Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 350 of 356
Found at i:111945387 original size:38 final size:36
Alignment explanation
Indices: 111945314--111945387 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
111945304 TTGGGTTAGG
* *
111945314 CCAAAACGACGTCGTTTTGGGGCTTAAGTATGGCCC
1 CCAAAACGACGTCATTTTGGGGCTTAAATATGGCCC
111945350 CCAAAACGACGTCATTTTGGAGGGCTATAAATA-GGCCC
1 CCAAAACGACGTCATTTT-G-GGGCT-TAAATATGGCCC
111945388 AATTTCAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 17 0.52
37 1 0.03
38 10 0.30
39 5 0.15
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (36 bp):
CCAAAACGACGTCATTTTGGGGCTTAAATATGGCCC
Found at i:111947476 original size:158 final size:158
Alignment explanation
Indices: 111947188--111947505 Score: 600
Period size: 158 Copynumber: 2.0 Consensus size: 158
111947178 TTTTAGAGGG
*
111947188 AGGGTGATTCGATTTAAAATATAAGAGCGAGGTTACTATTTGGTTAGTGAATTTAGTGTGTGAGA
1 AGGGTGATTCGATTTAAAATATAAGAGCAAGGTTACTATTTGGTTAGTGAATTTAGTGTGTGAGA
* *
111947253 CTTATATCAGAGCTTGTACTTATTGAAGTATAATGGATTAACTATCAGGGCAAGGCCTCGCAGAC
66 CTTATATCAGAGCTTGTACTTATTGAAGTATAATGGATAAACTATCAGGGCAAGGCCTCACAGAC
111947318 TTAGGAAATTTCCGAACTGCGTGAACAA
131 TTAGGAAATTTCCGAACTGCGTGAACAA
111947346 AGGGTGATTCGATTTAAAATATAAGAGCAAGGTTACTATTTGGTTAGTGAATTTAGTGTGTGAGA
1 AGGGTGATTCGATTTAAAATATAAGAGCAAGGTTACTATTTGGTTAGTGAATTTAGTGTGTGAGA
*
111947411 CTTATATCAGAGCTTGTACTTATTGAAGTATAGTGGATAAACTATCAGGGCAAGGCCTCACAGAC
66 CTTATATCAGAGCTTGTACTTATTGAAGTATAATGGATAAACTATCAGGGCAAGGCCTCACAGAC
111947476 TTAGGAAATTTCCGAACTGCGTGAACAA
131 TTAGGAAATTTCCGAACTGCGTGAACAA
111947504 AG
1 AG
111947506 TTTTTGGTAT
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
158 156 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (158 bp):
AGGGTGATTCGATTTAAAATATAAGAGCAAGGTTACTATTTGGTTAGTGAATTTAGTGTGTGAGA
CTTATATCAGAGCTTGTACTTATTGAAGTATAATGGATAAACTATCAGGGCAAGGCCTCACAGAC
TTAGGAAATTTCCGAACTGCGTGAACAA
Found at i:111956291 original size:47 final size:47
Alignment explanation
Indices: 111956228--111956493 Score: 388
Period size: 47 Copynumber: 5.7 Consensus size: 47
111956218 CCCTTCGGGA
* * *
111956228 CTTATCACATTTATACACTTTCACATCCATCACATTGACCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
111956275 CTTATCACATACATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
111956322 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
111956369 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** * *
111956416 CTTATCACATATATACACTTTCACATTCATCATGTTGGCCACTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
111956463 CTTATCACATATATATATTTTCACATTCATC
1 CTTATCACATATATACACTTTCACATTCATC
111956494 GCATAAAATC
Statistics
Matches: 202, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 202 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:111964590 original size:4 final size:4
Alignment explanation
Indices: 111964581--111964610 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
111964571 TGAATGGCAT
111964581 CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CA
111964611 CTGTTAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:111969669 original size:21 final size:22
Alignment explanation
Indices: 111969640--111969680 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
111969630 AAATGGGGTC
* *
111969640 TTAACTTTTTTTTCTATTTTAT
1 TTAACTTTTTTCTATATTTTAT
111969662 TTAA-TTTTTTCTATATTTT
1 TTAACTTTTTTCTATATTTT
111969681 CAAATAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (22 bp):
TTAACTTTTTTCTATATTTTAT
Found at i:111971304 original size:26 final size:25
Alignment explanation
Indices: 111971259--111971310 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
111971249 AGTTGTAGAG
*
111971259 AGAAAATTTTTTGAAATTTTTATTTT
1 AGAAAATTTTTAGAAATTTTT-TTTT
**
111971285 AGAAAATTTTTAGAGTTTTTTTTTT
1 AGAAAATTTTTAGAAATTTTTTTTT
111971310 A
1 A
111971311 TAACTTGACC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.58
Consensus pattern (25 bp):
AGAAAATTTTTAGAAATTTTTTTTT
Found at i:111978153 original size:21 final size:20
Alignment explanation
Indices: 111978122--111978162 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
111978112 GTTCAATAAG
*
111978122 TTTTTATAATTAATTTTTAA
1 TTTTTATAATTAATTCTTAA
*
111978142 TTTTTATAAATTTATTCTTAA
1 TTTTTAT-AATTAATTCTTAA
111978163 ATCAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTATAATTAATTCTTAA
Found at i:111978182 original size:18 final size:19
Alignment explanation
Indices: 111978151--111978194 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
111978141 ATTTTTATAA
* *
111978151 ATTTATTCTTAAATCAAAT-
1 ATTT-TTCTGAAATAAAATC
111978170 ATTTTTCTGAAATAAAATC
1 ATTTTTCTGAAATAAAATC
111978189 ATTTTT
1 ATTTTT
111978195 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTTTTCTGAAATAAAATC
Found at i:111979365 original size:20 final size:20
Alignment explanation
Indices: 111979340--111979480 Score: 92
Period size: 20 Copynumber: 7.0 Consensus size: 20
111979330 GTACTAAAGT
111979340 TTATGAGGAAATATCAAAAA
1 TTATGAGGAAATATCAAAAA
* * *
111979360 TTATGAGTAAGTACCAAAAA
1 TTATGAGGAAATATCAAAAA
* * *
111979380 ATACGAGGAAATATAAAAAAA
1 TTATGAGGAAATAT-CAAAAA
111979401 TCT-TGA--AAAGTATCAAAAAA
1 T-TATGAGGAAA-TATC-AAAAA
* * *
111979421 ATATGAGGAAATACCGAAAA
1 TTATGAGGAAATATCAAAAA
* *
111979441 TTATAAGGAAGA-ATAAAAAA
1 TTATGAGGAA-ATATCAAAAA
* *
111979461 TTAGGAGGAAATAGCAAAAA
1 TTATGAGGAAATATCAAAAA
111979481 CAATGAGTGA
Statistics
Matches: 88, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
19 5 0.06
20 68 0.77
21 11 0.12
22 4 0.05
ACGTcount: A:0.57, C:0.06, G:0.16, T:0.20
Consensus pattern (20 bp):
TTATGAGGAAATATCAAAAA
Found at i:111979388 original size:40 final size:40
Alignment explanation
Indices: 111979344--111979503 Score: 112
Period size: 40 Copynumber: 4.0 Consensus size: 40
111979334 TAAAGTTTAT
111979344 GAGGAAATATCAAAAATTATGAGTAAGTACCAAAAAATAC
1 GAGGAAATATCAAAAATTATGAGTAAGTACCAAAAAATAC
* * * *
111979384 GAGGAAATATAAAAAAATCT-TGA-AAAGTATCAAAAAAATAT
1 GAGGAAATAT-CAAAAAT-TATGAGTAAGTA-CCAAAAAATAC
* * * * ** *
111979425 GAGGAAATACCGAAAATTATAAGGAAG-AATAAAAAATTAG
1 GAGGAAATATCAAAAATTATGAGTAAGTACCAAAAAA-TAC
* **
111979465 GAGGAAATAGCAAAAACAATGAGTGAA-TACCAAATAAAT
1 GAGGAAATATCAAAAATTATGAGT-AAGTACCAAA-AAAT
111979504 CCGATGGAGT
Statistics
Matches: 91, Mismatches: 20, Indels: 17
0.71 0.16 0.13
Matches are distributed among these distances:
39 7 0.08
40 43 0.47
41 37 0.41
42 4 0.04
ACGTcount: A:0.57, C:0.07, G:0.16, T:0.19
Consensus pattern (40 bp):
GAGGAAATATCAAAAATTATGAGTAAGTACCAAAAAATAC
Found at i:111979890 original size:19 final size:19
Alignment explanation
Indices: 111979868--111979905 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
111979858 CAACAACTTA
* *
111979868 TGAGGAAATATAAAAAAAT
1 TGAGGAAACACAAAAAAAT
111979887 TGAGGAAACACAAAAAAAT
1 TGAGGAAACACAAAAAAAT
111979906 ATGAAGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.05, G:0.16, T:0.16
Consensus pattern (19 bp):
TGAGGAAACACAAAAAAAT
Found at i:111979913 original size:21 final size:20
Alignment explanation
Indices: 111979841--111979914 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
111979831 AAAATGACCT
* *
111979841 AAAAATATGAGGGAATACAA
1 AAAAATATGAGGAAACACAA
* ** * *
111979861 CAACTTATGAGGAAATATAA
1 AAAAATATGAGGAAACACAA
111979881 AAAAAT-TGAGGAAACACAA
1 AAAAATATGAGGAAACACAA
111979900 AAAAATATGAAGGAA
1 AAAAATATG-AGGAA
111979915 TACCAATAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
19 17 0.40
20 20 0.48
21 5 0.12
ACGTcount: A:0.59, C:0.07, G:0.18, T:0.16
Consensus pattern (20 bp):
AAAAATATGAGGAAACACAA
Found at i:111981748 original size:29 final size:28
Alignment explanation
Indices: 111981682--111981761 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 28
111981672 AATCTTAAAA
111981682 TTATACATGAACTTTGATTCAATGTGCAAT
1 TTATACATGAACTTTGATT--ATGTGCAAT
*
111981712 TTGATACATGAACTTTGATT-TGATGCAGT
1 TT-ATACATGAACTTTGATTATG-TGCAAT
111981741 TATATACATGAATCTTTGATT
1 T-TATACATGAA-CTTTGATT
111981762 GTGGTTCAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
28 2 0.04
29 15 0.33
30 11 0.24
31 17 0.38
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.42
Consensus pattern (28 bp):
TTATACATGAACTTTGATTATGTGCAAT
Found at i:111993849 original size:23 final size:23
Alignment explanation
Indices: 111993819--111993905 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
111993809 GCTTTATCGA
* *
111993819 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
111993842 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
111993863 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
111993885 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
111993906 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:111997237 original size:3 final size:3
Alignment explanation
Indices: 111997223--111997272 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
111997213 ACACTAGTAC
* * * *
111997223 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
111997269 ATA A
1 ATA A
111997273 GGATATTTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 33 0.89
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:111998824 original size:45 final size:45
Alignment explanation
Indices: 111998775--111998924 Score: 133
Period size: 45 Copynumber: 3.2 Consensus size: 45
111998765 TCCGATCTAT
111998775 TCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATGTAC
1 TCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATGTAC
* * * * * * *
111998820 TCCACTGT--AGTCACAGGGAGGTAGAATCTGCCATCTTTGATCTTCAATCTAT
1 TCCACTGTCAAAT-GCAGGGAGATAGAGT-T---ATC----AGCTTCAATGTAC
*
111998872 TCCACTGTCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTAC
1 TCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATGTAC
111998917 TCCACTGT
1 TCCACTGT
111998925 AGTCAGGGAG
Statistics
Matches: 79, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
43 2 0.03
44 12 0.15
45 26 0.33
48 3 0.04
49 3 0.04
52 19 0.24
53 12 0.15
54 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (45 bp):
TCCACTGTCAAATGCAGGGAGATAGAGTTATCAGCTTCAATGTAC
Found at i:111999042 original size:44 final size:43
Alignment explanation
Indices: 111998975--111999531 Score: 500
Period size: 44 Copynumber: 12.7 Consensus size: 43
111998965 TGTCAACTAC
* * * * *
111998975 AGGAAGGCAAGATCTACAATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* * * *
111999019 ATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
111999064 -GGAAAGACAAGATCTGC-ATCGTCGATCCACTTCCTACCAATAT
1 AGG-AAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * * *
111999107 AGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-CACCAATAT
* *
111999151 ATGAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCATCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* * * *
111999195 GGGAAGACAAGATCTGC-ATCTTGGATCCACTTCCTATCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * *
111999238 AGGAAGATAGGACCTGCTATCTTCGATCTACTT-CATGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCCA--CCAATAT
* *
111999282 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
111999327 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * * * *
111999370 AGGAAGATAGGATCTGTTATCTTTGATCTACTT-CATGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCCA--CCAATAT
* * *
111999414 ATGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTT--CCACCAATAT
* *
111999459 GGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCC-ACCAATAT
* * *
111999502 AGGAAGATAGGATCTGATATCTTCGATCTA
1 AGGAAGACAAGATCTGCTATCTTCGATCTA
111999532 TAAAATCAAT
Statistics
Matches: 412, Mismatches: 76, Indels: 50
0.77 0.14 0.09
Matches are distributed among these distances:
42 10 0.02
43 98 0.24
44 236 0.57
45 63 0.15
46 1 0.00
47 4 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCCACCAATAT
Found at i:111999148 original size:132 final size:132
Alignment explanation
Indices: 111998993--111999531 Score: 927
Period size: 132 Copynumber: 4.1 Consensus size: 132
111998983 AAGATCTACA
*
111998993 ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * *
111999058 CAGTATGGAAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
111999123 CT
131 CT
* * *
111999125 ACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCAT
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * *
111999189 CAATATGGGAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
111999254 CT
131 CT
*
111999256 ATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
111999321 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
*
111999386 TT
131 CT
* * *
111999388 ATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
111999453 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
66 CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
*
111999518 AT
131 CT
111999520 ATCTTCGATCTA
1 ATCTTCGATCTA
111999532 TAAAATCAAT
Statistics
Matches: 384, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
131 121 0.32
132 263 0.68
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
ATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
CAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTG
CT
Found at i:112000376 original size:1 final size:1
Alignment explanation
Indices: 112000370--112000402 Score: 57
Period size: 1 Copynumber: 33.0 Consensus size: 1
112000360 GGCCTCTCCC
*
112000370 TTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
112000403 AGGCAAAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:112011531 original size:3 final size:3
Alignment explanation
Indices: 112011523--112011549 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
112011513 AAGCATAAAC
112011523 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
112011550 CATTGGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:112011687 original size:3 final size:3
Alignment explanation
Indices: 112011673--112011722 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
112011663 ACACTAGCAC
* * * *
112011673 ATA ATT ATA ATA ATA GTA ATA CTA ATA ATA CTA ATA AT- ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
112011719 ATA A
1 ATA A
112011723 GGTATTTGAT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 33 0.89
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:112017848 original size:25 final size:23
Alignment explanation
Indices: 112017810--112017862 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
112017800 AAATATAAGA
*
112017810 AATAATAGAATAATGGCAA-TAAT
1 AATAATAGAATAATAG-AATTAAT
112017833 AATAAGTAGTAATAATAGAATTAAT
1 AATAA-TAG-AATAATAGAATTAAT
112017858 AATAA
1 AATAA
112017863 AAATAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 5 0.19
25 16 0.62
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.28
Consensus pattern (23 bp):
AATAATAGAATAATAGAATTAAT
Found at i:112021727 original size:17 final size:17
Alignment explanation
Indices: 112021705--112021737 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
112021695 AAAAATCCTA
112021705 AATTTTCTATTTTGATG
1 AATTTTCTATTTTGATG
112021722 AATTTTCTATTTTGAT
1 AATTTTCTATTTTGAT
112021738 CGATGAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.61
Consensus pattern (17 bp):
AATTTTCTATTTTGATG
Found at i:112026566 original size:60 final size:59
Alignment explanation
Indices: 112026486--112026619 Score: 142
Period size: 60 Copynumber: 2.2 Consensus size: 59
112026476 AAAAATATAT
* * * * * * *
112026486 ATTTTTAAATTTTTACAATTAGGACTAAATTGATAGATTTTGTAAATATTGAGAGTTAA
1 ATTTTTAATTTTTTACAATTAGAACTAAAATGACAAATTTTGTAAACATTGAGAGCTAA
* * * *
112026545 ATTTATTAATTTTTTAGAATTATAACTAAAATGGCAAATTTTGTAAACATTGAGGGCTAA
1 ATTT-TTAATTTTTTACAATTAGAACTAAAATGACAAATTTTGTAAACATTGAGAGCTAA
*
112026605 ATTTGTTCATTTTTT
1 ATTT-TTAATTTTTT
112026620 TATATTTAGA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
59 4 0.07
60 57 0.93
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.46
Consensus pattern (59 bp):
ATTTTTAATTTTTTACAATTAGAACTAAAATGACAAATTTTGTAAACATTGAGAGCTAA
Found at i:112042432 original size:62 final size:62
Alignment explanation
Indices: 112042366--112042549 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
112042356 CACGTATCTC
*
112042366 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
112042428 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
112042490 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
112042550 TCGAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:112043807 original size:23 final size:22
Alignment explanation
Indices: 112043780--112043835 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
112043770 TTAGTGGAGG
112043780 CCAAAAAAAAGAACAAATA-AAAA
1 CCAAAAAAAA-AACAAA-ACAAAA
*
112043803 CCAAATAAAAAACAAAAGCAAAA
1 CCAAAAAAAAAACAAAA-CAAAA
*
112043826 ACAAAAAAAA
1 CCAAAAAAAA
112043836 CTCTACCAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.04
22 6 0.21
23 21 0.75
ACGTcount: A:0.79, C:0.14, G:0.04, T:0.04
Consensus pattern (22 bp):
CCAAAAAAAAAACAAAACAAAA
Found at i:112043809 original size:11 final size:11
Alignment explanation
Indices: 112043781--112043835 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
112043771 TAGTGGAGGC
*
112043781 CAAAAAAAAGAA
1 CAAATAAAA-AA
*
112043793 CAAATAAAAAC
1 CAAATAAAAAA
112043804 CAAATAAAAAA
1 CAAATAAAAAA
112043815 CAAA-AGCAAAAA
1 CAAATA--AAAAA
112043827 CAAA-AAAAA
1 CAAATAAAAA
112043836 CTCTACCAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.13
11 15 0.39
12 18 0.47
ACGTcount: A:0.80, C:0.13, G:0.04, T:0.04
Consensus pattern (11 bp):
CAAATAAAAAA
Found at i:112045430 original size:132 final size:132
Alignment explanation
Indices: 112045196--112046118 Score: 1445
Period size: 132 Copynumber: 7.0 Consensus size: 132
112045186 ATAGGTCCTA
* * * * * *** * *
112045196 TCTTCCTATATTGGTAG-GAAGTGGATCAAAGATA-CAGATCTTGTCTTCCCATATTGGTGGCGA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGA
112045259 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
65 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATC
*
112045324 TTA
130 TTG
* *
112045327 TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
* *
112045392 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
112045457 TG
131 TG
*
112045459 TCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
112045524 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
112045589 TG
131 TG
* *
112045591 TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
* *
112045656 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATACAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
112045721 TG
131 TG
*
112045723 TCTTCCCATATTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
112045788 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
112045853 TG
131 TG
* *
112045855 TCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
** * *
112045920 GTAGATCGAAGGTAGCAGATCCGGTCTTCCTATATTGGTAGGAAGTGGATTGACGATGCAGATCT
66 GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
112045985 TG
131 TG
* *
112045987 TCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTTGGCGTGA
1 TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGCGTGA
* * * * * * * **
112046052 AGTAGATCGAAGATTGTAGATCTTACCTTCCTGTATTTGGCAGCGAAGAAGATCGAAGATGGCAG
65 AGTAGATCGAAGGTAGCAGATCCTATCTTCCTATA-TTGGTAG-GAAGTGGATCGAAGAT-GCAG
112046117 AT
127 AT
112046119 TTTACCTCCC
Statistics
Matches: 732, Mismatches: 54, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
131 15 0.02
132 637 0.87
133 56 0.08
134 6 0.01
135 12 0.02
136 6 0.01
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
TCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
GTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCT
TG
Found at i:112046124 original size:46 final size:46
Alignment explanation
Indices: 112046003--112046533 Score: 250
Period size: 46 Copynumber: 11.8 Consensus size: 46
112045993 CATACTGGTG
** * * * *
112046003 GCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTTGGC-
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * *
112046048 GTGAAGTAGATCGAAGATTGTAGATCTTACCTTCCTGTATTTGGCA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * *
112046094 GCGAAGAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * ** ** * *
112046137 GTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * * *
112046182 GTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
1 G-CGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * *
112046228 GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * ** ** * *
112046271 GTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * * *
112046316 GTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
1 G-CGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * *
112046362 GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * ** ** * *
112046405 GTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCA
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
* * * * * *
112046450 GTGGAA-TAGATTGAAGACT-GCAGATCTTGCCTTCCTGTATTTAGCA
1 G-CGAAGTAGATCGAAGA-TGGCAGATTTTACCTCCCTGTATTTGGCA
* * *
112046496 ACGAAGCAGATCGAAGATGGCAGGTTTTACCTCCCTGT
1 GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGT
112046534 GACTACAGTG
Statistics
Matches: 343, Mismatches: 122, Indels: 41
0.68 0.24 0.08
Matches are distributed among these distances:
42 36 0.10
43 46 0.13
44 6 0.02
45 91 0.27
46 164 0.48
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (46 bp):
GCGAAGTAGATCGAAGATGGCAGATTTTACCTCCCTGTATTTGGCA
Found at i:112046198 original size:88 final size:91
Alignment explanation
Indices: 112046081--112046489 Score: 220
Period size: 88 Copynumber: 4.6 Consensus size: 91
112046071 ATCTTACCTT
* * *
112046081 CCTGTATTTGGCAG-CGAAGAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGA
112046142 GTACATTGAAGCCGATAATTCTATCTC
65 GTACATTGAAGCCGATAATTCTATCTC
* * * * * * * *
112046169 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAG
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
* * ** ** ** * *
112046234 CAGATCAAAGATGGCAGATTTTACCTC
66 TACATTGAAGCCGATA-ATTCTATCTC
* * * * ** ** * * * * *
112046261 CCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ATTCTATCTCCCTGTATTTGGCAGTGGAA
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
* ** * *
112046322 TAGATTGAAGATTGCA-GA-TCT-TGCCTT
66 TACATTGAAG-CCG-ATAATTCTAT--CTC
* * **
112046349 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGA
112046410 GTACATTGAAGCCGATAATTCTATCTC
65 GTACATTGAAGCCGATAATTCTATCTC
* * *
112046437 CCTGTATTTGGCAGTGGAATAGATTGAAGACT-GCAGATCTTGCCTTCCTGTAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGA-TGGCAGATTTTACCTCCCTGTAT
112046490 TTAGCAACGA
Statistics
Matches: 224, Mismatches: 76, Indels: 40
0.66 0.22 0.12
Matches are distributed among these distances:
87 3 0.01
88 115 0.51
89 48 0.21
90 7 0.03
91 27 0.12
92 24 0.11
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (91 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGTATCTGACAGTGGAG
TACATTGAAGCCGATAATTCTATCTC
Found at i:112046294 original size:134 final size:134
Alignment explanation
Indices: 112046038--112046613 Score: 976
Period size: 134 Copynumber: 4.3 Consensus size: 134
112046028 CTTATCTTCA
* * * *
112046038 TGTATTTGGC-GT-GAAGTAGATCGAAGATTGTAGATCTTACCTTCCTGTATTTGGCAGCGAAGA
1 TGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
*
112046101 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
65 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
112046166 CTCCC
130 CTCCC
112046171 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
112046236 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
112046301 TCCC
131 TCCC
112046305 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
112046370 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
66 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
112046435 TCCC
131 TCCC
* * *
112046439 TGTATTTGGCAGTGGAATAGATTGAAGACTGCAGATCTTGCCTTCCTGTATTTAGCAACGAAGCA
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
* * * *
112046504 GATCGAAGATGGCAGGTTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCTGATAACTCTA
66 GATCAAAGATGGCAGATTTTACCTCCC--TGACTACAGTGGAGTACATTGAAGCCGATAATTCTA
112046569 TCTCCC
129 TCTCCC
* * *
112046575 TGTATTTGACAGTGGAATAGATCGAAGATTACAGATCTT
1 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
112046614 ATCTCCCTAA
Statistics
Matches: 423, Mismatches: 16, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
133 10 0.02
134 335 0.79
135 3 0.01
136 75 0.18
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (134 bp):
TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATC
TCCC
Found at i:112046620 original size:46 final size:46
Alignment explanation
Indices: 112046009--112046621 Score: 234
Period size: 46 Copynumber: 13.7 Consensus size: 46
112045999 GGTGGCGAAG
** * * *
112046009 TAGATCGAAGAAAGCAGATCTTATCTTCATGTATTTGGC-GT-GAA
1 TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * * *
112046053 GTAGATCGAAGATTGTAGATCTTACCTTCCTGTATTTGGCAG-CGAA
1 -TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * * * *
112046099 GAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAG
1 -TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * ** ** *
112046143 TACATTGAAGCCGATA-AT-TCTATCTCCCTGTATTTGGCAGTGGAA
1 TAGATCGAAGATGGCAGATCT-TACCTCCCTGTATTTGGCAGTGGAA
* * * * *
112046188 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG-CGAA
1 TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * * * * *
112046233 GCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAG
1 -TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * ** ** *
112046277 TACATTGAAGCCGATA-AT-TCTATCTCCCTGTATTTGGCAGTGGAA
1 TAGATCGAAGATGGCAGATCT-TACCTCCCTGTATTTGGCAGTGGAA
* * * * *
112046322 TAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG-CGAA
1 TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * * * * *
112046367 GCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAG
1 -TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * ** ** *
112046411 TACATTGAAGCCGATA-AT-TCTATCTCCCTGTATTTGGCAGTGGAA
1 TAGATCGAAGATGGCAGATCT-TACCTCCCTGTATTTGGCAGTGGAA
* * * * **
112046456 TAGATTGAAGACT-GCAGATCTTGCCTTCCTGTATTTAGCA-ACGAA
1 TAGATCGAAGA-TGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
* * * * * *
112046501 GCAGATCGAAGATGGCAGGTTTTACCTCCCTGTGA-CT-ACAGTGGAG
1 -TAGATCGAAGATGGCAGATCTTACCTCCCTGT-ATTTGGCAGTGGAA
* * * * * * *
112046547 TACATTGAAGCT-G-ATAACTCTATCTCCCTGTATTTGACAGTGGAA
1 TAGATCGAAGATGGCAGATCT-TACCTCCCTGTATTTGGCAGTGGAA
** *
112046592 TAGATCGAAGATTACAGATCTTATCTCCCT
1 TAGATCGAAGATGGCAGATCTTACCTCCCT
112046622 AAGTAATAGT
Statistics
Matches: 403, Mismatches: 130, Indels: 69
0.67 0.22 0.11
Matches are distributed among these distances:
41 3 0.01
42 33 0.08
43 40 0.10
44 24 0.06
45 125 0.31
46 170 0.42
47 8 0.02
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (46 bp):
TAGATCGAAGATGGCAGATCTTACCTCCCTGTATTTGGCAGTGGAA
Found at i:112046802 original size:130 final size:130
Alignment explanation
Indices: 112046650--112047161 Score: 742
Period size: 130 Copynumber: 3.9 Consensus size: 130
112046640 TCGCATCAAG
* * ** * *
112046650 TCTTATCTCCCTAAGCAGTAGTGGAGCA-GACGAA-ACCACAGATTTTACCTCTCTGACTACAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
* * ** *****
112046713 GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATCGAAGATTACA
66 GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTG--GGCAACAGTGGAATAGATCGAAGATTACA
112046778 GA
129 GA
* *
112046780 TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCGGATTTGACCTCCCTGATTACAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
* *
112046845 GGAGTACATTAAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTATAGA
66 GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGA
* * * *
112046910 TC-TATCTCCCTAAGCAATAGTGGAGCAGGTTGAAGATGGCGGATTCTACCTCCCTGATTACAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
* *
112046974 GGAGTACATTGGAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAAAAGATCGAAGATTACAGA
66 GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGA
*
112047039 TCTTATCTCCCTAAGCAATAGTGGAGCAAGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
*
112047104 GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAGTGGAATAGATCGAAGA
66 GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGA
112047162 AAACAACATT
Statistics
Matches: 344, Mismatches: 35, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
129 121 0.35
130 166 0.48
131 5 0.01
132 52 0.15
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (130 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGT
GGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTACAGA
Found at i:112046887 original size:43 final size:43
Alignment explanation
Indices: 112046840--112047149 Score: 167
Period size: 43 Copynumber: 7.2 Consensus size: 43
112046830 CTCCCTGATT
* *
112046840 ACAGTGGAGTACATTAAAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTACATTGAAGATGGTAGTTCTATCTCCCTGGGCA
* * * ** * **
112046883 ACAGTGGAATAGATCGAAGATTATAGATCTATCTCCCTAAGCA
1 ACAGTGGAGTACATTGAAGATGGTAGTTCTATCTCCCTGGGCA
* * ** ** * ***
112046926 ATAGTGGAGCAGGTTGAAGATGGCGGATTCTACCTCCCT-GATT
1 ACAGTGGAGTACATTGAAGATGGTAG-TTCTATCTCCCTGGGCA
* *
112046969 ACAGTGGAGTACATTGGAGCTGGTAGTTCTATCTCCCTGGGCA
1 ACAGTGGAGTACATTGAAGATGGTAGTTCTATCTCCCTGGGCA
** * * *** * **
112047012 ACAGTGGAAAAGATCGAAGATTACAGATCTTATCTCCCTAAGCA
1 ACAGTGGAGTACATTGAAGATGGTAGTTC-TATCTCCCTGGGCA
* * * * * * * ***
112047056 ATAGTGGAGCA-AGTCGAAGACGGCAGATTTTACCTCCCT-GATT
1 ACAGTGGAGTACA-TTGAAGATGGTAG-TTCTATCTCCCTGGGCA
* *
112047099 ACAGTGGAGTACATTGAAGCTGGTAGTTCTATCTCCCTGGACA
1 ACAGTGGAGTACATTGAAGATGGTAGTTCTATCTCCCTGGGCA
112047142 ACAGTGGA
1 ACAGTGGA
112047150 ATAGATCGAA
Statistics
Matches: 188, Mismatches: 72, Indels: 14
0.69 0.26 0.05
Matches are distributed among these distances:
42 21 0.11
43 117 0.62
44 49 0.26
45 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (43 bp):
ACAGTGGAGTACATTGAAGATGGTAGTTCTATCTCCCTGGGCA
Found at i:112046933 original size:259 final size:259
Alignment explanation
Indices: 112046653--112047161 Score: 752
Period size: 259 Copynumber: 2.0 Consensus size: 259
112046643 CATCAAGTCT
* * *
112046653 TATCTCCCTAAGCAGTAGTGGAGCA-GACGAA-ACCACAGATTTTACCTCTCTGACTACAGTGGA
1 TATCTCCCTAAGCAATAGTGGAGCAGGACGAAGACCACAGATTCTACCTCCCTGACTACAGTGGA
***** *
112046716 GTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATCGAAGATTACAGAT
66 GTACATTGAAGCCGATAACTCTATCTCCCTG--GGCAACAGTGGAAAAGATCGAAGATTACAGAT
* *
112046781 CTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGGCGGATTTGACCTCCCTGATTACAGTG
129 CTTATCTCCCTAAGCAATAGTGGAGCAAGTCGAAGACGGCAGATTTGACCTCCCTGATTACAGTG
*
112046846 GAGTACATTAAAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAATAGATCGAAGATTATAGAT
194 GAGTACATTAAAGCTGGTAGTTCTATCTCCCTGGACAACAGTGGAATAGATCGAAGATTATAGAT
112046911 C
259 C
** *** * *
112046912 TATCTCCCTAAGCAATAGTGGAGCAGGTTGAAGATGGCGGATTCTACCTCCCTGATTACAGTGGA
1 TATCTCCCTAAGCAATAGTGGAGCAGGACGAAGACCACAGATTCTACCTCCCTGACTACAGTGGA
* * * **
112046977 GTACATTGGAGCTGGTAGTTCTATCTCCCTGGGCAACAGTGGAAAAGATCGAAGATTACAGATCT
66 GTACATTGAAGCCGATAACTCTATCTCCCTGGGCAACAGTGGAAAAGATCGAAGATTACAGATCT
*
112047042 TATCTCCCTAAGCAATAGTGGAGCAAGTCGAAGACGGCAGATTTTACCTCCCTGATTACAGTGGA
131 TATCTCCCTAAGCAATAGTGGAGCAAGTCGAAGACGGCAGATTTGACCTCCCTGATTACAGTGGA
*
112047107 GTACATTGAAGCTGGTAGTTCTATCTCCCTGGACAACAGTGGAATAGATCGAAGA
196 GTACATTAAAGCTGGTAGTTCTATCTCCCTGGACAACAGTGGAATAGATCGAAGA
112047162 AAACAACATT
Statistics
Matches: 222, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
259 167 0.75
260 4 0.02
261 51 0.23
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (259 bp):
TATCTCCCTAAGCAATAGTGGAGCAGGACGAAGACCACAGATTCTACCTCCCTGACTACAGTGGA
GTACATTGAAGCCGATAACTCTATCTCCCTGGGCAACAGTGGAAAAGATCGAAGATTACAGATCT
TATCTCCCTAAGCAATAGTGGAGCAAGTCGAAGACGGCAGATTTGACCTCCCTGATTACAGTGGA
GTACATTAAAGCTGGTAGTTCTATCTCCCTGGACAACAGTGGAATAGATCGAAGATTATAGATC
Found at i:112048255 original size:11 final size:11
Alignment explanation
Indices: 112048239--112048273 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
112048229 CCGGATTCCC
112048239 CTCCCTTCTCT
1 CTCCCTTCTCT
112048250 CTCCCTTCTCT
1 CTCCCTTCTCT
112048261 CTTCCC-TCTCT
1 C-TCCCTTCTCT
112048272 CT
1 CT
112048274 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:112048758 original size:6 final size:6
Alignment explanation
Indices: 112048758--112048791 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
112048748 TTATTAGTAT
*
112048758 TATTAG TATTAG TATTAC TATTATG TATTAG TAT
1 TATTAG TATTAG TATTAG TATTA-G TATTAG TAT
112048792 ATATTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (6 bp):
TATTAG
Found at i:112048787 original size:25 final size:22
Alignment explanation
Indices: 112048758--112048806 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
112048748 TTATTAGTAT
112048758 TATTAGTATTAGTATTACTATTATG
1 TATTAGTA-TA-TATT-CTATTATG
*
112048783 TATTAGTATATATTTTATTATG
1 TATTAGTATATATTCTATTATG
112048805 TA
1 TA
112048807 CGTGTATACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 9 0.39
23 4 0.17
24 2 0.09
25 8 0.35
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (22 bp):
TATTAGTATATATTCTATTATG
Found at i:112049244 original size:19 final size:18
Alignment explanation
Indices: 112049200--112049259 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 18
112049190 ATTATCATTG
112049200 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
112049218 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
112049240 ATATATATTTCTAATATTAT
1 -TATATATTT-TAATATTAT
112049260 ATTGTATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.42
21 9 0.25
22 8 0.22
23 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:112049264 original size:64 final size:64
Alignment explanation
Indices: 112049138--112049269 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 64
112049128 GTCGTATTAT
* *
112049138 TATATTTTAATATTATATTATATAATTATATATACATATATCTTTTATATATATTATCATTGTA
1 TATATTTTAATATTATATTATATAATTACATATACATATATCATTTATATATATTATCATTGTA
* * *
112049202 TATATTTTAATATTATTAGTTATAT-TTTACACTATTATATATAT-ATTTCTA-ATATTAT-ATT
1 TATATTTTAATATTA-TA-TTATATAATTACA-TA-TACATATATCATTTATATATATTATCATT
112049263 GTA
62 GTA
112049266 TATA
1 TATA
112049270 CTGTCGTTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
64 25 0.42
65 13 0.22
66 13 0.22
67 8 0.14
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (64 bp):
TATATTTTAATATTATATTATATAATTACATATACATATATCATTTATATATATTATCATTGTA
Found at i:112049705 original size:38 final size:37
Alignment explanation
Indices: 112049621--112049715 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
112049611 TATACGTACT
*
112049621 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
112049659 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
112049695 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
112049716 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:112054571 original size:31 final size:31
Alignment explanation
Indices: 112054514--112054574 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
112054504 GTAGCAAGTT
* * *
112054514 GACTTTTTTTGAAAGGTTGATGGTCAAATTA
1 GACTTTTTCTAAAAGGTTGAAGGTCAAATTA
112054545 GACTTTTTCTAAAAGGTT-AAGAGTCAAATT
1 GACTTTTTCTAAAAGGTTGAAG-GTCAAATT
112054575 TAACTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (31 bp):
GACTTTTTCTAAAAGGTTGAAGGTCAAATTA
Found at i:112056383 original size:30 final size:30
Alignment explanation
Indices: 112056349--112056411 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
112056339 ACTTAACAAG
112056349 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
112056379 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
112056409 CAA
1 CAA
112056412 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:112073931 original size:18 final size:18
Alignment explanation
Indices: 112073908--112073947 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
112073898 TAAATATATC
*
112073908 ATTTGATATATGAGTTTA
1 ATTTGATATATGAGATTA
* *
112073926 ATTTGATCTTTGAGATTA
1 ATTTGATATATGAGATTA
112073944 ATTT
1 ATTT
112073948 TGGTGTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.15, T:0.53
Consensus pattern (18 bp):
ATTTGATATATGAGATTA
Found at i:112074223 original size:13 final size:13
Alignment explanation
Indices: 112074205--112074229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112074195 TTTACGGTAA
112074205 AAAAATTAAATTG
1 AAAAATTAAATTG
112074218 AAAAATTAAATT
1 AAAAATTAAATT
112074230 TTAAAGGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
AAAAATTAAATTG
Found at i:112076053 original size:19 final size:20
Alignment explanation
Indices: 112076001--112076061 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 20
112075991 TTAGTAAATT
112076001 TATTTTT-ATATATTTTTTA
1 TATTTTTAATATATTTTTTA
*
112076020 GA--TTTAATATTATTTTTTA
1 TATTTTTAATA-TATTTTTTA
112076039 TATTTTTAATA-ATTTTTTA
1 TATTTTTAATATATTTTTTA
112076058 -ATTT
1 TATTT
112076062 GAAATGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 3 0.08
18 7 0.19
19 19 0.53
21 7 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TATTTTTAATATATTTTTTA
Found at i:112076073 original size:37 final size:38
Alignment explanation
Indices: 112076001--112076093 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 38
112075991 TTAGTAAATT
*
112076001 TATTTTTATATATTTTTTAGATTTAATATTATTTTT-TA
1 TATTTTTATA-ATTTTTTAGATTTAATATGATTTTTGTA
*
112076039 TATTTTTAATAATTTTTTA-ATTTGAA-ATGGTTTTTGTA
1 TATTTTT-ATAATTTTTTAGATTT-AATATGATTTTTGTA
*
112076077 -ATTTTTTATGATTTTTT
1 TA-TTTTTATAATTTTTT
112076094 TTAAACTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
37 21 0.44
38 24 0.50
39 3 0.06
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (38 bp):
TATTTTTATAATTTTTTAGATTTAATATGATTTTTGTA
Found at i:112076445 original size:11 final size:11
Alignment explanation
Indices: 112076431--112076462 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
112076421 TAACATTTAT
112076431 TTATAAAATTA
1 TTATAAAATTA
112076442 TTATAAAA-TA
1 TTATAAAATTA
112076452 TT-TAAAATTA
1 TTATAAAATTA
112076462 T
1 T
112076463 ACATTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.25
10 7 0.35
11 8 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TTATAAAATTA
Found at i:112081861 original size:4 final size:4
Alignment explanation
Indices: 112081852--112081878 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
112081842 CATGAACCTT
112081852 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
112081879 TATGTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:112082071 original size:2 final size:2
Alignment explanation
Indices: 112082066--112082101 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
112082056 ATATATATGT
112082066 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
112082102 TCCCCAAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:112084386 original size:33 final size:31
Alignment explanation
Indices: 112084342--112084403 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 31
112084332 TTTGGGGTCC
112084342 AATTTGATACCTGAAT-TTTATTATTTTTTTTCT
1 AATTTGATACCT-AATCTTT-TT-TTTTTTTTCT
*
112084375 AATTTGGTACCTAATCTTTTTTTTTTTTT
1 AATTTGATACCTAATCTTTTTTTTTTTTT
112084404 GAGATTTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 8 0.30
32 5 0.19
33 14 0.52
ACGTcount: A:0.21, C:0.10, G:0.06, T:0.63
Consensus pattern (31 bp):
AATTTGATACCTAATCTTTTTTTTTTTTTCT
Found at i:112084821 original size:4 final size:4
Alignment explanation
Indices: 112084812--112085436 Score: 368
Period size: 4 Copynumber: 160.2 Consensus size: 4
112084802 TGCCAAATTA
*
112084812 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * * *
112084860 AGGG AGGG AGAG AGTG AGAG GGAG GGAG GGAG CGAG CGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * *
112084908 GGGG AGGG AGAG AGAG AGAG GGAG AGGG GGAG GGAG AGAG AGAG AGCG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * *
112084956 AGAG GGAG AGAG AGAG GGAG AGAG GGAG AAAG GGAG AGAG AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * *
112085004 AGA- AG-G AGAG GGAG AGAG -GAG GGAG AGAG TGAG AGGG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * *
112085049 AGAG AGAG AGAG AGAG GGAG AGAG AGAG GGAG AGAG AGAG AGAG GGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
112085097 AGGG AGAG GGAG AGAG GGAG AAAG AGAG AG-G AGGG TGAG GGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * *
112085144 AGAG -GA- AGAG A-AG -GAG -GAG AGAG GGAG AGAG GGAG GGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * * *
112085187 A-ATG AGGG GGAG AGAG AGGG GGGG GGAG -GGG AG-G GGAG AGAG GGAG
1 AGA-G AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * * * * *
112085233 GGAG GGAG -GGG GGGG AGAG GGGG GGAG AGAG GGAG TGAG AGGG AG-G
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * *
112085279 GGAG GGAG -GAG AGAG AGAG GGAG -GGG A-AG GGTA- AGGG AGAG GGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AG-AG AGAG AGAG AGAG
* * * * * * * * * *
112085324 GGGG AGAG AGGG AGGG AGAG GGAG AGGG AGAG GGAG GGAG AGGG AGGG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * *
112085372 AGGG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGGG AGAG AGGG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
*
112085420 GGAG AGAG AGAG AGAG A
1 AGAG AGAG AGAG AGAG A
112085437 AGGAGAGTCA
Statistics
Matches: 492, Mismatches: 110, Indels: 38
0.77 0.17 0.06
Matches are distributed among these distances:
3 36 0.07
4 455 0.92
5 1 0.00
ACGTcount: A:0.37, C:0.00, G:0.62, T:0.01
Consensus pattern (4 bp):
AGAG
Found at i:112084823 original size:6 final size:6
Alignment explanation
Indices: 112084812--112085436 Score: 368
Period size: 6 Copynumber: 106.8 Consensus size: 6
112084802 TGCCAAATTA
*
112084812 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * * *
112084860 AGGGAG GGAGAG AGTGAG AGGGAG GGAGGG AGCGAG CGAGAG GGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * *
112084908 GGGGAG GGAGAG AGAGAG AGGGAG AGGGGG AGGGAG AGAGAG AGAGCG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * *
112084956 AGAGGG AGAGAG AGAGGG AGAGAG GGAGAA AGGGAG AGAGAG AGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * *
112085004 AGA-AG -GAGAG GGAGAG AG-GAG GGAGAG AGTGAG AGGGAG GGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * *
112085049 AGAGAG AGAGAG AGAGGG AGAGAG AGAGGG AGAGAG AGAGAG AGGGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * *
112085097 AGGGAG AGGGAG AGAGGG AGAAAG AGAGAG -GAGGG TGAGGG AGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * *
112085144 AGAG-G A-AGAG A-AG-G AG-GAG AGAGGG AGAGAG GGAGGG AGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * * *
112085187 A-ATGAG GGGGAG AGAGAG GGGGGG GGAG-G GGAG-G GGAGAG AGGGAG
1 AGA-GAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * * * * * *
112085233 GGAGGG AG-GGG GGGGAG AGGGGG GGAGAG AGGGAG TGAGAG GGAG-G
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * * * * * *
112085279 GGAGGG AG-GAG AGAGAG AGGGAG -GGGA- AGGGTA- AGGGAG AGGGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAG-AG AGAGAG AGAGAG
* * * * * * * * * *
112085324 GGGGAG AGAGGG AGGGAG AGGGAG AGGGAG AGGGAG GGAGAG GGAGGG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
* * *
112085372 AGGGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGGG AGAGAG GGAGAG
1 AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG AGAGAG
*
112085420 GGAGAG AGAGAG AGAGA
1 AGAGAG AGAGAG AGAGA
112085437 AGGAGAGTCA
Statistics
Matches: 494, Mismatches: 108, Indels: 34
0.78 0.17 0.05
Matches are distributed among these distances:
4 7 0.01
5 53 0.11
6 434 0.88
ACGTcount: A:0.37, C:0.00, G:0.62, T:0.01
Consensus pattern (6 bp):
AGAGAG
Found at i:112085442 original size:10 final size:10
Alignment explanation
Indices: 112085345--112085443 Score: 50
Period size: 10 Copynumber: 10.1 Consensus size: 10
112085335 GAGGGAGAGG
*
112085345 GAGAGGGAGA
1 GAGAAGGAGA
* *
112085355 GGGAGGGAGA
1 GAGAAGGAGA
* * *
112085365 GGGAGGGAGG
1 GAGAAGGAGA
112085375 GAGAGAGAGAGA
1 GAGA-AG-GAGA
112085387 GAGAGAGAGAGA
1 GAGA-AG-GAGA
112085399 GAGAGAGG-GA
1 GAGA-AGGAGA
112085409 GAG-AGG-GA
1 GAGAAGGAGA
112085417 GAG--GGAGA
1 GAGAAGGAGA
112085425 GAG-A-GAGA
1 GAGAAGGAGA
112085433 GAGAAGGAGA
1 GAGAAGGAGA
112085443 G
1 G
112085444 TCAAATTCAG
Statistics
Matches: 78, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
7 2 0.03
8 20 0.26
9 1 0.01
10 31 0.40
11 2 0.03
12 22 0.28
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (10 bp):
GAGAAGGAGA
Found at i:112088635 original size:20 final size:20
Alignment explanation
Indices: 112088610--112088647 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
112088600 CACTGAAAAC
112088610 ATATTATCATCTTATTTTAT
1 ATATTATCATCTTATTTTAT
112088630 ATATTATCATCTTATTTT
1 ATATTATCATCTTATTTT
112088648 TGGGTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATTATCATCTTATTTTAT
Found at i:112089256 original size:12 final size:13
Alignment explanation
Indices: 112089239--112089276 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
112089229 TAAACATATG
112089239 TTAAAAATTAAT-
1 TTAAAAATTAATA
*
112089251 TTAAAAATAAATA
1 TTAAAAATTAATA
112089264 TTATAAAATTAAT
1 TTA-AAAATTAAT
112089277 GATTTTGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 3 0.14
14 8 0.36
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TTAAAAATTAATA
Found at i:112092955 original size:16 final size:16
Alignment explanation
Indices: 112092934--112092967 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
112092924 CCCGAGAAAT
112092934 AAAAAA-AAAAAATAAG
1 AAAAAAGAAAAAA-AAG
112092950 AAAAAAGAAAAAAAAG
1 AAAAAAGAAAAAAAAG
112092966 AA
1 AA
112092968 GCAAAGCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:112101090 original size:24 final size:25
Alignment explanation
Indices: 112101058--112101108 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
112101048 ATATGGTACG
112101058 CAAGGAATAGTAAAT-TTCCTGACA
1 CAAGGAATAGTAAATATTCCTGACA
*
112101082 CAAGGAATAGTAATTATTCCTGACA
1 CAAGGAATAGTAAATATTCCTGACA
112101107 CA
1 CA
112101109 TTCCTAATAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (25 bp):
CAAGGAATAGTAAATATTCCTGACA
Found at i:112109465 original size:8 final size:8
Alignment explanation
Indices: 112109452--112109480 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
112109442 TTATGTTTAG
112109452 TATATTAT
1 TATATTAT
112109460 TATATTAT
1 TATATTAT
112109468 TATATTAT
1 TATATTAT
112109476 TATAT
1 TATAT
112109481 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:112109513 original size:5 final size:5
Alignment explanation
Indices: 112109503--112109543 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
112109493 TTATGTTTTA
112109503 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
112109544 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:112109584 original size:21 final size:20
Alignment explanation
Indices: 112109551--112109590 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
112109541 TATAAACTAA
*
112109551 AGAAACAAATGAAAGGAAAT
1 AGAAACAAATGAAACGAAAT
112109571 AGAAACAGAATGAAACGAAA
1 AGAAACA-AATGAAACGAAA
112109591 CAGAGAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.65, C:0.07, G:0.20, T:0.07
Consensus pattern (20 bp):
AGAAACAAATGAAACGAAAT
Found at i:112111310 original size:18 final size:18
Alignment explanation
Indices: 112111279--112111321 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
112111269 GTTGAGGAAA
* *
112111279 AGGTTTTGATTTTTCATG
1 AGGTTTTGACTTTTCAGG
* *
112111297 AGGTTTTGGCTTTTTAGG
1 AGGTTTTGACTTTTCAGG
112111315 AGGTTTT
1 AGGTTTT
112111322 TTATTAGGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.14, C:0.05, G:0.28, T:0.53
Consensus pattern (18 bp):
AGGTTTTGACTTTTCAGG
Found at i:112114318 original size:13 final size:13
Alignment explanation
Indices: 112114300--112114327 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
112114290 TATTGATAAT
112114300 TAAATCACAATTA
1 TAAATCACAATTA
112114313 TAAATCACAATTA
1 TAAATCACAATTA
112114326 TA
1 TA
112114328 TTGATAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAATCACAATTA
Found at i:112117982 original size:35 final size:34
Alignment explanation
Indices: 112117936--112118309 Score: 435
Period size: 35 Copynumber: 10.7 Consensus size: 34
112117926 TTTCCTCATT
* *
112117936 GAAATACCATACCTACATTTCACAACTCGGTATG
1 GAAATACCATACCTACGTTTCACAACTCAGTATG
* *
112117970 AGAAATGCCATACCTACATTTCACAACTCAGTATG
1 -GAAATACCATACCTACGTTTCACAACTCAGTATG
* * *
112118005 GTTAATACCATACCTAGGTTTCACAACTCGGTATAG
1 G-AAATACCATACCTACGTTTCACAACTCAGTAT-G
** *
112118041 TTAATACCATACCTACGTTTCACAACTTAGTATG
1 GAAATACCATACCTACGTTTCACAACTCAGTATG
* *
112118075 GATGATACCGTACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
* *
112118110 GATGATACCGTACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
* *
112118145 GATGATACCGTACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
* *
112118180 GATGATACCGTACCTACGTTTCACAACTCAGTATG
1 GA-AATACCATACCTACGTTTCACAACTCAGTATG
* *
112118215 GATGATACCGTACCT-CTGTTTCACAACTCAGTATG
1 GA-AATACCATACCTAC-GTTTCACAACTCAGTATG
* *
112118250 GTTAATACCATACTTACGTTTCACAACTCAGTATG
1 G-AAATACCATACCTACGTTTCACAACTCAGTATG
*
112118285 GTTAATACCATACCTACGTTTCACA
1 G-AAATACCATACCTACGTTTCACA
112118310 CTTTGCCATG
Statistics
Matches: 312, Mismatches: 21, Indels: 12
0.90 0.06 0.03
Matches are distributed among these distances:
34 3 0.01
35 307 0.98
36 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (34 bp):
GAAATACCATACCTACGTTTCACAACTCAGTATG
Found at i:112118124 original size:105 final size:105
Alignment explanation
Indices: 112117938--112118309 Score: 532
Period size: 105 Copynumber: 3.5 Consensus size: 105
112117928 TCCTCATTGA
* * * *
112117938 AATACCATACCTACATTTCACAACTCGGTATGAGA-AATGCCATACCTACATTTCACAACTCAGT
1 AATACCATACCTACGTTTCACAACTCAGTATG-GATAATACCATACCTACGTTTCACAACTCAGT
* * * * * *
112118002 ATGGTTAATACCATACCTAGGTTTCACAACTCGGTATAGTT
65 ATGGATGATACCGTACCTACGTTTCACAACTCAGTATGGTT
* * *
112118043 AATACCATACCTACGTTTCACAACTTAGTATGGATGATACCGTACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGATAATACCATACCTACGTTTCACAACTCAGTA
*
112118108 TGGATGATACCGTACCTACGTTTCACAACTCAGTATGGAT
66 TGGATGATACCGTACCTACGTTTCACAACTCAGTATGGTT
* * * *
112118148 GATACCGTACCTACGTTTCACAACTCAGTATGGATGATACCGTACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACGTTTCACAACTCAGTATGGATAATACCATACCTACGTTTCACAACTCAGTA
112118213 TGGATGATACCGTACCT-CTGTTTCACAACTCAGTATGGTT
66 TGGATGATACCGTACCTAC-GTTTCACAACTCAGTATGGTT
* *
112118253 AATACCATACTTACGTTTCACAACTCAGTATGGTTAATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACAACTCAGTATGGATAATACCATACCTACGTTTCACA
112118310 CTTTGCCATG
Statistics
Matches: 241, Mismatches: 24, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
104 3 0.01
105 238 0.99
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (105 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGATAATACCATACCTACGTTTCACAACTCAGTA
TGGATGATACCGTACCTACGTTTCACAACTCAGTATGGTT
Found at i:112118447 original size:14 final size:15
Alignment explanation
Indices: 112118428--112118456 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
112118418 TTTTATCATC
112118428 AATACAT-ATGAAAT
1 AATACATCATGAAAT
112118442 AATACATCATGAAAT
1 AATACATCATGAAAT
112118457 TCATAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (15 bp):
AATACATCATGAAAT
Found at i:112121627 original size:20 final size:20
Alignment explanation
Indices: 112121598--112121638 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
112121588 TAAAATTGGT
112121598 AATTAATAAAACAGTTTTGA
1 AATTAATAAAACAGTTTTGA
*
112121618 AATTAGTAAAACAGTTTTGA
1 AATTAATAAAACAGTTTTGA
112121638 A
1 A
112121639 CAGCAGCAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.34
Consensus pattern (20 bp):
AATTAATAAAACAGTTTTGA
Found at i:112122995 original size:16 final size:17
Alignment explanation
Indices: 112122966--112123001 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
112122956 TATTATGGAT
*
112122966 ATATATGTGTAAATGTG
1 ATATATGTGCAAATGTG
112122983 ATAT-TGTGCAAATGTG
1 ATATATGTGCAAATGTG
112122999 ATA
1 ATA
112123002 ATTGGATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.39
Consensus pattern (17 bp):
ATATATGTGCAAATGTG
Found at i:112123860 original size:5 final size:5
Alignment explanation
Indices: 112123850--112123874 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
112123840 CCAACTTGTA
112123850 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
112123875 ATATACCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:112124770 original size:39 final size:39
Alignment explanation
Indices: 112124713--112124892 Score: 227
Period size: 39 Copynumber: 4.6 Consensus size: 39
112124703 AAAGCCTTCG
* * **
112124713 GGACTTTAAGCCCAGATAT-ATTCCCAGCACGTAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTAC
* * *
112124752 GGACCTTAAGTCCGGATATAATTCCTGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* * *
112124791 GAACTTTAAGTCCAGATATAATTCTCGCATATAGCCTAC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
* *
112124830 GGATTTTAAGTCCGGATATAATTCCCGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
*
112124869 GGACTTTTAGTCCGGATATAATTC
1 GGACTTTAAGTCCGGATATAATTC
112124893 TCAAATATCA
Statistics
Matches: 120, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 115 0.96
40 5 0.04
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (39 bp):
GGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC
Found at i:112124844 original size:78 final size:79
Alignment explanation
Indices: 112124715--112124895 Score: 258
Period size: 78 Copynumber: 2.3 Consensus size: 79
112124705 AGCCTTCGGG
* * * *
112124715 ACTTTAAGCCCAGATAT-ATTCCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAATTCCTG
1 ACTTTAAGTCCAGATATAATTCTCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCG
112124779 CATATAGCCTGCGA
66 CATATAGCCTGCGA
* **
112124793 ACTTTAAGTCCAGATATAATTCTC-GCATATAGCCTACGGATTTTAAGTCCGGATATAATTCCCG
1 ACTTTAAGTCCAGATATAATTCTCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCG
*
112124857 CATATAGCCTGCGG
66 CATATAGCCTGCGA
* *
112124871 ACTTTTAGTCCGGATATAATTCTCA
1 ACTTTAAGTCCAGATATAATTCTCA
112124896 AATATCATGC
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
78 86 0.95
79 5 0.05
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (79 bp):
ACTTTAAGTCCAGATATAATTCTCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCCG
CATATAGCCTGCGA
Found at i:112136061 original size:13 final size:13
Alignment explanation
Indices: 112136017--112136062 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
112136007 GAAAAAATAT
*
112136017 AATTAAACACTAA
1 AATTTAACACTAA
* *
112136030 AATTTATATACCAA
1 AATTTA-ACACTAA
112136044 AATTTAACACTAA
1 AATTTAACACTAA
112136057 AATTTA
1 AATTTA
112136063 TGCTAATCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
AATTTAACACTAA
Found at i:112141367 original size:13 final size:13
Alignment explanation
Indices: 112141341--112141378 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
112141331 TTCATTAAGA
* *
112141341 AATTTTAAAAAAT
1 AATTTTATATAAT
112141354 AATTTTATATAAT
1 AATTTTATATAAT
112141367 -ATTTTATATAAT
1 AATTTTATATAAT
112141379 TTTATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTTTATATAAT
Found at i:112142034 original size:17 final size:18
Alignment explanation
Indices: 112142008--112142042 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
112141998 AATCAAAAAT
*
112142008 TAAATTATAAAAA-TATA
1 TAAATCATAAAAAGTATA
112142025 TAAATCATAAAAAGTATA
1 TAAATCATAAAAAGTATA
112142043 ATATGACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (18 bp):
TAAATCATAAAAAGTATA
Found at i:112142362 original size:20 final size:20
Alignment explanation
Indices: 112142337--112142380 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
112142327 TTATGTAACG
** *
112142337 ATATAAATTGGTATTGATTT
1 ATATAAATTAATATAGATTT
112142357 ATATAAATTAATATAGATTT
1 ATATAAATTAATATAGATTT
112142377 ATAT
1 ATAT
112142381 TATCAATACG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (20 bp):
ATATAAATTAATATAGATTT
Found at i:112144499 original size:6 final size:7
Alignment explanation
Indices: 112144484--112144511 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
112144474 AAAAAAGGGT
112144484 AAAAGAA
1 AAAAGAA
112144491 AAAAGAA
1 AAAAGAA
112144498 AAAAGAA
1 AAAAGAA
112144505 AAAAGAA
1 AAAAGAA
112144512 GACAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:112144917 original size:6 final size:6
Alignment explanation
Indices: 112144903--112144932 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
112144893 GAAGGAAGGA
*
112144903 AGGGGG AGGGTG AGGGTG AGGGTG AGGGTG
1 AGGGTG AGGGTG AGGGTG AGGGTG AGGGTG
112144933 GCTTGAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.70, T:0.13
Consensus pattern (6 bp):
AGGGTG
Found at i:112146283 original size:52 final size:53
Alignment explanation
Indices: 112146161--112146283 Score: 203
Period size: 53 Copynumber: 2.3 Consensus size: 53
112146151 TAATATAATA
*
112146161 ATAAAATTATATTTTAACCCTCCTAAAAAATTGTTATTCTTTTTTAGTTCCCC
1 ATAAAATTATATTTTAACCCTCCTAAAAAATTGTTATTCCTTTTTAGTTCCCC
* *
112146214 AAAAAATTATACTTTAACCCTCCTAAAAAATTGTTATTCCTTTTTAGTTCCCC
1 ATAAAATTATATTTTAACCCTCCTAAAAAATTGTTATTCCTTTTTAGTTCCCC
*
112146267 -TAAAATAATATTTTAAC
1 ATAAAATTATATTTTAAC
112146284 TCCCCGAGCA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
52 14 0.22
53 50 0.78
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (53 bp):
ATAAAATTATATTTTAACCCTCCTAAAAAATTGTTATTCCTTTTTAGTTCCCC
Found at i:112149859 original size:22 final size:21
Alignment explanation
Indices: 112149830--112149870 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
112149820 TTCAAGTTTC
112149830 TGTCAAAA-TTTAAGGCATTGT
1 TGTCAAAACTTT-AGGCATTGT
112149851 TGTCTAAAACTTTAGGCATT
1 TGTC-AAAACTTTAGGCATT
112149871 TGAGAAGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 11 0.61
23 3 0.17
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (21 bp):
TGTCAAAACTTTAGGCATTGT
Found at i:112154497 original size:6 final size:6
Alignment explanation
Indices: 112154486--112154520 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
112154476 TAATCTTCAT
*
112154486 TCCCCA TCCCCA TCTCCA TCCCCA TCCCCA TCCCC
1 TCCCCA TCCCCA TCCCCA TCCCCA TCCCCA TCCCC
112154521 CTCAGGCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.14, C:0.66, G:0.00, T:0.20
Consensus pattern (6 bp):
TCCCCA
Found at i:112157603 original size:22 final size:22
Alignment explanation
Indices: 112157578--112157620 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
112157568 TAATAAAAAG
112157578 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
112157600 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
112157621 CACTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:112161335 original size:22 final size:22
Alignment explanation
Indices: 112161310--112161357 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
112161300 TAATAAAAAG
112161310 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* * *
112161332 AATATTTACAGAATATTCCTAC
1 AATATCTACAAAATATTCCTAA
112161354 AATA
1 AATA
112161358 ATACTTCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:112177268 original size:9 final size:9
Alignment explanation
Indices: 112177254--112177278 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
112177244 CTTGGGTTAG
112177254 AACCTCTTC
1 AACCTCTTC
112177263 AACCTCTTC
1 AACCTCTTC
112177272 AACCTCT
1 AACCTCT
112177279 AATTCCTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (9 bp):
AACCTCTTC
Found at i:112184905 original size:30 final size:30
Alignment explanation
Indices: 112184871--112184936 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
112184861 TTAATAATAA
*
112184871 AAAAATTATACTTT-ATCCTCTAAAAATTAT
1 AAAAATT-TAATTTAATCCTCTAAAAATTAT
** *
112184901 AAAAATTTAATTTAATTTTTTAAAAATTAT
1 AAAAATTTAATTTAATCCTCTAAAAATTAT
112184931 AAAAAT
1 AAAAAT
112184937 ATAAACGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 5 0.16
30 26 0.84
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (30 bp):
AAAAATTTAATTTAATCCTCTAAAAATTAT
Found at i:112186035 original size:109 final size:111
Alignment explanation
Indices: 112185771--112186110 Score: 490
Period size: 116 Copynumber: 3.0 Consensus size: 111
112185761 AAAAAACTTT
112185771 TTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGT-CAACCAAAAAAAAATTCGAATTTTTT
1 TTTTTT-GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAATTTTTT
*
112185835 AGAGCAAAAAAAAATTTTTTTTGCTCTCTAAAAATACGAGTTTTAAAAAAAAAA
65 ---TC-AAAAAAAA--TTTTTT-CTCTCTAAAAATACGAGTTTTAAAAAAAAAA
*
112185889 -ATTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-CAAAAAAAAATTCGAATTTTTTT
1 TTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAATTTTTTT
112185952 CAAAAAAAATTTTTT-TCTCTAAAAATACGAGTTTTAAAAAAAAAA
66 CAAAAAAAATTTTTTCTCTCTAAAAATACGAGTTTTAAAAAAAAAA
* *
112185997 TTTTTTGGTGCTGACCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTTCGATTTTTTT
1 TTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAA-TTCGAATTTTTT
**
112186062 TCAAAAAATTTTTTTTTTGCTCTCTAAAAATACGAGTTTTAAAAAAAAA
65 TCAAAAAA--AATTTTTT-CTCTCTAAAAATACGAGTTTTAAAAAAAAA
112186111 TTCATATTTT
Statistics
Matches: 207, Mismatches: 7, Indels: 19
0.89 0.03 0.08
Matches are distributed among these distances:
108 30 0.14
109 38 0.18
110 16 0.08
111 19 0.09
112 8 0.04
113 7 0.03
115 29 0.14
116 53 0.26
117 7 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (111 bp):
TTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAACCAAAAAAAAATTCGAATTTTTTT
CAAAAAAAATTTTTTCTCTCTAAAAATACGAGTTTTAAAAAAAAAA
Found at i:112186415 original size:112 final size:112
Alignment explanation
Indices: 112186248--112186573 Score: 489
Period size: 112 Copynumber: 2.9 Consensus size: 112
112186238 AAACTCCAAT
**
112186248 AACTCGTATTTTTAGAGAGC--AAAAATTTTTTTTTGAAAAAAATTCGAAATTTTTTTTTTGGTT
1 AACTCGTATTTTTAGAGAGCAAAAAAAAATTTTTTTGAAAAAAATTCGAAA--TTTTTTTTGGTT
*
112186311 GTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTTTTTTAA
64 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAA
*
112186360 AACTCGTATTTTTAGAGAGCAAAAAAAAATTTTTTTGAAAAAAATTCGAAATTTTTTTTTGTTGT
1 AACTCGTATTTTTAGAGAGCAAAAAAAAATTTTTTTGAAAAAAATTCGAAATTTTTTTTGGTTGT
* *
112186425 ACTGGGTGCCGGCCATTAACAGGCCAACACCCAAAATTTTTTTTTAA
66 ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAA
* *
112186472 AACTCGTATTTTTAGAGAGTAAAAAAAAATTTTTTTGCTCTAAAAAATTCG-AATTTTTTTTGGT
1 AACTCGTATTTTTAGAGAGCAAAAAAAAATTTTTTTG---AAAAAAATTCGAAATTTTTTTTGGT
* *
112186536 TG-ACTGGGTGCCGGCAATTGACAAGCCAGCACCCAAAA
63 TGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAA
112186574 AAATTTTTTT
Statistics
Matches: 196, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
112 113 0.58
113 32 0.16
114 41 0.21
115 10 0.05
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (112 bp):
AACTCGTATTTTTAGAGAGCAAAAAAAAATTTTTTTGAAAAAAATTCGAAATTTTTTTTGGTTGT
ACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATTTTTTTTTAA
Found at i:112188600 original size:22 final size:22
Alignment explanation
Indices: 112188556--112188600 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
112188546 AAAATATCTT
*
112188556 TAAAATAATATAATTTACTTTA
1 TAAAATAATATAATTTACATTA
*
112188578 TAAAATAAATATATTTTA-ATTA
1 TAAAAT-AATATAATTTACATTA
112188600 T
1 T
112188601 TACTCAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAAATAATATAATTTACATTA
Found at i:112189050 original size:38 final size:38
Alignment explanation
Indices: 112188989--112189062 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
112188979 AGACTTTTAC
*
112188989 ATTGTTATATAGACTCGACTAAATAGACTTATTTAAGT
1 ATTGTTATATAAACTCGACTAAATAGACTTATTTAAGT
* * * *
112189027 ATTGTTGTATAAACTTGATTAAATAGATTTATTTAA
1 ATTGTTATATAAACTCGACTAAATAGACTTATTTAA
112189063 ATTGAGTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (38 bp):
ATTGTTATATAAACTCGACTAAATAGACTTATTTAAGT
Found at i:112192947 original size:24 final size:23
Alignment explanation
Indices: 112192905--112192949 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 23
112192895 CGAATCAAAC
112192905 TTTTTTAAAAATATTTTTTATAA
1 TTTTTTAAAAATATTTTTTATAA
112192928 TTTTTTAAATAAT-TTATTTTAT
1 TTTTTTAAA-AATATT-TTTTAT
112192950 TAAACCAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTTAAAAATATTTTTTATAA
Found at i:112201099 original size:21 final size:21
Alignment explanation
Indices: 112201073--112201113 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
112201063 ATCTGCTCAA
* *
112201073 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
112201094 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
112201114 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:112209716 original size:9 final size:9
Alignment explanation
Indices: 112209702--112209726 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
112209692 ACAAAGAGCT
112209702 GCAGCTTTA
1 GCAGCTTTA
112209711 GCAGCTTTA
1 GCAGCTTTA
112209720 GCAGCTT
1 GCAGCTT
112209727 CATTTAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (9 bp):
GCAGCTTTA
Found at i:112210121 original size:66 final size:65
Alignment explanation
Indices: 112210013--112210144 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 65
112210003 TGCAGACTCA
* ** * *
112210013 AGTGAAGTGAACCCTTCTGAAGCTGATGATTCTGTAGGGGTTGCCAAAACCAATAAGGAAGACTT
1 AGTGAAGCGAACCCTTCTGAAGCTGATGATTCTCAAGAGGTTGCCAAAACCAACAAGGAAGA-TT
112210078 G
65 G
* * *
112210079 AGTGAAGCGAACCCTTCTGGAGCTGATGGTTCTCAAGAGGTTGCTAAAACCAACAAGGAAGATTG
1 AGTGAAGCGAACCCTTCTGAAGCTGATGATTCTCAAGAGGTTGCCAAAACCAACAAGGAAGATTG
112210144 A
1 A
112210145 AAACCGAAGG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
65 4 0.07
66 54 0.93
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (65 bp):
AGTGAAGCGAACCCTTCTGAAGCTGATGATTCTCAAGAGGTTGCCAAAACCAACAAGGAAGATTG
Found at i:112212448 original size:4 final size:4
Alignment explanation
Indices: 112212439--112212483 Score: 54
Period size: 4 Copynumber: 11.0 Consensus size: 4
112212429 GAAATGCACC
* **
112212439 TTTA TTTA TTTA TGTA TTTA TTTA TTTA TTTTA CATA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA
112212484 AAGAAAGGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:112221396 original size:14 final size:14
Alignment explanation
Indices: 112221377--112221407 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
112221367 CAGGTATGTT
*
112221377 TTTTGATATGTTTA
1 TTTTGACATGTTTA
112221391 TTTTGACATGTTTA
1 TTTTGACATGTTTA
112221405 TTT
1 TTT
112221408 ATTTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.03, G:0.13, T:0.65
Consensus pattern (14 bp):
TTTTGACATGTTTA
Found at i:112235143 original size:19 final size:18
Alignment explanation
Indices: 112235121--112235166 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
112235111 AATAATAAGG
*
112235121 ATAATATTAAAAATAAGTA
1 ATAATAATAAAAAT-AGTA
*
112235140 ATAATAATGAAAATAGTA
1 ATAATAATAAAAATAGTA
*
112235158 AGAATAATA
1 ATAATAATA
112235167 TGGTATTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (18 bp):
ATAATAATAAAAATAGTA
Found at i:112235154 original size:28 final size:28
Alignment explanation
Indices: 112235111--112235164 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
112235101 CATATACGTA
* *
112235111 AATAATAAGGATAATATTAAAAATAAGT
1 AATAATAAGGAAAATAGTAAAAATAAGT
* *
112235139 AATAATAATGAAAATAGTAAGAATAA
1 AATAATAAGGAAAATAGTAAAAATAA
112235165 TATGGTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.11, T:0.26
Consensus pattern (28 bp):
AATAATAAGGAAAATAGTAAAAATAAGT
Found at i:112235163 original size:18 final size:19
Alignment explanation
Indices: 112235130--112235165 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
112235120 GATAATATTA
*
112235130 AAAATAAGTAATAATAATG
1 AAAATAAGTAAGAATAATG
112235149 AAAAT-AGTAAGAATAAT
1 AAAATAAGTAAGAATAAT
112235166 ATGGTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (19 bp):
AAAATAAGTAAGAATAATG
Found at i:112235686 original size:22 final size:25
Alignment explanation
Indices: 112235638--112235687 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
112235628 AAACACGTGC
*
112235638 ATAATAATATACATACTATATATAA
1 ATAATAATATACATAATATATATAA
*
112235663 ATAAT-ATATGCATAATAT-TA-AA
1 ATAATAATATACATAATATATATAA
112235685 ATA
1 ATA
112235688 GAGACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 2 0.09
24 11 0.48
25 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAATAATATACATAATATATATAA
Found at i:112237132 original size:14 final size:14
Alignment explanation
Indices: 112237113--112237140 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
112237103 GGACATCAAT
112237113 ATATATATATACAC
1 ATATATATATACAC
112237127 ATATATATATACAC
1 ATATATATATACAC
112237141 CTCAGCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
ATATATATATACAC
Found at i:112251751 original size:18 final size:18
Alignment explanation
Indices: 112251719--112251753 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
112251709 ATGTTTTCTT
**
112251719 AAATGGAAATGGAAAATG
1 AAATGGAAAAAGAAAATG
112251737 AAATGGAAAAAGAAAAT
1 AAATGGAAAAAGAAAAT
112251754 ATGTGACCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.14
Consensus pattern (18 bp):
AAATGGAAAAAGAAAATG
Found at i:112253834 original size:21 final size:21
Alignment explanation
Indices: 112253811--112253849 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
112253801 GAGAATGAAA
*
112253811 AAAAAT-CACAAAAAAAAAGC
1 AAAAATGCAAAAAAAAAAAGC
112253831 AAAAATGCAAAAAAAAAAA
1 AAAAATGCAAAAAAAAAAA
112253850 AAGAACAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.79, C:0.10, G:0.05, T:0.05
Consensus pattern (21 bp):
AAAAATGCAAAAAAAAAAAGC
Found at i:112253836 original size:20 final size:20
Alignment explanation
Indices: 112253811--112253848 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
112253801 GAGAATGAAA
112253811 AAAAAT-CACAAAAAAAAAGC
1 AAAAATGCA-AAAAAAAAAGC
112253831 AAAAATGCAAAAAAAAAA
1 AAAAATGCAAAAAAAAAA
112253849 AAAGAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.79, C:0.11, G:0.05, T:0.05
Consensus pattern (20 bp):
AAAAATGCAAAAAAAAAAGC
Found at i:112255362 original size:18 final size:18
Alignment explanation
Indices: 112255330--112255364 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
112255320 ATGGTTTCTT
**
112255330 AAATGGAAATGGAAAATG
1 AAATGGAAAAAGAAAATG
112255348 AAATGGAAAAAGAAAAT
1 AAATGGAAAAAGAAAAT
112255365 ATGTGACCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.14
Consensus pattern (18 bp):
AAATGGAAAAAGAAAATG
Found at i:112268344 original size:10 final size:11
Alignment explanation
Indices: 112268316--112268348 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
112268306 AATTAAATTC
112268316 TAAAAGATAAA
1 TAAAAGATAAA
112268327 TAAAAGATAAA
1 TAAAAGATAAA
112268338 T-AAAGATAAA
1 TAAAAGATAAA
112268348 T
1 T
112268349 GCTAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (11 bp):
TAAAAGATAAA
Found at i:112269936 original size:32 final size:32
Alignment explanation
Indices: 112269900--112269964 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
112269890 TGTATGCATT
112269900 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
112269932 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
112269964 T
1 T
112269965 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:112271500 original size:26 final size:26
Alignment explanation
Indices: 112271448--112271500 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
112271438 TTTATAGCTT
*
112271448 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
112271474 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
112271500 T
1 T
112271501 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:112273123 original size:12 final size:12
Alignment explanation
Indices: 112273106--112273136 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
112273096 ACTCGAGGAA
112273106 GAGGCCGTGGTC
1 GAGGCCGTGGTC
112273118 GAGGCCGTGGTC
1 GAGGCCGTGGTC
112273130 GAGGCCG
1 GAGGCCG
112273137 AGGTAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:112278009 original size:32 final size:32
Alignment explanation
Indices: 112277973--112278033 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
112277963 TGTATGCATT
112277973 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
112278005 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
112278034 CATGGTAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.05, G:0.25, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:112279572 original size:26 final size:26
Alignment explanation
Indices: 112279520--112279572 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
112279510 TTTATAGTTT
*
112279520 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
112279546 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
112279572 T
1 T
112279573 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:112280193 original size:10 final size:11
Alignment explanation
Indices: 112280165--112280197 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
112280155 AATTAAATTC
112280165 TAAAAGATAAA
1 TAAAAGATAAA
112280176 TAAAAGATAAA
1 TAAAAGATAAA
112280187 T-AAAGATAAA
1 TAAAAGATAAA
112280197 T
1 T
112280198 GCTAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (11 bp):
TAAAAGATAAA
Found at i:112281780 original size:32 final size:32
Alignment explanation
Indices: 112281744--112281808 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
112281734 TGTATGCATT
112281744 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
112281776 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
112281808 T
1 T
112281809 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:112283323 original size:26 final size:26
Alignment explanation
Indices: 112283293--112283345 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
112283283 TTTATAGTTT
112283293 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
112283319 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
112283345 T
1 T
112283346 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:112286284 original size:79 final size:79
Alignment explanation
Indices: 112286188--112286358 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 79
112286178 ATATCCGGAC
* * **
112286188 TAAGATCCGAAGGCATTTGTGCAAGTTACTA-ATTCCGAGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAGTTCCGAAGGCATTTGTGCAAGTTACTATA-ACCGAGCTAAGTCCCGAAGGCATTGGAACGA
112286251 GTTA-CTAAATCCGGGT
65 G-TAGCTAAATCC-GGT
* * * *
112286267 TAAGTTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTTCCGAAGGCATTTGTGCAAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTGGAACGAG
*
112286332 TAGCTATATCCGGT
66 TAGCTAAATCCGGT
*
112286346 TAAATTCCGAAGG
1 TAAGTTCCGAAGG
112286359 TACGTGATTC
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 54 0.68
80 25 0.32
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTTCCGAAGGCATTTGTGCAAGTTACTATAACCGAGCTAAGTCCCGAAGGCATTGGAACGAG
TAGCTAAATCCGGT
Found at i:112286332 original size:40 final size:40
Alignment explanation
Indices: 112286141--112286325 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
112286131 TCGAATGATG
* * * *
112286141 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
112286181 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
112286221 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
112286260 TCCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
112286301 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
112286326 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:112288691 original size:23 final size:23
Alignment explanation
Indices: 112288655--112288704 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 23
112288645 TTAAATTTGA
* *
112288655 TTAAATTACTTAAATTAATTAATTT
1 TTAAATTAC-TAAA-CAAATAATTT
112288680 TTAAATTA-TAAACAAATAATTT
1 TTAAATTACTAAACAAATAATTT
112288702 TTA
1 TTA
112288705 TTCCTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 11 0.48
23 4 0.17
25 8 0.35
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAAATTACTAAACAAATAATTT
Found at i:112288964 original size:21 final size:20
Alignment explanation
Indices: 112288899--112288964 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
112288889 GAACCCCAAA
112288899 GTTTAAGGTTTGGGTTTTAAG
1 GTTTAAGGTTTGGG-TTTAAG
* * *
112288920 GTTCAAGGATTGGGTTT-GG
1 GTTTAAGGTTTGGGTTTAAG
112288939 AGTTTAAGGTTTAGGGTTTAAG
1 -GTTTAAGGTTT-GGGTTTAAG
112288961 GTTT
1 GTTT
112288965 TTAGTTATGG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 1 0.03
20 12 0.33
21 22 0.61
22 1 0.03
ACGTcount: A:0.20, C:0.02, G:0.35, T:0.44
Consensus pattern (20 bp):
GTTTAAGGTTTGGGTTTAAG
Found at i:112289534 original size:27 final size:27
Alignment explanation
Indices: 112289478--112289530 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
112289468 ATTACTTGAA
112289478 TTATAAATAAAATAACTGAAATTTATG
1 TTATAAATAAAATAACTGAAATTTATG
* *
112289505 TTATATATAAAAT-ATTGAAATTTATG
1 TTATAAATAAAATAACTGAAATTTATG
112289531 GTTAGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.42
Consensus pattern (27 bp):
TTATAAATAAAATAACTGAAATTTATG
Found at i:112291433 original size:9 final size:9
Alignment explanation
Indices: 112291396--112291552 Score: 60
Period size: 9 Copynumber: 16.8 Consensus size: 9
112291386 ACATGTGACA
*
112291396 AAAAATGAT
1 AAAAATTAT
112291405 AAAAAATTAAT
1 -AAAAATT-AT
* *
112291416 AATAGTTAT
1 AAAAATTAT
112291425 AAAAATTATT
1 AAAAATTA-T
**
112291435 AAATTTTAAT
1 AAAAATT-AT
112291445 AAAAA-TAT
1 AAAAATTAT
112291453 -AAAA-TATT
1 AAAAATTA-T
112291461 AAAAATTAT
1 AAAAATTAT
112291470 AAAAATCGTA-
1 AAAAAT--TAT
112291480 AAAGAATTAT
1 AAA-AATTAT
112291490 -AAAATATAT
1 AAAAAT-TAT
112291499 AGAAACA-TA-
1 A-AAA-ATTAT
112291508 AAAAATTAT
1 AAAAATTAT
*
112291517 -AAAATTTT
1 AAAAATTAT
* *
112291525 ATAAATTCGT
1 AAAAATT-AT
112291535 AAGAAAATTAT
1 -A-AAAATTAT
112291546 AAAAATT
1 AAAAATT
112291553 TATTATTTTA
Statistics
Matches: 113, Mismatches: 14, Indels: 41
0.67 0.08 0.24
Matches are distributed among these distances:
7 7 0.06
8 18 0.16
9 39 0.35
10 30 0.27
11 13 0.12
12 6 0.05
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:112291448 original size:19 final size:19
Alignment explanation
Indices: 112291406--112291462 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
112291396 AAAAATGATA
112291406 AAAAAT-TAATAATAGTT-AT
1 AAAAATATAA-AATA-TTAAT
* *
112291425 AAAAATTATTAAATTTTAAT
1 AAAAA-TATAAAATATTAAT
112291445 AAAAATATAAAATATTAA
1 AAAAATATAAAATATTAA
112291463 AAATTATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 18 0.58
20 11 0.35
21 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAATATAAAATATTAAT
Found at i:112291488 original size:56 final size:58
Alignment explanation
Indices: 112291426--112291554 Score: 142
Period size: 56 Copynumber: 2.3 Consensus size: 58
112291416 AATAGTTATA
* * *
112291426 AAAATTATTAAATTTTAATAAAAATATAAAATATTA-AAAATTATA-AAAATCGTAA-
1 AAAATTATTAAAATTTAATAAAAACATAAAAAATTATAAAATTATATAAAATCGTAAG
* * * *
112291481 AAGAATTA-TAAAATAT-ATAGAAACATAAAAAATTATAAAATTTTATAAATTCGTAAG
1 AA-AATTATTAAAATTTAATAAAAACATAAAAAATTATAAAATTATATAAAATCGTAAG
*
112291538 AAAATTATAAAAATTTA
1 AAAATTATTAAAATTTA
112291555 TTATTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
54 16 0.27
55 16 0.27
56 19 0.32
57 8 0.14
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (58 bp):
AAAATTATTAAAATTTAATAAAAACATAAAAAATTATAAAATTATATAAAATCGTAAG
Done.