTA
110375249 TTCTATTTTA
1 TT-TATTTTA
110375259 TTT
1 TTT
110375262 TTTCACAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:110379713 original size:10 final size:9
Alignment explanation
Indices: 110379687--110379717 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
110379677 TTGTGTGTTC
110379687 TTTATTTTA
1 TTTATTTTA
110379696 TTTATTTTA
1 TTTATTTTA
110379705 TTCTATTTTA
1 TT-TATTTTA
110379715 TTT
1 TTT
110379718 TTTCACAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:110381981 original size:13 final size:13
Alignment explanation
Indices: 110381963--110381987 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110381953 GATAAATAAA
110381963 AGTCCATTTATAC
1 AGTCCATTTATAC
110381976 AGTCCATTTATA
1 AGTCCATTTATA
110381988 GGTCCAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (13 bp):
AGTCCATTTATAC
Found at i:110383265 original size:16 final size:17
Alignment explanation
Indices: 110383244--110383278 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
110383234 AAAAATTGTT
110383244 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
110383260 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
110383277 TT
1 TT
110383279 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:110388503 original size:4 final size:4
Alignment explanation
Indices: 110388494--110388645 Score: 304
Period size: 4 Copynumber: 38.0 Consensus size: 4
110388484 TACGGATATA
110388494 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
110388542 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
110388590 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
110388638 GTAT GTAT
1 GTAT GTAT
110388646 ATGAGAAATG
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 148 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:110389786 original size:36 final size:36
Alignment explanation
Indices: 110389735--110389808 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
110389725 AGAAATTGTC
110389735 GATAGTTTGGGTTGAGATGCTCGTTCTTGGGTAAAG
1 GATAGTTTGGGTTGAGATGCTCGTTCTTGGGTAAAG
*
110389771 GATAGTTTGGTTTGAGATGCTCGTTCTTGGGTAAAG
1 GATAGTTTGGGTTGAGATGCTCGTTCTTGGGTAAAG
110389807 GA
1 GA
110389809 ATAATGAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.20, C:0.08, G:0.35, T:0.36
Consensus pattern (36 bp):
GATAGTTTGGGTTGAGATGCTCGTTCTTGGGTAAAG
Found at i:110390146 original size:20 final size:20
Alignment explanation
Indices: 110390121--110390163 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
110390111 CACATAAAAG
110390121 GAAAACGTAATGTCTATGAT
1 GAAAACGTAATGTCTATGAT
110390141 GAAAACGTAATGTCTATGAT
1 GAAAACGTAATGTCTATGAT
110390161 GAA
1 GAA
110390164 GCAGGAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
GAAAACGTAATGTCTATGAT
Found at i:110390863 original size:19 final size:19
Alignment explanation
Indices: 110390841--110390902 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
110390831 TCCAAGTTAG
110390841 AAATTCAAGTTGTCATTTA
1 AAATTCAAGTTGTCATTTA
* * *
110390860 AAA-TCAATTTGGACAGTTA
1 AAATTCAAGTT-GTCATTTA
*
110390879 GAAGTTCAAGTTGTCATTTA
1 -AAATTCAAGTTGTCATTTA
110390899 AAAT
1 AAAT
110390903 CAATTTGGAC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 6 0.19
19 12 0.38
20 8 0.25
21 6 0.19
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (19 bp):
AAATTCAAGTTGTCATTTA
Found at i:110390878 original size:39 final size:39
Alignment explanation
Indices: 110390835--110390912 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
110390825 TTCTTATCCA
110390835 AGTTAGAAATTCAAGTTGTCATTTAAAATCAATTTGGAC
1 AGTTAGAAATTCAAGTTGTCATTTAAAATCAATTTGGAC
*
110390874 AGTTAGAAGTTCAAGTTGTCATTTAAAATCAATTTGGAC
1 AGTTAGAAATTCAAGTTGTCATTTAAAATCAATTTGGAC
110390913 TGCCACGTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (39 bp):
AGTTAGAAATTCAAGTTGTCATTTAAAATCAATTTGGAC
Found at i:110391057 original size:31 final size:28
Alignment explanation
Indices: 110390989--110391057 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 28
110390979 ACAGTAACGT
*
110390989 AAGTGACTAAAATGTAGTATTTTAAACAT
1 AAGTGACTAAAATGTAG-ATTTTAAACAA
*
110391018 AAGCGACTAAAATGTA-ATTTGTGGCAAACAA
1 AAGTGACTAAAATGTAGATTT-T---AAACAA
110391049 AAGTGACTA
1 AAGTGACTA
110391058 TTTTTATAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 4 0.12
28 1 0.03
29 15 0.45
31 13 0.39
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (28 bp):
AAGTGACTAAAATGTAGATTTTAAACAA
Found at i:110396642 original size:153 final size:152
Alignment explanation
Indices: 110396379--110396897 Score: 792
Period size: 153 Copynumber: 3.4 Consensus size: 152
110396369 GATATTCCAC
* * * * *
110396379 GTGATATTTCTGGTCTATCTTGTTTGGAAAAACTTGATCTTAGTGGTAACAATTTCATCAGCATG
1 GTGATATTTCTGGTCTATCCTCTTTGG-ACATCTTGATCTTAGTGGTAACAATTTCATCAGCATA
* * *
110396444 CCTGCATCTCTTACTCGACTCTCGAAGCTTGGATATCTTGA-ATTGTCAAATTGCAACATGTGCA
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGCAAATCTT-ATATTGTCAAATTGCAACATGTGCA
110396508 CTCTTGGTGAAGCAGATACTCATA
129 CTCTTGGTGAAGCAGATACTCATA
*
110396532 GTGATATTTCTGGTCTATCCTCTTTGTGGCATCTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 GTGATATTTCTGGTCTATCCTCTTTG-GACATCTTGATCTTAGTGGTAACAATTTCATCAGCATA
110396597 CCTGCATCTCTTACTCGACTCTCAAAGCTTGCAAATCTTATATTGTCAAATTGCAACATGTGCAC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGCAAATCTTATATTGTCAAATTGCAACATGTGCAC
110396662 TCTTGGTGAAGCAGATACTCATA
130 TCTTGGTGAAGCAGATACTCATA
*
110396685 GTGATATTTCTGGTCTATCCTCTTTGGGTCATCTTGATCTTAGTGGTAACAATTTCATCAGCATA
1 GTGATATTTCTGGTCTATCCTCTTT-GGACATCTTGATCTTAGTGGTAACAATTTCATCAGCATA
**
110396750 CCTGCATCTCTTACTCGACTCTCAAAGCTT-CATGTTCTT-TACTTGTCAAATTGCAACATGTGC
65 CCTGCATCTCTTACTCGACTCTCAAAGCTTGCA-AATCTTATA-TTGTCAAATTGCAACATGTGC
*
110396813 ACTCTTGGTGAAGCAGATACTCATT
128 ACTCTTGGTGAAGCAGATACTCATA
* * * * *
110396838 GTGATCTTTCTGGTCTATCCTCTTTGATACGTCTTCATCTTAGTGGTAAGAATTTCATCA
1 GTGATATTTCTGGTCTATCCTCTTTG-GACATCTTGATCTTAGTGGTAACAATTTCATCA
110396898 CCATTCCTTT
Statistics
Matches: 341, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
152 6 0.02
153 333 0.98
154 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (152 bp):
GTGATATTTCTGGTCTATCCTCTTTGGACATCTTGATCTTAGTGGTAACAATTTCATCAGCATAC
CTGCATCTCTTACTCGACTCTCAAAGCTTGCAAATCTTATATTGTCAAATTGCAACATGTGCACT
CTTGGTGAAGCAGATACTCATA
Found at i:110398382 original size:105 final size:105
Alignment explanation
Indices: 110398263--110398471 Score: 348
Period size: 105 Copynumber: 2.0 Consensus size: 105
110398253 TTGGTTTCAA
* *
110398263 TTTTTTATTTTATTAAAATTTTATTT-TCATTATATATATTTACTTACATCTATATTTTATTTGT
1 TTTTTTATTCTATTAAAATTTTATTTCT-ATTATATATATTCACTTACATCTATATTTTATTTGT
* *
110398327 AGGTTGAAGACGAAGCAATTTGAAACAAAATTGTGAGACAC
65 AGGTTGAAGACAAAGCAACTTGAAACAAAATTGTGAGACAC
110398368 TTTTTTATTCTATTAAAATTTTATTTCTATTATATATATTCACTTACATCTATATTTTATTTGTA
1 TTTTTTATTCTATTAAAATTTTATTTCTATTATATATATTCACTTACATCTATATTTTATTTGTA
* *
110398433 TGTTGAAGGCAAAGCAACTTGAAACAAAATTGTGAGACA
66 GGTTGAAGACAAAGCAACTTGAAACAAAATTGTGAGACA
110398472 AAAATAGAGA
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
105 96 0.99
106 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (105 bp):
TTTTTTATTCTATTAAAATTTTATTTCTATTATATATATTCACTTACATCTATATTTTATTTGTA
GGTTGAAGACAAAGCAACTTGAAACAAAATTGTGAGACAC
Found at i:110399649 original size:40 final size:40
Alignment explanation
Indices: 110399560--110399650 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 40
110399550 GTGTGAGAGG
* * * * *
110399560 ACACGGCCGTGTGATCGACGAAGGCATGGTTGTACATAGC
1 ACACAGCCGTGCGATCGACCAAGGCATGGCTGTACACAGC
* * *
110399600 ACACGGCCGTGCGATCGACCAAGGCATGGCTGTGCGCAGC
1 ACACAGCCGTGCGATCGACCAAGGCATGGCTGTACACAGC
*
110399640 ATACAGCCGTG
1 ACACAGCCGTG
110399651 TGGTGGCTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.23, C:0.27, G:0.33, T:0.16
Consensus pattern (40 bp):
ACACAGCCGTGCGATCGACCAAGGCATGGCTGTACACAGC
Found at i:110401836 original size:15 final size:16
Alignment explanation
Indices: 110401816--110401845 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
110401806 TTTTGCTTCT
110401816 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
110401831 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
110401846 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:110404181 original size:38 final size:38
Alignment explanation
Indices: 110404106--110404182 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
110404096 GTATAGGTTA
* * *
110404106 TAAAAATTATGAATTGAGTTATAGAAATGTATTTTTAT
1 TAAAAATTATGAATTGAGTTATACAAATATATATTTAT
* *
110404144 TAAAAATTGTGAATTGAGTTATACATATATATATTTAT
1 TAAAAATTATGAATTGAGTTATACAAATATATATTTAT
110404182 T
1 T
110404183 TATTTATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.42, C:0.01, G:0.12, T:0.45
Consensus pattern (38 bp):
TAAAAATTATGAATTGAGTTATACAAATATATATTTAT
Found at i:110408163 original size:58 final size:55
Alignment explanation
Indices: 110408055--110408186 Score: 151
Period size: 58 Copynumber: 2.3 Consensus size: 55
110408045 TTAATTCATA
* *
110408055 TAATAATAATTATATTAAGAATGTTATTAAATTATATTTTTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTTTATTAAATTAT-TT
* * *
110408111 TAATAATAATTATGTTAA-AATATGGTTAAACTATTTATTATTTTTATTAAATTATTT
1 TAATAATAATTATATTAAGAATATGATTAAA-T-TATATT-TTTTTATTAAATTATTT
110408168 TCAATAATAATCT-TATTAA
1 T-AATAATAAT-TATATTAA
110408187 AATTTAATAA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
55 9 0.14
56 18 0.28
57 8 0.12
58 29 0.45
59 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (55 bp):
TAATAATAATTATATTAAGAATATGATTAAATTATATTTTTTTATTAAATTATTT
Found at i:110417190 original size:20 final size:20
Alignment explanation
Indices: 110417165--110417206 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
110417155 GAATTTCTTC
*
110417165 AACCTCGTTAACTTTTGCTA
1 AACCTCATTAACTTTTGCTA
110417185 AACCTCATTAACTTTTGCTA
1 AACCTCATTAACTTTTGCTA
110417205 AA
1 AA
110417207 GCAACAGCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (20 bp):
AACCTCATTAACTTTTGCTA
Found at i:110419980 original size:21 final size:20
Alignment explanation
Indices: 110419956--110420023 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
110419946 AACAACCTTA
110419956 AATGTCCAATTAAGCAACACT
1 AATGTCCAATTAAGC-ACACT
* *
110419977 AATGGT--AATTATAACCACGCT
1 AAT-GTCCAA-T-TAAGCACACT
110419998 AAATGTCCAATTAAGGCACACT
1 -AATGTCCAATTAA-GCACACT
110420020 AATG
1 AATG
110420024 GTAGTTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
20 2 0.06
21 17 0.47
22 15 0.42
23 2 0.06
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTCCAATTAAGCACACT
Found at i:110420001 original size:43 final size:43
Alignment explanation
Indices: 110419935--110420033 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
110419925 GGAAAGTTTG
110419935 ATGGTAGTTATAACAACCTTAAATGTCCAATTAA-GCAACACTA
1 ATGGTAGTTATAACAACCTTAAATGTCCAATTAAGGC-ACACTA
* *
110419978 ATGGTAATTATAACCACGC-TAAATGTCCAATTAAGGCACACTA
1 ATGGTAGTTATAACAAC-CTTAAATGTCCAATTAAGGCACACTA
110420021 ATGGTAGTTATAA
1 ATGGTAGTTATAA
110420034 GAGAGAGCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
43 48 0.94
44 3 0.06
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGGTAGTTATAACAACCTTAAATGTCCAATTAAGGCACACTA
Found at i:110420021 original size:22 final size:21
Alignment explanation
Indices: 110419954--110420021 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 21
110419944 ATAACAACCT
110419954 TAAATGTCCAATTAAGCAACAC
1 TAAATGTCCAATTAAGC-ACAC
* *
110419976 T-AATGGT--AATTATAACCACGC
1 TAAAT-GTCCAA-T-TAAGCACAC
110419997 TAAATGTCCAATTAAGGCACAC
1 TAAATGTCCAATTAA-GCACAC
110420019 TAA
1 TAA
110420022 TGGTAGTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
20 2 0.06
21 13 0.37
22 18 0.51
23 2 0.06
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.25
Consensus pattern (21 bp):
TAAATGTCCAATTAAGCACAC
Found at i:110422613 original size:3 final size:3
Alignment explanation
Indices: 110422591--110422632 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
110422581 TTTCCCCATT
* *
110422591 TTC TCC TTC TT- TTCC TTC TTC TTC TTC CTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC
110422633 ATCATCATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.88
4 2 0.06
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:110422637 original size:3 final size:3
Alignment explanation
Indices: 110422631--110422656 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
110422621 TTCTTCTTCT
110422631 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
110422657 TTCTTCCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:110431575 original size:60 final size:60
Alignment explanation
Indices: 110431501--110431616 Score: 223
Period size: 60 Copynumber: 1.9 Consensus size: 60
110431491 CACACCGGCC
*
110431501 GGATATCCTCCACCGGTCGCTACAACATATCCTTCACCTGGGGGATATCCTCCTCCCAAT
1 GGATACCCTCCACCGGTCGCTACAACATATCCTTCACCTGGGGGATATCCTCCTCCCAAT
110431561 GGATACCCTCCACCGGTCGCTACAACATATCCTTCACCTGGGGGATATCCTCCTCC
1 GGATACCCTCCACCGGTCGCTACAACATATCCTTCACCTGGGGGATATCCTCCTCC
110431617 TCCTCTTCCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.21, C:0.38, G:0.17, T:0.24
Consensus pattern (60 bp):
GGATACCCTCCACCGGTCGCTACAACATATCCTTCACCTGGGGGATATCCTCCTCCCAAT
Found at i:110433254 original size:133 final size:133
Alignment explanation
Indices: 110433011--110433277 Score: 507
Period size: 133 Copynumber: 2.0 Consensus size: 133
110433001 TGGATAAATA
110433011 AAATATATTAGGCTCTAATTTCACAAATTTCTTTAATTAAAACCTCTATATTTTCTTTTTCTACA
1 AAATATATTAGGCTCTAATTTCACAAATTTCTTTAATTAAAACCTCTATATTTTCTTTTTCTACA
*
110433076 CAGGAATGGTAAATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGC
66 CAGGAAAGGTAAATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGC
110433141 ATT
131 ATT
* *
110433144 AAATGTATTAGGCTCTAATTTCACAATTTTCTTTAATTAAAACCTCTATATTTTCTTTTTCTACA
1 AAATATATTAGGCTCTAATTTCACAAATTTCTTTAATTAAAACCTCTATATTTTCTTTTTCTACA
110433209 CAGGAAAGGTAAATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGC
66 CAGGAAAGGTAAATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGC
110433274 ATT
131 ATT
110433277 A
1 A
110433278 TTACTAATGT
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (133 bp):
AAATATATTAGGCTCTAATTTCACAAATTTCTTTAATTAAAACCTCTATATTTTCTTTTTCTACA
CAGGAAAGGTAAATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGC
ATT
Found at i:110433359 original size:74 final size:73
Alignment explanation
Indices: 110433220--110433366 Score: 222
Period size: 74 Copynumber: 2.0 Consensus size: 73
110433210 AGGAAAGGTA
* * * * *
110433220 AATAAAGAAAATTAGGTATTGAGCCGATTGAGTTTTAGCTCGATTGGTATGGGCATTATTACTAA
1 AATAAAGAAAAATAGGCATTGAGCCAATTGAGTTTTAGCTCGATTGGCATAGGCATTATTACTAA
110433285 TGTAGGAG
66 TGTAGGAG
* *
110433293 AATAAAGAAAAATAGGCATTGAGCCAATTGAGTCTTTAGCTCGATTGGCATAGGCATTGTTGCTA
1 AATAAAGAAAAATAGGCATTGAGCCAATTGAGT-TTTAGCTCGATTGGCATAGGCATTATTACTA
110433358 ATGTAGGAG
65 ATGTAGGAG
110433367 GACGTGGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
73 30 0.45
74 36 0.55
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (73 bp):
AATAAAGAAAAATAGGCATTGAGCCAATTGAGTTTTAGCTCGATTGGCATAGGCATTATTACTAA
TGTAGGAG
Found at i:110435071 original size:53 final size:51
Alignment explanation
Indices: 110434949--110435149 Score: 198
Period size: 52 Copynumber: 4.0 Consensus size: 51
110434939 CACATCACAC
* * * *
110434949 ACCGAAGCCATAGCCCTGCCATGGTCTTACACGG-A-AC--A-CACATCAT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAACACATATCACATCAT
* * * *
110434995 ACCGATGCCATATCCCAGATATGGTCTTATACGGACTCACATTATCACATCAC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGA-ACACA-TATCACATCAT
* **
110435048 ACCGATGCTATAGCCCAGCTATGGTCTTATACGGGAACACGA-ATCACATTGT
1 ACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAACAC-ATATCACATCAT
* *
110435100 ACCGATGCCATAGCCCGGCTATGGTCTTATACAGAAGCACATATCACATC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-CACATATCACATC
110435150 TTTTCCGTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
46 28 0.22
49 2 0.02
51 4 0.03
52 48 0.38
53 39 0.31
54 4 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (51 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAACACATATCACATCAT
Found at i:110435072 original size:99 final size:101
Alignment explanation
Indices: 110434946--110435149 Score: 236
Period size: 105 Copynumber: 2.0 Consensus size: 101
110434936 TCACACATCA
*
110434946 CACACCGAAGCCATAGCCCTGCCATGGTCTTACAC-GGAACAC-ACAT-CA-TACCGATGCCATA
1 CACACCGAAGCCATAGCCCAGCCATGGTCTTACACGGGAACACGA-ATACATTACCGATGCCATA
* * **
110435007 TCCCAGATATGGTCTTATACGGACTCACATTATCACAT
65 GCCCAGATATGGTCTTATACAGAAGCACA-TATCACAT
* * * *
110435045 CACACCGATGCTATAGCCCAGCTATGGTCTTATACGGGAACACGAATCACATTGTACCGATGCCA
1 CACACCGAAGCCATAGCCCAGCCATGGTCTTACACGGGAACACGAAT-ACA-T-TACCGATGCCA
* *
110435110 TAGCCCGGCTATGGTCTTATACAGAAGCACATATCACAT
63 TAGCCCAGATATGGTCTTATACAGAAGCACATATCACAT
110435149 C
1 C
110435150 TTTTCCGTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
99 30 0.34
100 9 0.10
101 1 0.01
102 2 0.02
104 9 0.10
105 36 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (101 bp):
CACACCGAAGCCATAGCCCAGCCATGGTCTTACACGGGAACACGAATACATTACCGATGCCATAG
CCCAGATATGGTCTTATACAGAAGCACATATCACAT
Found at i:110437631 original size:99 final size:100
Alignment explanation
Indices: 110437496--110437696 Score: 307
Period size: 99 Copynumber: 2.0 Consensus size: 100
110437486 AGGCACTCAA
* * *
110437496 ACAAACCAAATACAAGGAGCTAATATGCAAAGAAAGTGAGTGTAAGACCATGTTATATCTTGTAT
1 ACAAACCAAATACAAGGAGCTAATATGCAAAGAAAGTGAGTGTAAGACAATGCTATAGCTTGTAT
* * *
110437561 TACTCAACAAGGCTTATGTACAACAAGACTTTTAT
66 TACTCAACAAAGCTTATATAAAACAAGACTTTTAT
*
110437596 ACAAACCAAATACAA-GA-CTTAATATGCAAAGAAAGTGAGTGTAAGAGAATGCTATAGCTTGTA
1 ACAAACCAAATACAAGGAGC-TAATATGCAAAGAAAGTGAGTGTAAGACAATGCTATAGCTTGTA
*
110437659 TTACTCAACAAAGCTTATATAAAACAAGGCTTTTAT
65 TTACTCAACAAAGCTTATATAAAACAAGACTTTTAT
110437695 AC
1 AC
110437697 GATGATTCAT
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
98 1 0.01
99 76 0.83
100 15 0.16
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (100 bp):
ACAAACCAAATACAAGGAGCTAATATGCAAAGAAAGTGAGTGTAAGACAATGCTATAGCTTGTAT
TACTCAACAAAGCTTATATAAAACAAGACTTTTAT
Found at i:110439685 original size:16 final size:16
Alignment explanation
Indices: 110439664--110439695 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
110439654 ATAACTATTG
*
110439664 ACTTAAACTTAATCTA
1 ACTTAAACTCAATCTA
110439680 ACTTAAACTCAATCTA
1 ACTTAAACTCAATCTA
110439696 TGCCTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
ACTTAAACTCAATCTA
Found at i:110440677 original size:16 final size:16
Alignment explanation
Indices: 110440658--110440693 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
110440648 AAAAATTCCT
110440658 TTTTA-TAATACATTTA
1 TTTTACTAATA-ATTTA
110440674 TTTTACTAATAATTTA
1 TTTTACTAATAATTTA
110440690 TTTT
1 TTTT
110440694 CTTTTCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTACTAATAATTTA
Found at i:110447814 original size:46 final size:46
Alignment explanation
Indices: 110447738--110448235 Score: 750
Period size: 46 Copynumber: 10.8 Consensus size: 46
110447728 TGATGTCATA
* * * * *
110447738 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCAGGTTGCCATG
* *** *
110447784 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGTTGCCATG
*
110447831 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
110447877 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
110447923 GTATCTTTCAACCATGGTCTTATTCATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
110447969 GTATCTTTCAACCATGGTCTTA-TACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACT-CATTTCATATCAGGTTGCCATG
110448015 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* * *
110448061 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGTCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
110448107 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
110448153 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
110448199 GTATCTTTCAACCATGGTCTTACAT-ATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTAC-TCATTTCATATCAG
110448236 AGAGCACACT
Statistics
Matches: 424, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
45 1 0.00
46 383 0.90
47 40 0.09
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:110449865 original size:2 final size:2
Alignment explanation
Indices: 110449858--110449900 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
110449848 ATATTAAAAG
*
110449858 AT AT AT AT AT AT AT AT AT AT AT A- AT GT AT AT AT A- AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110449897 AT AT
1 AT AT
110449901 TAAAATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:110450467 original size:39 final size:40
Alignment explanation
Indices: 110450424--110450576 Score: 265
Period size: 40 Copynumber: 3.9 Consensus size: 40
110450414 GATTCCACTT
* *
110450424 CCCCATGCTACTTTG-TTTTATTATTAATTAAAACTATTC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATTC
110450463 CCCCATACTATTTTG-TTTTATTATTAATTAAAACTATTC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATTC
*
110450502 CCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATTC
110450542 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
110450577 CATACTTTAT
Statistics
Matches: 110, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 52 0.47
40 58 0.53
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (40 bp):
CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATTC
Found at i:110450531 original size:79 final size:79
Alignment explanation
Indices: 110450424--110450576 Score: 263
Period size: 79 Copynumber: 1.9 Consensus size: 79
110450414 GATTCCACTT
* *
110450424 CCCCATGCTACTTTGTTTTATTATTAATTAAAACTATTCCCCCATACTATTTTG-TTTTATTATT
1 CCCCATACTACTTTGTTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGTTTTTATTATT
110450488 AATTAAAACTATTC
66 AATTAAAACTATTC
*
110450502 CCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGTTTTTATTAT
1 CCCCATACTACTTTG-TTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGTTTTTATTAT
110450567 TAATTAAAAC
65 TAATTAAAAC
110450577 CATACTTTAT
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 13 0.19
79 38 0.54
80 19 0.27
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (79 bp):
CCCCATACTACTTTGTTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGTTTTTATTATT
AATTAAAACTATTC
Found at i:110453733 original size:14 final size:14
Alignment explanation
Indices: 110453696--110453733 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
110453686 AGAGTTATAC
110453696 AATAACAACAAAAT
1 AATAACAACAAAAT
**
110453710 AATAGTAACAAAAT
1 AATAACAACAAAAT
110453724 AATAACAACA
1 AATAACAACA
110453734 TAATTGTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.68, C:0.13, G:0.03, T:0.16
Consensus pattern (14 bp):
AATAACAACAAAAT
Found at i:110454778 original size:7 final size:7
Alignment explanation
Indices: 110454766--110454793 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
110454756 TATAATATTC
110454766 AAATTTA
1 AAATTTA
110454773 AAATTTA
1 AAATTTA
110454780 AAATTTA
1 AAATTTA
110454787 AAATTTA
1 AAATTTA
110454794 TACTTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATTTA
Found at i:110456763 original size:6 final size:6
Alignment explanation
Indices: 110456752--110456791 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
110456742 ACACCATTCT
110456752 TATATC TATATC TATATC TATATC TATATC TATATC TATA
1 TATATC TATATC TATATC TATATC TATATC TATATC TATA
110456792 CCGGTTCCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (6 bp):
TATATC
Done.