Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 49 of 356
Found at i:16072773 original size:12 final size:13
Alignment explanation
Indices: 16072748--16072786 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
16072738 ATATTTTAAA
16072748 AAAAAAGTATATAT
1 AAAAAAGTA-ATAT
16072762 AAAAAA-TAATAT
1 AAAAAAGTAATAT
*
16072774 AAAAAATTAATAT
1 AAAAAAGTAATAT
16072787 GGGCCAGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 10 0.42
13 8 0.33
14 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAAAAAGTAATAT
Found at i:16080948 original size:9 final size:9
Alignment explanation
Indices: 16080934--16080963 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
16080924 AGATGACGAG
16080934 AAATGGTAC
1 AAATGGTAC
16080943 AAATGGTAC
1 AAATGGTAC
16080952 AAATGGTAC
1 AAATGGTAC
16080961 AAA
1 AAA
16080964 GGCTCCGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.20
Consensus pattern (9 bp):
AAATGGTAC
Found at i:16091208 original size:9 final size:9
Alignment explanation
Indices: 16091108--16091389 Score: 52
Period size: 9 Copynumber: 28.9 Consensus size: 9
16091098 ATATTTTCCC
16091108 ATAAAAATT
1 ATAAAAATT
*
16091117 ATTGAAAAATA
1 A-T-AAAAATT
* *
16091128 AAAAAAAAT
1 ATAAAAATT
* *
16091137 ATTAATATT
1 ATAAAAATT
* *
16091146 ATTAATATT
1 ATAAAAATT
16091155 -TAAAATATT
1 ATAAAA-ATT
*
16091164 -TAAAAAATA
1 AT-AAAAATT
*
16091173 ATTAAAATT
1 ATAAAAATT
*
16091182 GATATAAACTT
1 -ATA-AAAATT
*
16091193 GTAAAAATT
1 ATAAAAATT
16091202 ATAAAAAAATT
1 AT--AAAAATT
*
16091213 AATGAAAACTT
1 -AT-AAAAATT
*
16091224 ATAAATATT
1 ATAAAAATT
16091233 ATTAAAAATAT
1 A-TAAAAAT-T
*
16091244 AAAAAAATCT
1 ATAAAAAT-T
*
16091254 A-ACAAATT
1 ATAAAAATT
*
16091262 TTAATAAATT
1 ATAA-AAATT
*
16091272 AT-AAAGTT
1 ATAAAAATT
*
16091280 AATAAAAAAT
1 -ATAAAAATT
*
16091290 ACTTAAAATTTT
1 A--TAAAA-ATT
16091302 ATAAAAATGT
1 ATAAAAAT-T
*
16091312 AAAAAAATT
1 ATAAAAATT
*
16091321 CTTAACAACTTATT
1 -ATAA-AA---ATT
* *
16091335 AAAAAAATC
1 ATAAAAATT
16091344 ATAAAAATT
1 ATAAAAATT
*
16091353 -TTAAAATT
1 ATAAAAATT
*
16091361 GATATAAAGTT
1 -ATA-AAAATT
*
16091372 ATAATAATT
1 ATAAAAATT
16091381 ATTAAAAAT
1 A-TAAAAAT
16091390 ATCATGAAAA
Statistics
Matches: 195, Mismatches: 49, Indels: 57
0.65 0.16 0.19
Matches are distributed among these distances:
8 15 0.08
9 69 0.35
10 61 0.31
11 39 0.20
12 6 0.03
13 2 0.01
14 3 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (9 bp):
ATAAAAATT
Found at i:16091249 original size:29 final size:29
Alignment explanation
Indices: 16091108--16091391 Score: 79
Period size: 28 Copynumber: 9.7 Consensus size: 29
16091098 ATATTTTCCC
**
16091108 ATAAAAATTATTGAAAAATA-AAAAAAAAT
1 ATAAAAATTATT-AAAAATATAAAAAACTT
* * * * * *
16091137 ATTAATATTATT-AATATTTAAAATATTT
1 ATAAAAATTATTAAAAATATAAAAAACTT
* * *
16091165 A-AAAAATAATTAAAATTGAT-ATAAACTT
1 ATAAAAATTATTAAAAAT-ATAAAAAACTT
* *
16091193 GTAAAAATTA-TAAAAAAATTAATGAAAACTT
1 ATAAAAATTATTAAAAATA-TAA--AAAACTT
* *
16091224 ATAAATATTATTAAAAATATAAAAAAATCT
1 ATAAAAATTATTAAAAATATAAAAAACT-T
* * *
16091254 A-ACAAATT-TTAATAAAT-T-ATAAAGTT
1 ATAAAAATTATTAA-AAATATAAAAAACTT
* * *
16091280 AATAAAAAATACTTAAAATTTTATAAAAA-TGT
1 -ATAAAAATTA-TTAAAAATATA-AAAAACT-T
* * * * *
16091312 AAAAAAATTCTTAACAACTTATTAAAAAAATC
1 ATAAAAATTATTAA-AA-ATA-TAAAAAACTT
* * *
16091344 ATAAAAATT-TTAAAATTGAT-ATAAAGTT
1 ATAAAAATTATTAAAAAT-ATAAAAAACTT
*
16091372 ATAATAATTATTAAAAATAT
1 ATAAAAATTATTAAAAATAT
16091392 CATGAAAACA
Statistics
Matches: 186, Mismatches: 44, Indels: 51
0.66 0.16 0.18
Matches are distributed among these distances:
26 1 0.01
27 18 0.10
28 46 0.25
29 46 0.25
30 14 0.08
31 31 0.17
32 27 0.15
33 3 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (29 bp):
ATAAAAATTATTAAAAATATAAAAAACTT
Found at i:16091934 original size:9 final size:9
Alignment explanation
Indices: 16091912--16092119 Score: 72
Period size: 10 Copynumber: 22.0 Consensus size: 9
16091902 CAATTCAAGT
*
16091912 TTTTTATGAT
1 TTTTTAT-AA
16091922 TTTTTATAA
1 TTTTTATAA
16091931 TTTTTATAA
1 TTTTTATAA
*
16091940 GTTTATATCAA
1 -TTTTTAT-AA
*
16091951 -TTTAAT-A
1 TTTTTATAA
16091958 TTTTTAATAA
1 TTTTT-ATAA
*
16091968 TTTTTATGAT
1 TTTTTAT-AA
16091978 TTTTTATAAA
1 TTTTTAT-AA
*
16091988 TTTTTAAGAA
1 TTTTT-ATAA
*
16091998 TTTTTATACG
1 TTTTTATA-A
16092008 TTTTTATAAA
1 TTTTTAT-AA
*
16092018 ATTTTA-AA
1 TTTTTATAA
*
16092026 TATTTACT-A
1 TTTTTA-TAA
16092035 TTAATTT-TAA
1 TT--TTTATAA
*
16092045 TTTATTAAAA
1 TTT-TTATAA
*
16092055 TTTATTA-GA
1 TTT-TTATAA
*
16092064 TTTATTAGT-T
1 TTT-TTA-TAA
16092074 TTTTTATAA
1 TTTTTATAA
*
16092083 TATTTA-AA
1 TTTTTATAA
*
16092091 GTTTTTAGTAG
1 -TTTTTA-TAA
16092102 TTTTTATAA
1 TTTTTATAA
*
16092111 TTTTCATAA
1 TTTTTATAA
16092120 GCCTTGTAGA
Statistics
Matches: 151, Mismatches: 25, Indels: 45
0.68 0.11 0.20
Matches are distributed among these distances:
7 1 0.01
8 13 0.09
9 56 0.37
10 73 0.48
11 8 0.05
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:16091936 original size:19 final size:19
Alignment explanation
Indices: 16091912--16092005 Score: 93
Period size: 19 Copynumber: 4.9 Consensus size: 19
16091902 CAATTCAAGT
16091912 TTTTTATGATTTTTTATAA
1 TTTTTATGATTTTTTATAA
* * *
16091931 TTTTTATAAGTTTATATCAA
1 TTTTTATGATTTTTTAT-AA
* *
16091951 -TTTAAT-ATTTTTAATAA
1 TTTTTATGATTTTTTATAA
16091968 TTTTTATGATTTTTTATAAA
1 TTTTTATGATTTTTTAT-AA
* *
16091988 TTTTTAAGAATTTTTATA
1 TTTTTATGATTTTTTATA
16092006 CGTTTTTATA
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.03
18 11 0.18
19 28 0.47
20 19 0.32
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (19 bp):
TTTTTATGATTTTTTATAA
Found at i:16091990 original size:37 final size:37
Alignment explanation
Indices: 16091920--16091990 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
16091910 GTTTTTTATG
* *
16091920 ATTTTTTATAATTTTTATAAGTTTATATCAATTTAAT
1 ATTTTTAATAATTTTTATAAGTTTATATAAATTTAAT
* * *
16091957 ATTTTTAATAATTTTTATGATTTTTTATAAATTT
1 ATTTTTAATAATTTTTATAAGTTTATATAAATTT
16091991 TTAAGAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (37 bp):
ATTTTTAATAATTTTTATAAGTTTATATAAATTTAAT
Found at i:16091993 original size:30 final size:29
Alignment explanation
Indices: 16091912--16092024 Score: 99
Period size: 30 Copynumber: 3.9 Consensus size: 29
16091902 CAATTCAAGT
16091912 TTTTTATGATTTTTTAT-AATTTTT-ATAA
1 TTTTTAT-ATTTTTTATAAATTTTTAATAA
* ** *
16091940 -GTTTATATCAATTTA-ATATTTTTAATAA
1 TTTTTATAT-TTTTTATAAATTTTTAATAA
*
16091968 TTTTTATGATTTTTTATAAATTTTTAAGAA
1 TTTTTAT-ATTTTTTATAAATTTTTAATAA
* *
16091998 TTTTTATACGTTTTTATAAAATTTTAA
1 TTTTTATA-TTTTTTATAAATTTTTAA
16092025 ATATTTACTA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
26 2 0.03
27 15 0.22
28 4 0.06
29 10 0.15
30 36 0.54
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (29 bp):
TTTTTATATTTTTTATAAATTTTTAATAA
Found at i:16094917 original size:21 final size:21
Alignment explanation
Indices: 16094893--16094945 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
16094883 CATTGTTTCT
16094893 AATCTCACCGCTACAGT-ATCC
1 AATCTCACCGCTACAGTAAT-C
*
16094914 AATCTCACCGCTACAGTAATT
1 AATCTCACCGCTACAGTAATC
16094935 AATCTCACCGC
1 AATCTCACCGC
16094946 CACTGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAATC
Found at i:16096634 original size:21 final size:21
Alignment explanation
Indices: 16096610--16096657 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
16096600 TATATTTATA
16096610 TTTTTAATA-ATGTTAATAACC
1 TTTTTAATATAT-TTAATAACC
* * *
16096631 TTTTTTATATATTTTATATCC
1 TTTTTAATATATTTAATAACC
16096652 TTTTTA
1 TTTTTA
16096658 TGGTTTATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTTAATATATTTAATAACC
Found at i:16097886 original size:146 final size:146
Alignment explanation
Indices: 16097621--16097916 Score: 402
Period size: 146 Copynumber: 2.0 Consensus size: 146
16097611 AAATAGTTAG
16097621 TATTTAGTACACAAGCAACCTTAAAAAATTGACATATGTCTCTTTTTTAAAATGTTTTATTAATA
1 TATTTAGTACACAAGCAACCTTAAAAAATTGACATATGTCTCTTTTTTAAAATGTTTTATTAATA
* * * *
16097686 TTTTATATACCTCTATAAGACACTTGTCATCCCATTGATGTTACTTGTGTAGTCTAAAAACTTCA
66 CTTTATATACCTCTATAAGACACTTGTCATCCCATTGACGTTACTTGTGGAGTCTAAAAACTCCA
16097751 CTCACAATATACCGAA
131 CTCACAATATACCGAA
* * * * * * *
16097767 TATTTGGTACGCAAGTAACCTTAAAAAATTGACATGTTTCTCGTTTTTTAATTAT-TTTT-TTTA
1 TATTTAGTACACAAGCAACCTTAAAAAATTGACATATGTCTC-TTTTTTAA-AATGTTTTATTAA
16097830 TACTTTATATACCTCTATAAGACACTTGTCAATCCC-TTGACG-TAGCTTGTGGAGTCTAAAAAC
64 TACTTTATATACCTCTATAAGACACTTGTC-ATCCCATTGACGTTA-CTTGTGGAGTCTAAAAAC
* * *
16097893 TCCACTGACAATGTGCCGAA
127 TCCACTCACAATATACCGAA
16097913 TATT
1 TATT
16097917 ATTCCATAAA
Statistics
Matches: 132, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
145 2 0.02
146 111 0.84
147 17 0.13
148 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (146 bp):
TATTTAGTACACAAGCAACCTTAAAAAATTGACATATGTCTCTTTTTTAAAATGTTTTATTAATA
CTTTATATACCTCTATAAGACACTTGTCATCCCATTGACGTTACTTGTGGAGTCTAAAAACTCCA
CTCACAATATACCGAA
Found at i:16098035 original size:13 final size:14
Alignment explanation
Indices: 16098017--16098046 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
16098007 GTAATTATAA
16098017 AAACAAA-AATATT
1 AAACAAAGAATATT
16098030 AAACAAAGAATATT
1 AAACAAAGAATATT
16098044 AAA
1 AAA
16098047 ATTTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (14 bp):
AAACAAAGAATATT
Found at i:16100949 original size:18 final size:18
Alignment explanation
Indices: 16100923--16100969 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
16100913 TTAATTATTA
16100923 ATAAAAATTATAATAAAT
1 ATAAAAATTATAATAAAT
* *
16100941 ATAAGAATTATCATAAATTT
1 ATAAAAATTATAATAAA--T
16100961 ATAAAAATT
1 ATAAAAATT
16100970 GAGACAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
20 9 0.38
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAAAAATTATAATAAAT
Found at i:16101504 original size:20 final size:19
Alignment explanation
Indices: 16101480--16101538 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 19
16101470 ATTATAAAAA
16101480 ATAAAAATAAATAAAAATT
1 ATAAAAATAAATAAAAATT
** *
16101499 ATTAAATTTTAATAAAAA-T
1 A-TAAAAATAAATAAAAATT
*
16101518 ATAATAAATAATTAAAAATT
1 ATAA-AAATAAATAAAAATT
16101538 A
1 A
16101539 GAATAAATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 3 0.10
19 12 0.40
20 15 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAAAATAAATAAAAATT
Found at i:16101544 original size:31 final size:30
Alignment explanation
Indices: 16101479--16101551 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
16101469 AATTATAAAA
* **
16101479 AATAAAAATAAATAAAAATTATTAAATTTT
1 AATAAAAATAAATAAAAATTATAAAATTAG
16101509 AATAAAAATATAATAAATAATTA-AAAATTAG
1 AATAAAAATA-AATAAA-AATTATAAAATTAG
*
16101540 AATAAATATAAA
1 AATAAAAATAAA
16101552 ATTACATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
30 12 0.32
31 20 0.54
32 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (30 bp):
AATAAAAATAAATAAAAATTATAAAATTAG
Found at i:16101657 original size:21 final size:21
Alignment explanation
Indices: 16101633--16101698 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
16101623 GATTTTTGTA
*
16101633 ATTTGTTCTCTAATTTTTAAT
1 ATTTGTTTTCTAATTTTTAAT
16101654 ATTT-TTTTACT-ATTTTT-AT
1 ATTTGTTTT-CTAATTTTTAAT
*
16101673 GATGTGTTTTCTAATTTTTAAT
1 -ATTTGTTTTCTAATTTTTAAT
16101695 ATTT
1 ATTT
16101699 TTATATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
19 2 0.05
20 14 0.38
21 19 0.51
22 2 0.05
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (21 bp):
ATTTGTTTTCTAATTTTTAAT
Found at i:16101669 original size:41 final size:41
Alignment explanation
Indices: 16101608--16101700 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
16101598 CTTTATAAAA
* *
16101608 TTTT-ATA-TTTTTTACGATTTTTGTAATTTGTTCTCTAAT
1 TTTTAATATTTTTTTACGATTTTTATAATGTGTTCTCTAAT
* * *
16101647 TTTTAATATTTTTTTACTATTTTTATGATGTGTTTTCTAAT
1 TTTTAATATTTTTTTACGATTTTTATAATGTGTTCTCTAAT
16101688 TTTTAATATTTTT
1 TTTTAATATTTTT
16101701 ATATTTTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.09
40 3 0.06
41 40 0.85
ACGTcount: A:0.22, C:0.05, G:0.06, T:0.67
Consensus pattern (41 bp):
TTTTAATATTTTTTTACGATTTTTATAATGTGTTCTCTAAT
Found at i:16101730 original size:9 final size:9
Alignment explanation
Indices: 16101679--16101749 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
16101669 TTATGATGTG
*
16101679 TTTTCTAAT
1 TTTTATAAT
16101688 TTTTA-ATAT
1 TTTTATA-AT
16101697 TTTTAT-AT
1 TTTTATAAT
*
16101705 TTTTATTAAAA
1 TTTTA-T-AAT
16101716 TTTTATAAT
1 TTTTATAAT
*
16101725 TTTTATAAG
1 TTTTATAAT
*
16101734 TTTAATTAAT
1 TTTTA-TAAT
16101744 TTTTAT
1 TTTTAT
16101750 TTTTCATCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
8 8 0.16
9 27 0.55
10 8 0.16
11 6 0.12
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:16101747 original size:28 final size:28
Alignment explanation
Indices: 16101684--16101749 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
16101674 ATGTGTTTTC
* *
16101684 TAATTTTTA-ATATTTTTATATTTTTAT
1 TAATTTTTATATATTTTTATAGTTTAAT
*
16101711 TAAAATTTTATA-ATTTTTATAAGTTTAAT
1 T-AATTTTTATATATTTTTAT-AGTTTAAT
16101740 TAATTTTTAT
1 TAATTTTTAT
16101750 TTTTCATCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 23 0.72
29 8 0.25
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (28 bp):
TAATTTTTATATATTTTTATAGTTTAAT
Found at i:16101941 original size:78 final size:80
Alignment explanation
Indices: 16101849--16101996 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 80
16101839 CCAAATGACA
* * * *
16101849 TTTTTGATGCATTTTGACAGTTCAAGTATCTAATTAAGTAAAAAAA-AACTTAATTACTTTTTT-
1 TTTTTGATGCATTTTAAAAATTCAAGTATCCAATTAAGTAAAAAAATAACTTAATTACTTTTTTC
16101912 TTAAATGTAAGGTCT
66 TTAAATGTAAGGTCT
* * * * *
16101927 TTTTTTATGTATTTTAAAAATTTAAGTATCCAATTAAGTAAAAAAATTACTTAATTATTTTTTTC
1 TTTTTGATGCATTTTAAAAATTCAAGTATCCAATTAAGTAAAAAAATAACTTAATTACTTTTTTC
16101992 TTAAA
66 TTAAA
16101997 AAAAATGAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 39 0.66
79 15 0.25
80 5 0.08
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (80 bp):
TTTTTGATGCATTTTAAAAATTCAAGTATCCAATTAAGTAAAAAAATAACTTAATTACTTTTTTC
TTAAATGTAAGGTCT
Found at i:16102569 original size:15 final size:16
Alignment explanation
Indices: 16102551--16102584 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
16102541 TTTAAACACG
*
16102551 ATATAGTT-ATATAAA
1 ATATAGTTAAAATAAA
16102566 ATATAGTTAAAATAAA
1 ATATAGTTAAAATAAA
16102582 ATA
1 ATA
16102585 AAATAGAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (16 bp):
ATATAGTTAAAATAAA
Found at i:16103334 original size:9 final size:8
Alignment explanation
Indices: 16103304--16103333 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
16103294 TAAATTTAAT
16103304 TTTTAACA
1 TTTTAACA
16103312 TTTTAACA
1 TTTTAACA
16103320 TTTTATACA
1 TTTTA-ACA
16103329 TTTTA
1 TTTTA
16103334 TCAATTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTAACA
Found at i:16103503 original size:22 final size:22
Alignment explanation
Indices: 16103478--16103527 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
16103468 GTATAAAGTT
* *
16103478 TAAATTAAAAATTAAAAACATA
1 TAAAATAAAAATTAAAAAAATA
*
16103500 TAAAATATAAATTAAAAAAATA
1 TAAAATAAAAATTAAAAAAATA
16103522 TAAAAT
1 TAAAAT
16103528 TGGTAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAATAAAAATTAAAAAAATA
Found at i:16106993 original size:2 final size:2
Alignment explanation
Indices: 16106986--16107010 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16106976 CAAAAACTTA
16106986 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
16107011 AAAGGAGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16108939 original size:25 final size:22
Alignment explanation
Indices: 16108881--16108924 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
16108871 ATAAAAGTTA
*
16108881 AAATGCAAAATAATATTATTAT
1 AAATGAAAAATAATATTATTAT
16108903 AAATGAAAAATAATATTATTAT
1 AAATGAAAAATAATATTATTAT
16108925 CTACATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (22 bp):
AAATGAAAAATAATATTATTAT
Found at i:16109947 original size:19 final size:18
Alignment explanation
Indices: 16109923--16109968 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
16109913 ATTATCATAT
* *
16109923 TTTTATTACCTATGTTTTA
1 TTTTATTAACTAT-TGTTA
*
16109942 TTTTATTAATTATTGTTA
1 TTTTATTAACTATTGTTA
16109960 TTTTATTAA
1 TTTTATTAA
16109969 AATTTTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTATTAACTATTGTTA
Found at i:16114062 original size:6 final size:6
Alignment explanation
Indices: 16114047--16114112 Score: 123
Period size: 6 Copynumber: 10.8 Consensus size: 6
16114037 GGATACGGGT
16114047 TAAAACA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
1 TAAAA-A TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
16114096 TAAAAA TAAAAA TAAAA
1 TAAAAA TAAAAA TAAAA
16114113 CAAATAAACT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 54 0.92
7 5 0.08
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:16119981 original size:14 final size:14
Alignment explanation
Indices: 16119962--16120028 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
16119952 TGATTGTTTT
16119962 TAATCTAAATTTAC
1 TAATCTAAATTTAC
16119976 TAATCT-AATTTAAC
1 TAATCTAAATTT-AC
**
16119990 T-A-C-AAATTGTTTT
1 TAATCTAAA-T-TTAC
16120003 TAATCTAAATTTAC
1 TAATCTAAATTTAC
16120017 TAATCT-AATTTA
1 TAATCTAAATTTA
16120029 ACTACAAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
12 3 0.07
13 14 0.33
14 20 0.48
15 2 0.05
16 3 0.07
ACGTcount: A:0.40, C:0.12, G:0.01, T:0.46
Consensus pattern (14 bp):
TAATCTAAATTTAC
Found at i:16119999 original size:41 final size:41
Alignment explanation
Indices: 16119954--16120036 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
16119944 AATTGAAGTG
16119954 ATTGTTTTTAATCTAAATTTACTAATCTAATTTAACTACAA
1 ATTGTTTTTAATCTAAATTTACTAATCTAATTTAACTACAA
16119995 ATTGTTTTTAATCTAAATTTACTAATCTAATTTAACTACAA
1 ATTGTTTTTAATCTAAATTTACTAATCTAATTTAACTACAA
16120036 A
1 A
16120037 CACAACAGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (41 bp):
ATTGTTTTTAATCTAAATTTACTAATCTAATTTAACTACAA
Found at i:16120284 original size:69 final size:69
Alignment explanation
Indices: 16120211--16120348 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 69
16120201 TTCGAGAGTA
*
16120211 AGAACAATTGACTCTAGGTTGATTGATTGAAATCTCTTTCTAATTAAAACCCTTATTGTCCCATT
1 AGAACAACTGACTCTAGGTTGATTGATTGAAATCTCTTTCTAATTAAAACCCTTATTGTCCCATT
16120276 AACT
66 AACT
**
16120280 AGAACAACTGACTCTAGGTTGATTGATTGAAATCTCTTTCTAATTAAAACCCTTATTGTTGCATT
1 AGAACAACTGACTCTAGGTTGATTGATTGAAATCTCTTTCTAATTAAAACCCTTATTGTCCCATT
16120345 AACT
66 AACT
16120349 CGATCTATGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (69 bp):
AGAACAACTGACTCTAGGTTGATTGATTGAAATCTCTTTCTAATTAAAACCCTTATTGTCCCATT
AACT
Found at i:16121153 original size:14 final size:14
Alignment explanation
Indices: 16121111--16121152 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
16121101 TTTAATGAGA
16121111 TATT-TTATTATTT
1 TATTATTATTATTT
16121124 TATTATTATTATTT
1 TATTATTATTATTT
*
16121138 TATTGTTAATTATTT
1 TATTATT-ATTATTT
16121153 AGTATAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 4 0.15
14 15 0.58
15 7 0.27
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (14 bp):
TATTATTATTATTT
Found at i:16125911 original size:80 final size:81
Alignment explanation
Indices: 16125774--16125959 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 81
16125764 TTGAATGATG
* * *
16125774 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATT
16125838 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
16125853 TTCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGACCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCAT
*
16125917 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
16125934 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
16125960 AACGAGGTGC
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 83 0.91
81 8 0.09
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:16125973 original size:40 final size:40
Alignment explanation
Indices: 16125775--16125959 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
16125765 TGAATGATGT
* * * * *
16125775 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
** * * *
16125815 CCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTA-ATT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
16125855 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
16125894 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
16125935 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTG
16125960 AACGAGGTGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:16125977 original size:80 final size:80
Alignment explanation
Indices: 16125775--16125982 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 80
16125765 TGAATGATGT
* * * ** * *
16125775 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTG-CTATATCCGGGTTAAGACCCGAAGGCATTT
*
16125839 GTGCGAGATACTAATT
65 GTGCGAGATACTAATA
* * * *
16125855 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTGCTATATCCGGGTTAAGACCCGAAGGCATTTG
*
16125920 TGCGAGTTACT-ATAA
66 TGCGAGATACTAAT-A
* **
16125935 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGTGCTATATCC-GGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTGCTATATCCGGGTTAA
16125983 ATTCCGAAGG
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
79 8 0.08
80 89 0.84
81 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGTGCTATATCCGGGTTAAGACCCGAAGGCATTTG
TGCGAGATACTAATA
Found at i:16126856 original size:13 final size:13
Alignment explanation
Indices: 16126838--16126864 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16126828 CCTCCAGGCT
16126838 CTAAGCCCAAGAA
1 CTAAGCCCAAGAA
16126851 CTAAGCCCAAGAA
1 CTAAGCCCAAGAA
16126864 C
1 C
16126865 AATTCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.33, G:0.15, T:0.07
Consensus pattern (13 bp):
CTAAGCCCAAGAA
Found at i:16126879 original size:7 final size:7
Alignment explanation
Indices: 16126867--16126918 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
16126857 CCAAGAACAA
16126867 TTCATGT
1 TTCATGT
16126874 TTCATGT
1 TTCATGT
*
16126881 TTCACGAT
1 TTCATG-T
16126889 TTCATGT
1 TTCATGT
**
16126896 TTCATAC
1 TTCATGT
*
16126903 TGCATGT
1 TTCATGT
16126910 TTCATGT
1 TTCATGT
16126917 TT
1 TT
16126919 TCTTCTGTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (7 bp):
TTCATGT
Found at i:16127228 original size:37 final size:37
Alignment explanation
Indices: 16127164--16127268 Score: 140
Period size: 37 Copynumber: 2.9 Consensus size: 37
16127154 TGTGTTAAAG
* *
16127164 ACTTATGTAATG-TTTTAAATATTTAGTGATTCAAAA
1 ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
* * * *
16127200 ATTTATGTAATGTTTTTAGTTATGTAGTGATTCAAAG
1 ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
*
16127237 ACTTATGTAATTTTTTTAATTATATAGTGATT
1 ACTTATGTAATGTTTTTAATTATATAGTGATT
16127269 TAAATCGGTT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
36 11 0.19
37 48 0.81
ACGTcount: A:0.33, C:0.04, G:0.13, T:0.50
Consensus pattern (37 bp):
ACTTATGTAATGTTTTTAATTATATAGTGATTCAAAA
Found at i:16127287 original size:9 final size:9
Alignment explanation
Indices: 16127268--16127360 Score: 134
Period size: 9 Copynumber: 10.4 Consensus size: 9
16127258 ATATAGTGAT
16127268 TTAAATCGG
1 TTAAATCGG
* *
16127277 TTAAGTTGG
1 TTAAATCGG
16127286 TTAAATCGG
1 TTAAATCGG
16127295 TTAAATCGG
1 TTAAATCGG
16127304 TTAAATCGG
1 TTAAATCGG
16127313 TTAAATCGG
1 TTAAATCGG
*
16127322 TTAAGTCGG
1 TTAAATCGG
*
16127331 CT-AATCGG
1 TTAAATCGG
*
16127339 TTAAATAGG
1 TTAAATCGG
16127348 TTAAATCGG
1 TTAAATCGG
16127357 TTAA
1 TTAA
16127361 TTTTTAACCA
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
8 6 0.08
9 67 0.92
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.34
Consensus pattern (9 bp):
TTAAATCGG
Found at i:16127536 original size:12 final size:12
Alignment explanation
Indices: 16127519--16127543 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16127509 AACTAATTCG
16127519 GGTCGGTTAACC
1 GGTCGGTTAACC
16127531 GGTCGGTTAACC
1 GGTCGGTTAACC
16127543 G
1 G
16127544 AATGCACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:16134716 original size:40 final size:40
Alignment explanation
Indices: 16134619--16134804 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
16134609 TTGAATGATG
* * * * * *
16134619 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
** * * * *
16134659 TCCGGACTAAGATCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16134699 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
16134739 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AA
* * * *
16134780 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGACCCGAAGGCATTTG
16134805 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
40 112 0.93
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16134793 original size:80 final size:81
Alignment explanation
Indices: 16134623--16134804 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 81
16134613 ATGATGTCCG
* * *
16134623 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATTTGTG
* **
16134687 CGAGATACTAATTCTG
66 CGAGATACTAATACCA
* * * * **
16134703 GGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATTTGTG
*
16134767 CGAGTTACT-ATAACCA
66 CGAGATACTAAT-ACCA
*
16134783 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
16134805 AACGAGGAGC
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 2 0.02
80 76 0.89
81 7 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCATTTGTG
CGAGATACTAATACCA
Found at i:16134822 original size:80 final size:80
Alignment explanation
Indices: 16134623--16134827 Score: 193
Period size: 80 Copynumber: 2.6 Consensus size: 80
16134613 ATGATGTCCG
** * * ** * *
16134623 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCCTTTGTG
1 GGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTATATCCGGGTTAAGACCCGAAGGCATTTGTG
* **
16134687 CGAGATACTAATTCTG
65 CGAGATACTAATACCA
* ** * *
16134703 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGTTAAGACCCGAAGGCATTTGTGC
*
16134768 GAGTTACT-ATAACCA
66 GAGATACTAAT-ACCA
*
16134783 GGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 GGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATATCCGGGTTAA
16134828 ATTCCGAAGG
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 9 0.09
80 87 0.84
81 7 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGTTAAGACCCGAAGGCATTTGTGC
GAGATACTAATACCA
Found at i:16140455 original size:46 final size:46
Alignment explanation
Indices: 16140229--16140456 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
16140219 TTATCTTCGA
* * * * *
16140229 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATGT
**
16140275 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
16140321 CATGTTGCCATGGTATCCTTCAACCATGGTCTTATACATTTCATTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
* * *
16140367 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACTTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
16140413 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
16140457 TTCAGAAACC
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGT
Found at i:16141355 original size:51 final size:51
Alignment explanation
Indices: 16141272--16141386 Score: 185
Period size: 51 Copynumber: 2.3 Consensus size: 51
16141262 TCAAACTTAC
* * *
16141272 TTCATACTTCATCTGGAATTATTACTTTGTTGCCCTAGCTTTAACAAGAGC
1 TTCATATTTCATCTGGAATTATTACTTTGTTGCCCTAGCTTCAACAAGAGA
* *
16141323 TTCGTATTTCATCTGGAATTATTACTTTGTTGCTCTAGCTTCAACAAGAGA
1 TTCATATTTCATCTGGAATTATTACTTTGTTGCCCTAGCTTCAACAAGAGA
16141374 TTCATATTTCATC
1 TTCATATTTCATC
16141387 CGGATAACTT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (51 bp):
TTCATATTTCATCTGGAATTATTACTTTGTTGCCCTAGCTTCAACAAGAGA
Found at i:16142843 original size:24 final size:24
Alignment explanation
Indices: 16142792--16142837 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
16142782 AATCAATGTC
* *
16142792 AAATATATTATGCTAATAAATGCA
1 AAATATATTATACTAATAAATACA
*
16142816 AAATATATTATATTAATAAATA
1 AAATATATTATACTAATAAATA
16142838 TTAAATCTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACA
Found at i:16143608 original size:62 final size:57
Alignment explanation
Indices: 16143540--16143678 Score: 161
Period size: 62 Copynumber: 2.3 Consensus size: 57
16143530 TTGTTATTAA
* * * * * *
16143540 ATTTTAATAAAATTATTATTAAATATATTTTTATTAAAAATAATAATAAATAATTCAATCAT
1 ATTTTAATATAATTATTATTAAATATA-ATTTAAT-AAAATAAT-AT--ACAATTCAATAAC
*
16143602 ATTTTAACATAATTATTATTAAATATAATTTAATAAAATAATATACAATTCAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAATAATATACAATTCAATAAC
16143659 ATTCTTAATATAATTATTAT
1 ATT-TTAATATAATTATTAT
16143679 ATGAATTAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
57 13 0.19
58 15 0.22
59 2 0.03
60 8 0.12
61 5 0.07
62 25 0.37
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (57 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAATAATATACAATTCAATAAC
Found at i:16146839 original size:20 final size:21
Alignment explanation
Indices: 16146797--16146836 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
16146787 TTGACAATCA
*
16146797 AAGAATGAAACAAAAAAAAAC
1 AAGAATCAAACAAAAAAAAAC
16146818 AAGAATCAAACAAAAAAAA
1 AAGAATCAAACAAAAAAAA
16146837 CAACCGGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.78, C:0.10, G:0.07, T:0.05
Consensus pattern (21 bp):
AAGAATCAAACAAAAAAAAAC
Found at i:16149215 original size:14 final size:14
Alignment explanation
Indices: 16149195--16149233 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
16149185 TTGTAACTTG
*
16149195 CACAACTTGCATAT
1 CACAACTTGCAAAT
* *
16149209 TACAACTTGTAAAT
1 CACAACTTGCAAAT
16149223 CACAACTTGCA
1 CACAACTTGCA
16149234 CAATTAGGTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (14 bp):
CACAACTTGCAAAT
Found at i:16150253 original size:13 final size:13
Alignment explanation
Indices: 16150235--16150262 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
16150225 ACATATTATA
16150235 AATATTTTGTGTT
1 AATATTTTGTGTT
16150248 AATATTTTGTGTT
1 AATATTTTGTGTT
16150261 AA
1 AA
16150263 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:16151830 original size:40 final size:40
Alignment explanation
Indices: 16151787--16151967 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
16151777 GGACTAAGAT
*
16151787 CCGAAGGCATTCGTGCGGGTTATTATAACCGGACTAAGAT-
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAG-TC
** *
16151827 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCGGGTTATTATAACCGGGCTAAGTC
* *
16151867 CCAAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTC
*
16151907 CCGAAGGCATTCGTGCGGGTTATTATAATCGGGCTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTC
*
16151947 CCGAAGGCATTCGTGCTGGTT
1 CCGAAGGCATTCGTGCGGGTT
16151968 GTTACATTCG
Statistics
Matches: 127, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 4 0.03
40 120 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTC
Found at i:16151991 original size:40 final size:40
Alignment explanation
Indices: 16151787--16151991 Score: 135
Period size: 40 Copynumber: 5.1 Consensus size: 40
16151777 GGACTAAGAT
* * * *
16151787 CCGAAGGCATTCGTGCGGGTTATTATAACCGGACTAAGAT-
1 CCGAAGGCATTCGTGCGGGTTATTACAATCGAACCAAG-TC
** * * ****
16151827 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCGGGTTATTACAATCGAACCAAGTC
* * * ****
16151867 CCAAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTACAATCGAACCAAGTC
* ** *
16151907 CCGAAGGCATTCGTGCGGGTTATTATAATCGGGCTAAGTC
1 CCGAAGGCATTCGTGCGGGTTATTACAATCGAACCAAGTC
* * * *
16151947 CCGAAGGCATTCGTGCTGGTTGTTACATTCGAACCAAGTT
1 CCGAAGGCATTCGTGCGGGTTATTACAATCGAACCAAGTC
16151987 CCGAA
1 CCGAA
16151992 AGTAGTCATG
Statistics
Matches: 144, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
39 4 0.03
40 137 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGGGTTATTACAATCGAACCAAGTC
Found at i:16156016 original size:14 final size:14
Alignment explanation
Indices: 16155997--16156037 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
16155987 TTGCAGCTTG
16155997 TACAACTTGCACAT
1 TACAACTTGCACAT
*
16156011 TACAACTTGCAAAT
1 TACAACTTGCACAT
*
16156025 CACAACTTGCACA
1 TACAACTTGCACA
16156038 ATTAGGTAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.39, C:0.29, G:0.07, T:0.24
Consensus pattern (14 bp):
TACAACTTGCACAT
Found at i:16158052 original size:15 final size:15
Alignment explanation
Indices: 16158032--16158072 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
16158022 ACTATATATT
16158032 AATAATAAATAATAA
1 AATAATAAATAATAA
*
16158047 AATAATATATAATAA
1 AATAATAAATAATAA
16158062 AATAA-AAATAA
1 AATAATAAATAA
16158073 AGTAAGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAATAAATAATAA
Found at i:16158118 original size:14 final size:14
Alignment explanation
Indices: 16158083--16158158 Score: 64
Period size: 14 Copynumber: 5.1 Consensus size: 14
16158073 AGTAAGGGTT
*
16158083 AATACATATAATAA
1 AATATATATAATAA
*
16158097 AAGATATATAATAA
1 AATATATATAATAA
* *
16158111 AATTTATA-AATAG
1 AATATATATAATAA
16158124 AATATATAATAATATA
1 AATATAT-ATAATA-A
16158140 AATAATATGATAATTAA
1 AAT-ATAT-ATAA-TAA
16158157 AA
1 AA
16158159 ATAATATTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
13 10 0.20
14 19 0.39
15 4 0.08
16 3 0.06
17 11 0.22
18 2 0.04
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (14 bp):
AATATATATAATAA
Found at i:16159047 original size:25 final size:25
Alignment explanation
Indices: 16159019--16159077 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
16159009 GCCAAGTTTA
16159019 CTTCTTTTGCTGCTGTGGTTCTTTC
1 CTTCTTTTGCTGCTGTGGTTCTTTC
16159044 CTTCTTTTGCTGCTGTGGTTCTTTC
1 CTTCTTTTGCTGCTGTGGTTCTTTC
*
16159069 TTTCTTTTG
1 CTTCTTTTG
16159078 TAGATATCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.00, C:0.22, G:0.19, T:0.59
Consensus pattern (25 bp):
CTTCTTTTGCTGCTGTGGTTCTTTC
Found at i:16159755 original size:44 final size:44
Alignment explanation
Indices: 16159652--16160416 Score: 218
Period size: 44 Copynumber: 17.3 Consensus size: 44
16159642 ACAGAGAGAA
* * * * *
16159652 CAAATCAGCTATCTTCAATCTACTCTCTATCAATACAGAAATGC
1 CAAATCTGCTATCTTCGATATACTCTCCATCAATACAGAAACGC
* * * * *
16159696 TAGATGTGCTCTCTTCGATATACTCTCCATCAATATAGAAACGC
1 CAAATCTGCTATCTTCGATATACTCTCCATCAATACAGAAACGC
* * * * * * * *
16159740 CAAATCTGTTATCTTCGATCTGCT-TCGATGTGAACACACG-AATGT
1 CAAATCTGCTATCTTCGATATACTCTCCA--TCAATACA-GAAACGC
* ** * * * * * * *
16159785 CAGATCCACTATCTTCAATTTGCT-TCGATGTGAACATAC-G-AATGT
1 CAAATCTGCTATCTTCGATATACTCTCCA--T-CA-ATACAGAAACGC
* * * * **
16159830 CAAATATGCTATCTTCGATCTGCTCCCCATCTAATACA-AAGATAC
1 CAAATCTGCTATCTTCGATATACTCTCCATC-AATACAGAA-ACGC
* * * * * * *
16159875 CAAATCT-ATCATCTTCAATCTGCTCCCCATCAATATAGAGACGC
1 CAAATCTGCT-ATCTTCGATATACTCTCCATCAATACAGAAACGC
* * ** * *
16159919 CAAATCAGCTATCTTCGATATGCTCTCTGTCAATACAGAGATGC
1 CAAATCTGCTATCTTCGATATACTCTCCATCAATACAGAAACGC
* * * * * * * * *
16159963 CAAATGTGCTTTCTCCAATCTGCTCCCCATTAATACAGAGACGC
1 CAAATCTGCTATCTTCGATATACTCTCCATCAATACAGAAACGC
** * * * * * *
16160007 CAAATCAACTATCTCCGATCTGCTC-CC-TGACAATATAGAGATGC
1 CAAATCTGCTATCTTCGATATACTCTCCAT--CAATACAGAAACGC
* * * * * *
16160051 CAAATTTGCTATCGTCGATCTGCTCTCTGA-CAATACAGAGACGC
1 CAAATCTGCTATCTTCGATATACTCTC-CATCAATACAGAAACGC
* * * * * * *
16160095 CAAATTTGTTATTTTCGATCTGCTCTCTGA-CAATACAGAGACGC
1 CAAATCTGCTATCTTCGATATACTCTC-CATCAATACAGAAACGC
* * *
16160139 CAAATCTGCTATC-TCTGATCTACTCTCTGA-CAATACAGAGACGC
1 CAAATCTGCTATCTTC-GATATACTCTC-CATCAATACAGAAACGC
* * * * *
16160183 CAAATCTGTTAT-TATCGATCTGCTCTCTGA-CAATACAGAGACGC
1 CAAATCTGCTATCT-TCGATATACTCTC-CATCAATACAGAAACGC
* * * * * *
16160227 CAAATCTGTTATCTTCGATCTGCTCTCTGA-CAATACAGAGATGC
1 CAAATCTGCTATCTTCGATATACTCTC-CATCAATACAGAAACGC
* * * * * **
16160271 CAAATCTGCTATCGTCGATCTGCTCTCTGA-CAATACAGAGATTC
1 CAAATCTGCTATCTTCGATATACTCTC-CATCAATACAGAAACGC
* * * *
16160315 CAAATCTGTTATCTTCGATCTACTCTCTGA-CAATACAGAGACGC
1 CAAATCTGCTATCTTCGATATACTCTC-CATCAATACAGAAACGC
* * * * * *
16160359 CAAATCTGCTATCGTCGATCTGCTCTCCGA-CAACATAGAGACGC
1 CAAATCTGCTATCTTCGATATACTCTCC-ATCAATACAGAAACGC
*
16160403 CAAATCTGTTATCT
1 CAAATCTGCTATCT
16160417 GTGATCTATA
Statistics
Matches: 587, Mismatches: 111, Indels: 46
0.79 0.15 0.06
Matches are distributed among these distances:
42 1 0.00
43 11 0.02
44 477 0.81
45 91 0.16
46 4 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
CAAATCTGCTATCTTCGATATACTCTCCATCAATACAGAAACGC
Found at i:16159842 original size:45 final size:45
Alignment explanation
Indices: 16159740--16159853 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 45
16159730 ATAGAAACGC
* *
16159740 CAAATCTGTTATCTTCGATCTGCTTCGATGTGAACACACGAATGT
1 CAAATCTGCTATCTTCAATCTGCTTCGATGTGAACACACGAATGT
* ** * *
16159785 CAGATCCACTATCTTCAATTTGCTTCGATGTGAACATACGAATGT
1 CAAATCTGCTATCTTCAATCTGCTTCGATGTGAACACACGAATGT
* *
16159830 CAAATATGCTATCTTCGATCTGCT
1 CAAATCTGCTATCTTCAATCTGCT
16159854 CCCCATCTAA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (45 bp):
CAAATCTGCTATCTTCAATCTGCTTCGATGTGAACACACGAATGT
Found at i:16160410 original size:132 final size:131
Alignment explanation
Indices: 16159830--16160416 Score: 653
Period size: 132 Copynumber: 4.4 Consensus size: 131
16159820 ATACGAATGT
* * * ** * *
16159830 CAAATATGCTATCTTCGATCTGCTC-CCCATCTAATACAAAGATACCAAATCT-ATCATCTTCAA
1 CAAATCTGCTATCTTCGATCTGCTCTCCGA-C-AATACAGAGACGCCAAATCTGCT-ATC-TCGA
** * * * * *
16159893 TCTGCTC-CCCATCAATATAGAGACGCCAAATCAGCTATCTTCGATATGCTCTCTGTCAATACAG
62 TCTGCTCTCTGA-CAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAG
*
16159957 AGATGC
126 AGACGC
* * * * * * **
16159963 CAAATGTGCTTTCTCCAATCTGCTC-CCCATTAATACAGAGACGCCAAATCAACTATCTCCGATC
1 CAAATCTGCTATCTTCGATCTGCTCTCCGA-CAATACAGAGACGCCAAATCTGCTATCT-CGATC
* * * *
16160027 TGCTCCCTGACAATATAGAGATGCCAAATTTGCTATCGTCGATCTGCTCTCTGACAATACAGAGA
64 TGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGA
16160092 CGC
129 CGC
* * * *
16160095 CAAATTTGTTATTTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTCTGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGACGCCAAATCTGCTATCTC-GATCT
* * *
16160160 ACTCTCTGACAATACAGAGACGCCAAATCTGTTAT-TATCGATCTGCTCTCTGACAATACAGAGA
65 GCTCTCTGACAATACAGAGATGCCAAATCTGCTATCT-TCGATCTGCTCTCTGACAATACAGAGA
16160224 CGC
129 CGC
* * *
16160227 CAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCGTCGATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGACGCCAAATCTGCTATC-TCGATCT
* * *
16160292 GCTCTCTGACAATACAGAGATTCCAAATCTGTTATCTTCGATCTACTCTCTGACAATACAGAGAC
65 GCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
16160357 GC
130 GC
* * * *
16160359 CAAATCTGCTATCGTCGATCTGCTCTCCGACAACATAGAGACGCCAAATCTGTTATCT
1 CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGACGCCAAATCTGCTATCT
16160417 GTGATCTATA
Statistics
Matches: 394, Mismatches: 52, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
131 3 0.01
132 357 0.91
133 34 0.09
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (131 bp):
CAAATCTGCTATCTTCGATCTGCTCTCCGACAATACAGAGACGCCAAATCTGCTATCTCGATCTG
CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGACG
C
Found at i:16160423 original size:44 final size:45
Alignment explanation
Indices: 16159905--16160423 Score: 614
Period size: 44 Copynumber: 11.8 Consensus size: 45
16159895 TGCTCCCCAT
* * * *
16159905 CAATATAGAGACGCCAAATCAGCTATCT-TCGATATGCTCTCTGT
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* * * * * **
16159949 CAATACAGAGATGCCAAATGTGCTTTCT-CCAATCTGCTC-CCCA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* ** * *
16159992 TTAATACAGAGACGCCAAATCAACTATCT-CCGATCTGCTCCCTGA
1 -CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* * *
16160037 CAATATAGAGATGCCAAATTTGCTATC-GTCGATCTGCTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* * *
16160081 CAATACAGAGACGCCAAATTTGTTAT-TTTCGATCTGCTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* *
16160125 CAATACAGAGACGCCAAATCTGCTATCTCT-GATCTACTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* *
16160169 CAATACAGAGACGCCAAATCTGTTAT-TATCGATCTGCTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
*
16160213 CAATACAGAGACGCCAAATCTGTTATCT-TCGATCTGCTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
*
16160257 CAATACAGAGATGCCAAATCTGCTATC-GTCGATCTGCTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
** * *
16160301 CAATACAGAGATTCCAAATCTGTTATCT-TCGATCTACTCTCTGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
*
16160345 CAATACAGAGACGCCAAATCTGCTATC-GTCGATCTGCTCTCCGA
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
* * *
16160389 CAACATAGAGACGCCAAATCTGTTATCTGT-GATCT
1 CAATACAGAGACGCCAAATCTGCTATCTGTCGATCT
16160424 ATATTGTCCT
Statistics
Matches: 412, Mismatches: 52, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
43 3 0.01
44 402 0.98
45 7 0.02
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (45 bp):
CAATACAGAGACGCCAAATCTGCTATCTGTCGATCTGCTCTCTGA
Found at i:16172590 original size:71 final size:66
Alignment explanation
Indices: 16172462--16172617 Score: 177
Period size: 71 Copynumber: 2.3 Consensus size: 66
16172452 ATGCATTATC
* * * * *
16172462 ATTTCATGCAGACATAATCACAGAAAACAATGAACATAACAATATAGATTTCACAATACATACAT
1 ATTTCATGCAAATATAA-CATAGAAAACAATGAACATAACAATATAAATTACACAAT--AT--AT
*
16172527 AATAAT
61 AACAAT
* *
16172533 ATTTCATGCAAAATATAACATAGAAAACAATGAATATAACAATATAAATTACCCAATATATAACA
1 ATTTCATGC-AAATATAACATAGAAAACAATGAACATAACAATATAAATTACACAATATATAACA
16172598 AT
65 AT
*
16172600 ATTTTATGCAAATATAAC
1 ATTTCATGCAAATATAAC
16172618 TTAAATTAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
66 9 0.12
67 15 0.20
69 2 0.03
71 43 0.57
72 6 0.08
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.28
Consensus pattern (66 bp):
ATTTCATGCAAATATAACATAGAAAACAATGAACATAACAATATAAATTACACAATATATAACAA
T
Found at i:16173051 original size:15 final size:15
Alignment explanation
Indices: 16173030--16173070 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
16173020 ACTGTATATT
16173030 AATAATAAATAATAA
1 AATAATAAATAATAA
* *
16173045 CATAATATATAATAA
1 AATAATAAATAATAA
16173060 AATAA-AAATAA
1 AATAATAAATAA
16173071 AGTAAGGGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (15 bp):
AATAATAAATAATAA
Found at i:16173116 original size:14 final size:14
Alignment explanation
Indices: 16173081--16173151 Score: 65
Period size: 14 Copynumber: 5.1 Consensus size: 14
16173071 AGTAAGGGTT
*
16173081 AATACATATAATAA
1 AATATATATAATAA
*
16173095 AAGATATATAATAA
1 AATATATATAATAA
* *
16173109 AATTTATA-AATAG
1 AATATATATAATAA
16173122 AATATATAATAATATA
1 AATATAT-ATAATA-A
*
16173138 AATA-ATATGATAA
1 AATATATATAATAA
16173151 A
1 A
16173152 TAAAAATAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
13 12 0.26
14 24 0.52
15 6 0.13
16 4 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (14 bp):
AATATATATAATAA
Found at i:16179464 original size:16 final size:15
Alignment explanation
Indices: 16179431--16179460 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16179421 AACAAGTTTT
*
16179431 TTTTTCTTTTTAATA
1 TTTTTATTTTTAATA
16179446 TTTTTATTTTTAATA
1 TTTTTATTTTTAATA
16179461 ATTTATTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTATTTTTAATA
Found at i:16183197 original size:18 final size:18
Alignment explanation
Indices: 16183174--16183208 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
16183164 TTACCAAAAA
16183174 AAAAATTA-AAATATTTAC
1 AAAAATTACAAA-ATTTAC
16183192 AAAAATTACAAAATTTA
1 AAAAATTACAAAATTTA
16183209 TATTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAAATTACAAAATTTAC
Found at i:16183211 original size:24 final size:24
Alignment explanation
Indices: 16183184--16183230 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
16183174 AAAAATTAAA
* *
16183184 ATATTTACAAAAATTACAAAATTT
1 ATATTTAAAAAAAGTACAAAATTT
*
16183208 ATATTTAAAAAAAGTATAAAATT
1 ATATTTAAAAAAAGTACAAAATT
16183231 AAAAAAAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (24 bp):
ATATTTAAAAAAAGTACAAAATTT
Found at i:16183246 original size:18 final size:17
Alignment explanation
Indices: 16183212--16183245 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16183202 AAATTTATAT
*
16183212 TTAAAAAAAGTATAAAA
1 TTAAAAAAAATATAAAA
*
16183229 TTAAAAAAAATCTAAAA
1 TTAAAAAAAATATAAAA
16183246 AATATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (17 bp):
TTAAAAAAAATATAAAA
Found at i:16183251 original size:39 final size:41
Alignment explanation
Indices: 16183171--16183290 Score: 113
Period size: 40 Copynumber: 2.9 Consensus size: 41
16183161 AAATTACCAA
* * * *
16183171 AAAAAAAATTAAAATATTTACAAAAATTAC-AAAATTTATATTT
1 AAAAAAAGTTAAAA-ATTTAAAAAAAAT-CTAAAA-TAATATTT
16183214 AAAAAAAG-TATAAAA-TTAAAAAAAATCTAAAA-AATATTT
1 AAAAAAAGTTA-AAAATTTAAAAAAAATCTAAAATAATATTT
* * *
16183253 AAAGAAAGTTAAAAATTTAAAAATATTCTAAAATAATA
1 AAAAAAAGTTAAAAATTTAAAAAAAATCTAAAATAATA
16183291 ATTTTGGGAC
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
39 17 0.26
40 18 0.28
41 17 0.26
42 3 0.05
43 10 0.15
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (41 bp):
AAAAAAAGTTAAAAATTTAAAAAAAATCTAAAATAATATTT
Found at i:16196730 original size:20 final size:22
Alignment explanation
Indices: 16196677--16196770 Score: 125
Period size: 22 Copynumber: 4.3 Consensus size: 22
16196667 GCACATGCTT
* * *
16196677 GTGTAAAGAGAAGCACACACCC
1 GTGTGAAGAGAGGCACACGCCC
*
16196699 ATGTGAAGAGAGGCACACGCCC
1 GTGTGAAGAGAGGCACACGCCC
16196721 GTGTGAAGAGAGGCACACGCCC
1 GTGTGAAGAGAGGCACACGCCC
* * *
16196743 GTGTGAAGAGAAGCACATGGCC
1 GTGTGAAGAGAGGCACACGCCC
16196765 GTGTGA
1 GTGTGA
16196771 CTAAGGTACA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 64 1.00
ACGTcount: A:0.32, C:0.23, G:0.33, T:0.12
Consensus pattern (22 bp):
GTGTGAAGAGAGGCACACGCCC
Found at i:16196787 original size:21 final size:21
Alignment explanation
Indices: 16196757--16196803 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
16196747 GAAGAGAAGC
* *
16196757 ACATGGCCGTGT-GACTAAGG
1 ACATGCCCGTGTGGACCAAGG
16196777 TACATGCCCGTGTGGACCAAGG
1 -ACATGCCCGTGTGGACCAAGG
16196799 ACATG
1 ACATG
16196804 GCCATGGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.26, C:0.23, G:0.32, T:0.19
Consensus pattern (21 bp):
ACATGCCCGTGTGGACCAAGG
Found at i:16198127 original size:16 final size:16
Alignment explanation
Indices: 16198096--16198125 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16198086 TTGATATCTC
16198096 TTTTTTTAAATATTTA
1 TTTTTTTAAATATTTA
16198112 TTTTTTT-AATATTT
1 TTTTTTTAAATATTT
16198126 TACTATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTTTAAATATTTA
Found at i:16213788 original size:28 final size:28
Alignment explanation
Indices: 16213731--16213788 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
16213721 GAAGTTAGTT
* * *
16213731 AAATGAGTGTTTGGATCCTCGTCTTGCA
1 AAATGAGTGTTTGGATCCTCATCCTACA
*
16213759 AAATGAGTGTTTGGATCCTTATCCTACA
1 AAATGAGTGTTTGGATCCTCATCCTACA
16213787 AA
1 AA
16213789 TCATCAAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (28 bp):
AAATGAGTGTTTGGATCCTCATCCTACA
Found at i:16218153 original size:18 final size:17
Alignment explanation
Indices: 16218112--16218145 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16218102 GTGTTATATA
*
16218112 AAACACTTGTAACATTG
1 AAACAATTGTAACATTG
16218129 AATACAATTGTAACATT
1 AA-ACAATTGTAACATT
16218146 TGTAACAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.13
18 13 0.87
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (17 bp):
AAACAATTGTAACATTG
Found at i:16220886 original size:19 final size:21
Alignment explanation
Indices: 16220848--16220893 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
16220838 GCACCAATGT
*
16220848 ATATAATAACACTTTAACAAA
1 ATATAATAACACTGTAACAAA
16220869 ATATAAT-ACA-TGTAACAAA
1 ATATAATAACACTGTAACAAA
16220888 AT-TAAT
1 ATATAAT
16220894 CCGTAGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 10 0.42
20 3 0.12
21 7 0.29
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (21 bp):
ATATAATAACACTGTAACAAA
Found at i:16234065 original size:56 final size:56
Alignment explanation
Indices: 16233977--16234169 Score: 280
Period size: 56 Copynumber: 3.4 Consensus size: 56
16233967 GACCATGGCA
* * *
16233977 TCGATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGATATATGATT
1 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* *
16234033 TTGATATATGTGTGCAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* ** *
16234089 TCGATATATGTATGTGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATT
1 TCGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
*
16234145 CCG-TCATATGTGTGCAAGTAAGACC
1 TCGAT-ATATGTGTGCAAGTAAGACC
16234170 TTGTCTGGGA
Statistics
Matches: 121, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
55 1 0.01
56 120 0.99
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:16234187 original size:112 final size:112
Alignment explanation
Indices: 16233977--16234200 Score: 283
Period size: 112 Copynumber: 2.0 Consensus size: 112
16233967 GACCATGGCA
* * **
16233977 TCGATATATGTGTGCGAGTAAGATCACGTTTAATACGTTGGCATCGATATATGATTTTGATATAT
1 TCGATATATGTATGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATAT
* * *
16234042 GTGTGCAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
66 GTGTGCAAGTAAGACCACGTTGAACATGTTGGCATCAATATGTGATT
* * *
16234089 TCGATATATGTATGTGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCCG-TCATA
1 TCGATATATGTATGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGAT-ATA
** *
16234153 TGTGTGCAAGTAAGACCTTGTCTGGGACA-G-TGGCATCAATATGTGATT
65 TGTGTGCAAGTAAGACCACGT-T-GAACATGTTGGCATCAATATGTGATT
16234201 ACATGTAAGA
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
111 1 0.01
112 91 0.95
113 2 0.02
114 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (112 bp):
TCGATATATGTATGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATATGATTCCGATATAT
GTGTGCAAGTAAGACCACGTTGAACATGTTGGCATCAATATGTGATT
Found at i:16241074 original size:56 final size:56
Alignment explanation
Indices: 16241013--16241203 Score: 303
Period size: 56 Copynumber: 3.4 Consensus size: 56
16241003 CCATGACACC
16241013 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
* *
16241069 GATATATGTGTACGAGTAAGACTACGTTTAATATGTT-GCGATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGC-ATCGATATGTGATTCT
** *
16241125 GATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTCC
1 GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
* *
16241181 GTTATATGTGTGCAAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
16241204 TTGTCTGGGA
Statistics
Matches: 124, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
55 2 0.02
56 120 0.97
57 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTCT
Found at i:16241221 original size:56 final size:56
Alignment explanation
Indices: 16241011--16241234 Score: 218
Period size: 56 Copynumber: 4.0 Consensus size: 56
16241001 GGCCATGACA
* * * *
16241011 CCGATATATGTGTGCGAGTAAGACCACGTTTAATA-TGTTGGCATCGATATGTGATT
1 CCGATATATGTGTGCAAGTAAGACCACGTCTAAGACAG-TGGCATCGATATGTGATT
* * * * * * * *
16241067 CTGATATATGTGTACGAGTAAGACTACGTTTAATA-TGTTGCGATCGATATGTGATT
1 CCGATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTGGC-ATCGATATGTGATT
* * * * *
16241123 CTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
1 CCGATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTGGCATCGATATGTGATT
* ** **
16241179 CCGTTATATGTGTGCAAGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTGATT
1 CCGATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTGGCATCGATATGTGATT
16241235 ACATGTAAGA
Statistics
Matches: 147, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
55 3 0.02
56 141 0.96
57 3 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (56 bp):
CCGATATATGTGTGCAAGTAAGACCACGTCTAAGACAGTGGCATCGATATGTGATT
Found at i:16241253 original size:43 final size:41
Alignment explanation
Indices: 16241196--16241303 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 41
16241186 ATGTGTGCAA
**
16241196 GTAAGACCTTGTCTGGGACAG-TGGCATCGATATGTGATTACAT
1 GTAAGACCACGTCTGGGAC-GTTGGCATC-AT-TGTGATTACAT
*
16241239 GTAAGACCACGTCTGAGACGTTGG---CATTGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCATTGTGATTACAT
*
16241277 GTAAGACCACGTCTAGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
16241304 TGTACGATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
38 33 0.59
39 2 0.04
40 1 0.02
42 1 0.02
43 19 0.34
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (41 bp):
GTAAGACCACGTCTGGGACGTTGGCATCATTGTGATTACAT
Found at i:16241279 original size:38 final size:38
Alignment explanation
Indices: 16241228--16241306 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
16241218 GGCATCGATA
16241228 TGTGATTACATGTAAGACCACGTCT-GAGACGTTGGCAT
1 TGTGATTACATGTAAGACCACGTCTAG-GACGTTGGCAT
16241266 TGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
16241304 TGT
1 TGT
16241307 ACGATATGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 39 0.98
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (38 bp):
TGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
Found at i:16250748 original size:27 final size:26
Alignment explanation
Indices: 16250695--16250748 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16250685 GATATATACA
* *
16250695 ATATAAAAATATATAAAAGAATTAGT
1 ATATAAAAATATATAAAAAAATGAGT
16250721 ATATAAAAA-ATATAAAATAAAGTGAGT
1 ATATAAAAATATATAAAA-AAA-TGAGT
16250748 A
1 A
16250749 ATTGTTAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 8 0.33
26 11 0.46
27 5 0.21
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (26 bp):
ATATAAAAATATATAAAAAAATGAGT
Found at i:16250955 original size:20 final size:21
Alignment explanation
Indices: 16250917--16250990 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
16250907 ATATAAAATA
* *
16250917 AAAAGTATGTAAAAGAATTTAT
1 AAAA-TATATAAAATAATTTAT
16250939 AAAATA-ATAAAATAATTATAT
1 AAAATATATAAAATAATT-TAT
* *
16250960 AATATATATAAATATAAGTTTAG
1 AAAATATATAAA-ATAA-TTTAT
16250983 AATAATAT
1 AA-AATAT
16250991 GAAATAAGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 9 0.21
21 10 0.24
22 9 0.21
23 8 0.19
24 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
AAAATATATAAAATAATTTAT
Found at i:16250967 original size:28 final size:28
Alignment explanation
Indices: 16250899--16250973 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
16250889 GTTTTTTTTA
*
16250899 AAAATAATATATAAAATAAAAAGTATGT
1 AAAATAATATATAAAATAAAAAATATGT
* *
16250927 AAAAGAATTTATAAAATAATAAAATAAT-T
1 AAAATAATATATAAAATAA-AAAAT-ATGT
*
16250956 -ATATAATATATATAAATA
1 AAAATAATATATA-AAATA
16250974 TAAGTTTAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 26 0.68
29 10 0.26
30 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAATAATATATAAAATAAAAAATATGT
Found at i:16250972 original size:21 final size:19
Alignment explanation
Indices: 16250935--16250973 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
16250925 GTAAAAGAAT
16250935 TTATAAAATAATAAAATAA
1 TTATAAAATAATAAAATAA
*
16250954 TTATATAATATATATAAATA
1 TTATAAAATA-ATA-AAATA
16250974 TAAGTTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTATAAAATAATAAAATAA
Found at i:16251276 original size:3 final size:3
Alignment explanation
Indices: 16251268--16251389 Score: 56
Period size: 3 Copynumber: 39.3 Consensus size: 3
16251258 AAGTAAAAAC
* * *
16251268 ATA ATA ATA ATA TATA AGTA ATA AT- GTA A-A ATA ATA ATA ATTT GTGA
1 ATA ATA ATA ATA -ATA A-TA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A
* * *
16251315 AAA ACA ATA TACA ATA GATA ATA ATA AT- ATAA ATA ATA TATA ATA A-A
1 ATA ATA ATA -ATA ATA -ATA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA
* *
16251362 ATA ATT ATA ATA TATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA A
16251390 GGTTAAAAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
2 9 0.10
3 61 0.68
4 20 0.22
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16251302 original size:30 final size:29
Alignment explanation
Indices: 16251223--16251385 Score: 104
Period size: 30 Copynumber: 5.5 Consensus size: 29
16251213 AAAAAAATAC
*
16251223 ATAAT-ATATATAAATAATTCATAAATATATA
1 ATAATAATATA-AAATAA-TAAT-AATATATA
* *
16251254 ATACA-AGTAAAAACATAATAATAATATATA
1 ATA-ATAATATAAA-ATAATAATAATATATA
* * *
16251284 AGTAATAATGTAAAATAATAATAATTTGTGA
1 A-TAATAATATAAAATAATAATAATATAT-A
* * *
16251315 AAAACAATATACAATAGATAATAATA-AT-
1 ATAATAATATAAAATA-ATAATAATATATA
*
16251343 ATAAATAATATATAATAA-AATAAT-TATA
1 AT-AATAATATAAAATAATAATAATATATA
16251371 ATATATAATATAAAA
1 ATA-ATAATATAAAA
16251386 ATAAGGTTAA
Statistics
Matches: 103, Mismatches: 18, Indels: 25
0.71 0.12 0.17
Matches are distributed among these distances:
27 9 0.09
28 14 0.14
29 12 0.12
30 35 0.34
31 25 0.24
32 8 0.08
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (29 bp):
ATAATAATATAAAATAATAATAATATATA
Found at i:16251359 original size:7 final size:7
Alignment explanation
Indices: 16251320--16251382 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
16251310 TGTGAAAAAC
*
16251320 AATATAC
1 AATATAT
*
16251327 AATAGAT
1 AATATAT
16251334 AATA-AT
1 AATATAT
16251340 AATATAAAT
1 AATAT--AT
16251349 AATATAT
1 AATATAT
*
16251356 AATAAAAT
1 AAT-ATAT
16251364 AAT-TAT
1 AATATAT
16251370 AATATAT
1 AATATAT
16251377 AATATA
1 AATATA
16251383 AAAATAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 11 0.23
7 23 0.49
8 6 0.13
9 7 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (7 bp):
AATATAT
Found at i:16251371 original size:21 final size:19
Alignment explanation
Indices: 16251335--16251468 Score: 70
Period size: 18 Copynumber: 7.2 Consensus size: 19
16251325 ACAATAGATA
*
16251335 ATAATAATATAAATAATAT
1 ATAATAAAATAAATAATAT
16251354 ATAATAAAATAATTATAATAT
1 ATAATAAAATAA--ATAATAT
* **
16251375 ATAATATAA-AAATAAGGT
1 ATAATAAAATAAATAATAT
*
16251393 -TAAAAAAATAAA-ACA-A-
1 ATAATAAAATAAATA-ATAT
* * *
16251409 ATAACAATATCAAA-AATTT
1 ATAATAAAAT-AAATAATAT
*
16251428 ATATATATAAT-AATAATA-
1 ATA-ATAAAATAAATAATAT
16251446 ATAATAGAAATAAAT-ATAT
1 ATAATA-AAATAAATAATAT
16251465 ATAA
1 ATAA
16251469 GGTTAGATTT
Statistics
Matches: 87, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
17 18 0.21
18 24 0.28
19 24 0.28
20 6 0.07
21 15 0.17
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (19 bp):
ATAATAAAATAAATAATAT
Found at i:16253425 original size:205 final size:206
Alignment explanation
Indices: 16253014--16253568 Score: 882
Period size: 206 Copynumber: 2.7 Consensus size: 206
16253004 AAATCTGCTT
* *
16253014 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGA-TTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * *
16253078 GTGAAAACCAAATCAGCTATGTCTTTGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
16253143 GGATCTGCTTCAGTCTAATCATTTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCGAATCATCTGAAGGTGAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
16253208 GAGATACCAGA
196 GAGATACCAGA
*
16253219 CTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
*
16253284 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
16253349 GGATCTGCTTCGGT-GAGATCATCTGAAGGTGAGATCTGCTATGTATCTGCTCTCTGTCGAA-AT
131 GGATCTGCTTCAGTCGA-ATCATCTGAAGGTGAGATCTGCTATGTATCTGCCCTCCGTCGAATAT
*
16253412 GGAGATGCCAGA
195 GGAGATACCAGA
**
16253424 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAATAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
16253489 GTGAAAGCCAAATCAGCTATGTCTTCGATTTTTTTTCTTGTAAGTACAAAGATGCCAAACCATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGA-TTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
16253554 TGGATCTGCTTCAGT
130 TGGATCTGCTTCAGT
16253569 ACAAGCATTT
Statistics
Matches: 323, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 149 0.46
206 174 0.54
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTCGAATCATCTGAAGGTGAGATCTGCTATGTATCTGCCCTCCGTCGAATATG
GAGATACCAGA
Found at i:16259951 original size:40 final size:40
Alignment explanation
Indices: 16259853--16260115 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
16259843 TCCTCGTTCA
* * * * *
16259853 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
16259892 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16259932 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16259972 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
16260012 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
16260052 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
16260092 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16260116 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:16260124 original size:41 final size:41
Alignment explanation
Indices: 16260047--16260124 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
16260037 TTAGTATCTC
* * *
16260047 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
16260088 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
16260125 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:16275601 original size:20 final size:21
Alignment explanation
Indices: 16275563--16275636 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 21
16275553 ATATAAAATA
* *
16275563 AAAAGTATGTAAAAGAATTTAT
1 AAAA-TATATAAAATAATTTAT
16275585 AAAATA-ATAAAATAATTATAT
1 AAAATATATAAAATAATT-TAT
* *
16275606 AATATATATAAATATAAGTTTAG
1 AAAATATATAAA-ATAA-TTTAT
16275629 AATAATAT
1 AA-AATAT
16275637 GAAATAAGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
20 9 0.21
21 10 0.24
22 9 0.21
23 8 0.19
24 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
AAAATATATAAAATAATTTAT
Found at i:16275613 original size:28 final size:28
Alignment explanation
Indices: 16275545--16275619 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
16275535 GGTTTTTAAA
*
16275545 AAAATAATATATAAAATAAAAAGTATGT
1 AAAATAATATATAAAATAAAAAATATGT
* *
16275573 AAAAGAATTTATAAAATAATAAAATAAT-T
1 AAAATAATATATAAAATAA-AAAAT-ATGT
*
16275602 -ATATAATATATATAAATA
1 AAAATAATATATA-AAATA
16275620 TAAGTTTAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 26 0.68
29 10 0.26
30 2 0.05
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (28 bp):
AAAATAATATATAAAATAAAAAATATGT
Found at i:16275618 original size:21 final size:19
Alignment explanation
Indices: 16275581--16275619 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
16275571 GTAAAAGAAT
16275581 TTATAAAATAATAAAATAA
1 TTATAAAATAATAAAATAA
*
16275600 TTATATAATATATATAAATA
1 TTATAAAATA-ATA-AAATA
16275620 TAAGTTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TTATAAAATAATAAAATAA
Found at i:16275938 original size:3 final size:3
Alignment explanation
Indices: 16275930--16276051 Score: 56
Period size: 3 Copynumber: 39.3 Consensus size: 3
16275920 AAGTAAAAAC
* * *
16275930 ATA ATA ATA ATA TATA AGTA ATA AT- GTA A-A ATA ATA ATA ATTT GTGA
1 ATA ATA ATA ATA -ATA A-TA ATA ATA ATA ATA ATA ATA ATA A-TA AT-A
* * *
16275977 AAA ACA ATA TACA ATA GATA ATA ATA AT- ATAA ATA ATA TATA ATA A-A
1 ATA ATA ATA -ATA ATA -ATA ATA ATA ATA AT-A ATA ATA -ATA ATA ATA
* *
16276024 ATA ATT ATA ATA TATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA A
16276052 GGTTAAAAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
2 9 0.10
3 61 0.68
4 20 0.22
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16275964 original size:30 final size:29
Alignment explanation
Indices: 16275824--16276047 Score: 117
Period size: 30 Copynumber: 7.5 Consensus size: 29
16275814 AAGAAATGAC
* *
16275824 ATAATAATATAAAATAATTACAATATA-A
1 ATAATAATATAAAATAATAATAATATATA
*
16275852 TATGAAAGTATATATGCAAAA-AA-AATAATACATA
1 -AT--AA-TA-ATAT--AAAATAATAATAATATATA
16275886 AT-AT-ATATATAAATAATTAATAAATATATA
1 ATAATAATATA-AAATAA-TAAT-AATATATA
* *
16275916 ATACA-AGTAAAAACATAATAATAATATATA
1 ATA-ATAATATAAA-ATAATAATAATATATA
* * *
16275946 AGTAATAATGTAAAATAATAATAATTTGTGA
1 A-TAATAATATAAAATAATAATAATATAT-A
* * *
16275977 AAAACAATATACAATAGATAATAATA-AT-
1 ATAATAATATAAAATA-ATAATAATATATA
*
16276005 ATAAATAATATATAATAA-AATAAT-TATA
1 AT-AATAATATAAAATAATAATAATATATA
16276033 ATATATAATATAAAA
1 ATA-ATAATATAAAA
16276048 ATAAGGTTAA
Statistics
Matches: 150, Mismatches: 21, Indels: 49
0.68 0.10 0.22
Matches are distributed among these distances:
25 1 0.01
26 3 0.02
27 15 0.10
28 14 0.09
29 18 0.12
30 45 0.30
31 25 0.17
32 10 0.07
33 12 0.08
34 3 0.02
35 4 0.03
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (29 bp):
ATAATAATATAAAATAATAATAATATATA
Found at i:16276021 original size:7 final size:7
Alignment explanation
Indices: 16275982--16276044 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
16275972 TGTGAAAAAC
*
16275982 AATATAC
1 AATATAT
*
16275989 AATAGAT
1 AATATAT
16275996 AATA-AT
1 AATATAT
16276002 AATATAAAT
1 AATAT--AT
16276011 AATATAT
1 AATATAT
*
16276018 AATAAAAT
1 AAT-ATAT
16276026 AAT-TAT
1 AATATAT
16276032 AATATAT
1 AATATAT
16276039 AATATA
1 AATATA
16276045 AAAATAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 11 0.23
7 23 0.49
8 6 0.13
9 7 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (7 bp):
AATATAT
Found at i:16276033 original size:21 final size:19
Alignment explanation
Indices: 16275997--16276051 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
16275987 ACAATAGATA
*
16275997 ATAATAATATAAATAATAT
1 ATAATAAAATAAATAATAT
16276016 ATAATAAAATAATTATAATAT
1 ATAATAAAATAA--ATAATAT
*
16276037 ATAATATAA-AAATAA
1 ATAATAAAATAAATAA
16276052 GGTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 4 0.12
19 11 0.34
20 2 0.06
21 15 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATAATAAAATAAATAATAT
Found at i:16277575 original size:27 final size:27
Alignment explanation
Indices: 16277545--16277596 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
16277535 CATATTAGTA
16277545 CTCCGCTAACAACACATTTCAAACTCT
1 CTCCGCTAACAACACATTTCAAACTCT
16277572 CTCCGCTAACAACACATTTCAAACT
1 CTCCGCTAACAACACATTTCAAACT
16277597 GTCTGTAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.37, G:0.04, T:0.25
Consensus pattern (27 bp):
CTCCGCTAACAACACATTTCAAACTCT
Found at i:16284207 original size:18 final size:18
Alignment explanation
Indices: 16284186--16284242 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
16284176 AGTAATAGTA
*
16284186 GCAGTAGCAGTAATCAAT
1 GCAGTAACAGTAATCAAT
*
16284204 GCAGTAACCA-TGATCAAT
1 GCAGTAA-CAGTAATCAAT
*
16284222 GCAGTAACAGTAATCAGT
1 GCAGTAACAGTAATCAAT
16284240 GCA
1 GCA
16284243 AAATGCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 2 0.06
18 29 0.88
19 2 0.06
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (18 bp):
GCAGTAACAGTAATCAAT
Found at i:16284526 original size:23 final size:22
Alignment explanation
Indices: 16284495--16284550 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
16284485 TATCCCACCC
16284495 CATGCGATGCAACATA-ATATCATA
1 CATG-GATGCAACATACATAT-A-A
*
16284519 CATGGATGCAATATACATATAA
1 CATGGATGCAACATACATATAA
16284541 CATGGCATGC
1 CATGG-ATGC
16284551 TCAAATATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.21
23 15 0.52
24 8 0.28
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (22 bp):
CATGGATGCAACATACATATAA
Found at i:16284652 original size:27 final size:26
Alignment explanation
Indices: 16284585--16284672 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
16284575 GAATAAATAT
* *
16284585 GTCATTTTACCTTACTGGGGTATTACA
1 GTCATTTTACCCTA-TGGGGTATTTCA
* * * *
16284612 ATTATTCTATCCTATGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCA
*
16284639 GTCATTTTACCCTATAAGGGTATTTC-
1 GTCATTTTACCCTAT-GGGGTATTTCA
16284665 GATCATTT
1 G-TCATTT
16284673 GATCACATAA
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 2 0.04
27 45 0.96
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCA
Found at i:16284682 original size:27 final size:24
Alignment explanation
Indices: 16284652--16284714 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 24
16284642 ATTTTACCCT
16284652 ATAAGGGTATTTCGATCATTTGATCAC
1 ATAAGGGTATTT---TCATTTGATCAC
*
16284679 ATAAGGGCAAAATTTTCATTTGATCAC
1 ATAAGGG---TATTTTCATTTGATCAC
16284706 ATAAGGGTA
1 ATAAGGGTA
16284715 AAATAGTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
24 1 0.03
27 26 0.84
30 4 0.13
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (24 bp):
ATAAGGGTATTTTCATTTGATCAC
Found at i:16284717 original size:27 final size:27
Alignment explanation
Indices: 16284667--16284718 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
16284657 GGTATTTCGA
16284667 TCATTTGATCACATAAGGGCAAAATTT
1 TCATTTGATCACATAAGGGCAAAATTT
*
16284694 TCATTTGATCACATAAGGGTAAAAT
1 TCATTTGATCACATAAGGGCAAAAT
16284719 AGTCATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (27 bp):
TCATTTGATCACATAAGGGCAAAATTT
Found at i:16284738 original size:27 final size:27
Alignment explanation
Indices: 16284667--16284731 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
16284657 GGTATTTCGA
**
16284667 TCATTTGATCACATAAGGGCAAAATTT
1 TCATTTGATCACATAAGGGCAAAATAG
*
16284694 TCATTTGATCACATAAGGGTAAAATAG
1 TCATTTGATCACATAAGGGCAAAATAG
*
16284721 TCATTTTATCA
1 TCATTTGATCA
16284732 AAAAAGGCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (27 bp):
TCATTTGATCACATAAGGGCAAAATAG
Found at i:16284774 original size:27 final size:27
Alignment explanation
Indices: 16284744--16285243 Score: 608
Period size: 27 Copynumber: 18.4 Consensus size: 27
16284734 AAAGGCAAAA
* * *
16284744 CACATAAGGGTAAAATCGTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* *
16284771 CACATGAGAGAAAAATCATCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16284798 CACATGAGGGCAAAATCTTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* **
16284825 CACATAAGGGCAAAATTTGTCATTTTAT
1 CACATGAGGGCAAAA-TCATCATTTTAT
** *
16284853 CATGTGAGGGCAAAATCGTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16284880 CACAT-AAGGCAAAATTCATCATTTTAT
1 CACATGAGGGCAAAA-TCATCATTTTAT
*
16284907 CACATAAGGGCAAAAATCATCATTTTAT
1 CACATGAGGGC-AAAATCATCATTTTAT
* * *
16284935 CACATGAGAGAAAAATCATTATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* * * *
16284962 CATATAAGGGTAAAATCGTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* *
16284989 CACATGAGGGTAAAATCATTATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* * *
16285016 CACATAAGGGAAAAATCGTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16285043 CACATGAGAGAG-AAAAACATCATTTTAT
1 CACATGAG-G-GCAAAATCATCATTTTAT
*
16285071 CACATGAGGGCAAAATCATCTTTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16285098 CACATGAGGGCAAAATCATCTTTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
16285125 CACATGAGGGCAAAATCATCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
* *
16285152 CACATAAGGGCAAAAATCGTCATTTTAT
1 CACATGAGGGC-AAAATCATCATTTTAT
* * *
16285180 CACATGAGGGAAAAATCGTTATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16285207 CACATGAGGGCAAAATCGTCATTTTAT
1 CACATGAGGGCAAAATCATCATTTTAT
*
16285234 CACATAAGGG
1 CACATGAGGG
16285244 TTCAGGTACG
Statistics
Matches: 414, Mismatches: 51, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.02
27 307 0.74
28 93 0.22
29 5 0.01
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (27 bp):
CACATGAGGGCAAAATCATCATTTTAT
Found at i:16284868 original size:82 final size:81
Alignment explanation
Indices: 16284744--16285243 Score: 653
Period size: 82 Copynumber: 6.1 Consensus size: 81
16284734 AAAGGCAAAA
* *
16284744 CACATAAGGGTAAAATCGTCATTTTATCACATGAGAGAAAAATCATCATTTTATCACATGAGGGC
1 CACATAAGGGCAAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGGC
*
16284809 AAAATCTTCATTTTAT
66 AAAATCATCATTTTAT
* ** * * *
16284825 CACATAAGGGCAAAATTTGTCATTTTATCATGTGAGGGCAAAATCGTCATTTTATCACAT-AAGG
1 CACATAAGGGCAAAA-TCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGG
16284889 CAAAATTCATCATTTTAT
65 CAAAA-TCATCATTTTAT
* * * * *
16284907 CACATAAGGGCAAAAATCATCATTTTATCACATGAGAGAAAAATCATTATTTTATCATATAAGGG
1 CACATAAGGGC-AAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGG
* *
16284972 TAAAATCGTCATTTTAT
65 CAAAATCATCATTTTAT
* * * * * *
16284989 CACATGAGGGTAAAATCATTATTTTATCACATAAGGGAAAAATCGTCATTTTATCACATGAGAGA
1 CACATAAGGGCAAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAG-G-
*
16285054 G-AAAAACATCATTTTAT
64 GCAAAATCATCATTTTAT
* * * * *
16285071 CACATGAGGGCAAAATCATCTTTTTATCACATGAGGGCAAAATCATCTTTTTATCACATGAGGGC
1 CACATAAGGGCAAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGGC
16285136 AAAATCATCATTTTAT
66 AAAATCATCATTTTAT
* *
16285152 CACATAAGGGCAAAAATCGTCATTTTATCACATGAGGGAAAAATCGTTATTTTATCACATGAGGG
1 CACATAAGGGC-AAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGG
*
16285217 CAAAATCGTCATTTTAT
65 CAAAATCATCATTTTAT
16285234 CACATAAGGG
1 CACATAAGGG
16285244 TTCAGGTACG
Statistics
Matches: 363, Mismatches: 48, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.00
81 92 0.25
82 258 0.71
83 12 0.03
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (81 bp):
CACATAAGGGCAAAATCGTCATTTTATCACATGAGGGAAAAATCATCATTTTATCACATGAGGGC
AAAATCATCATTTTAT
Found at i:16284959 original size:109 final size:108
Alignment explanation
Indices: 16284744--16285243 Score: 653
Period size: 109 Copynumber: 4.6 Consensus size: 108
16284734 AAAGGCAAAA
* * * * *
16284744 CACATAAGGGTAAAATCGTCATTTTATCACATGAGAGAAAAATCATCATTTTATCACATGAGGGC
1 CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGGC
* * * **
16284809 AAAATCTTCATTTTATCACATAAGGGCAAAATTTGTCATTTTAT
66 AAAATCATCATTTTATCACATAAGAG-AAAAATCATCATTTTAT
** *
16284853 CATGTGAGGGCAAAATCGTCATTTTATCACAT-AAGGCAAAATTCATCATTTTATCACATAAGGG
1 CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAA-TCATCATTTTATCACATAAGGG
* *
16284917 CAAAAATCATCATTTTATCACATGAGAGAAAAATCATTATTTTAT
65 C-AAAATCATCATTTTATCACATAAGAGAAAAATCATCATTTTAT
* * * * * *
16284962 CATATAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATCATTATTTTATCACATAAGGGA
1 CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGGC
*
16285027 AAAATCGTCATTTTATCACATGAGAGAGAAAAA-CATCATTTTAT
66 AAAATCATCATTTTATCACAT-A-AGAGAAAAATCATCATTTTAT
* * * *
16285071 CACATGAGGGCAAAATCATCTTTTTATCACATGAGGGCAAAATCATCTTTTTATCACATGAGGGC
1 CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGGC
* *
16285136 AAAATCATCATTTTATCACATAAGGGCAAAAATCGTCATTTTAT
66 AAAATCATCATTTTATCACATAAGAG-AAAAATCATCATTTTAT
* * *
16285180 CACATGAGGGAAAAATCGTTATTTTATCACATGAGGGCAAAATCGTCATTTTATCACATAAGGG
1 CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGG
16285244 TTCAGGTACG
Statistics
Matches: 339, Mismatches: 45, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.01
108 32 0.09
109 265 0.78
110 39 0.12
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (108 bp):
CACATGAGGGCAAAATCGTCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGGC
AAAATCATCATTTTATCACATAAGAGAAAAATCATCATTTTAT
Found at i:16288352 original size:15 final size:16
Alignment explanation
Indices: 16288332--16288361 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
16288322 AAATTAGTAA
16288332 TTAAGTAAA-TAAAAC
1 TTAAGTAAAGTAAAAC
16288347 TTAAGTAAAGTAAAA
1 TTAAGTAAAGTAAAA
16288362 ATAAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (16 bp):
TTAAGTAAAGTAAAAC
Found at i:16288368 original size:27 final size:22
Alignment explanation
Indices: 16288338--16288389 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
16288328 GTAATTAAGT
*
16288338 AAATAAAACTTAAGTAAAGTAA
1 AAATAAAATTTAAGTAAAGTAA
16288360 AAATAAAATTTAAGTAAAGTAA
1 AAATAAAATTTAAGTAAAGTAA
16288382 AAATAAAA
1 AAATAAAA
16288390 AGTTACCATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.23
Consensus pattern (22 bp):
AAATAAAATTTAAGTAAAGTAA
Found at i:16293290 original size:6 final size:6
Alignment explanation
Indices: 16293279--16293305 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
16293269 CCCCGATCTT
16293279 CCCTTC CCCTTC CCCTTC CCCTTC CCC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCC
16293306 CATCCTTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.70, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCTTC
Found at i:16294848 original size:11 final size:12
Alignment explanation
Indices: 16294824--16294854 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
16294814 AAATCTAGAG
16294824 TTTTCTTCATTT
1 TTTTCTTCATTT
16294836 TTTTCTTCATTT
1 TTTTCTTCATTT
16294848 TTTTCTT
1 TTTTCTT
16294855 TATCCTCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTCTTCATTT
Found at i:16295815 original size:53 final size:51
Alignment explanation
Indices: 16295667--16295821 Score: 186
Period size: 52 Copynumber: 3.0 Consensus size: 51
16295657 TGAAGGAAAA
*
16295667 GATGTGATATGGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
1 GATGTGATATGGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* * **
16295718 AATGTGAT-TCGAGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGGA-TT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* * * *
16295770 GATGTGATAATGTGATTCCGTAAAAGACCATATCTGGGATGTGGCATCGGTA
1 GATGTGAT-ATG-GATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTA
16295822 TGTTATGTGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
50 2 0.02
51 9 0.10
52 41 0.47
53 30 0.34
54 3 0.03
55 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (51 bp):
GATGTGATATGGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
Found at i:16305095 original size:46 final size:45
Alignment explanation
Indices: 16304971--16305096 Score: 130
Period size: 46 Copynumber: 2.7 Consensus size: 45
16304961 TTGAGTTCCT
** *
16304971 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGAATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGT-TTATG-GACTAGGAATCCG
* **
16305018 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGA-T-GCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTTTATGGACTAG-GAAT--CCG
*
16305064 AGCTCGTTGAGTTGAGTCCGAGTTCGTTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTTTATGG
16305097 GCGGGTTACA
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.02
44 5 0.08
45 1 0.02
46 35 0.53
47 24 0.36
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTTTATGGACTAGGAATCCG
Found at i:16309083 original size:19 final size:20
Alignment explanation
Indices: 16309059--16309101 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
16309049 CCAAATATCC
16309059 AAAAAGTAAATTA-TTTCTA
1 AAAAAGTAAATTATTTTCTA
16309078 AAAAAGTAAATTATTTTCTA
1 AAAAAGTAAATTATTTTCTA
16309098 AAAA
1 AAAA
16309102 TTATTTTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (20 bp):
AAAAAGTAAATTATTTTCTA
Found at i:16309104 original size:14 final size:15
Alignment explanation
Indices: 16309085--16309122 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
16309075 CTAAAAAAGT
16309085 AAATTATTTTCT-AA
1 AAATTATTTTCTGAA
16309099 AAATTATTTTCTGAA
1 AAATTATTTTCTGAA
16309114 AAA-TATTTT
1 AAATTATTTT
16309123 ATTGACGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (15 bp):
AAATTATTTTCTGAA
Found at i:16310070 original size:16 final size:15
Alignment explanation
Indices: 16310049--16310095 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
16310039 TGTTATTAAA
*
16310049 TTATTAATGATTATTT
1 TTATTAAT-ATTATAT
16310065 TTATTAA-ATTATAT
1 TTATTAATATTATAT
*
16310079 TTAATAATCATTATAT
1 TTATTAAT-ATTATAT
16310095 T
1 T
16310096 ATAATATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.44
16 15 0.56
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTATTAATATTATAT
Found at i:16310268 original size:32 final size:33
Alignment explanation
Indices: 16310209--16310297 Score: 85
Period size: 32 Copynumber: 2.7 Consensus size: 33
16310199 TTCTTATGTT
* * *
16310209 ATTATAATATCATTTCATTCA-ATCAAAT-AATA
1 ATTATAATTTTATTTCATT-ATAGCAAATAAATA
16310241 ATTATAATTTTATTTCATTATAGCAAATCAAAATA
1 ATTATAATTTTATTTCATTATAGCAAAT--AAATA
*
16310276 ATGTAAAATTTT-TTTCATTATA
1 AT-TATAATTTTATTTCATTATA
16310298 ATTTTATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
31 1 0.02
32 23 0.48
35 16 0.33
36 8 0.17
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (33 bp):
ATTATAATTTTATTTCATTATAGCAAATAAATA
Found at i:16315864 original size:50 final size:51
Alignment explanation
Indices: 16315787--16315911 Score: 182
Period size: 50 Copynumber: 2.5 Consensus size: 51
16315777 GACCATGGCA
*
16315787 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGACAAA-TG
* *
16315838 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATG
* *
16315888 ACAAGTGAAAAGTGGTAGCTTCAG
1 ACAAGTGATAAGTGATAGCTTCAG
16315912 TTACCTGATC
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 43 0.64
51 24 0.36
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGACAAATG
Found at i:16315929 original size:31 final size:31
Alignment explanation
Indices: 16315891--16316131 Score: 344
Period size: 31 Copynumber: 7.8 Consensus size: 31
16315881 ACAAATGACA
*
16315891 AGTGAAAAGTGGTAGCTTCAGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
16315922 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
16315953 AGTGAAAAGTGGTAG-TTCAGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCA-GCTACCTGATC
*
16315984 AGTGAAAAGTGGTAGCTTAAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
16316015 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
16316046 AGTGAAAAGTGGTAG-TTCTGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
* * *
16316076 AGTGAAAAGTGGTAGCTCCGGGTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
** *
16316107 AGTGAATGGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
16316132 TAGTGACAAG
Statistics
Matches: 192, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
30 31 0.16
31 158 0.82
32 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:16315997 original size:93 final size:92
Alignment explanation
Indices: 16315891--16316131 Score: 392
Period size: 93 Copynumber: 2.6 Consensus size: 92
16315881 ACAAATGACA
*
16315891 AGTGAAAAGTGGTAGCTTCAGTTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGT
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGT
16315956 GAAAAGTGGTAGTTCAGGCTACCTGAT
66 GAAAAGTGGTAGTTCAGGCTACCTGAT
*
16315983 CAGTGAAAAGTGGTAGCTTAAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAG
1 -AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAG
*
16316048 TGAAAAGTGGTAGTTCTGGCTACCTGAT
65 TGAAAAGTGGTAGTTCAGGCTACCTGAT
* * * ** *
16316076 AGTGAAAAGTGGTAGCTCCGGGTACCTGATCAGTGAATGGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTAC
16316132 TAGTGACAAG
Statistics
Matches: 138, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
92 49 0.36
93 89 0.64
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (92 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATCAGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGT
GAAAAGTGGTAGTTCAGGCTACCTGAT
Done.