Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 45 of 356
Found at i:14683950 original size:14 final size:14
Alignment explanation
Indices: 14683931--14683967 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
14683921 TGTGCCCTTA
*
14683931 TTTTCAAGGAAAAG
1 TTTTCAAAGAAAAG
14683945 TTTTCAAAGAAAAG
1 TTTTCAAAGAAAAG
*
14683959 TTTTTAAAG
1 TTTTCAAAG
14683968 TTCCCGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.35
Consensus pattern (14 bp):
TTTTCAAAGAAAAG
Found at i:14691077 original size:30 final size:30
Alignment explanation
Indices: 14691031--14691124 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
14691021 TTTTATTATG
* *
14691031 CCAATATCTCGATACCCATATCATTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
14691062 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
14691092 CCAATATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
14691122 CCA
1 CCA
14691125 TAAATATGGA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 53 0.88
31 7 0.12
ACGTcount: A:0.28, C:0.26, G:0.06, T:0.40
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:14691086 original size:15 final size:15
Alignment explanation
Indices: 14691041--14691118 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
14691031 CCAATATCTC
*
14691041 GATACCCATATCATT
1 GATACCCATATCTTT
** *
14691056 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14691071 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
14691086 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14691101 GATACCCATATCTTT
1 GATACCCATATCTTT
14691116 GAT
1 GAT
14691119 TTTCCATAAA
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
14 8 0.17
15 30 0.65
16 8 0.17
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:14695740 original size:30 final size:30
Alignment explanation
Indices: 14695694--14695787 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
14695684 TTTTATTATG
*
14695694 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
14695725 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
*
14695755 CCAATATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
14695785 CCA
1 CCA
14695788 TAAATATGGA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 54 0.89
31 7 0.11
ACGTcount: A:0.27, C:0.26, G:0.06, T:0.41
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:14695749 original size:15 final size:15
Alignment explanation
Indices: 14695704--14695781 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
14695694 CCAATATCTC
14695704 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
14695719 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14695734 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
14695749 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
14695764 GATACCCATATCTTT
1 GATACCCATATCTTT
14695779 GAT
1 GAT
14695782 TTTCCATAAA
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:14696092 original size:31 final size:30
Alignment explanation
Indices: 14696029--14696093 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
14696019 AACTTTTATT
* **
14696029 AAAAATATATATTATTTTATTTAATATTTA
1 AAAAATATATATTATTTTATTTAAAAGATA
14696059 AAAAATTATATATTATTATTA-TTAAAAGATA
1 AAAAA-TATATATTATT-TTATTTAAAAGATA
14696090 AAAA
1 AAAA
14696094 GAAACAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 5 0.17
31 22 0.73
32 3 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (30 bp):
AAAAATATATATTATTTTATTTAAAAGATA
Found at i:14696554 original size:15 final size:17
Alignment explanation
Indices: 14696534--14696568 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
14696524 CTCTATTAAA
14696534 TTTAAA-TAATATCT-T
1 TTTAAATTAATATCTAT
14696549 TTTAAATTAATATCTAT
1 TTTAAATTAATATCTAT
14696566 TTT
1 TTT
14696569 TATCAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 8 0.44
17 4 0.22
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAAATTAATATCTAT
Found at i:14709904 original size:39 final size:39
Alignment explanation
Indices: 14709831--14709911 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
14709821 ATCTACGGAT
* *
14709831 TAAGTGTATAAGGTTGAAAGTATCAGTTCGAGGACCCAG
1 TAAGTGTATAAGGTGGAAAGTATCAGTTCAAGGACCCAG
* *
14709870 TAAGTGTATAAGGTGGAAAGTA-CTGCTTCAAGGACCTAG
1 TAAGTGTATAAGGTGGAAAGTATCAG-TTCAAGGACCCAG
14709909 TAA
1 TAA
14709912 AATTGATCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.05
39 35 0.95
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (39 bp):
TAAGTGTATAAGGTGGAAAGTATCAGTTCAAGGACCCAG
Found at i:14709977 original size:96 final size:96
Alignment explanation
Indices: 14709813--14710008 Score: 365
Period size: 96 Copynumber: 2.0 Consensus size: 96
14709803 TTTGGTTACT
*
14709813 TAAAATGGATCTACGGATTAAGTGTATAAGGTTGAAAGTATCAGTTCGAGGACCCAGTAAGTGTA
1 TAAAATGGATCTACGGATTAAGTGTATAAGGTTGAAAGTATCAGTTCAAGGACCCAGTAAGTGTA
14709878 TAAGGTGGAAAGTACTGCTTCAAGGACCTAG
66 TAAGGTGGAAAGTACTGCTTCAAGGACCTAG
* *
14709909 TAAAATTGATCTACGGATTAAGTGTATCAGGTTGAAAGTATCAGTTCAAGGACCCAGTAAGTGTA
1 TAAAATGGATCTACGGATTAAGTGTATAAGGTTGAAAGTATCAGTTCAAGGACCCAGTAAGTGTA
14709974 TAAGGTGGAAAGTACTGCTTCAAGGACCTAG
66 TAAGGTGGAAAGTACTGCTTCAAGGACCTAG
14710005 TAAA
1 TAAA
14710009 TCAATCTTCT
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.27
Consensus pattern (96 bp):
TAAAATGGATCTACGGATTAAGTGTATAAGGTTGAAAGTATCAGTTCAAGGACCCAGTAAGTGTA
TAAGGTGGAAAGTACTGCTTCAAGGACCTAG
Found at i:14709985 original size:39 final size:39
Alignment explanation
Indices: 14709927--14710007 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
14709917 ATCTACGGAT
* *
14709927 TAAGTGTATCAGGTTGAAAGTATCAG-TTCAAGGACCCAG
1 TAAGTGTATAAGGTGGAAAGTA-CAGCTTCAAGGACCCAG
* *
14709966 TAAGTGTATAAGGTGGAAAGTACTGCTTCAAGGACCTAG
1 TAAGTGTATAAGGTGGAAAGTACAGCTTCAAGGACCCAG
14710005 TAA
1 TAA
14710008 ATCAATCTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.05
39 35 0.95
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (39 bp):
TAAGTGTATAAGGTGGAAAGTACAGCTTCAAGGACCCAG
Found at i:14718132 original size:29 final size:30
Alignment explanation
Indices: 14718085--14718147 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
14718075 AATTTTGTTA
* * *
14718085 AAAAAATTATGAGATTAGG-TCATTTTATC
1 AAAAAATTACGAGAATAGGTTAATTTTATC
* *
14718114 AAAAAATTACGGGAATAGGTTAATTTTATG
1 AAAAAATTACGAGAATAGGTTAATTTTATC
14718144 AAAA
1 AAAA
14718148 CGCTTTCAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (30 bp):
AAAAAATTACGAGAATAGGTTAATTTTATC
Found at i:14718258 original size:22 final size:22
Alignment explanation
Indices: 14718233--14718302 Score: 52
Period size: 22 Copynumber: 3.2 Consensus size: 22
14718223 TTTTTTAGGG
14718233 TTAGGGTTTTATTTTTTAAAAT
1 TTAGGGTTTTATTTTTTAAAAT
* *** ***
14718255 TTAGAGTTAGGGTTTTTT-AGGG
1 TTAGGGTT-TTATTTTTTAAAAT
*
14718277 TTAGGATTTTATTTTTTAAAAT
1 TTAGGGTTTTATTTTTTAAAAT
14718299 TTAG
1 TTAG
14718303 AGTTAGGGTT
Statistics
Matches: 31, Mismatches: 15, Indels: 4
0.62 0.30 0.08
Matches are distributed among these distances:
21 6 0.19
22 19 0.61
23 6 0.19
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (22 bp):
TTAGGGTTTTATTTTTTAAAAT
Found at i:14718271 original size:44 final size:44
Alignment explanation
Indices: 14718222--14718313 Score: 175
Period size: 44 Copynumber: 2.1 Consensus size: 44
14718212 CTTGTGTTAT
*
14718222 GTTTTTTAGGGTTAGGGTTTTATTTTTTAAAATTTAGAGTTAGG
1 GTTTTTTAGGGTTAGGATTTTATTTTTTAAAATTTAGAGTTAGG
14718266 GTTTTTTAGGGTTAGGATTTTATTTTTTAAAATTTAGAGTTAGG
1 GTTTTTTAGGGTTAGGATTTTATTTTTTAAAATTTAGAGTTAGG
14718310 GTTT
1 GTTT
14718314 AGGGTTTTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.53
Consensus pattern (44 bp):
GTTTTTTAGGGTTAGGATTTTATTTTTTAAAATTTAGAGTTAGG
Found at i:14740530 original size:37 final size:37
Alignment explanation
Indices: 14740431--14740530 Score: 96
Period size: 40 Copynumber: 2.6 Consensus size: 37
14740421 CCAAACACAC
*
14740431 CAAAGTGGTGACCAATGCCTCATTGGAAAGTTCGAAG
1 CAAAGTGGTGACCAATGCCTCATTGGAAAGTCCGAAG
* * * *
14740468 CAAA-TAAGTGACGACTAACGTCTCATTGGCTAAG-CCGAAG
1 CAAAGT-GGTGAC--C-AATGCCTCATTGG-AAAGTCCGAAG
14740508 CAAAGTGGTGACCAATGCCTCAT
1 CAAAGTGGTGACCAATGCCTCAT
14740531 CGAATCTATC
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
36 1 0.02
37 17 0.35
38 1 0.02
39 1 0.02
40 25 0.51
41 4 0.08
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (37 bp):
CAAAGTGGTGACCAATGCCTCATTGGAAAGTCCGAAG
Found at i:14741438 original size:5 final size:5
Alignment explanation
Indices: 14741428--14741502 Score: 50
Period size: 5 Copynumber: 14.8 Consensus size: 5
14741418 AATTTCTCCT
* *
14741428 TTTTC TTTTC TTTTC TTCTT- TCTTTC -TTTC TATTTC GTTTC TTCTC
1 TTTTC TTTTC TTTTC TT-TTC T-TTTC TTTTC T-TTTC TTTTC TTTTC
*
14741474 TGTTTC TTTTTC TTGT- TTTTC -TTTC TTTT
1 T-TTTC -TTTTC TTTTC TTTTC TTTTC TTTT
14741503 ATTTATTCTT
Statistics
Matches: 55, Mismatches: 6, Indels: 18
0.70 0.08 0.23
Matches are distributed among these distances:
4 11 0.20
5 29 0.53
6 14 0.25
7 1 0.02
ACGTcount: A:0.01, C:0.20, G:0.04, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:14741446 original size:22 final size:22
Alignment explanation
Indices: 14741421--14741483 Score: 56
Period size: 26 Copynumber: 2.7 Consensus size: 22
14741411 AAACCCTAAT
*
14741421 TTCTCCTTTTTCTTTTCTTTTC
1 TTCTCCTTTTTCTTTTCGTTTC
*
14741443 TTCTTTCTTTCTTTCTATTTCGTTTC
1 TTC--TCCTT-TTTCT-TTTCGTTTC
*
14741469 TTCT-CTGTTTCTTTT
1 TTCTCCTTTTTCTTTT
14741484 TCTTGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
21 3 0.09
22 8 0.24
23 1 0.03
24 5 0.15
25 5 0.15
26 11 0.33
ACGTcount: A:0.02, C:0.24, G:0.03, T:0.71
Consensus pattern (22 bp):
TTCTCCTTTTTCTTTTCGTTTC
Found at i:14741449 original size:26 final size:26
Alignment explanation
Indices: 14741429--14741501 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
14741419 ATTTCTCCTT
*
14741429 TTTCT-TTTCTTTTCTTCTTTCTTTC
1 TTTCTATTTCGTTTCTTCTTTCTTTC
* *
14741454 TTTCTATTTCGTTTCTTCTCTGTTTC
1 TTTCTATTTCGTTTCTTCTTTCTTTC
14741480 TTT-T-TCTT-GTTT-TTCTTTCTTT
1 TTTCTAT-TTCGTTTCTTCTTTCTTT
14741502 TATTTATTCT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
23 8 0.20
24 5 0.12
25 8 0.20
26 20 0.49
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTCTATTTCGTTTCTTCTTTCTTTC
Found at i:14749548 original size:8 final size:8
Alignment explanation
Indices: 14749535--14749578 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
14749525 ACTTAAGTAT
14749535 ATAATATA
1 ATAATATA
14749543 ATAATATA
1 ATAATATA
* * *
14749551 TTAGTTTA
1 ATAATATA
*
14749559 ATAATTTA
1 ATAATATA
14749567 ATAATATA
1 ATAATATA
14749575 ATAA
1 ATAA
14749579 AACCTAAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
ATAATATA
Found at i:14769049 original size:24 final size:24
Alignment explanation
Indices: 14769002--14769051 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14768992 AAATTACAAA
* **
14769002 AGAATGTTCCATTTTTTTGGAATG
1 AGAATGTTCCATTTGTTTAAAATG
14769026 AGAATGTTCCATTTGTTTAAAATG
1 AGAATGTTCCATTTGTTTAAAATG
14769050 AG
1 AG
14769052 CAGTGTCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (24 bp):
AGAATGTTCCATTTGTTTAAAATG
Found at i:14772229 original size:8 final size:8
Alignment explanation
Indices: 14772216--14772259 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
14772206 ACTTAAGTAT
14772216 ATAATATA
1 ATAATATA
14772224 ATAATATA
1 ATAATATA
*
14772232 TTAATATA
1 ATAATATA
14772240 ATAAT-TGA
1 ATAATAT-A
14772248 ATAATATA
1 ATAATATA
14772256 ATAA
1 ATAA
14772260 AACATAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 1 0.03
8 30 0.94
9 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (8 bp):
ATAATATA
Found at i:14772243 original size:24 final size:24
Alignment explanation
Indices: 14772208--14772255 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
14772198 GACTTAATAC
14772208 TTAAGTATATAATAT-AATAATATA
1 TTAAGTATATAAT-TGAATAATATA
14772232 TTAA-TATAATAATTGAATAATATA
1 TTAAGTAT-ATAATTGAATAATATA
14772256 ATAAAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
TTAAGTATATAATTGAATAATATA
Found at i:14772316 original size:5 final size:5
Alignment explanation
Indices: 14772308--14772332 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14772298 AAAAGGAATA
14772308 GAAAC GAAAC GAAAC GAAAC GAAAC
1 GAAAC GAAAC GAAAC GAAAC GAAAC
14772333 AGAGAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAC
Found at i:14781437 original size:13 final size:13
Alignment explanation
Indices: 14781415--14781447 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14781405 AAGGTTTTGT
14781415 TTAT-TAAACTAA
1 TTATCTAAACTAA
14781427 TTATCTAAACTAA
1 TTATCTAAACTAA
*
14781440 TTAACTAA
1 TTATCTAA
14781448 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:14781811 original size:31 final size:31
Alignment explanation
Indices: 14781773--14781835 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
14781763 GCGTTCGATC
14781773 AACTCCGCTTAATTATGCCAAATCTACTCTT
1 AACTCCGCTTAATTATGCCAAATCTACTCTT
14781804 AACTCCGCTTAATTATGCCAAATCTACTCTT
1 AACTCCGCTTAATTATGCCAAATCTACTCTT
14781835 A
1 A
14781836 GGCAGCGTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (31 bp):
AACTCCGCTTAATTATGCCAAATCTACTCTT
Found at i:14786135 original size:14 final size:14
Alignment explanation
Indices: 14786116--14786145 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14786106 TTGATTCTGA
*
14786116 TTTTAATTTTGATT
1 TTTTAATCTTGATT
14786130 TTTTAATCTTGATT
1 TTTTAATCTTGATT
14786144 TT
1 TT
14786146 AAAGGGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTAATCTTGATT
Found at i:14786679 original size:40 final size:41
Alignment explanation
Indices: 14786635--14786764 Score: 118
Period size: 41 Copynumber: 3.2 Consensus size: 41
14786625 TATTATACAT
14786635 TAGCGGCGTTTGCAAT-AAAACGCCGCAAAAAACTGAGCAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
*** * * *
14786675 TAGCGGCGTTTTTTATCCAAACGCCGCTAAAAACTGAGTAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
* **** * * * *
14786716 TAGCAGCGTTTTTGGTCTAAACGCCACTAAAAACTGAACAA
1 TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
14786757 TAGCGGCG
1 TAGCGGCG
14786765 CTTTTGGAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
40 13 0.17
41 62 0.83
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (41 bp):
TAGCGGCGTTTGCAATCAAAACGCCGCAAAAAACTGAGCAA
Found at i:14786771 original size:41 final size:41
Alignment explanation
Indices: 14786652--14786784 Score: 160
Period size: 41 Copynumber: 3.3 Consensus size: 41
14786642 GTTTGCAATA
* **
14786652 AAACGCCGCAAAAAACTGAGCAATAGCGGCGTTTTTTATCC
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* * *
14786693 AAACGCCGCTAAAAACTGAGTAATAGCAGCGTTTTTGGTCT
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
* * * **
14786734 AAACGCCACTAAAAACTGAACAATAGCGGCGCTTTTGG-AA
1 AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
14786774 AAACGCCGCTA
1 AAACGCCGCTA
14786785 TAGGTCGAGG
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 10 0.13
41 68 0.87
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.21
Consensus pattern (41 bp):
AAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGTCC
Found at i:14787385 original size:7 final size:7
Alignment explanation
Indices: 14787375--14787408 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
14787365 TGGGGTTAAG
14787375 GGTTTAT
1 GGTTTAT
14787382 GGTTTAT
1 GGTTTAT
*
14787389 GGATTAT
1 GGTTTAT
*
14787396 GTTTTAT
1 GGTTTAT
14787403 GGTTTA
1 GGTTTA
14787409 GAGTTTAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (7 bp):
GGTTTAT
Found at i:14787561 original size:14 final size:14
Alignment explanation
Indices: 14787532--14787563 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
14787522 ATTGTTTTTA
14787532 GTTTAGAGTTTATG
1 GTTTAGAGTTTATG
*
14787546 GTTTAGAGTTTGTG
1 GTTTAGAGTTTATG
14787560 GTTT
1 GTTT
14787564 TTTGGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (14 bp):
GTTTAGAGTTTATG
Found at i:14788006 original size:17 final size:18
Alignment explanation
Indices: 14787984--14788017 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14787974 TAATTGTTTT
14787984 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
14788001 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
14788018 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:14790108 original size:138 final size:138
Alignment explanation
Indices: 14789883--14790134 Score: 452
Period size: 138 Copynumber: 1.8 Consensus size: 138
14789873 GTGGAGTCCC
* * *
14789883 TGTTTTGAATTTTAGAATCATATGTAATCTCTTTAAAAATTGGCATTAAATTGTTTTTAGGTTTT
1 TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTATTTTTAGGTTTT
14789948 ATAATTACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
66 ATAATTACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
14790013 GGAGTACT
131 GGAGTACT
*
14790021 TGTTTTGAATTTTAGAACCATATGTAATTTCCTTAAAAATTGGCATTAAATTATTTTTAGGTTTT
1 TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTATTTTTAGGTTTT
14790086 AT-ATTAACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAA
66 ATAATT-ACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAA
14790135 AATTTTAAAA
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
137 3 0.03
138 106 0.97
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (138 bp):
TGTTTTGAATTTTAGAACCATATGTAATCTCCTTAAAAATTGGCATTAAATTATTTTTAGGTTTT
ATAATTACATTTCTCTTTGTTATGTTATTATGCAACTTATTTGATTTAACGTCTGGATGCTTTTA
GGAGTACT
Found at i:14791700 original size:22 final size:22
Alignment explanation
Indices: 14791672--14791716 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14791662 TCAAGTGTTG
14791672 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
14791694 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
14791716 T
1 T
14791717 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:14795477 original size:22 final size:22
Alignment explanation
Indices: 14795449--14795493 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14795439 AGGGGGAGTG
14795449 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
14795471 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
14795493 T
1 T
14795494 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:14795861 original size:14 final size:13
Alignment explanation
Indices: 14795822--14795875 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
14795812 ATTTTTATTG
*
14795822 TTTATTTT-AGTT
1 TTTATTTTAAATT
*
14795834 TTGATTTTAAATT
1 TTTATTTTAAATT
14795847 TTTATTTTAATATT
1 TTTATTTTAA-ATT
* *
14795861 TTTAGTTAAAATT
1 TTTATTTTAAATT
14795874 TT
1 TT
14795876 AATAGAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
12 7 0.20
13 17 0.49
14 11 0.31
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (13 bp):
TTTATTTTAAATT
Found at i:14796091 original size:43 final size:43
Alignment explanation
Indices: 14796022--14796162 Score: 192
Period size: 43 Copynumber: 3.3 Consensus size: 43
14796012 AAATTTTATT
* * * * *
14796022 ACCTTTAGTGGTGTTTTTGGGAAAAGCGTTGCTAAAGGTCAAG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATG
* * *
14796065 ACCTTTAACGGCGTTTGTGGGTAAAGCGTCGCGAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATG
* *
14796108 ACTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATG
1 ACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATG
14796151 ACCTTTAGCGGC
1 ACCTTTAGCGGC
14796163 ATTTTTTAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (43 bp):
ACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATG
Found at i:14799610 original size:18 final size:17
Alignment explanation
Indices: 14799573--14799618 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
14799563 TTAAAACTAT
*
14799573 TAAATTTATTAATATAA
1 TAAATTTATTAACATAA
14799590 TAATATTTATTATACAT-A
1 TAA-ATTTATTA-ACATAA
14799608 TAAATTT-TTAA
1 TAAATTTATTAA
14799619 ATCGATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 1 0.04
16 3 0.12
17 7 0.27
18 12 0.46
19 3 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAATTTATTAACATAA
Found at i:14810840 original size:10 final size:10
Alignment explanation
Indices: 14810821--14810872 Score: 95
Period size: 10 Copynumber: 5.1 Consensus size: 10
14810811 GTTAAACCGA
14810821 TTTAATAAATT
1 TTTAA-AAATT
14810832 TTTAAAAATT
1 TTTAAAAATT
14810842 TTTAAAAATT
1 TTTAAAAATT
14810852 TTTAAAAATT
1 TTTAAAAATT
14810862 TTTAAAAATT
1 TTTAAAAATT
14810872 T
1 T
14810873 ATTTTATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
10 36 0.88
11 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTAAAAATT
Found at i:14823150 original size:28 final size:30
Alignment explanation
Indices: 14823106--14823165 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
14823096 ATTTTAATAG
14823106 TTAAAATAATAAATT-AATTA-ATATAATT
1 TTAAAATAATAAATTAAATTATATATAATT
* *
14823134 TTAAAA-ATTAAAGTTAAATTATATTTAATT
1 TTAAAATAATAAA-TTAAATTATATATAATT
14823164 TT
1 TT
14823166 CAAGTCTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 8 0.30
29 5 0.19
30 9 0.33
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (30 bp):
TTAAAATAATAAATTAAATTATATATAATT
Found at i:14823362 original size:29 final size:28
Alignment explanation
Indices: 14823330--14823401 Score: 72
Period size: 30 Copynumber: 2.5 Consensus size: 28
14823320 TTTAATTATA
14823330 AAAATTAAAGTTGGTGGAAAAAGTTCAAT
1 AAAATTAAAGTTGGTGGAAAAA-TTCAAT
* * *
14823359 AAAATTCAAATTTTAGTGGCAAAATTCAAT
1 AAAATT-AAA-GTTGGTGGAAAAATTCAAT
* *
14823389 CACATTAAAGTTG
1 AAAATTAAAGTTG
14823402 ATTGACAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
28 2 0.06
29 9 0.26
30 13 0.38
31 10 0.29
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATTAAAGTTGGTGGAAAAATTCAAT
Found at i:14827020 original size:21 final size:22
Alignment explanation
Indices: 14826982--14827023 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
14826972 TTTTAACCTA
14826982 TAATTTTTAATTCTAATTATTT
1 TAATTTTTAATTCTAATTATTT
14827004 TAATATTTT-ATT-TAATTATT
1 TAAT-TTTTAATTCTAATTATT
14827024 CCTAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TAATTTTTAATTCTAATTATTT
Found at i:14830210 original size:20 final size:20
Alignment explanation
Indices: 14830192--14830228 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14830182 ATGATTAATC
14830192 TTAA-TTAA-CTTTAATTAA
1 TTAACTTAATCTTTAATTAA
14830210 TTAACTTAATCTTTAATTA
1 TTAACTTAATCTTTAATTA
14830229 GTTTACCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAACTTAATCTTTAATTAA
Found at i:14830225 original size:16 final size:16
Alignment explanation
Indices: 14830186--14830228 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
14830176 TATACCATGA
14830186 TTAATCTTAATTAACT
1 TTAATCTTAATTAACT
14830202 TTAA--TTAATTAAC-
1 TTAATCTTAATTAACT
14830215 TTAATCTTTAATTA
1 TTAATC-TTAATTA
14830229 GTTTACCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 4 0.17
14 9 0.38
16 11 0.46
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATCTTAATTAACT
Found at i:14830233 original size:29 final size:31
Alignment explanation
Indices: 14830185--14830259 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
14830175 ATATACCATG
*
14830185 ATTAATC-TTAATTAACTTTA-ATTAATTAAC
1 ATTAATCTTTAATT-AGTTTACATTAATTAAC
* *
14830215 -TTAATCTTTAATTAGTTTACCTTAATTATC
1 ATTAATCTTTAATTAGTTTACATTAATTAAC
14830245 ATTAA-CTTT-ATTAGT
1 ATTAATCTTTAATTAGT
14830260 GGAAAATAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 17 0.44
30 18 0.46
31 4 0.10
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.51
Consensus pattern (31 bp):
ATTAATCTTTAATTAGTTTACATTAATTAAC
Found at i:14831482 original size:22 final size:22
Alignment explanation
Indices: 14831439--14831487 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14831429 GGATTATATC
* *
14831439 TATTTTTTATTTTTGTATTTAA
1 TATTTTTTATTTATGTACTTAA
14831461 TATTTTTTATCTTAT-TACTTAA
1 TATTTTTTAT-TTATGTACTTAA
14831483 -ATTTT
1 TATTTT
14831488 CATTCCATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.21
22 16 0.67
23 3 0.12
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (22 bp):
TATTTTTTATTTATGTACTTAA
Found at i:14833712 original size:29 final size:29
Alignment explanation
Indices: 14833649--14833712 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
14833639 TTTTGCCTCT
* * **
14833649 ATTTTTCAAATTTTACAATTTTTCTCCCT
1 ATTTTACAAATTTTACAATTTTACTCCAA
*
14833678 ACTTTACAAATTTTACAATTTTAC-CCAAA
1 ATTTTACAAATTTTACAATTTTACTCC-AA
14833707 ATTTTA
1 ATTTTA
14833713 TGATTTGTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (29 bp):
ATTTTACAAATTTTACAATTTTACTCCAA
Found at i:14834486 original size:5 final size:5
Alignment explanation
Indices: 14834476--14834503 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
14834466 CTGTGAGTTC
14834476 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14834504 CACAAATTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:14836555 original size:65 final size:66
Alignment explanation
Indices: 14836451--14836584 Score: 207
Period size: 65 Copynumber: 2.0 Consensus size: 66
14836441 GATCAACCGA
* ** * * *
14836451 TCTCCATCTGTTTTCATTGAGAAAAAGACTCCACAAGAGGTAT-GGTTGGTCATCTTGCTAATTA
1 TCTCCATCCGTTGCCATTGAGAAAAAGACTCCACAAGAGGTATGGGCTGGTAATCCTGCTAATTA
14836515 T
66 T
14836516 TCTCCATCCGTTGCCATTGAGAAAAAGACTCCACAAGAGGTATGGGCTGGTAATCCTGCTAATTA
1 TCTCCATCCGTTGCCATTGAGAAAAAGACTCCACAAGAGGTATGGGCTGGTAATCCTGCTAATTA
14836581 T
66 T
14836582 TCT
1 TCT
14836585 AATTTAAAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
65 40 0.65
66 22 0.35
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (66 bp):
TCTCCATCCGTTGCCATTGAGAAAAAGACTCCACAAGAGGTATGGGCTGGTAATCCTGCTAATTA
T
Found at i:14839972 original size:20 final size:19
Alignment explanation
Indices: 14839944--14839982 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14839934 ATAATATGAA
*
14839944 ATTTCAAAAAAATTATAAAT
1 ATTTAAAAAAAATT-TAAAT
*
14839964 ATTTAAAAAATATTTAAAT
1 ATTTAAAAAAAATTTAAAT
14839983 TAAAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
ATTTAAAAAAAATTTAAAT
Found at i:14839973 original size:19 final size:20
Alignment explanation
Indices: 14839944--14839982 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14839934 ATAATATGAA
14839944 ATTTCAAAAAA-ATTATAAAT
1 ATTTCAAAAAATATT-TAAAT
14839964 ATTT-AAAAAATATTTAAAT
1 ATTTCAAAAAATATTTAAAT
14839983 TAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTCAAAAAATATTTAAAT
Found at i:14840263 original size:30 final size:30
Alignment explanation
Indices: 14840229--14840286 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
14840219 TTAAACATTG
*
14840229 AAAAAATTCAAAAATATATATTTTCTATTT
1 AAAAAATTCAAAAATACATATTTTCTATTT
*
14840259 AAAAAATTGAAAAATACATATTTTCTAT
1 AAAAAATTCAAAAATACATATTTTCTAT
14840287 AAAAATTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (30 bp):
AAAAAATTCAAAAATACATATTTTCTATTT
Found at i:14840948 original size:108 final size:109
Alignment explanation
Indices: 14840753--14840964 Score: 327
Period size: 108 Copynumber: 2.0 Consensus size: 109
14840743 CACACATATA
* * **
14840753 CATGTGAAAACTTAAAACGCAAATGCTTGTTTAAAAATAACATACAATAAAAAATAACTGGTATG
1 CATGTGAAAACGTAAAACACAAATGCTTGTTTAAAAATAACATACAATAAAAAATAACCCGTATG
* *
14840818 GTTTGAAACTAATTATGCAACTAATGTAGATACTAAATTGTATG
66 GTTTGAAACTAATTATGCAACTAATATAGATAATAAATTGTATG
* * * *
14840862 CATGTGAAAACGTAAAACACAAATGCTTGTTTAAAAGTAA-ATATAATAAATAATGACCCGTATG
1 CATGTGAAAACGTAAAACACAAATGCTTGTTTAAAAATAACATACAATAAAAAATAACCCGTATG
14840926 GTTTGAAACTAATTATGCAACTAATATAGATAATAAATT
66 GTTTGAAACTAATTATGCAACTAATATAGATAATAAATT
14840965 ATATATACTA
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 56 0.60
109 37 0.40
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (109 bp):
CATGTGAAAACGTAAAACACAAATGCTTGTTTAAAAATAACATACAATAAAAAATAACCCGTATG
GTTTGAAACTAATTATGCAACTAATATAGATAATAAATTGTATG
Found at i:14841413 original size:21 final size:21
Alignment explanation
Indices: 14841371--14841415 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
14841361 GTTAATAAAT
* *
14841371 AAATAAAATCAGATAAATAAA
1 AAATAAAATCAGAAAAAGAAA
14841392 AAATAAAAT-ATGAAAAAGAAA
1 AAATAAAATCA-GAAAAAGAAA
14841413 AAA
1 AAA
14841416 GAAATATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.16
Consensus pattern (21 bp):
AAATAAAATCAGAAAAAGAAA
Found at i:14844569 original size:104 final size:103
Alignment explanation
Indices: 14844389--14844611 Score: 358
Period size: 104 Copynumber: 2.2 Consensus size: 103
14844379 TGTATATAAA
** * *
14844389 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
14844454 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGAGGTTGCTATGTGCTGATT-CCCCG
* *
14844493 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
14844557 TTGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
14844596 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
14844612 GATATCCATT
Statistics
Matches: 111, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
103 21 0.19
104 89 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
Found at i:14844631 original size:71 final size:71
Alignment explanation
Indices: 14844531--14844681 Score: 225
Period size: 71 Copynumber: 2.1 Consensus size: 71
14844521 TCATTGGTGG
* *
14844531 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAA-GGAGGTTGCTATGTGCTGATT-CCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATG-AAAATGG-GGTTGCTATGTGCTGATTCCCC
14844594 CGAGGGGT
64 CGAGGGGT
***
14844602 TGCTAAGTGCGATATCCATTGTATATTTGAAATGAAAATGGGGTTGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAATGGGGTTGCTATGTGCTGATTCCCCCG
14844667 AGGGGT
66 AGGGGT
14844673 TGCTAAGTG
1 TGCTAAGTG
14844682 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
70 21 0.29
71 52 0.71
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGAAAATGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:14852093 original size:104 final size:102
Alignment explanation
Indices: 14851932--14852153 Score: 356
Period size: 104 Copynumber: 2.2 Consensus size: 102
14851922 TGTATATAAA
** * *
14851932 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGTGGTGCTATGTGCGTGATCCACCATATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
*
14851997 GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTGAAAGGAGGTTGCTATGTGCTGATT-CCCCG
*
14852035 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCG-TGATCCACCATATCT
14852099 TTGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
64 TTGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
14852138 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
14852154 GATATCCATT
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
103 48 0.43
104 62 0.56
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGTGATCCACCATATCTTT
GAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
Found at i:14852199 original size:66 final size:68
Alignment explanation
Indices: 14852073--14852217 Score: 206
Period size: 66 Copynumber: 2.1 Consensus size: 68
14852063 TCATTGGTGG
*
14852073 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCA-CATATATTTGAAA-GTGAAAGGAGGTTGCTATGTGCTGATTCCCCG
14852138 AGGGGT
64 A-GGGT
* * *
14852144 TGCTAAGTGCGATATCCA-TTGTATTTGAAA-TGAAAGG-GGTTGTTATGTGCTGATTCCCCGAG
1 TGCTAAGTGCGATATCCACATATATTTGAAAGTGAAAGGAGGTTGCTATGTGCTGATTCCCCGAG
14852206 GGT
66 GGT
14852209 TGCTAAGTG
1 TGCTAAGTG
14852218 ATGATTCCCC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
65 13 0.19
66 23 0.33
67 7 0.10
69 9 0.13
71 18 0.26
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (68 bp):
TGCTAAGTGCGATATCCACATATATTTGAAAGTGAAAGGAGGTTGCTATGTGCTGATTCCCCGAG
GGT
Found at i:14852222 original size:25 final size:25
Alignment explanation
Indices: 14852180--14852229 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14852170 GAAATGAAAG
* * *
14852180 GGGTTGTTATGTGCTGATTCCCCGA
1 GGGTTGCTAAGTGATGATTCCCCGA
14852205 GGGTTGCTAAGTGATGATTCCCCGA
1 GGGTTGCTAAGTGATGATTCCCCGA
14852230 TTCAGTGGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.16, C:0.20, G:0.32, T:0.32
Consensus pattern (25 bp):
GGGTTGCTAAGTGATGATTCCCCGA
Found at i:14855862 original size:21 final size:21
Alignment explanation
Indices: 14855837--14855877 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14855827 TACTAGGTAG
14855837 ATAAAAAATGAATAC-TACGAT
1 ATAAAAAAT-AATACATACGAT
*
14855858 ATAAAGAATAATACATACGA
1 ATAAAAAATAATACATACGA
14855878 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (21 bp):
ATAAAAAATAATACATACGAT
Found at i:14856680 original size:17 final size:18
Alignment explanation
Indices: 14856632--14856710 Score: 78
Period size: 17 Copynumber: 4.5 Consensus size: 18
14856622 AAAAAAGATG
14856632 TAAAATAATAAT-T-TAA
1 TAAAATAATAATATATAA
*
14856648 GGAAAATAAT-ATATATAA
1 -TAAAATAATAATATATAA
14856666 T-AAATAATAATATATAA
1 TAAAATAATAATATATAA
*
14856683 TCAAA-AATAATACTCATAA
1 TAAAATAATAATA-T-ATAA
14856702 TAAAATAAT
1 TAAAATAAT
14856711 TTTATAATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
16 9 0.17
17 25 0.48
18 7 0.13
19 8 0.15
20 3 0.06
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (18 bp):
TAAAATAATAATATATAA
Found at i:14856683 original size:40 final size:42
Alignment explanation
Indices: 14856570--14856683 Score: 99
Period size: 42 Copynumber: 2.6 Consensus size: 42
14856560 ATTAAACAAT
* *
14856570 ATATATATAAGTAATTAATAAATATAATATATGTGAAAATATA
1 ATATATATAA-TAAATAATAAATATAATATAAGTGAAAATATA
* * * *
14856613 ATAATATATAAAAAAGATGTAAAATAATAATTTAAG-G-AAA-ATA
1 AT-ATATATAATAAATA-AT-AAAT-ATAATATAAGTGAAAATATA
14856656 ATATATATAATAAATAATAATATATAAT
1 ATATATATAATAAATAATAA-ATATAAT
14856684 CAAAAATAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
40 7 0.12
41 3 0.05
42 12 0.21
43 10 0.18
44 12 0.21
45 5 0.09
46 8 0.14
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (42 bp):
ATATATATAATAAATAATAAATATAATATAAGTGAAAATATA
Found at i:14856776 original size:21 final size:21
Alignment explanation
Indices: 14856750--14856789 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14856740 AAAATAAACA
*
14856750 AATAATAAAATATATATAGAG
1 AATAATAAAATAAATATAGAG
*
14856771 AATAATATAATAAATATAG
1 AATAATAAAATAAATATAG
14856790 GACTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
AATAATAAAATAAATATAGAG
Found at i:14858117 original size:10 final size:10
Alignment explanation
Indices: 14858057--14858130 Score: 60
Period size: 10 Copynumber: 7.0 Consensus size: 10
14858047 AATTTGGGCT
14858057 TTTACATATAA
1 TTTA-ATATAA
*
14858068 TTTAATAAAA
1 TTTAATATAA
*
14858078 ATTATATATAA
1 TTTA-ATATAA
14858089 TTTAATA-ACA
1 TTTAATATA-A
*
14858099 TTCTTAATATAT
1 -T-TTAATATAA
14858111 TTTAATATAA
1 TTTAATATAA
*
14858121 TTTAAAATAA
1 TTTAATATAA
14858131 AATATTAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
9 1 0.02
10 29 0.57
11 14 0.27
12 6 0.12
13 1 0.02
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (10 bp):
TTTAATATAA
Found at i:14858152 original size:18 final size:17
Alignment explanation
Indices: 14858131--14858177 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
14858121 TTTAAAATAA
*
14858131 AATATTAATATCTATATT
1 AATATTAATAT-TAAATT
*
14858149 AATATTTTATATTAAATT
1 AATA-TTAATATTAAATT
14858167 AA-ATTAATATT
1 AATATTAATATT
14858178 TTTTATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 7 0.28
17 1 0.04
18 11 0.44
19 6 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTAATATTAAATT
Found at i:14858172 original size:23 final size:23
Alignment explanation
Indices: 14858132--14858190 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
14858122 TTAAAATAAA
*
14858132 ATATTAATATCTATATTAATATTTT
1 ATATTAA-AT-TAAATTAATATTTT
14858157 ATATTAAATTAAATTAATATTTT
1 ATATTAAATTAAATTAATATTTT
*
14858180 TTATTAAATTA
1 ATATTAAATTA
14858191 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 23 0.72
24 2 0.06
25 7 0.22
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATTAAATTAAATTAATATTTT
Found at i:14861396 original size:20 final size:20
Alignment explanation
Indices: 14861363--14861402 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
14861353 TAGTTTTTTA
*
14861363 TAATTTATAAATTTATAAAT
1 TAATTTATAAATTTAAAAAT
**
14861383 TAATTTATTTATTTAAAAAT
1 TAATTTATAAATTTAAAAAT
14861403 AATAAAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATTTATAAATTTAAAAAT
Found at i:14862679 original size:17 final size:17
Alignment explanation
Indices: 14862632--14862689 Score: 63
Period size: 17 Copynumber: 3.7 Consensus size: 17
14862622 TTTATATATA
*
14862632 TTATATATA-TATAG-T
1 TTATATATATTTTAGAT
14862647 TTATA-AT-TTTTA-AT
1 TTATATATATTTTAGAT
14862661 TTATATATATTTTAGAT
1 TTATATATATTTTAGAT
*
14862678 TTTTATATATTT
1 TTATATATATTT
14862690 ATTTTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 11 0.31
15 7 0.19
16 5 0.14
17 13 0.36
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATATATATTTTAGAT
Found at i:14862680 original size:23 final size:23
Alignment explanation
Indices: 14862637--14862723 Score: 68
Period size: 23 Copynumber: 3.5 Consensus size: 23
14862627 ATATATTATA
14862637 TATATATAGTTTATAATTTTTAATT
1 TATATATA-TTTATAA-TTTTAATT
* *
14862662 TATATATATTT-TAGATTTTTATA
1 TATATATATTTATA-ATTTTAATT
* *
14862685 TATTTATTTTTATAAATTTGTAAAGTT
1 TATATATATTTAT-AATTT-T-AA-TT
14862712 TATATATATTTA
1 TATATATATTTA
14862724 ATAAAATAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
23 17 0.35
24 9 0.19
25 10 0.21
26 1 0.02
27 11 0.23
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (23 bp):
TATATATATTTATAATTTTAATT
Found at i:14863006 original size:3 final size:3
Alignment explanation
Indices: 14862998--14863029 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14862988 CCATGCATGC
14862998 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14863030 GTCTAATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14866711 original size:6 final size:6
Alignment explanation
Indices: 14866702--14866734 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
14866692 CACCGTAAGG
14866702 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
14866735 GCGGTATACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:14867858 original size:16 final size:15
Alignment explanation
Indices: 14867836--14867874 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
14867826 CTTTTTCTCC
14867836 TTCTTTCTCCCCTGT
1 TTCTTTCTCCCCTGT
* *
14867851 TTCGTTTCTTCTCTGT
1 TTC-TTTCTCCCCTGT
14867867 TTCTTTCT
1 TTCTTTCT
14867875 ATTCTTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (15 bp):
TTCTTTCTCCCCTGT
Found at i:14869434 original size:30 final size:30
Alignment explanation
Indices: 14869377--14869434 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14869367 ACAAATTTCA
* *
14869377 TTTTATTTTTATTTTAATTTGGCCCTAAAC
1 TTTTATTTTTATTTCAATTTAGCCCTAAAC
* *
14869407 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGCCCTAA
14869435 TGGCCATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.22, C:0.12, G:0.07, T:0.59
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAAAC
Found at i:14869744 original size:14 final size:14
Alignment explanation
Indices: 14869661--14869754 Score: 68
Period size: 14 Copynumber: 6.5 Consensus size: 14
14869651 GTAAAAATAG
14869661 TATATATTATTTTTAT
1 TATATA-TA-TTTTAT
*
14869677 T-TATATATTAT-T
1 TATATATATTTTAT
*
14869689 TACCATATTATTTATAT
1 TA-TATA-TATTT-TAT
**
14869706 TATCATATATTCCAT
1 TAT-ATATATTTTAT
*
14869721 T-TATAAATTTTAT
1 TATATATATTTTAT
14869734 TATATATATTTTAT
1 TATATATATTTTAT
14869748 TATATAT
1 TATATAT
14869755 TAACCCTTAC
Statistics
Matches: 61, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
12 2 0.03
13 12 0.20
14 24 0.39
15 11 0.18
16 6 0.10
17 6 0.10
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATATATTTTAT
Found at i:14869801 original size:7 final size:7
Alignment explanation
Indices: 14869765--14869806 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
14869755 TAACCCTTAC
14869765 ATTATTT
1 ATTATTT
14869772 -TTATTT
1 ATTATTT
*
14869778 CATTATAT
1 -ATTATTT
14869786 ATTATTTT
1 ATTA-TTT
14869794 ATTATTT
1 ATTATTT
14869801 ATTATT
1 ATTATT
14869807 AGTATATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
6 6 0.20
7 13 0.43
8 11 0.37
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (7 bp):
ATTATTT
Found at i:14870257 original size:14 final size:14
Alignment explanation
Indices: 14870238--14870264 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14870228 TTTGCATAAA
14870238 ATATTGTTATATTT
1 ATATTGTTATATTT
14870252 ATATTGTTATATT
1 ATATTGTTATATT
14870265 CATTGTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (14 bp):
ATATTGTTATATTT
Found at i:14870326 original size:64 final size:62
Alignment explanation
Indices: 14870252--14870373 Score: 172
Period size: 64 Copynumber: 1.9 Consensus size: 62
14870242 TGTTATATTT
* * *
14870252 ATATTGTTATATTCATTGTTTTCCATGTTATATTTTGCATAAAATGTTATTATGTATGTAATCA
1 ATATTATTATATTCATTGTTTTCCATGATATATCTTGCATAAAATGTTA--ATGTATGTAATCA
* * *
14870316 ATATTATTATATTCATTGTTTTCTATGATGTATCTTGCATGAAATGTTAATGTATGTA
1 ATATTATTATATTCATTGTTTTCCATGATATATCTTGCATAAAATGTTAATGTATGTA
14870374 TATTTAGGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 9 0.17
64 43 0.83
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (62 bp):
ATATTATTATATTCATTGTTTTCCATGATATATCTTGCATAAAATGTTAATGTATGTAATCA
Found at i:14877943 original size:14 final size:14
Alignment explanation
Indices: 14877924--14877950 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14877914 TTTGCATAAA
14877924 ATATTGTTATATTT
1 ATATTGTTATATTT
14877938 ATATTGTTATATT
1 ATATTGTTATATT
14877951 CATTGTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (14 bp):
ATATTGTTATATTT
Found at i:14882813 original size:8 final size:8
Alignment explanation
Indices: 14882800--14882825 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14882790 AAAACCAGGC
14882800 AAAAGATA
1 AAAAGATA
14882808 AAAAGATA
1 AAAAGATA
14882816 AAAAGATA
1 AAAAGATA
14882824 AA
1 AA
14882826 CAGGGAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (8 bp):
AAAAGATA
Found at i:14896045 original size:46 final size:46
Alignment explanation
Indices: 14895992--14896284 Score: 446
Period size: 46 Copynumber: 6.4 Consensus size: 46
14895982 TTCAAATGTG
*
14895992 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATAAAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
14896038 AAGACCATGGTTGAAAGATACCATGGCAAA-ATGACAGGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGG-AAACATGACAGGAAATGAAT
* * *
14896084 AAGACCATGGTTGAAAGATACCATGGTAACGTGACAAGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
* *
14896130 AAGACCAT-GTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
* *
14896175 AAGACCATGGTTGAAAGATACCATGGCAACATGACAAGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
* * *
14896221 AAGACCATGGTTGAAAGATACCATTGAAACATGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
* *
14896267 AAGACCGTAGTTGAAAGA
1 AAGACCATGGTTGAAAGA
14896285 CACTATGGCA
Statistics
Matches: 227, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 43 0.19
46 181 0.80
47 3 0.01
ACGTcount: A:0.46, C:0.14, G:0.23, T:0.18
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATGAAT
Found at i:14896160 original size:137 final size:138
Alignment explanation
Indices: 14895992--14896312 Score: 468
Period size: 137 Copynumber: 2.3 Consensus size: 138
14895982 TTCAAATGTG
* * *
14895992 AAGACCATGGTTGAAAGATACCATGGAAACATGACAGGAAATAAATAAGACCATGGTTGAAAGAT
1 AAGACCATAGTTGAAAGATACCATGGCAACATGACAGAAAATAAATAAGACCATGGTTGAAAGAT
* * *
14896057 ACCATGGCAAAATGACAGGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACGTGACA-A
66 ACCATGGCAAAATGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACAGA
14896121 GAAATGAAT
131 -AAATGAAT
*
14896130 AAGACCAT-GTTGAAAGATACCATGGCAACATGACAGAAAATGAATAAGACCATGGTTGAAAGAT
1 AAGACCATAGTTGAAAGATACCATGGCAACATGACAGAAAATAAATAAGACCATGGTTGAAAGAT
* *
14896194 ACCATGGCAACATGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATTGAAACATGACAGA
66 ACCATGGCAAAATGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACAGA
*
14896259 AAATGAGT
131 AAATGAAT
* * * * * *
14896267 AAGACCGTAGTTGAAAGACACTATGGCATCATGTCA-AAGATAAATA
1 AAGACCATAGTTGAAAGATACCATGGCAACATGACAGAAAATAAATA
14896313 CGACTGTGGA
Statistics
Matches: 165, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
137 133 0.81
138 32 0.19
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.19
Consensus pattern (138 bp):
AAGACCATAGTTGAAAGATACCATGGCAACATGACAGAAAATAAATAAGACCATGGTTGAAAGAT
ACCATGGCAAAATGACAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGAAACATGACAGA
AAATGAAT
Found at i:14896413 original size:26 final size:25
Alignment explanation
Indices: 14896382--14896451 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
14896372 ATCAGATGAT
*
14896382 GAATGGTTATATGAATTGGTTGTACAA
1 GAATGGTTATATGAAAT-GTT-TACAA
* *
14896409 -AATGGTTGTGTGAAATGTTTACAA
1 GAATGGTTATATGAAATGTTTACAA
14896433 GAATTGGTTATATGGAAAT
1 GAA-TGGTTATAT-GAAAT
14896452 ATATGTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
24 5 0.14
25 5 0.14
26 20 0.57
27 5 0.14
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (25 bp):
GAATGGTTATATGAAATGTTTACAA
Found at i:14899048 original size:20 final size:20
Alignment explanation
Indices: 14899020--14899063 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
14899010 TACCAACTTG
*
14899020 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
* *
14899040 CAACATACCATAGTTTTTCA
1 CAACATACCATAATCTTTCA
14899060 CAAC
1 CAAC
14899064 TTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:14899268 original size:42 final size:42
Alignment explanation
Indices: 14899149--14899270 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
14899139 TACCATACCA
* * ** *
14899149 ATGCCATATCTCAGATATGGTCTTACATGGGACCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
14899191 ATGCTAATAGCCCAGCTATGGTCTTATACGAAATCTCATATTG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
14899234 ATTCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
14899271 ACTAACATTA
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 32 0.51
43 31 0.49
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:14902618 original size:39 final size:39
Alignment explanation
Indices: 14902571--14902649 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
14902561 TGAATTCGGC
14902571 TTCTGAGATGAATCAATCGGTTTCTTTGGAGTAATTCCT
1 TTCTGAGATGAATCAATCGGTTTCTTTGGAGTAATTCCT
14902610 TTCTGAGATGAATCAATCGGTTTCTTTGGAGTAATTCCT
1 TTCTGAGATGAATCAATCGGTTTCTTTGGAGTAATTCCT
14902649 T
1 T
14902650 ACTCCCTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (39 bp):
TTCTGAGATGAATCAATCGGTTTCTTTGGAGTAATTCCT
Found at i:14927780 original size:3 final size:3
Alignment explanation
Indices: 14927772--14927805 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14927762 ATAATATCTT
*
14927772 TGA TGA TGA TGA TTA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
14927806 CATCATCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.38
Consensus pattern (3 bp):
TGA
Found at i:14931156 original size:3 final size:3
Alignment explanation
Indices: 14931148--14931185 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14931138 AAAGCCTGTC
14931148 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14931186 TTCTTTTGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14943287 original size:234 final size:234
Alignment explanation
Indices: 14942872--14943347 Score: 925
Period size: 234 Copynumber: 2.0 Consensus size: 234
14942862 GCTACAAAAA
*
14942872 AACCAGTCTCTGACATTTCTAAATGAACAGCTTCATAATCCCTAACCTTTCTTGAATTTTCTTCA
1 AACCAATCTCTGACATTTCTAAATGAACAGCTTCATAATCCCTAACCTTTCTTGAATTTTCTTCA
*
14942937 ATTTTTTTTCTGGTAGTTTGTGCTTTTTAGTAAGAAGATCATTGGGTAAGTTTAAGATCTAGAAG
66 ATTTTTTTTCTGGTAGTTTGTGCTTTTTAGTAAGAAGATCATTGGGTAAGTTTAAGATCTAGAAC
14943002 CCTAGAACAGATTCGACAGGTAATCTTTCTAACAAAAGGACAACATATGTTTGTTTCAATTTAAG
131 CCTAGAACAGATTCGACAGGTAATCTTTCTAACAAAAGGACAACATATGTTTGTTTCAATTTAAG
14943067 GCCTATTACAATCAGGTATTAATACTTGCAGTTGCTTAG
196 GCCTATTACAATCAGGTATTAATACTTGCAGTTGCTTAG
14943106 AACCAATCTCTGACATTTCTAAATGAACAGCTTCATAATCCCTAACCTTTCTTGAATTTTCTTCA
1 AACCAATCTCTGACATTTCTAAATGAACAGCTTCATAATCCCTAACCTTTCTTGAATTTTCTTCA
*
14943171 TTTTTTTTTCTGGTAGTTTGTGCTTTTTAGTAAGAAGATCATTGGGTAAGTTTAAGATCTAGAAC
66 ATTTTTTTTCTGGTAGTTTGTGCTTTTTAGTAAGAAGATCATTGGGTAAGTTTAAGATCTAGAAC
14943236 CCTAGAACAGATTCGACAGGTAATCTTTCTAACAAAAGGACAACATATGTTTGTTTCAATTTAAG
131 CCTAGAACAGATTCGACAGGTAATCTTTCTAACAAAAGGACAACATATGTTTGTTTCAATTTAAG
14943301 GCCTATTACAATCAGGTATTAATACTTGCAGTTGCTTAG
196 GCCTATTACAATCAGGTATTAATACTTGCAGTTGCTTAG
14943340 AACCAATC
1 AACCAATC
14943348 ATTGGTCCTT
Statistics
Matches: 239, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
234 239 1.00
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (234 bp):
AACCAATCTCTGACATTTCTAAATGAACAGCTTCATAATCCCTAACCTTTCTTGAATTTTCTTCA
ATTTTTTTTCTGGTAGTTTGTGCTTTTTAGTAAGAAGATCATTGGGTAAGTTTAAGATCTAGAAC
CCTAGAACAGATTCGACAGGTAATCTTTCTAACAAAAGGACAACATATGTTTGTTTCAATTTAAG
GCCTATTACAATCAGGTATTAATACTTGCAGTTGCTTAG
Found at i:14945617 original size:28 final size:28
Alignment explanation
Indices: 14945577--14945634 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
14945567 AAGAACTACC
14945577 TTCTTTTTAGCATTTTTCCCCTGCTAAG
1 TTCTTTTTAGCATTTTTCCCCTGCTAAG
14945605 TTCTTTTTAGCATTTTTCCCCTGCTAAG
1 TTCTTTTTAGCATTTTTCCCCTGCTAAG
14945633 TT
1 TT
14945635 TTCTTCTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.14, C:0.24, G:0.10, T:0.52
Consensus pattern (28 bp):
TTCTTTTTAGCATTTTTCCCCTGCTAAG
Found at i:14959560 original size:19 final size:17
Alignment explanation
Indices: 14959515--14959552 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14959505 AATTGTATAA
14959515 AATTAAAATTCATGTAT
1 AATTAAAATTCATGTAT
* *
14959532 CATTAAAATTCATGTGT
1 AATTAAAATTCATGTAT
14959549 AATT
1 AATT
14959553 TTAAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (17 bp):
AATTAAAATTCATGTAT
Found at i:14962939 original size:21 final size:21
Alignment explanation
Indices: 14962915--14962956 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14962905 AACTTCCTAC
*
14962915 TCCTACTAACTAGCTAACAAT
1 TCCTACTAACAAGCTAACAAT
14962936 TCCTACTAACAAGCTAACAAT
1 TCCTACTAACAAGCTAACAAT
14962957 CTCTCTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.29, G:0.05, T:0.26
Consensus pattern (21 bp):
TCCTACTAACAAGCTAACAAT
Found at i:14965453 original size:21 final size:22
Alignment explanation
Indices: 14965407--14965454 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
14965397 ACTAGAAGAT
*
14965407 AATTGAAGAAAAAGGTGTTTAG
1 AATTGAAGAAAAAGATGTTTAG
14965429 AATTGAAGAAAAAGATGTTTA-
1 AATTGAAGAAAAAGATGTTTAG
14965450 AATTG
1 AATTG
14965455 GTTATAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.29
Consensus pattern (22 bp):
AATTGAAGAAAAAGATGTTTAG
Found at i:14966082 original size:25 final size:26
Alignment explanation
Indices: 14966048--14966111 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 26
14966038 TCTCTAAAGC
*
14966048 TAGTATTAGCAGCATCGAACC-AAGA
1 TAGTGTTAGCAGCATCGAACCGAAGA
* * * * *
14966073 TAGTGTTAGCAACCTTGATCCGAAGC
1 TAGTGTTAGCAGCATCGAACCGAAGA
14966099 TAGTGTTAGCAGC
1 TAGTGTTAGCAGC
14966112 CCGATAATGT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (26 bp):
TAGTGTTAGCAGCATCGAACCGAAGA
Found at i:14967156 original size:39 final size:40
Alignment explanation
Indices: 14967113--14967246 Score: 141
Period size: 39 Copynumber: 3.5 Consensus size: 40
14967103 ACTAGCTCGA
* * *
14967113 AGCCTGCGGGA-CTTTAGCCCAGACATATTTCCAGCACGT
1 AGCCTGCGGGACCTTAAGCCCAGACATAATTCCAGCACAT
* * *
14967152 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCAGACATAATTCCAGCACAT
* * * *
14967191 AGCCTGC-GGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCAGACATAATTCCAGCACAT
*
14967230 AGCCTGC-GGACCCTAAG
1 AGCCTGCGGGACCTTAAG
14967247 TTCGGATATA
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 3 0.03
39 84 0.97
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCAGACATAATTCCAGCACAT
Found at i:14967247 original size:39 final size:39
Alignment explanation
Indices: 14967141--14967256 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
14967131 CCAGACATAT
* *
14967141 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
14967180 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
14967219 TTCCAGCACATAGCCTGCGGACCCTAAGTTCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
14967257 CATCACTGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:14969865 original size:561 final size:560
Alignment explanation
Indices: 14968318--14969967 Score: 3273
Period size: 560 Copynumber: 2.9 Consensus size: 560
14968308 TAAGCATAAT
14968318 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
1 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
14968383 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
66 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
14968448 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
131 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
*
14968513 TCATTAAAGCAATCACCTATTTAATTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
196 TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
14968578 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
261 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
14968643 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
326 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
14968708 ACACTACTCATTACACATATACATCAACTAAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTAT
391 ACACTACTCATTACACATATACATCAACT-AAAAAAAAATTCTCACTCCTTAGCTATTGCCGTAT
14968773 GGTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAA
455 GGTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAA
14968838 ATAATATCATCTTTAACACATTTATCAATCTTCCAATTAAA
520 ATAATATCATCTTTAACACATTTATCAATCTTCCAATTAAA
14968879 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
1 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
14968944 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
66 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
14969009 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
131 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
14969074 TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
196 TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
14969139 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
261 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
14969204 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
326 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
14969269 ACACTACTCATTACACATATACATCAACTAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTATG
391 ACACTACTCATTACACATATACATCAACTAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTATG
14969334 GTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAAA
456 GTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAAA
14969399 TAATATCATCTTTAACACATTTATCAATCTTCCAATTAAA
521 TAATATCATCTTTAACACATTTATCAATCTTCCAATTAAA
14969439 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
1 CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
14969504 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
66 ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
14969569 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
131 TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
*
14969634 TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTATATACTAACATATCTCCCAAGGCCGAA
196 TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
14969699 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
261 TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
14969764 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
326 GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
14969829 ACACTACTCATTACACATATACATCAACTAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTATG
391 ACACTACTCATTACACATATACATCAACTAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTATG
14969894 GTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAAA
456 GTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAAA
14969959 TAATATCAT
521 TAATATCAT
14969968 TTAAACAGCC
Statistics
Matches: 1087, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
560 669 0.62
561 418 0.38
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (560 bp):
CTCAATACAATACATCGTGTTCAAATCATTATTCAAGTTCAAATTCGGCTAGCACACATATACAT
ACTAGCAACTAAGTATTAACATTGCATTTCATACTATAACCGAATGTATAGCTCATCAAAATATA
TTTATTCATGTTCCCTTAACACATATTGGTCAACTAGATCATGCATTATTCTTTGGCACATTTGG
TCATTAAAGCAATCACCTATTTAACTTTCAAGCATTTTTATACTAACATATCTCCCAAGGCCGAA
TTCATATACAATCTTTAGTACTCATTTAAAGTTAATATTTTAAGTAATTTATATACACAACATTA
GCCAAATATCCATTTACTAAGCATTTTAACAAATTTTCTATTACCAAATAAATCACATATATATA
ACACTACTCATTACACATATACATCAACTAAAAAAAAATTCTCACTCCTTAGCTATTGCCGTATG
GTTATATAAGTCTTGAGTCATCTTTAACACATTTATCAATCTTCCAATTCAACTTAATACAAAAA
TAATATCATCTTTAACACATTTATCAATCTTCCAATTAAA
Found at i:14970728 original size:22 final size:21
Alignment explanation
Indices: 14970688--14970728 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14970678 TTTGTTCTTC
*
14970688 TTTTCTTATTTCAATTAATAT
1 TTTTCTTATTTCAAATAATAT
*
14970709 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
14970729 GCAAATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTCTTATTTCAAATAATAT
Found at i:14971449 original size:19 final size:19
Alignment explanation
Indices: 14971422--14971459 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14971412 GTAAATTTCG
14971422 TATGAACTTACTAAGCATT
1 TATGAACTTACTAAGCATT
*
14971441 TATGGACTTACTAAGCATT
1 TATGAACTTACTAAGCATT
14971460 CAAAATGCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (19 bp):
TATGAACTTACTAAGCATT
Found at i:14973792 original size:22 final size:22
Alignment explanation
Indices: 14973766--14973824 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 22
14973756 CCTGAGCTGA
14973766 TAAACAGTAAGCTCCGAAGAGC
1 TAAACAGTAAGCTCCGAAGAGC
* *
14973788 TAAACGGTAAGCCCCGAAGAGC
1 TAAACAGTAAGCTCCGAAGAGC
14973810 TGAAACAGTAAGCTC
1 T-AAACAGTAAGCTC
14973825 ATATAAGCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 21 0.66
23 11 0.34
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.14
Consensus pattern (22 bp):
TAAACAGTAAGCTCCGAAGAGC
Found at i:14977676 original size:24 final size:24
Alignment explanation
Indices: 14977649--14977713 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
14977639 TACAAACTTA
*
14977649 CCATAAAGGCACCTGCAAAATATG
1 CCATAAAGGCACCTACAAAATATG
* *
14977673 CCATAAAGGCACTTACAGAATATG
1 CCATAAAGGCACCTACAAAATATG
* * *
14977697 CCACAAGGGCACTTACA
1 CCATAAAGGCACCTACA
14977714 TAATTGATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (24 bp):
CCATAAAGGCACCTACAAAATATG
Found at i:14980921 original size:43 final size:43
Alignment explanation
Indices: 14980871--14981021 Score: 169
Period size: 43 Copynumber: 3.5 Consensus size: 43
14980861 ATTTCCGAAT
* * *
14980871 ATGGTCTTACATGTTATCAGATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGAC
* * * * * *
14980914 AGGGTCTTACACGAAATCATATAACGATGTCAATGTCCAAGAC
1 ATGGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGAC
* * *
14980957 ATGGTCTTACACGTAATCATA-ATACAATGCCAATGTCTCAGAC
1 ATGGTCTTACACGTAATCAGATAT-CGATGCCAATGTCCCAGAC
*
14981000 ATGGTCTTACATGTAATCAGAT
1 ATGGTCTTACACGTAATCAGAT
14981022 CTCGGTAAAT
Statistics
Matches: 88, Mismatches: 18, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 87 0.99
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAGATATCGATGCCAATGTCCCAGAC
Found at i:14986285 original size:314 final size:316
Alignment explanation
Indices: 14985533--14986393 Score: 1324
Period size: 318 Copynumber: 2.7 Consensus size: 316
14985523 TTGAAAATTA
* * * *
14985533 ACACATTACTAGGTATAAATACTACTTACGTGCTAATTACATTATGGA-AAAGCAAATAATGGAG
1 ACACATTACTAGGTATAAATACTACTTACGTACTAATTATATTA-CGACAAAGAAAATAATGGAG
* *
14985597 AGATGATTTATAAACAGCATGAAAATAAATTCTAAAGTAAACTATCTAAATTTCAATCAAATTGT
65 AGATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAAATTGT
* *
14985662 AAT-AGCTCGATTTTCAATAGTGTCAGAAACAGTGGTATTAGAACCACAGTTTTGATGAGTGAGT
130 AATGA-CTCGATTTTCAATAGTGTCAGAAACAGTGGTATTAGGACCACGGTTTTGATGAGTGAGT
14985726 CAATAAATATTATTCATTAATATTTACAAGTCTGTTATAGTGTTATATCAATTCTTGAATTGGTA
194 CAATAAATATTATTCATTAATATTTACAAGTCTGTTATAGTGTTATATCAATTCTTGAATTGGTA
** * *
14985791 ATTTGGTTGAAAAGTTAGCAATGTAGATGCAAGGACTAAACTGTAAGAATGGTAAAAGTT
259 ATTTCATT--AAAGCTAGCAATGTAGATACAAGGACTAAACTGTAAGAATGGTAAAAGTT
* * * *
14985851 ACACATTACTAGGTATAAATACTACTTACGTAGTAAATATAGTACGACAAAGAAAATAATAGAGA
1 ACACATTACTAGGTATAAATACTACTTACGTACTAATTATATTACGACAAAGAAAATAATGGAGA
*
14985916 GATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAATTTGTA
66 GATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAAATTGTA
14985981 ATGACTCGATTTTCAATAGTGTC-GAAAACAGTGGTATTAGGACCACGGTTTTGATGAGTGAGTC
131 ATGACTCGATTTTCAATAGTGTCAG-AAACAGTGGTATTAGGACCACGGTTTTGATGAGTGAGTC
14986045 AATAAATATTATTCATTAATATTTACAAGTCTGTTATAGTGTTATATCAATTCTTGAATTGGTAA
195 AATAAATATTATTCATTAATATTTACAAGTCTGTTATAGTGTTATATCAATTCTTGAATTGGTAA
* * * * *
14986110 TTTCATT-TA-CTAGTAATGTAGATATAATGACTAAACTGTAAGTATGGTAAAAGTT
260 TTTCATTAAAGCTAGCAATGTAGATACAAGGACTAAACTGTAAGAATGGTAAAAGTT
*
14986165 ACACATTATTAGGTATAAATACTACTTACGTACTAATTATATTACGACAAAGAAAATAATGGAGA
1 ACACATTACTAGGTATAAATACTACTTACGTACTAATTATATTACGACAAAGAAAATAATGGAGA
*
14986230 TATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAAATTGTA
66 GATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAAATTGTA
* * * * * * *
14986295 ACGGCTC-AGTTTTCAGT--TGTCAGAAATAGTGGTATTAGGACCATGATTTTGATGAGTGAGTT
131 ATGACTCGA-TTTTCAATAGTGTCAGAAACAGTGGTATTAGGACCACGGTTTTGATGAGTGAGTC
*
14986357 AATAAATATTATTCATTAATATTTACAAGTCCGTTAT
195 AATAAATATTATTCATTAATATTTACAAGTCTGTTAT
14986394 TGTAACGCCC
Statistics
Matches: 501, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
312 75 0.15
313 2 0.00
314 175 0.35
315 1 0.00
317 3 0.01
318 244 0.49
319 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (316 bp):
ACACATTACTAGGTATAAATACTACTTACGTACTAATTATATTACGACAAAGAAAATAATGGAGA
GATGATTTATAAACAACATGAAAATAAATTCTAAAGTAAACTATCCAAATTTCAATCAAATTGTA
ATGACTCGATTTTCAATAGTGTCAGAAACAGTGGTATTAGGACCACGGTTTTGATGAGTGAGTCA
ATAAATATTATTCATTAATATTTACAAGTCTGTTATAGTGTTATATCAATTCTTGAATTGGTAAT
TTCATTAAAGCTAGCAATGTAGATACAAGGACTAAACTGTAAGAATGGTAAAAGTT
Found at i:14987814 original size:93 final size:93
Alignment explanation
Indices: 14987702--14987871 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 93
14987692 CGCCCATAAG
* *
14987702 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
14987767 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
*
14987795 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14987860 ACAAGTTCGGAT
66 ACAAGTTCGGAT
14987872 ACTCAACCAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:14987870 original size:46 final size:46
Alignment explanation
Indices: 14987695--14987870 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
14987685 TGTAACCCGC
* * *
14987695 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
14987741 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
14987791 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
14987834 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
14987871 TACTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:14996745 original size:22 final size:23
Alignment explanation
Indices: 14996720--14996765 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14996710 CAACCAAATC
14996720 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
14996742 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
14996765 A
1 A
14996766 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:14996771 original size:23 final size:23
Alignment explanation
Indices: 14996727--14996771 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14996717 ATCAATTCAA
*
14996727 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
14996750 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
14996772 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:15008835 original size:53 final size:52
Alignment explanation
Indices: 15008739--15008838 Score: 128
Period size: 53 Copynumber: 1.9 Consensus size: 52
15008729 CTACTGACTT
* * *
15008739 GGGTCACACAGCCAACCACACACCCGTGTGCTAGGCCGTGTGTGAAGTGCAG
1 GGGTCACACAGCCAACCACACACCCGTGTACTAGGCAGCGTGTGAAGTGCAG
* * * *
15008791 GGGTTACACGGCCAAGCCATACACCCTTGTACTAGGCAGCGTGTGAAG
1 GGGTCACACAGCCAA-CCACACACCCGTGTACTAGGCAGCGTGTGAAG
15008839 ACCTGGGCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
52 13 0.32
53 27 0.68
ACGTcount: A:0.24, C:0.29, G:0.30, T:0.17
Consensus pattern (52 bp):
GGGTCACACAGCCAACCACACACCCGTGTACTAGGCAGCGTGTGAAGTGCAG
Found at i:15009686 original size:21 final size:21
Alignment explanation
Indices: 15009660--15009752 Score: 73
Period size: 21 Copynumber: 4.4 Consensus size: 21
15009650 CAGAAGTGCT
*
15009660 AACAGAAACTCGTAAGGGTTG
1 AACAGAAACTCGTAAGAGTTG
* * *
15009681 AACAGAAGCTCATAAGAGATG
1 AACAGAAACTCGTAAGAGTTG
* * *
15009702 AACGAAAAAC-CAGT-AGGGTTA
1 AAC-AGAAACTC-GTAAGAGTTG
*
15009723 AACTGAAACTCGTAAGAGTTG
1 AACAGAAACTCGTAAGAGTTG
*
15009744 AACTGAAAC
1 AACAGAAAC
15009753 CCATTAGGGT
Statistics
Matches: 54, Mismatches: 14, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
20 6 0.11
21 43 0.80
22 5 0.09
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.17
Consensus pattern (21 bp):
AACAGAAACTCGTAAGAGTTG
Found at i:15009739 original size:42 final size:41
Alignment explanation
Indices: 15009674--15009777 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
15009664 GAAACTCGTA
* *
15009674 AGGGTTGAACAGAAGCTCATAAGAGATGAAC-GAAAAACCAGT
1 AGGGTT-AACTGAAACTCATAAGAGATGAACTG-AAAACCAGT
* * * *
15009716 AGGGTTAAACTGAAACTCGTAAGAGTTGAACTGAAACCCATT
1 AGGGTT-AACTGAAACTCATAAGAGATGAACTGAAAACCAGT
*
15009758 AGGGTTAATTGAAACTCATA
1 AGGGTTAACTGAAACTCATA
15009778 TAAATTAACT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
41 12 0.23
42 39 0.75
43 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (41 bp):
AGGGTTAACTGAAACTCATAAGAGATGAACTGAAAACCAGT
Found at i:15011683 original size:260 final size:260
Alignment explanation
Indices: 15011202--15011685 Score: 794
Period size: 260 Copynumber: 1.9 Consensus size: 260
15011192 AGTGGATATT
* *
15011202 AAGATTCTCTTGTTTCGAAGAAATAAAATATCACATCCAGCACGTACGACACAATATTTCAAACC
1 AAGATTCTCTTGTTTCGAAGAAACAAAATATCACATCCAACACGTACGACACAATATTTCAAACC
*
15011267 TTCGATATCAAAATCATCTCATAATTTCTAAATTTATGTATTGAAATTTTAAGAAGGACATTCGG
66 TTCGATATCAAAATCATCTCATAATTTCCAAATTTATGTATTGAAATTTTAAGAAGGACATTCGG
*
15011332 TCGTTCGGTCAAACGATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAAATTCTAAACA
131 TCGTTCGGTCAAACAATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAAATTCTAAACA
* * *
15011397 ATGGAATATTGCCTTTTTTTTTAAAAAAAAAGTCTTGAGTAAAAATGCAATAATATGAAACGATC
196 ACGGAATATTGCCTTTTATGTTAAAAAAAAAGTCTTGAGTAAAAATGCAATAATATGAAACGATC
* * *
15011462 AAGATTTTCTTGTTTCGAAGAAACAAAATATCACATCCAACACGTAGGACACGATATTTCAAACC
1 AAGATTCTCTTGTTTCGAAGAAACAAAATATCACATCCAACACGTACGACACAATATTTCAAACC
*
15011527 TTCGATATCAAAATCATCTCATAATTTCCAAATTTATGTATTGAAATTTTAAGAAGGATATTCGG
66 TTCGATATCAAAATCATCTCATAATTTCCAAATTTATGTATTGAAATTTTAAGAAGGACATTCGG
* *
15011592 TCGTTCGGTCAAACAATAAATCGAAACCCAAG-ACGTAGGGCACGACTTTCTCG-AAATTTTCAA
131 TCGTTCGGTCAAACAATAAATCGAAACCC-AGCACGTAGGGCAC-AATTTCTCGAAAATTCT-AA
*
15011655 ACAACGGAATTTTGCC-TTTATGTTAAAAAAA
193 ACAACGGAATATTGCCTTTTATGTTAAAAAAA
15011686 TCCTTTTTTA
Statistics
Matches: 207, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
260 181 0.87
261 26 0.13
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (260 bp):
AAGATTCTCTTGTTTCGAAGAAACAAAATATCACATCCAACACGTACGACACAATATTTCAAACC
TTCGATATCAAAATCATCTCATAATTTCCAAATTTATGTATTGAAATTTTAAGAAGGACATTCGG
TCGTTCGGTCAAACAATAAATCGAAACCCAGCACGTAGGGCACAATTTCTCGAAAATTCTAAACA
ACGGAATATTGCCTTTTATGTTAAAAAAAAAGTCTTGAGTAAAAATGCAATAATATGAAACGATC
Found at i:15012010 original size:23 final size:23
Alignment explanation
Indices: 15011965--15012016 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
15011955 GGATGGTGAG
* * *
15011965 AATAATAATGATAATAACCATAT
1 AATAAGAATGACAATAACAATAT
*
15011988 AATAAGAATGACAATAATAATAT
1 AATAAGAATGACAATAACAATAT
*
15012011 TATAAG
1 AATAAG
15012017 TGAAAACCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.29
Consensus pattern (23 bp):
AATAAGAATGACAATAACAATAT
Found at i:15012096 original size:3 final size:3
Alignment explanation
Indices: 15012088--15012138 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
15012078 GACTACATAG
* * *
15012088 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TGA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15012136 TAA
1 TAA
15012139 ATATTTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15012330 original size:27 final size:27
Alignment explanation
Indices: 15012242--15012331 Score: 78
Period size: 27 Copynumber: 3.3 Consensus size: 27
15012232 ATATATATTA
* *
15012242 ATTTAAAATACAAAGATGCATATAAAA-
1 ATTTAAAATA-AATGATACATATAAAAT
* * * *
15012269 ATTTCAAGATAAATGTTACGTAT--GAT
1 ATTT-AAAATAAATGATACATATAAAAT
15012295 AGTTTAAAATAAATGATACATATAAAAT
1 A-TTTAAAATAAATGATACATATAAAAT
15012323 ATTTAAAAT
1 ATTTAAAAT
15012332 TGATAACAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
25 1 0.02
26 16 0.33
27 23 0.48
28 8 0.17
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (27 bp):
ATTTAAAATAAATGATACATATAAAAT
Found at i:15012395 original size:24 final size:24
Alignment explanation
Indices: 15012363--15012408 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15012353 TGATATGTTC
*
15012363 AAAAGTAATGACAAT-AATAATAGT
1 AAAAATAATGA-AATAAATAATAGT
15012387 AAAAATAATGAAATAAATAATA
1 AAAAATAATGAAATAAATAATA
15012409 TAACGTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.24
Consensus pattern (24 bp):
AAAAATAATGAAATAAATAATAGT
Found at i:15012707 original size:18 final size:18
Alignment explanation
Indices: 15012681--15012721 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
15012671 ATGATGAATG
15012681 AATAAATAATAAAACAAT
1 AATAAATAATAAAACAAT
* *
15012699 AATAGATAATAAAATAAT
1 AATAAATAATAAAACAAT
15012717 AATAA
1 AATAA
15012722 CAAAGGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
AATAAATAATAAAACAAT
Found at i:15013568 original size:16 final size:16
Alignment explanation
Indices: 15013547--15013578 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15013537 ATTATTTTAA
*
15013547 GGTTTAAGGATTATGG
1 GGTTTAAAGATTATGG
15013563 GGTTTAAAGATTATGG
1 GGTTTAAAGATTATGG
15013579 TTTAAGGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
GGTTTAAAGATTATGG
Found at i:15013928 original size:21 final size:21
Alignment explanation
Indices: 15013868--15013991 Score: 92
Period size: 21 Copynumber: 5.9 Consensus size: 21
15013858 TAAGGGTCGG
* *
15013868 GGTTTAAGGTTTAGGGGTTAAA
1 GGTTTAGGGTTTA-GGGTTATA
15013890 GG-TTACGGG-TTACGGGTTATA
1 GGTTTA-GGGTTTA-GGGTTATA
*
15013911 GGTTTAGGGTTTATGGTT-TA
1 GGTTTAGGGTTTAGGGTTATA
* * * * *
15013931 TGTGTAAGGTTTATGGTTTTA
1 GGTTTAGGGTTTAGGGTTATA
**
15013952 TGGTTTAGGGTTTAGGGTTAGG
1 -GGTTTAGGGTTTAGGGTTATA
*
15013974 GGTTTAGGTTTTAGGGTT
1 GGTTTAGGGTTTAGGGTT
15013992 TATGAAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
20 17 0.21
21 41 0.50
22 24 0.29
ACGTcount: A:0.18, C:0.02, G:0.37, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTATA
Found at i:15013957 original size:35 final size:35
Alignment explanation
Indices: 15013896--15013995 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 35
15013886 TAAAGGTTAC
15013896 GGGTTACG-GGTTATAGG-TTTAGGGTTTATGGTTTA
1 GGGTTA-GAGGTT-TAGGTTTTAGGGTTTATGGTTTA
* * *
15013931 -TGTGTA-AGGTTTATGGTTTTATGGTTTAGGGTTTA
1 GGGT-TAGAGGTTTA-GGTTTTAGGGTTTATGGTTTA
*
15013966 GGGTTAGGGGTTTAGGTTTTAGGGTTTATG
1 GGGTTAGAGGTTTAGGTTTTAGGGTTTATG
15013996 AAATATGGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
33 2 0.04
34 8 0.15
35 34 0.65
36 8 0.15
ACGTcount: A:0.16, C:0.01, G:0.37, T:0.46
Consensus pattern (35 bp):
GGGTTAGAGGTTTAGGTTTTAGGGTTTATGGTTTA
Found at i:15013983 original size:42 final size:41
Alignment explanation
Indices: 15013937--15014073 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 41
15013927 TTTATGTGTA
* *
15013937 AGGTTTATGGTTTTATGGTTTAGGGTTTAGGGTTAGGGGTTT
1 AGGTTTATGGGTTTATGGATTAGGGTTTAGGGTT-GGGGTTT
* * *
15013979 AGGTTT-TAGGGTTTATGAAATATGGTTTAAGGGTTGGGGTTT
1 AGGTTTAT-GGGTTTATGGATTAGGGTTT-AGGGTTGGGGTTT
* * *
15014021 AAGGTTTAGGGGTTAAT-GATTACGGGTTATGGGGTTGGGGTTT
1 -AGGTTTATGGGTTTATGGATTA-GGGTT-TAGGGTTGGGGTTT
15014064 ATGGTTTATG
1 A-GGTTTATG
15014074 TGTATGGTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 32 0.42
43 42 0.55
44 1 0.01
ACGTcount: A:0.18, C:0.01, G:0.38, T:0.43
Consensus pattern (41 bp):
AGGTTTATGGGTTTATGGATTAGGGTTTAGGGTTGGGGTTT
Found at i:15013991 original size:8 final size:7
Alignment explanation
Indices: 15013867--15013993 Score: 75
Period size: 7 Copynumber: 18.0 Consensus size: 7
15013857 TTAAGGGTCG
15013867 GGGTTTA
1 GGGTTTA
*
15013874 AGGTTTA
1 GGGTTTA
*
15013881 GGGGTTAA
1 -GGGTTTA
*
15013889 AGG-TTA
1 GGGTTTA
15013895 CGGG-TTA
1 -GGGTTTA
15013902 CGGGTTATA
1 -GGGTT-TA
15013911 -GGTTTA
1 GGGTTTA
15013917 GGGTTTA
1 GGGTTTA
*
15013924 TGGTTTA
1 GGGTTTA
* *
15013931 -TGTGTA
1 GGGTTTA
*
15013937 AGGTTTA
1 GGGTTTA
*
15013944 TGGTTTTA
1 -GGGTTTA
*
15013952 TGGTTTA
1 GGGTTTA
15013959 GGGTTTA
1 GGGTTTA
15013966 GGG-TTA
1 GGGTTTA
15013972 GGGGTTTA
1 -GGGTTTA
*
15013980 GGTTTTA
1 GGGTTTA
15013987 GGGTTTA
1 GGGTTTA
15013994 TGAAATATGG
Statistics
Matches: 93, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
6 11 0.12
7 66 0.71
8 14 0.15
9 2 0.02
ACGTcount: A:0.18, C:0.02, G:0.37, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:15014019 original size:14 final size:15
Alignment explanation
Indices: 15014002--15014034 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15013992 TATGAAATAT
15014002 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
15014016 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
15014031 GGTT
1 GGTT
15014035 AATGATTACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:15014266 original size:14 final size:14
Alignment explanation
Indices: 15014230--15014266 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
15014220 GAAAAAAATG
15014230 AAATTATTTAGATT
1 AAATTATTTAGATT
15014244 AAATT-TTTAGATT
1 AAATTATTTAGATT
15014257 AAATTATTTA
1 AAATTATTTA
15014267 AGAGATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (14 bp):
AAATTATTTAGATT
Done.