Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 43 of 356
Found at i:14124725 original size:21 final size:21
Alignment explanation
Indices: 14124686--14124726 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14124676 CTCCTAAGTA
* **
14124686 TGGTCAAAATTGGGGGTCTCT
1 TGGTCAAAATTAGAAGTCTCT
14124707 TGGTCAAAATTAGAAGTCTC
1 TGGTCAAAATTAGAAGTCTC
14124727 AATTTTGGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (21 bp):
TGGTCAAAATTAGAAGTCTCT
Found at i:14127347 original size:23 final size:22
Alignment explanation
Indices: 14127298--14127361 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
14127288 CCTGATCAGT
*
14127298 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
* *
14127320 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT-AA
*
14127342 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
14127362 GATCGATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 15 0.44
22 4 0.12
23 15 0.44
ACGTcount: A:0.41, C:0.25, G:0.19, T:0.16
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTAA
Found at i:14127362 original size:23 final size:23
Alignment explanation
Indices: 14127298--14127363 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
14127288 CCTGATCAGT
14127298 ATACGACACATAAAGTGCCT-AA
1 ATACGACACATAAAGTGCCTGAA
** *
14127320 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTGAA
14127342 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
14127364 TCGATAAAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.41, C:0.24, G:0.20, T:0.15
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAA
Found at i:14127757 original size:15 final size:15
Alignment explanation
Indices: 14127732--14127789 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
14127722 TCATATATAT
14127732 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
14127748 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
14127763 AATAATTTCAATCAA
1 TATAAATTCAATCAA
14127778 TATAAATTCAAT
1 TATAAATTCAAT
14127790 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:14129104 original size:10 final size:10
Alignment explanation
Indices: 14129075--14129117 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
14129065 TTATATATAA
*
14129075 AATAAAATAA
1 AATAAAATAT
14129085 AATAAAATAT
1 AATAAAATAT
*
14129095 AATATAATAT
1 AATAAAATAT
*
14129105 AATTAAAACAT
1 AA-TAAAATAT
14129116 AA
1 AA
14129118 AATATCTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAAAATAT
Found at i:14129143 original size:8 final size:8
Alignment explanation
Indices: 14129130--14129158 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
14129120 TATCTTTATT
14129130 ATATAATA
1 ATATAATA
14129138 ATATAATA
1 ATATAATA
14129146 ATATAATA
1 ATATAATA
14129154 ATATA
1 ATATA
14129159 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:14132305 original size:17 final size:18
Alignment explanation
Indices: 14132283--14132316 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14132273 ATTTGAATAT
14132283 TAAATT-ACATATTAAAA
1 TAAATTAACATATTAAAA
*
14132300 TAAATTAATATATTAAA
1 TAAATTAACATATTAAA
14132317 TAATATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAATTAACATATTAAAA
Found at i:14133167 original size:18 final size:18
Alignment explanation
Indices: 14133140--14133190 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
14133130 ATAACAACAT
*
14133140 AATATGAAAATATAAAAA
1 AATATTAAAATATAAAAA
14133158 AATATTAAAATGATAAAAA
1 AATATTAAAAT-ATAAAAA
14133177 AATTATTGAAAATA
1 AA-TATT-AAAATA
14133191 AAACATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.34
19 9 0.31
20 5 0.17
21 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (18 bp):
AATATTAAAATATAAAAA
Found at i:14133191 original size:18 final size:18
Alignment explanation
Indices: 14133140--14133193 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
14133130 ATAACAACAT
14133140 AATA-TGAAAATATAAAAA
1 AATATTGAAAATA-AAAAA
14133158 AATATT-AAAATGATAAAAA
1 AATATTGAAAAT-A-AAAAA
14133177 AATTATTGAAAATAAAA
1 AA-TATTGAAAATAAAA
14133194 CATTTAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 9 0.28
19 13 0.41
20 5 0.16
21 5 0.16
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AATATTGAAAATAAAAAA
Found at i:14133577 original size:19 final size:18
Alignment explanation
Indices: 14133533--14133580 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
14133523 CTGTTTATGT
*
14133533 TTTTAATATTTTTATAAT
1 TTTTAATATTTTTATAAA
14133551 TTTCTAAT-TTTTTAATACAA
1 TTT-TAATATTTTT-ATA-AA
14133571 TTTTAATATT
1 TTTTAATATT
14133581 GTGTATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 8 0.32
19 11 0.44
20 6 0.24
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAATATTTTTATAAA
Found at i:14159035 original size:18 final size:18
Alignment explanation
Indices: 14159012--14159053 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14159002 AATATAGGTT
14159012 TTTAAGT-GTTAAAAGAAA
1 TTTAAGTGGTTAAAA-AAA
14159030 TTTAAGTGGTTAAAAAAA
1 TTTAAGTGGTTAAAAAAA
14159048 TGTTAA
1 T-TTAA
14159054 ATAGTTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.36
Consensus pattern (18 bp):
TTTAAGTGGTTAAAAAAA
Found at i:14159857 original size:19 final size:19
Alignment explanation
Indices: 14159835--14159897 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
14159825 TAATAAAAAT
14159835 TAAAAATAAATAAAATTTA
1 TAAAAATAAATAAAATTTA
* *
14159854 TAAAAATAATTAAATTTTA
1 TAAAAATAAATAAAATTTA
*
14159873 -AAAAATATA-AAAATTTA
1 TAAAAATAAATAAAATTTA
14159890 TTAAAAAT
1 -TAAAAAT
14159898 TTTAAAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 7 0.19
18 7 0.19
19 23 0.62
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAAATAAATAAAATTTA
Found at i:14159858 original size:18 final size:18
Alignment explanation
Indices: 14159826--14159895 Score: 63
Period size: 17 Copynumber: 3.9 Consensus size: 18
14159816 GGAAAAAAGT
*
14159826 AATAAAAATTA-AAAATA
1 AATAAAATTTATAAAATA
14159843 AATAAAATTTATAAAAATA
1 AATAAAATTTAT-AAAATA
* * *
14159862 ATTAAATTTTAAAAAATA
1 AATAAAATTTATAAAATA
*
14159880 TA-AAAATTTATTAAAA
1 AATAAAATTTA-TAAAA
14159896 ATTTTAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
17 17 0.40
18 10 0.24
19 15 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AATAAAATTTATAAAATA
Found at i:14159903 original size:29 final size:28
Alignment explanation
Indices: 14159865--14160001 Score: 98
Period size: 29 Copynumber: 4.7 Consensus size: 28
14159855 AAAAATAATT
*
14159865 AAATTTTAAAAAATATAAAAATTTATTAA
1 AAATTTTAAAAAATATAAAAAATTA-TAA
* *
14159894 AAATTTTAAAAATTGTAAAAAATTAT-A
1 AAATTTTAAAAAATATAAAAAATTATAA
* * *
14159921 AAATATATACAAATATAGAAAAAAGTTAT-A
1 AAAT-TTTA-AAAAATATAAAAAA-TTATAA
** *
14159951 AAATTTTATAAAGTTGTAAGAAAATTATAA
1 AAATTTTA-AAAAATATAA-AAAATTATAA
* *
14159981 AAAATGTAAAGAAATATAAAA
1 AAATTTTAAA-AAATATAAAA
14160002 TTCGTAAAAA
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
27 5 0.06
28 4 0.05
29 49 0.59
30 25 0.30
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (28 bp):
AAATTTTAAAAAATATAAAAAATTATAA
Found at i:14159904 original size:19 final size:19
Alignment explanation
Indices: 14159845--14159929 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
14159835 TAAAAATAAA
14159845 TAAAATTTAT-AAAAATAAT
1 TAAAATTTATAAAAAAT-AT
14159864 T-AAATTT-TAAAAAATAT
1 TAAAATTTATAAAAAATAT
* * *
14159881 AAAAATTTATTAAAAATTT
1 TAAAATTTATAAAAAATAT
* *
14159900 TAAAAATTGTAAAAAAT-T
1 TAAAATTTATAAAAAATAT
*
14159918 ATAAAATATATA
1 -TAAAATTTATA
14159930 CAAATATAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
17 3 0.06
18 19 0.37
19 30 0.58
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (19 bp):
TAAAATTTATAAAAAATAT
Found at i:14160021 original size:9 final size:9
Alignment explanation
Indices: 14159827--14160026 Score: 77
Period size: 9 Copynumber: 21.2 Consensus size: 9
14159817 GAAAAAAGTA
14159827 ATAAAAA-T
1 ATAAAAATT
*
14159835 -TAAAAATAA
1 ATAAAAAT-T
*
14159844 ATAAAATTT
1 ATAAAAATT
*
14159853 ATAAAAATA
1 ATAAAAATT
*
14159862 AT-TAAATT
1 ATAAAAATT
* *
14159870 TTAAAAAAT
1 ATAAAAATT
14159879 ATAAAAATTT
1 ATAAAAA-TT
14159889 ATTAAAAATT
1 A-TAAAAATT
*
14159899 TTAAAAATT
1 ATAAAAATT
*
14159908 GTAAAAAATT
1 AT-AAAAATT
14159918 AT-AAAATAT
1 ATAAAAAT-T
*
14159927 ATACAAATAT
1 ATAAAAAT-T
*
14159937 AGAAAAAAGTT
1 A-TAAAAA-TT
14159948 AT-AAAATT
1 ATAAAAATT
* *
14159956 TTATAAAGTT
1 ATA-AAAATT
*
14159966 GTAAGAAAATT
1 AT-A-AAAATT
*
14159977 ATAAAAAAT
1 ATAAAAATT
* *
14159986 GTAAAGAAAT
1 ATAAA-AATT
*
14159996 ATAAAATTCGT
1 ATAAAAAT--T
*
14160007 AAAAAAATT
1 ATAAAAATT
14160016 ATAAAAATT
1 ATAAAAATT
14160025 AT
1 AT
14160027 CGTACTAAAA
Statistics
Matches: 142, Mismatches: 33, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
7 6 0.04
8 13 0.09
9 56 0.39
10 40 0.28
11 26 0.18
12 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:14160021 original size:10 final size:10
Alignment explanation
Indices: 14159865--14160026 Score: 67
Period size: 10 Copynumber: 16.7 Consensus size: 10
14159855 AAAAATAATT
*
14159865 AAATTTTAAA
1 AAATTATAAA
14159875 AAA-TATAAA
1 AAATTATAAA
* *
14159884 AATTTATTAA
1 AAATTATAAA
*
14159894 AAATT-TTAA
1 AAATTATAAA
*
14159903 AAATTGTAAA
1 AAATTATAAA
14159913 AAATTATAAA
1 AAATTATAAA
* *
14159923 ATA-TAT-AC
1 AAATTATAAA
*
14159931 AAATATAGAAA
1 AAAT-TATAAA
14159942 AAAGTTAT--A
1 AAA-TTATAAA
* *
14159951 AAATTTTATA
1 AAATTATAAA
* *
14159961 AAGTTGTAAGA
1 AAATTATAA-A
14159972 AAATTATAAA
1 AAATTATAAA
*
14159982 AAATGTA-AAG
1 AAAT-TATAAA
14159992 AAA-TAT--A
1 AAATTATAAA
*
14159999 AAATTCGTAAAA
1 AAATT-AT-AAA
14160011 AAATTAT-AA
1 AAATTATAAA
14160020 AAATTAT
1 AAATTAT
14160027 CGTACTAAAA
Statistics
Matches: 114, Mismatches: 22, Indels: 33
0.67 0.13 0.20
Matches are distributed among these distances:
7 3 0.03
8 9 0.08
9 33 0.29
10 45 0.39
11 17 0.15
12 7 0.06
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (10 bp):
AAATTATAAA
Found at i:14173122 original size:23 final size:22
Alignment explanation
Indices: 14173070--14173122 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
14173060 TCTACGTCTT
*
14173070 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
14173092 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
14173115 TTTCTTTT
1 TTTCTTTT
14173123 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:14178576 original size:38 final size:38
Alignment explanation
Indices: 14178517--14178722 Score: 133
Period size: 38 Copynumber: 4.9 Consensus size: 38
14178507 TTTCAAATTA
* *
14178517 ACATGTATAACTGTGGCATATCTACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
14178555 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
*
14178596 GAATCGATATATGTAACCGTGGCATATCCACTTAGCACTACATTACATGTAT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCAC--C---AC--GT-T
* * * * *
14178648 CAATATGTGTAATCATGGTATATCCACTTAGCACCACGTT
1 --ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
14178688 ACACGTATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC
14178723 ATTTTTCCAT
Statistics
Matches: 133, Mismatches: 19, Indels: 32
0.72 0.10 0.17
Matches are distributed among these distances:
38 62 0.47
39 1 0.01
40 1 0.01
41 3 0.02
43 3 0.02
44 1 0.01
45 3 0.02
46 1 0.01
47 24 0.18
48 22 0.17
49 1 0.01
50 3 0.02
52 6 0.05
53 1 0.01
54 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:14178616 original size:47 final size:48
Alignment explanation
Indices: 14178562--14178690 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
14178552 GTTACATGTT
*
14178562 TAACCGTGGTATATCCACTTAGCACCACGTTA-ATGAATCGATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * * *
14178609 TAACCGTGGCATATCCACTTAGCACTACATTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* *
14178657 TAATCATGGTATATCCACTTAGCACCACGTTACA
1 TAACCGTGGTATATCCACTTAGCACCACGTTACA
14178691 CGTATAACCG
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
47 29 0.41
48 41 0.59
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:14193033 original size:19 final size:19
Alignment explanation
Indices: 14193011--14193052 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14193001 AAAAAAGCTG
14193011 AAAAAA-TTGAAAACTGAAA
1 AAAAAAGTTG-AAACTGAAA
*
14193030 AAAAAAGTTGAATCTGAAA
1 AAAAAAGTTGAAACTGAAA
14193049 AAAA
1 AAAA
14193053 TTTGAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.17
Consensus pattern (19 bp):
AAAAAAGTTGAAACTGAAA
Found at i:14195430 original size:22 final size:23
Alignment explanation
Indices: 14195405--14195450 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14195395 CAACCAAATC
14195405 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
14195427 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
14195450 A
1 A
14195451 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:14195456 original size:23 final size:23
Alignment explanation
Indices: 14195412--14195456 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14195402 ATCAATTCAA
*
14195412 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
14195435 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
14195457 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:14203169 original size:22 final size:23
Alignment explanation
Indices: 14203144--14203189 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14203134 CAACCAAATC
14203144 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
14203166 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
14203189 A
1 A
14203190 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:14203195 original size:23 final size:23
Alignment explanation
Indices: 14203151--14203195 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14203141 ATCAATTCAA
*
14203151 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
14203174 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
14203196 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:14206218 original size:72 final size:72
Alignment explanation
Indices: 14206101--14206245 Score: 227
Period size: 72 Copynumber: 2.0 Consensus size: 72
14206091 ATCTGCCTCT
* *
14206101 TGACGAGACCGAGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCTGAATGTG
1 TGACGAGACCGAGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATG
14206166 AATACGA
66 AATACGA
* * * * *
14206173 TGACGAGCCCGGGAAATTGTCATTGCTCTGCAAATCCGGATGATAAGAAGTATCAGCCGAATATG
1 TGACGAGACCGAGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATG
14206238 AATACGA
66 AATACGA
14206245 T
1 T
14206246 CACTCAGACT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (72 bp):
TGACGAGACCGAGAAATAGTCATTGCCCGGCAAATCCGGATGATAAGAAGTATCAGCCGAATATG
AATACGA
Found at i:14208854 original size:151 final size:151
Alignment explanation
Indices: 14208355--14209341 Score: 1457
Period size: 152 Copynumber: 6.5 Consensus size: 151
14208345 ATTTTTTATT
* ** **
14208355 CCGTGATTTTGGCCCTTTGTTTGTATTTTTTGAATTTTTGGATTTTTATTTTTTAAAATATACTA
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGA-TTTTATTTTTTAAAATATACTA
*
14208420 TTTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATATTT
65 TTTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATGTTT
14208485 TTTATATTAATTTAGTAAATAA
130 TTTATATTAATTTAGTAAATAA
* *
14208507 CTGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCGGATTTTATTTTTTAAAATATACTAT
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
* * * *
14208572 TTTCATACTTTATTTTTTTCTATTATTTTAGTACATAATGTTTTAAATGTATTATTTTCGTGTTT
66 TTTCATATTTTA-TTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATG-TT
14208637 TTTTATATTAATTTAGTAAATAA
129 TTTTATATTAATTTAGTAAATAA
* *
14208660 CCCTGATTTTGGCCCTTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
* * *
14208725 TGTCATATTTTATTTTTTATACTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATATTTT
66 TTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATGTTTT
14208790 TTATATTAATTTAGTAAATAA
131 TTATATTAATTTAGTAAATAA
* * *
14208811 CCGTGATTTTAGCCCTTTGTTTGTATTTTTAAAATTTTTAGATTTTATTTTTTAAAAATATACTA
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTT-AAAATATACTA
* *
14208876 TTTTCATATTTTATTTTTTATATTATTTTAGTACATAATATTT-ATAATGTATTATTTTCGTGTT
65 TTTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCA-AATGTATTATTTTCATGTT
14208940 TTTTATATTAATTTAGTAAATAA
129 TTTTATATTAATTTAGTAAATAA
* *
14208963 ACGTTATTTTGGCCATTTGTTTGTATTTTTAAAAATTTT-AGATTTTATTTTTT-AAATATACTA
1 CCGTGATTTTGGCCATTTGTTTGTATTTTT-AAAATTTTCAGATTTTATTTTTTAAAATATACTA
* * * *
14209026 TTTTCGTATTTAATTTTTAATATTATTTTAGTAC--AATGTTTGAAATGTATTATTTTCATGGGG
65 TTTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCAT---G
*
14209089 TTTTATATATT--TTTAGTAAATAA
127 TTTTTTATATTAATTTAGTAAATAA
* * * *
14209112 CCGTGATTTTGGCCATTTGTTTGTACTTTTAAAATTTTAAAATTTTATTTTTTAAAATATATTAT
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
** *
14209177 TTTTGTATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCGTGTTTT
66 TTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATGTTTT
*
14209242 TTATATTAATTTAATAAATAA
131 TTATATTAATTTAGTAAATAA
* * * *
14209263 ACGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCGGATTTTATTTTTTTAAATTTACTAT
1 CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
*
14209328 TTTCGTACTTTTAT
66 TTTCATA-TTTTAT
14209342 ATTATTTTAG
Statistics
Matches: 759, Mismatches: 60, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
148 29 0.04
149 64 0.08
150 81 0.11
151 195 0.26
152 286 0.38
153 104 0.14
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.57
Consensus pattern (151 bp):
CCGTGATTTTGGCCATTTGTTTGTATTTTTAAAATTTTCAGATTTTATTTTTTAAAATATACTAT
TTTCATATTTTATTTTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTTCATGTTTT
TTATATTAATTTAGTAAATAA
Found at i:14209166 original size:15 final size:17
Alignment explanation
Indices: 14209146--14209180 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
14209136 ACTTTTAAAA
14209146 TTTTAAAAT-T-TTATT
1 TTTTAAAATATATTATT
14209161 TTTTAAAATATATTATT
1 TTTTAAAATATATTATT
14209178 TTT
1 TTT
14209181 GTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 1 0.06
17 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTAAAATATATTATT
Found at i:14209201 original size:12 final size:13
Alignment explanation
Indices: 14209169--14209204 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14209159 TTTTTTAAAA
14209169 TATATTATTTTTG
1 TATATTATTTTTG
*
14209182 TATTTTATTTTT-
1 TATATTATTTTTG
14209194 TATATTATTTT
1 TATATTATTTT
14209205 AGTACATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (13 bp):
TATATTATTTTTG
Found at i:14209899 original size:15 final size:15
Alignment explanation
Indices: 14209862--14209912 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
14209852 ACCAACCGAA
*
14209862 TCCTTCTCCTTCGTC
1 TCCTTCTTCTTCGTC
*
14209877 TCCTTCTTCTTCTTC
1 TCCTTCTTCTTCGTC
14209892 TCCTTCTTTCTT-GTC
1 TCCTTC-TTCTTCGTC
*
14209907 TTCTTC
1 TCCTTC
14209913 CCGAAATGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
15 26 0.84
16 5 0.16
ACGTcount: A:0.00, C:0.39, G:0.04, T:0.57
Consensus pattern (15 bp):
TCCTTCTTCTTCGTC
Found at i:14210102 original size:16 final size:15
Alignment explanation
Indices: 14210065--14210105 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 15
14210055 TTTCAGATTC
14210065 AGCTTTTTTT--T-T
1 AGCTTTTTTTACTAT
14210077 AGCTTTTTTTACTAT
1 AGCTTTTTTTACTAT
14210092 AGCTGTTTTTTACT
1 AGCT-TTTTTTACT
14210106 GTAATTGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.40
14 1 0.04
15 5 0.20
16 9 0.36
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.63
Consensus pattern (15 bp):
AGCTTTTTTTACTAT
Found at i:14215425 original size:42 final size:42
Alignment explanation
Indices: 14215364--14215527 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 42
14215354 CTTCGTTTTC
**
14215364 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACAT-A
* *
14215407 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
* * *
14215448 TCGATGCTATAGCCCAGCTGTGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC---AT--C-T-TCACATA
*
14215497 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
14215528 GAATCACATA
Statistics
Matches: 102, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.02
42 61 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 35 0.34
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATCTTCACATA
Found at i:14215509 original size:49 final size:48
Alignment explanation
Indices: 14215434--14215539 Score: 167
Period size: 49 Copynumber: 2.2 Consensus size: 48
14215424 TATGGTCTTA
* * *
14215434 CACATATTCATATATCGATGCTATAGCCCAGCTGTGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
14215484 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
14215532 CACATATC
1 CACATATC
14215540 TCACTGATGC
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
48 11 0.21
49 36 0.68
50 6 0.11
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:14218627 original size:31 final size:31
Alignment explanation
Indices: 14218592--14218709 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
14218582 CTTGTCACTT
*
14218592 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
14218623 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
14218654 GTAGCTGGAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
14218685 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
14218710 TGTCATTGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:14221011 original size:16 final size:16
Alignment explanation
Indices: 14220990--14221051 Score: 106
Period size: 16 Copynumber: 3.9 Consensus size: 16
14220980 GTTGTATTGT
14220990 AATAGAGGCGTAATGG
1 AATAGAGGCGTAATGG
*
14221006 AATAGAGGTGTAATGG
1 AATAGAGGCGTAATGG
14221022 AATAGAGGCGTAATGG
1 AATAGAGGCGTAATGG
*
14221038 AATAGAGACGTAAT
1 AATAGAGGCGTAAT
14221052 AGCAATTCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.40, C:0.05, G:0.34, T:0.21
Consensus pattern (16 bp):
AATAGAGGCGTAATGG
Found at i:14221088 original size:45 final size:44
Alignment explanation
Indices: 14221031--14221127 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
14221021 GAATAGAGGC
14221031 GTAATGGAATAGAGACGTAATAGCAATTCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGACGTAATAG-AATTC-ATGTGTTTGGTTGAAT
* * *
14221076 GTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAAT
*
14221120 GGAATGGA
1 GTAATGGA
14221128 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 24 0.51
45 22 0.47
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (44 bp):
GTAATGGAATAGAGACGTAATAGAATTCATGTGTTTGGTTGAAT
Found at i:14221305 original size:18 final size:17
Alignment explanation
Indices: 14221282--14221318 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
14221272 AATTATTATT
14221282 AAATATAT-A-TTAATTA
1 AAATATATAATTTAA-TA
14221298 AAATATATAATTTAATA
1 AAATATATAATTTAATA
14221315 AAAT
1 AAAT
14221319 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 7 0.37
18 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATATAATTTAATA
Found at i:14221312 original size:14 final size:15
Alignment explanation
Indices: 14221275--14221314 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
14221265 TTAACATAAT
14221275 TATT-ATTAAATATA
1 TATTAATTAAATATA
14221289 TATTAATTAAA-ATA
1 TATTAATTAAATATA
*
14221303 TA-TAATTTAATA
1 TATTAATTAAATA
14221315 AAATTCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 7 0.30
14 10 0.43
15 6 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTAATTAAATATA
Found at i:14221419 original size:101 final size:102
Alignment explanation
Indices: 14221302--14221520 Score: 386
Period size: 101 Copynumber: 2.2 Consensus size: 102
14221292 TAATTAAAAT
* *
14221302 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTATTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATACTCTTATATGAATTTACTAAAATCATAATATAT
* * *
14221367 AATACTAT-AAATATAATTTAAAGTTATTATTATTAA
66 AATAATATAAAATATAATTTAAAATAATTATTATTAA
14221403 ATATAATTTAATAAAATTCTTAATATTAAATACTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATACTCTTATATGAATTTACTAAAATCATAATATAT
14221468 AATAATATAAAATATAATTTAAAATAATTATTATTAA
66 AATAATATAAAATATAATTTAAAATAATTATTATTAA
14221505 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
14221521 ATATATAATT
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
101 70 0.62
102 42 0.38
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (102 bp):
ATATAATTTAATAAAATTCTTAATATTAAATACTCTTATATGAATTTACTAAAATCATAATATAT
AATAATATAAAATATAATTTAAAATAATTATTATTAA
Found at i:14221652 original size:61 final size:59
Alignment explanation
Indices: 14221461--14221652 Score: 156
Period size: 59 Copynumber: 3.3 Consensus size: 59
14221451 CTAAAATCAT
14221461 AATATATAA--TAATAT-AAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAA
1 AATATATAATTTAATATAAAAATATAATTT--AA-AATTATTATTAAATATAATTTAATAAA
* * * *
14221520 AATATATAATTT-A-ATAAAATTCTTAATATT-AAA-TATTCTT--ATATGAATTTACT-AA
1 AATATATAATTTAATATAAAAAT-ATAAT-TTAAAATTATTATTAAATAT-AATTTAATAAA
*
14221575 AATCATA-ATATATAATACTACAAAATATAATTTAAAATTATTATTAAATATAA-TTAGATAAA
1 AAT-ATATA-ATTTAATA-TA-AAAATATAATTTAAAATTATTATTAAATATAATTTA-ATAAA
14221637 AATATATAATTTAATA
1 AATATATAATTTAATA
14221653 AAATTTTTAA
Statistics
Matches: 104, Mismatches: 10, Indels: 36
0.69 0.07 0.24
Matches are distributed among these distances:
55 10 0.10
56 13 0.12
57 7 0.07
58 5 0.05
59 21 0.20
60 18 0.17
61 18 0.17
62 12 0.12
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (59 bp):
AATATATAATTTAATATAAAAATATAATTTAAAATTATTATTAAATATAATTTAATAAA
Found at i:14221674 original size:117 final size:119
Alignment explanation
Indices: 14221403--14221711 Score: 543
Period size: 117 Copynumber: 2.6 Consensus size: 119
14221393 TTATTATTAA
*
14221403 ATATAATTTAATAAAATTCTTAATATTAAATACTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
* *
14221468 AATAATATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAAT
66 AATACTACAAAATATAATTT-AAATAATTATTATTAAATATAATTTAATAAAAAT
14221523 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
14221588 AATACTACAAAATATAATTT-AA-AATTATTATTAAATATAA-TTAGATAAAAAT
66 AATACTACAAAATATAATTTAAATAATTATTATTAAATATAATTTA-ATAAAAAT
*
14221640 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
14221705 AATACTA
66 AATACTA
14221712 AAATCATAAT
Statistics
Matches: 184, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
116 3 0.02
117 97 0.53
118 2 0.01
120 82 0.45
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (119 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAT
AATACTACAAAATATAATTTAAATAATTATTATTAAATATAATTTAATAAAAAT
Found at i:14221730 original size:23 final size:21
Alignment explanation
Indices: 14221686--14221726 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
14221676 TATATGAATT
14221686 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATATAA
14221707 TACTAAAATCATAATATATA
1 TACTAAAATCATAATATATA
14221727 TAATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (21 bp):
TACTAAAATCATAATATATAA
Found at i:14229398 original size:51 final size:51
Alignment explanation
Indices: 14229300--14229415 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 51
14229290 CTCAAACTTA
* * * * *
14229300 CTTCATACTTCATCCGGAATTATTACCTTGTTGTTCTAACTTCAACAAGAG
1 CTTCATATTTTATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
* * * *
14229351 CTTTATATTTTATCCAGAATAATTACTTTGTTGCTCTAGCTTTAACAAGAG
1 CTTCATATTTTATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
14229402 CTTCATATTTTATC
1 CTTCATATTTTATC
14229416 TGGATAACTT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (51 bp):
CTTCATATTTTATCCAGAATAATTACCTTGTTGCTCTAACTTCAACAAGAG
Found at i:14233894 original size:36 final size:36
Alignment explanation
Indices: 14233824--14233895 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
14233814 TGTTTTATAA
* *
14233824 AAAAAATTGTATACTAAATTTTATTATACCCACAAT
1 AAAAAATTGTATACTAAATGTTATTATACACACAAT
*
14233860 AAAAAATTGTATTCTAAATGTTATCT-TACACACAAT
1 AAAAAATTGTATACTAAATGTTAT-TATACACACAAT
14233896 TTGGATGAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
36 31 0.97
37 1 0.03
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (36 bp):
AAAAAATTGTATACTAAATGTTATTATACACACAAT
Found at i:14235006 original size:12 final size:12
Alignment explanation
Indices: 14234989--14235016 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14234979 ACATCGACAA
14234989 AGAAAGTTAACG
1 AGAAAGTTAACG
14235001 AGAAAGTTAACG
1 AGAAAGTTAACG
14235013 AGAA
1 AGAA
14235017 GTAATCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.07, G:0.25, T:0.14
Consensus pattern (12 bp):
AGAAAGTTAACG
Found at i:14256095 original size:6 final size:6
Alignment explanation
Indices: 14256071--14256105 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
14256061 CCGGGCGCTT
* *
14256071 CTTGTC CTTATC TTTGTC CTTGTC CTTGTC CTTGT
1 CTTGTC CTTGTC CTTGTC CTTGTC CTTGTC CTTGT
14256106 TAGCGGCGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.03, C:0.29, G:0.14, T:0.54
Consensus pattern (6 bp):
CTTGTC
Found at i:14258887 original size:21 final size:21
Alignment explanation
Indices: 14258861--14258900 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14258851 AACGGAACCA
14258861 CTGATGTGGCAAGTTAACTAG
1 CTGATGTGGCAAGTTAACTAG
*
14258882 CTGATGTGGCCAGTTAACT
1 CTGATGTGGCAAGTTAACT
14258901 TACCACGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (21 bp):
CTGATGTGGCAAGTTAACTAG
Found at i:14258983 original size:3 final size:3
Alignment explanation
Indices: 14258975--14258999 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
14258965 TTAATAACAG
14258975 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
14259000 TAGACTGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:14259983 original size:36 final size:36
Alignment explanation
Indices: 14259935--14260014 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
14259925 GGAGGTCCTT
14259935 AAATGGAAATTAGACCATTGGTTAAGTTAGTGGACAA
1 AAAT-GAAATTAGACCATTGGTTAAGTTAGTGGACAA
14259972 AAATGAAATTAGACCATTGGTTAAGTTAGTGGACAA
1 AAATGAAATTAGACCATTGGTTAAGTTAGTGGACAA
14260008 AAATGAA
1 AAATGAA
14260015 CATAGTTAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (36 bp):
AAATGAAATTAGACCATTGGTTAAGTTAGTGGACAA
Found at i:14260793 original size:9 final size:9
Alignment explanation
Indices: 14260777--14260831 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
14260767 TTAATAATAA
14260777 AAAT-AAAG
1 AAATAAAAG
14260785 AAATAAAAG
1 AAATAAAAG
*
14260794 AAATGAAAG
1 AAATAAAAG
14260803 AAATAAAA-
1 AAATAAAAG
*
14260811 AAGAGAAAA-
1 AA-ATAAAAG
*
14260820 AAAAAAAAG
1 AAATAAAAG
14260829 AAA
1 AAA
14260832 ACGAAACAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
8 11 0.28
9 29 0.73
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (9 bp):
AAATAAAAG
Found at i:14260823 original size:13 final size:13
Alignment explanation
Indices: 14260799--14260832 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14260789 AAAAGAAATG
*
14260799 AAAGAAATAAAAA
1 AAAGAAAAAAAAA
*
14260812 AGAGAAAAAAAAA
1 AAAGAAAAAAAAA
14260825 AAAGAAAA
1 AAAGAAAA
14260833 CGAAACAGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (13 bp):
AAAGAAAAAAAAA
Found at i:14262097 original size:18 final size:18
Alignment explanation
Indices: 14262076--14262112 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14262066 TAAATAATTA
*
14262076 ACTGTTACAGAATAAATG
1 ACTGATACAGAATAAATG
*
14262094 ACTGATACTGAATAAATG
1 ACTGATACAGAATAAATG
14262112 A
1 A
14262113 ATATTACTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (18 bp):
ACTGATACAGAATAAATG
Found at i:14262120 original size:18 final size:19
Alignment explanation
Indices: 14262080--14262122 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
14262070 TAATTAACTG
* *
14262080 TTACAGAATAAATGACTGA
1 TTACTGAATAAATGAATGA
14262099 -TACTGAATAAATGAAT-A
1 TTACTGAATAAATGAATGA
14262116 TTACTGA
1 TTACTGA
14262123 TTAACCGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.30
Consensus pattern (19 bp):
TTACTGAATAAATGAATGA
Found at i:14264138 original size:42 final size:42
Alignment explanation
Indices: 14263977--14264134 Score: 165
Period size: 42 Copynumber: 3.8 Consensus size: 42
14263967 TAGGGTTACC
* * * *
14263977 GAGATTACTTGTAAGACCATATCTGGGATATGACATCTATAT
1 GAGATTTCGTGTAAGACCATATCTAGGATATGACATCGATAT
* *
14264019 GAGATTTCGTGTAAGACCATATCTAGGATTTAACATCGATAT
1 GAGATTTCGTGTAAGACCATATCTAGGATATGACATCGATAT
* * * * *
14264061 GAGACTTCGTGTAAGACTATA-CTAGGCTATTGGCATCGATAC
1 GAGATTTCGTGTAAGACCATATCTAGGATA-TGACATCGATAT
** * *
14264103 GAGATTTTATGTAAAACCATATCTGGGATATG
1 GAGATTTCGTGTAAGACCATATCTAGGATATG
14264135 GCATTGGTAT
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 6 0.06
42 82 0.87
43 6 0.06
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (42 bp):
GAGATTTCGTGTAAGACCATATCTAGGATATGACATCGATAT
Found at i:14265836 original size:43 final size:43
Alignment explanation
Indices: 14265788--14265870 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
14265778 AGTATCAAGC
14265788 ACACGGGCAT-GAGACAC-AGTCGTGTGTCTCAGCCGTGTGAATG
1 ACAC-GGCATCGAGACACGAG-CGTGTGTCTCAGCCGTGTGAATG
* * **
14265831 ACACGGCTTCGGGACACGAGCGTGTGTCTTGGCCGTGTGA
1 ACACGGCATCGAGACACGAGCGTGTGTCTCAGCCGTGTGA
14265871 TTTCAATTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 4 0.12
43 28 0.82
44 2 0.06
ACGTcount: A:0.19, C:0.24, G:0.35, T:0.22
Consensus pattern (43 bp):
ACACGGCATCGAGACACGAGCGTGTGTCTCAGCCGTGTGAATG
Found at i:14267900 original size:43 final size:43
Alignment explanation
Indices: 14267847--14267988 Score: 171
Period size: 43 Copynumber: 3.3 Consensus size: 43
14267837 CGAGATGTAT
* *
14267847 TTACATGTAAGACCATGTCTGGGACATTGGCATTA-TAT-TGAGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATAT--GA
14267890 TTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATATGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATATGA
* * * * *
14267933 TTTCGTGTAAGACCATGTCTGAGACATTGGTATCAATATGTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATATGA
* *
14267976 TAACATGTAAGAC
1 TTACGTGTAAGAC
14267989 TATATCTAGG
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 83 0.95
44 3 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCATTATATGA
Found at i:14268399 original size:68 final size:68
Alignment explanation
Indices: 14268290--14268425 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
14268280 TTTCCACGTT
*
14268290 CAAGTCTCGTATTCAAGTCATCCGGATCTTTATAAAGAAATTTGATCGTCGTTTTCATTTATTTC
1 CAAGTCTCGTATTCAAGTCATCCGGATCTTTATAAAGAAATTTGACCGTCGTTTTCATTTATTTC
14268355 ATG
66 ATG
14268358 CAAGTCTCGTATTCAAGTCATCCGGATCTTTATAAAGAAATTTGACCGTCGTTTTCATTTATTTC
1 CAAGTCTCGTATTCAAGTCATCCGGATCTTTATAAAGAAATTTGACCGTCGTTTTCATTTATTTC
14268423 ATG
66 ATG
14268426 TTATAATACA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.40
Consensus pattern (68 bp):
CAAGTCTCGTATTCAAGTCATCCGGATCTTTATAAAGAAATTTGACCGTCGTTTTCATTTATTTC
ATG
Found at i:14273638 original size:7 final size:7
Alignment explanation
Indices: 14273626--14273650 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14273616 CAAGGTGTTT
14273626 TGAATTG
1 TGAATTG
14273633 TGAATTG
1 TGAATTG
14273640 TGAATTG
1 TGAATTG
14273647 TGAA
1 TGAA
14273651 GACAAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (7 bp):
TGAATTG
Found at i:14280757 original size:123 final size:121
Alignment explanation
Indices: 14280538--14280781 Score: 416
Period size: 123 Copynumber: 2.0 Consensus size: 121
14280528 AGGCATGTTC
*
14280538 CTGGGTTTTAAAAGTGATAAATCCTACTCTTTTAAATATTTTTGTATGTAATCTGATCTAGTAGA
1 CTGGGTTTTAAAAGTGATAAATCCTACTCTTTTAAATATTTTTGTATGTAATCTGATCCAGTAGA
*
14280603 CTACTAGCTTTTGTAATTCTCGTGTCCTTGATGTGGAAATTTTCGTCCAGGTAAATAA
66 CTACTAGCTTTTGTAATTCTCGTGTCCTTGATGTGGAAA-ATT-GTCCAGGTAAATAA
* *
14280661 CTGGGTTTTAGAAGTGATAAATCCTACTCTTTTAAATATTTTTGTGTGTAATCTGATCCAGTAGA
1 CTGGGTTTTAAAAGTGATAAATCCTACTCTTTTAAATATTTTTGTATGTAATCTGATCCAGTAGA
* *
14280726 CTACTAGCTTTTGTAGTTCTTGTGTCCTTGATGTGGAAAATTGTCCAGGTAAATAA
66 CTACTAGCTTTTGTAATTCTCGTGTCCTTGATGTGGAAAATTGTCCAGGTAAATAA
14280782 AAATATCATT
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
121 14 0.12
122 2 0.02
123 99 0.86
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (121 bp):
CTGGGTTTTAAAAGTGATAAATCCTACTCTTTTAAATATTTTTGTATGTAATCTGATCCAGTAGA
CTACTAGCTTTTGTAATTCTCGTGTCCTTGATGTGGAAAATTGTCCAGGTAAATAA
Found at i:14289292 original size:148 final size:143
Alignment explanation
Indices: 14289024--14289303 Score: 443
Period size: 148 Copynumber: 1.9 Consensus size: 143
14289014 ATGGAAGTAA
**
14289024 CATTCCAAATGTTTTAAAACTCCCATTTTAAGTCTCATTAGTCTTTTTTGGAAGTTATAAATTAA
1 CATTCCAAATGTTTTAAAACTCCCATTTTAAGTCTCACCAGTCTTTTTTGGAAGTTATAAATTAA
* *
14289089 TGTGTTTACTATGAGAAATTATTTTATGGACTCTTTCCACCACATCATCCATAGTCCTGCCTAAT
66 TGTGTTTACCATGAGAAATTATTTTATGGACTCTTTCCACCACATCATCCATAGTCCTGCCCAAT
14289154 TTCATGAAAGTTG
131 TTCATGAAAGTTG
*
14289167 CATTCCAAATGTTTTAAAACTGCCATTTTAAGTCTCACCAGTCTTTTTTGGAAGTATAATTATAC
1 CATTCCAAATGTTTTAAAACTCCCATTTTAAGTCTCACCAGTCTTTTTTGGAAGT-T-A-TA-A-
* **
14289232 ATTAATGTGTTTACCATGAGAAATTATTTTATGGACTCTTTCCATCACATCATCTGTAGTCCTGC
61 ATTAATGTGTTTACCATGAGAAATTATTTTATGGACTCTTTCCACCACATCATCCATAGTCCTGC
14289297 CCAATTT
126 CCAATTT
14289304 AAAGAAGACA
Statistics
Matches: 124, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
143 52 0.42
144 1 0.01
145 1 0.01
146 2 0.02
147 1 0.01
148 67 0.54
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (143 bp):
CATTCCAAATGTTTTAAAACTCCCATTTTAAGTCTCACCAGTCTTTTTTGGAAGTTATAAATTAA
TGTGTTTACCATGAGAAATTATTTTATGGACTCTTTCCACCACATCATCCATAGTCCTGCCCAAT
TTCATGAAAGTTG
Found at i:14290086 original size:30 final size:30
Alignment explanation
Indices: 14290050--14290116 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
14290040 GAACGCATCT
* * * *
14290050 CATGTGTTCCACACGAGCTGGACATACGCC
1 CATGTGTGCCACACGAGCTGAACACACACC
*
14290080 CATGTGTGCCACACGGGCTGAACACACACC
1 CATGTGTGCCACACGAGCTGAACACACACC
14290110 CATGTGT
1 CATGTGT
14290117 CAGCTTGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.19
Consensus pattern (30 bp):
CATGTGTGCCACACGAGCTGAACACACACC
Found at i:14291423 original size:138 final size:138
Alignment explanation
Indices: 14291170--14291453 Score: 534
Period size: 138 Copynumber: 2.1 Consensus size: 138
14291160 TTAGGAACAC
*
14291170 TTTTT-TTTATTAATTTAACCATTTTTATTTTTATTATCTTTTTGTTTTCAGTTTAATATTTACA
1 TTTTTATTTATTAATTTAACCATTTTTATTTTGATTATCTTTTTGTTTTCAGTTTAATATTTACA
14291234 TTTACATTTTTTTCTTTTATTTACTTCTGGCAGATTCTTTTGGTTTATGACTAGAAGAAGGCCAT
66 TTTACATTTTTTTCTTTTATTTACTTCTGGCAGATTCTTTTGGTTTATGACTAGAAGAAGGCCAT
14291299 CGGGACCA
131 CGGGACCA
* *
14291307 TTTTTATTTATTAATTTAGCCATTTTTATTTTGATTATCTTTTTGTTTTCAGTTTAATATTTGCA
1 TTTTTATTTATTAATTTAACCATTTTTATTTTGATTATCTTTTTGTTTTCAGTTTAATATTTACA
14291372 TTTACATTTTTTTCTTTTATTTACTTCTGGCAGATTCTTTTGGTTTATGACTAGAAGAAGGCCAT
66 TTTACATTTTTTTCTTTTATTTACTTCTGGCAGATTCTTTTGGTTTATGACTAGAAGAAGGCCAT
14291437 CGGGACCA
131 CGGGACCA
14291445 TTTTTATTT
1 TTTTTATTT
14291454 GACAGTGAAA
Statistics
Matches: 143, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
137 5 0.03
138 138 0.97
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.55
Consensus pattern (138 bp):
TTTTTATTTATTAATTTAACCATTTTTATTTTGATTATCTTTTTGTTTTCAGTTTAATATTTACA
TTTACATTTTTTTCTTTTATTTACTTCTGGCAGATTCTTTTGGTTTATGACTAGAAGAAGGCCAT
CGGGACCA
Found at i:14298848 original size:50 final size:48
Alignment explanation
Indices: 14298726--14299004 Score: 244
Period size: 46 Copynumber: 5.9 Consensus size: 48
14298716 CGGGTAAAGT
* * *
14298726 GCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTATCATCTTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCCGA
*
14298774 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACCGTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-T--CCG-A
14298826 -CCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-A-CATCT-CGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCATCTCCG-A
* *
14298871 GCCGATG-CATGTCCCAGACAT-GTCTTATACTGGCTTAT-ATC-CCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TATCATCTCCGA
** * *
14298916 GGTTGATG-CATGTCCCAGACAT-GTCTTACACTAG-TACTCGTCT-CAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCATCTCCGA
* * *
14298962 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT
14299005 AATATAGCCT
Statistics
Matches: 194, Mismatches: 17, Indels: 39
0.78 0.07 0.16
Matches are distributed among these distances:
44 12 0.06
45 21 0.11
46 51 0.26
47 14 0.07
48 18 0.09
49 42 0.22
50 33 0.17
51 2 0.01
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCCGA
Found at i:14299072 original size:305 final size:305
Alignment explanation
Indices: 14298520--14299623 Score: 1965
Period size: 305 Copynumber: 3.6 Consensus size: 305
14298510 CATCTTTGAG
14298520 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
* * *
14298585 ATGTCTTATACTGGCTTATGTCCCGGGGTTGATGCATGTCCCAGACATTTCTTACACTAGTACTC
66 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
*
14298650 GTCTCAATGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATAATGTGGCCTCAATC
131 GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTCAATC
* *
14298715 ACGGGTAAAGTGCCGATGCCATGTCCCAGACATGGTTTTACACTGGCTATCATCTTCGAGGCCGA
196 ACGGGTAAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGA
14298780 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
261 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
*
14298825 ACCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
14298890 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
66 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
* * *
14298955 GTCTCAATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATAGCCTCAATC
131 GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTCAATC
* * * *
14299020 ACCGGTAAAGTGTCGATGCCATATCCCAAACATGGTCTTACACTGGCTATCATCTTCGAGGCTGA
196 ACGGGTAAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGA
14299085 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
261 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
* * *
14299130 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGCAACCGATGCATGTCCCAAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
* **
14299195 ATGTCTTATACTGGCTTATGTCTTGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
66 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
14299260 GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTCAATC
131 GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTCAATC
* * *
14299325 ACGGGTAAAGTGCCAATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATCTTCGAGGATGA
196 ACGGGTAAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGA
14299390 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
261 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
* *
14299435 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCTGATGCATGTCCCAGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
14299500 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
66 ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
* *
14299565 GTCTCAATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCC
131 GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
14299624 GATGCATGTC
Statistics
Matches: 758, Mismatches: 41, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
305 758 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (305 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAC
ATGTCTTATACTGGCTTATATCCCGAGGTTGATGCATGTCCCAGACATGTCTTACACTAGTACTC
GTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCTCAATC
ACGGGTAAAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCTTCGAGGCTGA
TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT
Found at i:14299275 original size:46 final size:48
Alignment explanation
Indices: 14299033--14299301 Score: 170
Period size: 46 Copynumber: 5.7 Consensus size: 48
14299023 GGTAAAGTGT
* * * * * *
14299033 CGATGCCATATCCCAAACATGGTCTTACACTGGCTA-TCATCTTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GATACTCGTC-TCAATGC
* * *
14299082 TGATGCCATGTCCCAGACATGGTCTTACACT-A-GCTC-TCACATAACCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGATACTCGTCTC--AA---TGC
* *
14299132 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGCAA--C
1 CGATGCCATGTCCCAGACATGGTCTTACACTGATAC-TCGTCTCAATGC
* * * ** * *
14299178 CGATG-CATGTCCCAAACAT-GTCTTATACTGGCTTA-T-GTCTTGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ATACTCGTCTCAATGC
*
14299224 TGATG-CATGTCCCAGACAT-GTCTTACACT-AGTACTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-TACTCGTCTCAATGC
14299270 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
14299302 GCTCTCATAA
Statistics
Matches: 172, Mismatches: 28, Indels: 40
0.72 0.12 0.17
Matches are distributed among these distances:
44 15 0.09
45 16 0.09
46 45 0.26
47 17 0.10
48 10 0.06
49 28 0.16
50 32 0.19
51 3 0.02
52 1 0.01
53 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGATACTCGTCTCAATGC
Found at i:14299579 original size:46 final size:46
Alignment explanation
Indices: 14299340--14299653 Score: 184
Period size: 46 Copynumber: 6.7 Consensus size: 46
14299330 TAAAGTGCCA
* * * * *
14299340 ATGCCATGTCCTAGACATGGTCTTACACT-GGCTATCATCTTCGAGGATG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGAC--TC-TC-TCAATGCTG
* *
14299389 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCACATAACCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTCTC--AA---TGCTG
* **
14299439 ATGCCATGTCCCAGACATGGTCTTACACT-GACACATCT-TGTAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTC-TCTCAAT-GCTG
* * * * * * *
14299485 ATG-CATGTCCCAGACAT-GTCTTATACT-GGCTTATATCCCGAGGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGAC---TCTCTCAATGCTG
14299531 ATG-CATGTCCCAGACAT-GTCTTACACTAGTACTCGTCTCAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-ACTC-TCTCAATGCTG
* * * *
14299577 ATGCCATGTCCCAGACATGGTCTTACACT-GGCTCTCATGATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTC-TCA-AT-GCTG
14299625 ATG-CATGTCCCAGACAT-GTCTTACACTAG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG
14299654 CTCACACAAA
Statistics
Matches: 212, Mismatches: 31, Indels: 46
0.73 0.11 0.16
Matches are distributed among these distances:
44 11 0.05
45 19 0.09
46 64 0.30
47 35 0.17
48 17 0.08
49 30 0.14
50 34 0.16
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGACTCTCTCAATGCTG
Found at i:14299628 original size:94 final size:92
Alignment explanation
Indices: 14299387--14299653 Score: 287
Period size: 94 Copynumber: 2.8 Consensus size: 92
14299377 TCTTCGAGGA
* *
14299387 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAACCGT-GCCGATGCCATGTCCC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CAT-A-TGTGGCCGATG-CATGTCCC
**
14299451 AGACATGGTCTTACACT-GACACATCTTGTAGC
61 AGACAT-GTCTTACACTAGACACATCTAATAGC
* * **
14299483 TGATG-CATGTCCCAGACAT-GTCTTATACTGGCT-T-ATATCCCGAGGTTGATGCATGTCCCAG
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT---GTGGCCGATGCATGTCCCAG
* *
14299544 ACATGTCTTACACTAGTACTCGTCTCAAT-GC
63 ACATGTCTTACACTAG-ACACATCT-AATAGC
14299575 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCATGTCCCAGAC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCATGTCCCAGAC
14299640 ATGTCTTACACTAG
65 ATGTCTTACACTAG
14299654 CTCACACAAA
Statistics
Matches: 145, Mismatches: 14, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
89 1 0.01
90 12 0.08
91 16 0.11
92 18 0.12
93 16 0.11
94 58 0.40
95 15 0.10
96 7 0.05
97 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGACACATCTAATAGC
Found at i:14299628 original size:140 final size:140
Alignment explanation
Indices: 14299344--14299651 Score: 378
Period size: 140 Copynumber: 2.2 Consensus size: 140
14299334 GTGCCAATGC
* *
14299344 CATGTCCTAGACATGGTCTTACACTGGCTATCATCTTCGAGGATGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTCCGAGGATGATGCCATGTCCCAGACATGG
14299409 TCTTACACTAGCTCTCACATAACCGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
65 TCTTACACTAGCTCTCACA-AA-C-TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
*
14299474 TCTTGTAGCTGATG
127 TCTTGTAGCCGATG
* *
14299488 CATGTCCCAGACATGTCTTATACTGGCTTAT-ATC-CCGAGGTTGATG-CATGTCCCAGACAT-G
1 CATGTCCCAGACATGTCTTACACTGGC-TATCATCTCCGAGGATGATGCCATGTCCCAGACATGG
* * * *
14299549 TCTTACACTAGTACTCGTCTC-AA-TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-
65 TCTTACACTAG--CTC-TCACAAACTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA
*
14299611 TCATGATGTGGCCGATG
127 TC-T--TGTAGCCGATG
14299628 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
14299652 AGCTCACACA
Statistics
Matches: 146, Mismatches: 11, Indels: 18
0.83 0.06 0.10
Matches are distributed among these distances:
137 2 0.01
138 37 0.25
140 44 0.30
141 16 0.11
142 13 0.09
143 18 0.12
144 16 0.11
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGTCTTACACTGGCTATCATCTCCGAGGATGATGCCATGTCCCAGACATGGT
CTTACACTAGCTCTCACAAACTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTT
GTAGCCGATG
Found at i:14301265 original size:18 final size:17
Alignment explanation
Indices: 14301244--14301278 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14301234 ATTATGATTA
*
14301244 TTATTATTTTTAAGTTTC
1 TTATTATTCTT-AGTTTC
14301262 TTATTATTCTTAGTTTC
1 TTATTATTCTTAGTTTC
14301279 ATTCTCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.20, C:0.09, G:0.06, T:0.66
Consensus pattern (17 bp):
TTATTATTCTTAGTTTC
Found at i:14301339 original size:15 final size:16
Alignment explanation
Indices: 14301319--14301356 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14301309 CTGTTTTGGC
14301319 TTATTATTA-TAGTTA
1 TTATTATTATTAGTTA
*
14301334 TTATTATTATTCGTTA
1 TTATTATTATTAGTTA
14301350 TT-TTATT
1 TTATTATT
14301357 TTTTTGTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (16 bp):
TTATTATTATTAGTTA
Found at i:14303196 original size:41 final size:41
Alignment explanation
Indices: 14303149--14303232 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
14303139 AGAAATTGAG
14303149 AAAAAAATTATTGAAATCTTAATGTTATAAAACGAGCCATA
1 AAAAAAATTATTGAAATCTTAATGTTATAAAACGAGCCATA
14303190 AAAAAAATTATTGAAATCTTAATGTTATAAAACGAGCCATA
1 AAAAAAATTATTGAAATCTTAATGTTATAAAACGAGCCATA
14303231 AA
1 AA
14303233 TATTTTTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (41 bp):
AAAAAAATTATTGAAATCTTAATGTTATAAAACGAGCCATA
Found at i:14304327 original size:12 final size:13
Alignment explanation
Indices: 14304309--14304338 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
14304299 AGTCTATTTT
14304309 CAAGAGAAATAAG
1 CAAGAGAAATAAG
14304322 -AAGAGAAATAAG
1 CAAGAGAAATAAG
14304334 CAAGA
1 CAAGA
14304339 ACATTATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.63, C:0.07, G:0.23, T:0.07
Consensus pattern (13 bp):
CAAGAGAAATAAG
Found at i:14308873 original size:32 final size:31
Alignment explanation
Indices: 14308836--14308895 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
14308826 AGGAATAAAT
*
14308836 TATACATAAATAAATTTAAAAGAATATATATA
1 TATACAT-AATAAATTTAAAAGAAAATATATA
*
14308868 TATACATAATAGATTTAAAAGAAAATAT
1 TATACATAATAAATTTAAAAGAAAATAT
14308896 TTACATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.33
Consensus pattern (31 bp):
TATACATAATAAATTTAAAAGAAAATATATA
Found at i:14308895 original size:27 final size:29
Alignment explanation
Indices: 14308823--14308907 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 29
14308813 AGGGTCCTTA
14308823 AAAAGGAATAAAT-TATACATAAATAAATTT
1 AAAA-GAATAAATATATACAT-AATAAATTT
*
14308853 AAAAGAATATATATATATACATAATAGATTT
1 AAAAGAATA-A-ATATATACATAATAAATTT
*
14308884 AAAAG-A-AAATATTTACATAA-AAAT
1 AAAAGAATAAATATATACATAATAAAT
14308908 CAATAATGTG
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
26 3 0.06
27 11 0.22
28 1 0.02
29 6 0.12
30 6 0.12
31 15 0.31
32 7 0.14
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (29 bp):
AAAAGAATAAATATATACATAATAAATTT
Found at i:14310402 original size:21 final size:20
Alignment explanation
Indices: 14310364--14310402 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14310354 ACTGAAAAAT
* *
14310364 TTTATTTTGGTTTTTTTAAA
1 TTTATTTTGGCTTATTTAAA
14310384 TTTATTTTTGGCTTATTTA
1 TTTA-TTTTGGCTTATTTA
14310403 TTGTTTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.03, G:0.10, T:0.69
Consensus pattern (20 bp):
TTTATTTTGGCTTATTTAAA
Found at i:14311677 original size:16 final size:17
Alignment explanation
Indices: 14311652--14311684 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14311642 TTTCATGTTA
14311652 AATTAAATTG-AATGAG
1 AATTAAATTGAAATGAG
*
14311668 AATTATATTGAAATGAG
1 AATTAAATTGAAATGAG
14311685 TTAAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (17 bp):
AATTAAATTGAAATGAG
Found at i:14312013 original size:25 final size:25
Alignment explanation
Indices: 14311985--14312032 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14311975 TTCCCAATAA
* *
14311985 TCAGCTTGCATGAGCTTCCCGTTAT
1 TCAGCTTGCAGGAGCTTACCGTTAT
* *
14312010 TCAGTTTGGAGGAGCTTACCGTT
1 TCAGCTTGCAGGAGCTTACCGTT
14312033 TACAACTCGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (25 bp):
TCAGCTTGCAGGAGCTTACCGTTAT
Found at i:14314156 original size:25 final size:25
Alignment explanation
Indices: 14314126--14314193 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
14314116 TTAGCTCTTA
14314126 TGAGCTTCCCAATTATGGCTCTTCG
1 TGAGCTTCCCAATTATGGCTCTTCG
* *
14314151 TGAGCTTCCC-GTTAATTGGCTCTTTG
1 TGAGCTTCCCAATT-A-TGGCTCTTCG
*
14314177 TGAGCTTTCCAA-TATGG
1 TGAGCTTCCCAATTATGG
14314194 ATCGCTTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
24 5 0.14
25 12 0.33
26 19 0.53
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (25 bp):
TGAGCTTCCCAATTATGGCTCTTCG
Found at i:14316086 original size:48 final size:48
Alignment explanation
Indices: 14316016--14316288 Score: 248
Period size: 48 Copynumber: 5.6 Consensus size: 48
14316006 TCTGAGCCAA
* * * *
14316016 TGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGACCTAA
1 TGTAAGACCATGTTTGGAACATGGCATCAGCCTATATATGAGACCTAG
* *
14316064 TGTAAGACCATGTTTGGGACATGGCATCAGCCTCGACATATGAG--CTAG
1 TGTAAGACCATGTTTGGAACATGGCATCAGCCT--ATATATGAGACCTAG
* * ** * **
14316112 TGTAAGACCATGTTTGGAACATGACATCGGTATTTATATGAGAGTTAG
1 TGTAAGACCATGTTTGGAACATGGCATCAGCCTATATATGAGACCTAG
* ** * * *
14316160 TGTAAGACCATGTCTAGG-ACATGGCATCAGCCTCGACATGTGAGCTAG
1 TGTAAGACCATGT-TTGGAACATGGCATCAGCCTATATATGAGACCTAG
* * *
14316208 TGTAAGACCATGTTTGGAACATGGCATCGGAACCGATATACGAGAGCC-AG
1 TGTAAGACCATGTTTGGAACATGGCATC--AGCCTATATATGAGA-CCTAG
* *
14316258 TGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGTAAGACCATGTTTGGAACATGGCATCAGC
14316289 ATCTTACCCT
Statistics
Matches: 180, Mismatches: 36, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
46 7 0.04
47 3 0.02
48 123 0.68
49 3 0.02
50 43 0.24
51 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGAACATGGCATCAGCCTATATATGAGACCTAG
Found at i:14316172 original size:96 final size:96
Alignment explanation
Indices: 14316016--14316288 Score: 395
Period size: 96 Copynumber: 2.8 Consensus size: 96
14316006 TCTGAGCCAA
* * * *
14316016 TGTAAGACCATGTTTGGAACATGGCATC-AACATTTATATGAGACCTAATGTAAGACCATGTTTG
1 TGTAAGACCATGTTTGGAACATGGCATCGGA-ATTTATATGAGAGCTAGTGTAAGACCATGTCTG
14316080 GGACATGGCATCAGCCTCGACATATGAGCTAG
65 GGACATGGCATCAGCCTCGACATATGAGCTAG
* * * *
14316112 TGTAAGACCATGTTTGGAACATGACATCGGTATTTATATGAGAGTTAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGAATTTATATGAGAGCTAGTGTAAGACCATGTCTGG
*
14316177 GACATGGCATCAGCCTCGACATGTGAGCTAG
66 GACATGGCATCAGCCTCGACATATGAGCTAG
** * *
14316208 TGTAAGACCATGTTTGGAACATGGCATCGGAACCGATATACGAGAGCCAGTGTAAGACCATGTCT
1 TGTAAGACCATGTTTGGAACATGGCATCGGAA--TTTATATGAGAGCTAGTGTAAGACCATGTCT
14316273 GGGACATGGCATCAGC
64 GGGACATGGCATCAGC
14316289 ATCTTACCCT
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
96 116 0.74
98 41 0.26
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (96 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGAATTTATATGAGAGCTAGTGTAAGACCATGTCTGG
GACATGGCATCAGCCTCGACATATGAGCTAG
Found at i:14321729 original size:21 final size:20
Alignment explanation
Indices: 14321705--14321745 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14321695 TGAAAAGTTT
14321705 AAATAAAAATAAAAATTAAAA
1 AAATAAAAATAAAAA-TAAAA
* *
14321726 AAATATATATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
14321746 GGGAAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:14323357 original size:9 final size:9
Alignment explanation
Indices: 14323339--14323381 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
14323329 GTGATAAAGA
*
14323339 AATAAGAGT
1 AATAATAGT
14323348 AATAATAGT
1 AATAATAGT
**
14323357 AATAATAAA
1 AATAATAGT
14323366 AATAATAGT
1 AATAATAGT
14323375 AATAATA
1 AATAATA
14323382 AAATGATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (9 bp):
AATAATAGT
Found at i:14323369 original size:18 final size:18
Alignment explanation
Indices: 14323348--14323384 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14323338 AAATAAGAGT
14323348 AATAATAGTAATAATAAA
1 AATAATAGTAATAATAAA
14323366 AATAATAGTAATAATAAA
1 AATAATAGTAATAATAAA
14323384 A
1 A
14323385 TGATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AATAATAGTAATAATAAA
Found at i:14330257 original size:42 final size:42
Alignment explanation
Indices: 14330198--14330283 Score: 156
Period size: 42 Copynumber: 2.0 Consensus size: 42
14330188 AAGTTAGTAC
14330198 AATAATTTCGATGTGTCAATAATATATATACCATGATTGATG
1 AATAATTTCGATGTGTCAATAATATATATACCATGATTGATG
14330240 AATAATTTTC-ATGTGTCAATAATATATATACCATGATTGATG
1 AATAA-TTTCGATGTGTCAATAATATATATACCATGATTGATG
14330282 AA
1 AA
14330284 CTCATCAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 39 0.91
43 4 0.09
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (42 bp):
AATAATTTCGATGTGTCAATAATATATATACCATGATTGATG
Found at i:14330274 original size:22 final size:22
Alignment explanation
Indices: 14330208--14330274 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
14330198 AATAATTTCG
14330208 ATGTGTCAATAATATATATACC
1 ATGTGTCAATAATATATATACC
*
14330230 ATGATTGATGAATAAT-T-T-T--C
1 ATG--TG-TCAATAATATATATACC
14330250 ATGTGTCAATAATATATATACC
1 ATGTGTCAATAATATATATACC
14330272 ATG
1 ATG
14330275 ATTGATGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 16
0.66 0.04 0.30
Matches are distributed among these distances:
17 7 0.20
18 3 0.09
19 1 0.03
20 5 0.14
22 8 0.23
23 1 0.03
24 3 0.09
25 7 0.20
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (22 bp):
ATGTGTCAATAATATATATACC
Found at i:14334322 original size:157 final size:156
Alignment explanation
Indices: 14334052--14334334 Score: 431
Period size: 157 Copynumber: 1.8 Consensus size: 156
14334042 AAAAGCACCG
* * * * *
14334052 CTAAAGATCAAGCATTAGCAGCGTTTTCTGAAAAGCGCCGCAAAAAAAGTTGACCAAAACGACGT
1 CTAAAGATAAAACATTAGCAGCATTTTCTAAAAAGCGCCGCAAAAAAAGTTGACCAAAACGACAT
* * * *
14334117 CGCCCTTTGTTTAGAAGATCGATCTTTAGTGGCGCTTTTTGAAAAACGCCACTAAAGATCGAGTA
66 CGCCCTTTGTTTAAAAGATCGATCTTTAGCGGCACTTTTTAAAAAACGCCACTAAAGATCGAGTA
14334182 TTAGCGGCGCTTTTTAGAAAGTGCCA
131 TTAGCGGCGCTTTTTAGAAAGTGCCA
* * *
14334208 CTAAAGATAAAACATTAGCGGTATTTTCTAAAAAGTGCCGCAAAAAAAAGTTGACCAAAACGACA
1 CTAAAGATAAAACATTAGCAGCATTTTCTAAAAAGCGCCGC-AAAAAAAGTTGACCAAAACGACA
**
14334273 TCGCCCTTTGTTTAAAAGATCGATCTTTAGCGGCACTTTTTAAAAAACGCTGCTAAAGATCG
65 TCGCCCTTTGTTTAAAAGATCGATCTTTAGCGGCACTTTTTAAAAAACGCCACTAAAGATCG
14334335 CTGCAAAAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
156 34 0.30
157 78 0.70
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (156 bp):
CTAAAGATAAAACATTAGCAGCATTTTCTAAAAAGCGCCGCAAAAAAAGTTGACCAAAACGACAT
CGCCCTTTGTTTAAAAGATCGATCTTTAGCGGCACTTTTTAAAAAACGCCACTAAAGATCGAGTA
TTAGCGGCGCTTTTTAGAAAGTGCCA
Found at i:14335120 original size:18 final size:17
Alignment explanation
Indices: 14335088--14335121 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14335078 CAATTTGAAT
14335088 ATTATATTAAAATTATA
1 ATTATATTAAAATTATA
*
14335105 ATTATAGTTTAAATTAT
1 ATTATA-TTAAAATTAT
14335122 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
ATTATATTAAAATTATA
Found at i:14335508 original size:165 final size:166
Alignment explanation
Indices: 14335313--14335660 Score: 477
Period size: 165 Copynumber: 2.1 Consensus size: 166
14335303 AAAACTAAGA
* * * *
14335313 GATTAGTGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAGCAATTTAACGAAAACGGA-GTCGT
1 GATTAGCGGCG-TTTTTGAAAAAACGCCGCAAAAAACATAGCAATTCAACAAAAAC-GATGTCGT
* * * * *
14335377 TTTAATTGGATATTTAGGGGAGTAGCGGCCTTTTTTTAAAAAACGCCGC-AAAAAAGATAGTAGT
64 TTTAATTGGATATTTAGGGGAGTAGCGGCCTTTTTTGAAAAAACGCCACTAAAAAACAAAATAGT
* *
14335441 TTAAAGGAAACGACGTCGTTAAA-ATTGGAGATTTAGGG
129 ATAAAGAAAACGACGTCGTTAAATA-TGGAGATTTAGGG
*
14335479 GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTCAACAAAAACGATGTCGTTT
1 GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAATTCAACAAAAACGATGTCGTTT
* * *
14335544 TAATTGGATATTTAGGGGAGTAGCGGCGTTTTTTGAAAAATCGCCACTAAAAACCAAAATAGTAT
66 TAATTGGATATTTAGGGGAGTAGCGGCCTTTTTTGAAAAAACGCCACTAAAAAACAAAATAGTAT
* * **
14335609 AACGAAAACGGCGTCGTTTTATATGGAGATTTAGGG
131 AAAGAAAACGACGTCGTTAAATATGGAGATTTAGGG
14335645 GATTAGCGGCGTTTTT
1 GATTAGCGGCGTTTTT
14335661 CCGCAAAAAA
Statistics
Matches: 160, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
164 2 0.01
165 90 0.56
166 67 0.42
167 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (166 bp):
GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAATTCAACAAAAACGATGTCGTTT
TAATTGGATATTTAGGGGAGTAGCGGCCTTTTTTGAAAAAACGCCACTAAAAAACAAAATAGTAT
AAAGAAAACGACGTCGTTAAATATGGAGATTTAGGG
Found at i:14335549 original size:82 final size:82
Alignment explanation
Indices: 14335313--14335660 Score: 378
Period size: 83 Copynumber: 4.2 Consensus size: 82
14335303 AAAACTAAGA
* * * *
14335313 GATTAGTGGCGTTTTTTTAAAAAACGCCGCAAAAAACATAGCAATTTAACGAAAACGGA-GTCGT
1 GATTAGCGGCG-TTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTTAACAAAAAC-GACGTCGT
*
14335377 TTTAATTGGATATTTAGGG
64 TTTAATTGGAGATTTAGGG
* * * * * *
14335396 GAGTAGCGGCCTTTTTTTAAAAAACGCCGCAAAAAAGATAGTAGTTTAA-AGGAAACGACGTCGT
1 GATTAGCGG-CGTTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTTAACA-AAAACGACGTCGT
**
14335460 TAAAATTGGAGATTTAGGG
64 TTTAATTGGAGATTTAGGG
* *
14335479 GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTCAACAAAAACGATGTCGTTT
1 GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTTAACAAAAACGACGTCGTTT
*
14335544 TAATTGGATATTTAGGG
66 TAATTGGAGATTTAGGG
* * * * * ** * * *
14335561 GAGTAGCGGCGTTTTTTGAAAAATCGCCACTAAAAACCAAAATAGTATAACGAAAACGGCGTCGT
1 GATTAGCGGCG-TTTTTGAAAAAACGCCGC-AAAAAACATAGCAGTTTAACAAAAACGACGTCGT
14335626 TTT-ATATGGAGATTTAGGG
64 TTTAAT-TGGAGATTTAGGG
14335645 GATTAGCGGCGTTTTT
1 GATTAGCGGCGTTTTT
14335661 CCGCAAAAAA
Statistics
Matches: 222, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
82 73 0.33
83 98 0.44
84 51 0.23
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (82 bp):
GATTAGCGGCGTTTTTGAAAAAACGCCGCAAAAAACATAGCAGTTTAACAAAAACGACGTCGTTT
TAATTGGAGATTTAGGG
Found at i:14338561 original size:46 final size:46
Alignment explanation
Indices: 14338494--14338716 Score: 188
Period size: 46 Copynumber: 4.8 Consensus size: 46
14338484 TGTAACCCGC
* *
14338494 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * * *
14338540 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * *
14338586 ACATTTCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
14338633 CCATAAGTGAACTCGAACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
*
14338683 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14338717 TGCCCAAATA
Statistics
Matches: 141, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 67 0.48
47 60 0.43
48 4 0.03
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:14338609 original size:93 final size:93
Alignment explanation
Indices: 14338501--14338716 Score: 369
Period size: 93 Copynumber: 2.3 Consensus size: 93
14338491 CGCCCATAAG
* * *
14338501 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
14338566 ACGAGTTCAGATGCCTAGTTACATTTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
14338594 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
* *
14338659 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
14338687 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
14338717 TGCCCAAATA
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 115 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:14338619 original size:47 final size:46
Alignment explanation
Indices: 14338548--14338720 Score: 197
Period size: 47 Copynumber: 3.7 Consensus size: 46
14338538 ATCCATAAGT
*
14338548 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA-TTCAC
* * * * * * * *
14338595 GAACTCGGACTCAACTCAATGAGTTCGGACG-TTCGCATCCA-TAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTCA-C
* *
14338641 GAACTCGAACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TCAC
14338688 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
14338721 CAAATATCCG
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 34 0.33
47 64 0.63
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTCAC
Found at i:14342434 original size:19 final size:19
Alignment explanation
Indices: 14342405--14342448 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14342395 ATGAAAAATA
*
14342405 ATTTT-AATATTTTATTTT
1 ATTTTAAATATTTCATTTT
14342423 ATTTTAAATATTTCATTTT
1 ATTTTAAATATTTCATTTT
14342442 ATTTTAA
1 ATTTTAA
14342449 CATTACCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTTTAAATATTTCATTTT
Found at i:14342454 original size:118 final size:116
Alignment explanation
Indices: 14342319--14342545 Score: 341
Period size: 118 Copynumber: 1.9 Consensus size: 116
14342309 GTTCTCTTTT
* * *
14342319 ATTTTATTTTCAAATTACTTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTTATT
1 ATTTTATTTTCAAATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCA-T
* *
14342384 TTTTTTGAATCA-TGAAAAATAATTTTAATATTTTATTTTATTTTAAATATTTC
65 TTTTTT-AATCACAG-AAAATAATTTCAATATTTTATTTTATTTTAAATATTTC
* *
14342437 ATTTTATTTT-AACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCAT
1 ATTTTATTTTCAA-ATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCAT
14342501 TTTTTTAATCACAGAAAATAATTTCAATATTTTATTTTATTTTAA
65 TTTTTTAATCACAGAAAATAATTTCAATATTTTATTTTATTTTAA
14342546 CATTACCTAA
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
116 35 0.35
117 10 0.10
118 55 0.55
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (116 bp):
ATTTTATTTTCAAATTACCTAATTAAATTAAATCATATTTAAAGTTTCATTTTAAATATTTCATT
TTTTTAATCACAGAAAATAATTTCAATATTTTATTTTATTTTAAATATTTC
Found at i:14342478 original size:49 final size:47
Alignment explanation
Indices: 14342425--14342587 Score: 120
Period size: 49 Copynumber: 3.4 Consensus size: 47
14342415 TTTATTTTAT
14342425 TTTAAATATTTCATTTTATTTTAACATTACCTAATTAAATTAAATCGTA
1 TTTAAATATTT-ATTTTATTTTAACATTACCTAATTAAATTAAAT-GTA
*** * * ** *
14342474 TTTAAAGT-TTTATTTTAAATATTT--CATTTTTTTAATCACAGAAAAT-AA
1 TTTAAA-TATTTATTTT--AT-TTTAACA-TTACCTAATTAAATTAAATGTA
*
14342522 TTTCAATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTA
1 TTTAAATA-TTTATTTTATTTTAACATTACCTAATTAAATTAAA-TGTA
14342571 TTTAAAGT-TTTATTTTA
1 TTTAAA-TATTTATTTTA
14342588 AATATTTCAT
Statistics
Matches: 84, Mismatches: 18, Indels: 25
0.66 0.14 0.20
Matches are distributed among these distances:
46 3 0.04
47 14 0.17
48 23 0.27
49 25 0.30
50 16 0.19
51 3 0.04
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.52
Consensus pattern (47 bp):
TTTAAATATTTATTTTATTTTAACATTACCTAATTAAATTAAATGTA
Found at i:14342495 original size:62 final size:60
Alignment explanation
Indices: 14342319--14342503 Score: 177
Period size: 62 Copynumber: 3.1 Consensus size: 60
14342309 GTTCTCTTTT
* *
14342319 ATTTTATTTTCAA-ATTACTTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATTTT
1 ATTTTATTTTCAACATTAC-TAATTAAATTAAA-T-TATTTAAAGTTTTATTTTAAATATTTC
* * * * * * *
14342381 ATTTT-TTTTGAATCATGA-AAAATAATTTTAA-TATTT-TA-TTTTATTTTAAATATTTC
1 ATTTTATTTTCAA-CATTACTAATTAAATTAAATTATTTAAAGTTTTATTTTAAATATTTC
14342437 ATTTTATTTT-AACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTC
1 ATTTTATTTTCAACATTA-CTAATTAAATTAAAT--TATTTAAAGTTTTATTTTAAATATTTC
14342499 ATTTT
1 ATTTT
14342504 TTTAATCACA
Statistics
Matches: 98, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
55 4 0.04
56 23 0.23
57 14 0.14
58 5 0.05
60 5 0.05
61 16 0.16
62 28 0.29
63 3 0.03
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (60 bp):
ATTTTATTTTCAACATTACTAATTAAATTAAATTATTTAAAGTTTTATTTTAAATATTTC
Found at i:14342787 original size:202 final size:208
Alignment explanation
Indices: 14342315--14342795 Score: 719
Period size: 202 Copynumber: 2.3 Consensus size: 208
14342305 TTTTGTTCTC
* * *
14342315 TTTTATTTTATTTTCAA-ATTACTTAATTAAATTAAATTATATTTAAAGTTTCATTTTAAATATT
1 TTTTATTTTATTTT-AACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
* ** * *
14342379 TTATTTTTTTTGAATCATGAAAAATAATTTTAATATTTTATTTTATTTTAAATATTTCATTTTAT
65 TCATTTAATTTGAATCACGAAAAATAATTTT-ACA---TA--TTATTTT-AATATTTCATTTTAT
14342444 TTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCATTTTTTTAA
123 TTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCATTTTTTTAA
14342509 TCACAGAAAATAATTTCAATA
188 TCACAGAAAATAATTTCAATA
14342530 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
14342595 CATTTAATTTGAATCACGAAAAATAA-TTT-CA-A-TATTTT-AT-TTT-ATTTTATTTTAACAT
66 CATTTAATTTGAATCACGAAAAATAATTTTACATATTATTTTAATATTTCATTTTATTTTAACAT
* *
14342653 TACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTTTTTGAATCAC-GA
131 TACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCATTTTTTT-AATCACAG-
14342717 AAAATAATTTCAATA
194 AAAATAATTTCAATA
14342732 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
14342796 CTATTTTATT
Statistics
Matches: 253, Mismatches: 10, Indels: 19
0.90 0.04 0.07
Matches are distributed among these distances:
201 69 0.27
202 88 0.35
203 2 0.01
205 6 0.02
208 1 0.00
212 1 0.00
214 5 0.02
215 81 0.32
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (208 bp):
TTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
CATTTAATTTGAATCACGAAAAATAATTTTACATATTATTTTAATATTTCATTTTATTTTAACAT
TACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATATTTCATTTTTTTAATCACAGAA
AATAATTTCAATA
Found at i:14342789 original size:103 final size:102
Alignment explanation
Indices: 14342431--14342795 Score: 588
Period size: 104 Copynumber: 3.6 Consensus size: 102
14342421 TTATTTTAAA
* *
14342431 TATTTCATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
*
14342496 TTCATTT--TTTTAATCAC-AGAAAATAATTTC-A-A-
66 TTCATTTAATTTGAATCACGA-AAAATAATTTCAATAT
14342528 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
14342593 TTCATTTAATTTGAATCACGAAAAATAATTTCAATATTT
66 TTCATTTAATTTGAATCACGAAAAATAATTTCAATA--T
14342632 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
* *
14342697 TTTATTT-TTTTGAATCACGAAAAATAATTTC-A-A-
66 TTCATTTAATTTGAATCACGAAAAATAATTTCAATAT
14342730 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
1 TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
14342795 T
66 T
14342796 CTATTTTATT
Statistics
Matches: 255, Mismatches: 5, Indels: 15
0.93 0.02 0.05
Matches are distributed among these distances:
97 70 0.27
98 66 0.26
99 20 0.08
100 2 0.01
101 2 0.01
102 1 0.00
103 23 0.09
104 71 0.28
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.52
Consensus pattern (102 bp):
TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATAT
TTCATTTAATTTGAATCACGAAAAATAATTTCAATAT
Found at i:14342802 original size:98 final size:98
Alignment explanation
Indices: 14342429--14342795 Score: 621
Period size: 97 Copynumber: 3.7 Consensus size: 98
14342419 TTTTATTTTA
* *
14342429 AATATTTCATTTTATTTTAACATTACCTAATTAAATTAAATCGTATTTAAAGTTTTATTTTAAAT
1 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
14342494 ATTTCATTTTTTT-AATCAC-AGAAAATAATTTC
66 ATTTCATTTTTTTGAATCACGA-AAAATAATTTC
14342526 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
1 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
*
14342591 ATTTCATTTAATTTGAATCACGAAAAATAATTTC
66 ATTTCATTT-TTTTGAATCACGAAAAATAATTTC
14342625 AATATTTTATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 -A-A---TATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
*
14342690 TAAATATTTTATTTTTTTGAATCACGAAAAATAATTTC
61 TAAATATTTCATTTTTTTGAATCACGAAAAATAATTTC
14342728 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
1 AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
14342793 ATT
66 ATT
14342796 CTATTTTATT
Statistics
Matches: 257, Mismatches: 5, Indels: 15
0.93 0.02 0.05
Matches are distributed among these distances:
97 72 0.28
98 69 0.27
99 17 0.07
100 2 0.01
101 2 0.01
102 1 0.00
103 23 0.09
104 71 0.28
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (98 bp):
AATATTTTATTTTATTTTAACATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAAT
ATTTCATTTTTTTGAATCACGAAAAATAATTTC
Found at i:14342902 original size:16 final size:16
Alignment explanation
Indices: 14342881--14342977 Score: 74
Period size: 16 Copynumber: 6.1 Consensus size: 16
14342871 TCACATAATT
*
14342881 TACATAATTTACATAA
1 TACATAACTTACATAA
14342897 TACATAACTTACATAA
1 TACATAACTTACATAA
** * *
14342913 TTTAT-AGTT-CGA-AT
1 TACATAACTTAC-ATAA
* *
14342927 TTCATAACTTAAATAA
1 TACATAACTTACATAA
14342943 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
*
14342961 TACATGACTTACATAA
1 TACATAACTTACATAA
14342977 T
1 T
14342978 TTAAAGATCG
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
14 6 0.10
15 8 0.13
16 35 0.56
18 14 0.22
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.38
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14342935 original size:30 final size:30
Alignment explanation
Indices: 14342899--14343010 Score: 100
Period size: 30 Copynumber: 3.6 Consensus size: 30
14342889 TTACATAATA
*
14342899 CATAACTTACATAATTTATAGTTCGAATTT
1 CATAACTTAAATAATTTATAGTTCGAATTT
* * *
14342929 CATAACTTAAATAATTTACATAACTTAC-ATAATA
1 CATAACTTAAATAATTT--AT-AGTT-CGA-ATTT
* * * *
14342963 CATGACTTACATAATTTAAAGATCGAATTT
1 CATAACTTAAATAATTTATAGTTCGAATTT
14342993 CATAACTTAAATAATTTA
1 CATAACTTAAATAATTTA
14343011 CATAAAATTA
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
30 35 0.56
31 3 0.05
32 3 0.05
33 4 0.06
34 18 0.29
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (30 bp):
CATAACTTAAATAATTTATAGTTCGAATTT
Found at i:14342943 original size:64 final size:64
Alignment explanation
Indices: 14342875--14343015 Score: 246
Period size: 64 Copynumber: 2.2 Consensus size: 64
14342865 AGCAACTCAC
* * *
14342875 ATAATTTACATAATTTACATAATACATAACTTACATAATTTATAGTTCGAATTTCATAACTTAA
1 ATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCGAATTTCATAACTTAA
*
14342939 ATAATTTACATAACTTACATAATACATGACTTACATAATTTAAAGATCGAATTTCATAACTTAA
1 ATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCGAATTTCATAACTTAA
14343003 ATAATTTACATAA
1 ATAATTTACATAA
14343016 AATTAACACA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 73 1.00
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (64 bp):
ATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCGAATTTCATAACTTAA
Found at i:14343015 original size:9 final size:9
Alignment explanation
Indices: 14342873--14342980 Score: 82
Period size: 9 Copynumber: 12.1 Consensus size: 9
14342863 CCAGCAACTC
14342873 ACATAATTT
1 ACATAATTT
14342882 ACATAATTT
1 ACATAATTT
14342891 ACATAA--T
1 ACATAATTT
*
14342898 ACATAACTT
1 ACATAATTT
14342907 ACATAATTT
1 ACATAATTT
*
14342916 ATAGTTCGAATTT
1 ACA--T--AATTT
*
14342929 -CATAACTT
1 ACATAATTT
*
14342937 AAATAATTT
1 ACATAATTT
*
14342946 ACATAACTT
1 ACATAATTT
14342955 ACATAA--T
1 ACATAATTT
* *
14342962 ACATGACTT
1 ACATAATTT
14342971 ACATAATTT
1 ACATAATTT
14342980 A
1 A
14342981 AAGATCGAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
7 13 0.16
8 4 0.05
9 54 0.68
10 1 0.01
11 1 0.01
12 1 0.01
13 5 0.06
ACGTcount: A:0.44, C:0.14, G:0.03, T:0.39
Consensus pattern (9 bp):
ACATAATTT
Found at i:14343162 original size:9 final size:9
Alignment explanation
Indices: 14343148--14343219 Score: 69
Period size: 9 Copynumber: 8.2 Consensus size: 9
14343138 TCGTACATAA
14343148 TACATAACT
1 TACATAACT
*
14343157 TACATAATT
1 TACATAACT
14343166 TACATAACT
1 TACATAACT
14343175 TACATAA--
1 TACATAACT
*
14343182 TACATAA-A
1 TACATAACT
* * *
14343190 TATATATCA
1 TACATAACT
14343199 TATCATAACT
1 TA-CATAACT
14343209 TACATAACT
1 TACATAACT
14343218 TA
1 TA
14343220 ATTATACTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 7 0.13
8 5 0.09
9 35 0.66
10 6 0.11
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (9 bp):
TACATAACT
Found at i:14343179 original size:34 final size:34
Alignment explanation
Indices: 14343141--14343215 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
14343131 CTTTATGTCG
* *
14343141 TACATAATACATAACT-TACATAATTTACATAACT
1 TACATAATACATAAATATACATAATAT-CATAACT
* *
14343175 TACATAATACATAAATATATATCATATCATAACT
1 TACATAATACATAAATATACATAATATCATAACT
14343209 TACATAA
1 TACATAA
14343216 CTTAATTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 29 0.81
35 7 0.19
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (34 bp):
TACATAATACATAAATATACATAATATCATAACT
Found at i:14349233 original size:17 final size:17
Alignment explanation
Indices: 14349174--14349233 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 17
14349164 TAATAAATTT
14349174 AAAATATAATATATAATAA
1 AAAATATAAT-TAT-ATAA
14349193 AAAATAT-ATT-TAT-A
1 AAAATATAATTATATAA
*
14349207 AGAATAATAATTATATAA
1 AAAAT-ATAATTATATAA
14349225 AAAATATAA
1 AAAATATAA
14349234 AATATATTGG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 5 0.14
15 4 0.11
16 4 0.11
17 8 0.23
18 7 0.20
19 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATAATTATATAA
Found at i:14349768 original size:17 final size:18
Alignment explanation
Indices: 14349715--14349812 Score: 137
Period size: 18 Copynumber: 5.5 Consensus size: 18
14349705 AATCATATCT
*
14349715 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
14349734 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
14349752 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
14349769 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
14349787 TTTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
14349804 TCTAAGATT
1 TCTAAGATT
14349813 ACATATCATT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
17 30 0.42
18 31 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:14349773 original size:35 final size:35
Alignment explanation
Indices: 14349715--14349821 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
14349705 AATCATATCT
14349715 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
14349752 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
14349787 TTTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
14349822 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 52 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.39
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:14350685 original size:21 final size:21
Alignment explanation
Indices: 14350652--14350691 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14350642 TTAGAGCGGA
*
14350652 GGCAGCAGAGAGGGAGGCAGC
1 GGCAACAGAGAGGGAGGCAGC
*
14350673 GGCAACAGTGAGGGAGGCA
1 GGCAACAGAGAGGGAGGCA
14350692 AAACAGAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.50, T:0.03
Consensus pattern (21 bp):
GGCAACAGAGAGGGAGGCAGC
Found at i:14350961 original size:31 final size:31
Alignment explanation
Indices: 14350925--14350985 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
14350915 TATATTTTTT
*
14350925 ATGCTATATTTGCTATTTTTGGTTGGATTTC
1 ATGCTATATTTGCTATTTTTGGTTGAATTTC
*
14350956 ATGCTATATTTGCTGTTTTTGGTTGAATTT
1 ATGCTATATTTGCTATTTTTGGTTGAATTT
14350986 AATGTAGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.16, C:0.08, G:0.20, T:0.56
Consensus pattern (31 bp):
ATGCTATATTTGCTATTTTTGGTTGAATTTC
Found at i:14357986 original size:46 final size:46
Alignment explanation
Indices: 14357932--14358243 Score: 335
Period size: 46 Copynumber: 7.0 Consensus size: 46
14357922 GTGTGCTCTC
* *
14357932 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
14357978 TAATATGAAATGTGTAAGACCAAGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
14358024 TGATATGAAATGTGTAAGACCATGGTTG--A-A-A--A---C--C-
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
14358058 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** ** * *
14358104 TGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* **
14358150 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
14358196 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
14358242 TG
1 TG
14358244 TCAAAGATAA
Statistics
Matches: 232, Mismatches: 21, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
34 28 0.12
35 1 0.00
36 1 0.00
37 2 0.01
38 1 0.00
40 2 0.01
42 1 0.00
43 2 0.01
44 1 0.00
45 2 0.01
46 191 0.82
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:14358060 original size:34 final size:34
Alignment explanation
Indices: 14358020--14358088 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
14358010 ATACCATGGC
14358020 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
14358054 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAA
14358088 A
1 A
14358089 GATACCATGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (34 bp):
AACCTGATATGAAATGTGTAAGACCATGGTTGAA
Found at i:14358114 original size:80 final size:80
Alignment explanation
Indices: 14357974--14358226 Score: 290
Period size: 80 Copynumber: 3.0 Consensus size: 80
14357964 ATACCATAGC
* * * * * *
14357974 AACCTAATATGAAATGTGTAAGACCAAGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGT
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGT
14358039 AAGACCATGGTTGAA
66 AAGACCATGGTTGAA
* *
14358054 AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAAT
1 AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGT
14358119 AAGACCATGGTTGAAA
66 AAGACCATGGTTG-AA
**
14358135 GATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 -A-ACC-T-G-A---T---ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
14358200 AGAAAATGAGTAAGACCATAGTTGAA
55 AGGAAATGAGTAAGACCATGGTTGAA
14358226 A
1 A
14358227 GACACTATGG
Statistics
Matches: 147, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
80 70 0.48
81 2 0.01
82 1 0.01
83 3 0.02
84 1 0.01
85 1 0.01
86 1 0.01
89 1 0.01
90 1 0.01
91 2 0.01
92 64 0.44
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (80 bp):
AACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAGT
AAGACCATGGTTGAA
Found at i:14358158 original size:126 final size:126
Alignment explanation
Indices: 14357931--14358180 Score: 374
Period size: 126 Copynumber: 2.0 Consensus size: 126
14357921 AGTGTGCTCT
* * * **
14357931 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACCTAATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACATAACAGGAAATGAATAAG
* **
14357996 ACCAAGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAAC
66 ACCAAGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAAC
* * *
14358057 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACATAACAGGAAATGAATAAG
* * *
14358122 ACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAA
66 ACCAAGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAA
14358181 GATACCATGG
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 110 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (126 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAACATAACAGGAAATGAATAAG
ACCAAGGTTGAAAGATACCATGGCAACCTGACATGAAATGAATAAGACCATGGTTGAAAAC
Found at i:14358545 original size:16 final size:17
Alignment explanation
Indices: 14358524--14358556 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14358514 ATGATGGTGC
14358524 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
14358540 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
14358557 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:14370976 original size:17 final size:17
Alignment explanation
Indices: 14370954--14370992 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14370944 CTCTACTTTT
14370954 TTCTTTTCTTTGAGTAC
1 TTCTTTTCTTTGAGTAC
14370971 TTCTTTTCTTTGAGTAC
1 TTCTTTTCTTTGAGTAC
14370988 TTCTT
1 TTCTT
14370993 CAGCCTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.10, C:0.18, G:0.10, T:0.62
Consensus pattern (17 bp):
TTCTTTTCTTTGAGTAC
Found at i:14376634 original size:31 final size:31
Alignment explanation
Indices: 14376596--14376657 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
14376586 AAGGTAGGTG
14376596 TAAAATCCATATATGAATACAATGTATATAC
1 TAAAATCCATATATGAATACAATGTATATAC
* *
14376627 TAAAATCCATATATGAATGCACTGTATATAC
1 TAAAATCCATATATGAATACAATGTATATAC
14376658 ACATTGGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (31 bp):
TAAAATCCATATATGAATACAATGTATATAC
Found at i:14377332 original size:17 final size:18
Alignment explanation
Indices: 14377298--14377336 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
14377288 TAAATTTTAA
*
14377298 ATTTACACATTAACTTTG
1 ATTTACACATGAACTTTG
*
14377316 ATTTA-ACATGAATTTTG
1 ATTTACACATGAACTTTG
14377333 ATTT
1 ATTT
14377337 GATGTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (18 bp):
ATTTACACATGAACTTTG
Found at i:14377914 original size:11 final size:11
Alignment explanation
Indices: 14377878--14377925 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
14377868 ATTGTGAATA
14377878 AATTATTAATTT
1 AATTATT-ATTT
*
14377890 AATTATAATTT
1 AATTATTATTT
*
14377901 AATTATTATGT
1 AATTATTATTT
*
14377912 AATT-TTTTTT
1 AATTATTATTT
14377922 AATT
1 AATT
14377926 CACACAACTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
10 8 0.26
11 17 0.55
12 6 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (11 bp):
AATTATTATTT
Found at i:14380515 original size:24 final size:24
Alignment explanation
Indices: 14380488--14380535 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14380478 ATACTGAAGT
14380488 AAAATTTTAATTTGCTGATGCAAC
1 AAAATTTTAATTTGCTGATGCAAC
14380512 AAAATTTTAATTTGCTGATGCAAC
1 AAAATTTTAATTTGCTGATGCAAC
14380536 CACAAATTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (24 bp):
AAAATTTTAATTTGCTGATGCAAC
Done.