Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 6 of 356
Found at i:1996573 original size:22 final size:19
Alignment explanation
Indices: 1996540--1996602 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 19
1996530 CCCTACATGT
1996540 ATAAAATTTTAAAAAAAAAA
1 ATAAAA-TTTAAAAAAAAAA
* *
1996560 ATTAAAAATGTTAAATAAAAAT
1 A-T-AAAAT-TTAAAAAAAAAA
1996582 ATAAAATTTAAAAAATAAAA
1 ATAAAATTTAAAAAA-AAAA
1996602 A
1 A
1996603 ATCAATAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 7 0.20
20 10 0.29
21 3 0.09
22 15 0.43
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
ATAAAATTTAAAAAAAAAA
Found at i:1997989 original size:58 final size:56
Alignment explanation
Indices: 1997901--1998049 Score: 163
Period size: 58 Copynumber: 2.6 Consensus size: 56
1997891 AATTGAACCT
* *
1997901 AAAAAAAAGCTTAGGTACCAAATTAGGAAAAAAAGTCAAGTTCAGGTACCAAATTGGGC
1 AAAAAAAA-TTTA-GTACCAAA-TAAGAAAAAAAGTCAAGTTCAGGTACCAAATTGGGC
** ** * *
1997960 TCAAAAAATTTATGTACCAAACTAAGAAAAAGTGTCAAGTTCAGGTATCAAATTTGGC
1 AAAAAAAATTTA-GTACCAAA-TAAGAAAAAAAGTCAAGTTCAGGTACCAAATTGGGC
*
1998018 AAAAAAAATTTAGATACCAAATTAGAAAAAAA
1 AAAAAAAATTTAG-TACCAAATAAGAAAAAAA
1998050 TGTTAAATTC
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
57 9 0.12
58 59 0.80
59 6 0.08
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.22
Consensus pattern (56 bp):
AAAAAAAATTTAGTACCAAATAAGAAAAAAAGTCAAGTTCAGGTACCAAATTGGGC
Found at i:2002934 original size:45 final size:46
Alignment explanation
Indices: 2002883--2002973 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
2002873 TAAATTTATG
2002883 TCTAATCACTTAGA-TTGGTAATTGATTCATATTAAATGTATAATA
1 TCTAATCACTTAGATTTGGTAATTGATTCATATTAAATGTATAATA
* *
2002928 TCTAATCAGTTAGATTTGGTAGTTGATTCATATTAAATGTATAATA
1 TCTAATCACTTAGATTTGGTAATTGATTCATATTAAATGTATAATA
2002974 AAAAACAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
45 13 0.30
46 30 0.70
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.43
Consensus pattern (46 bp):
TCTAATCACTTAGATTTGGTAATTGATTCATATTAAATGTATAATA
Found at i:2005584 original size:45 final size:46
Alignment explanation
Indices: 2005535--2005628 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 46
2005525 TTTAAAATAA
2005535 TTTAACCATCAATCTTTACACGTTGTGTAA-TTTTTTTTGTGCAAT
1 TTTAACCATCAATCTTTACACGTTGTGTAATTTTTTTTTGTGCAAT
* *
2005580 TTTAACCCTCAATCTTTACACGTTGTGTAATTTTTTTTTTTGCAAT
1 TTTAACCATCAATCTTTACACGTTGTGTAATTTTTTTTTGTGCAAT
2005626 TTT
1 TTT
2005629 GATTTCTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 29 0.63
46 17 0.37
ACGTcount: A:0.22, C:0.16, G:0.10, T:0.52
Consensus pattern (46 bp):
TTTAACCATCAATCTTTACACGTTGTGTAATTTTTTTTTGTGCAAT
Found at i:2011331 original size:6 final size:6
Alignment explanation
Indices: 2011313--2011354 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
2011303 TAATCATACT
* *
2011313 CCGAA- CCGAAC CTGAAC CTGAAC CCGAAC CCGAAC CCGAAC C
1 CCGAAC CCGAAC CCGAAC CCGAAC CCGAAC CCGAAC CCGAAC C
2011355 GAATCAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.33, C:0.45, G:0.17, T:0.05
Consensus pattern (6 bp):
CCGAAC
Found at i:2011669 original size:17 final size:17
Alignment explanation
Indices: 2011632--2011670 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
2011622 ACGAAACACT
* **
2011632 AAAAACCAGAAAAAAGG
1 AAAAACCAAAAAAAAAA
2011649 AAAAACCAAAAAAAAAA
1 AAAAACCAAAAAAAAAA
2011666 AAAAA
1 AAAAA
2011671 ACAGTTGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.82, C:0.10, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAACCAAAAAAAAAA
Found at i:2016670 original size:31 final size:31
Alignment explanation
Indices: 2016620--2016678 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
2016610 AAATAGTTAC
*
2016620 TAAATTATTTGAAAGTTTTTATTTAAGTAAT
1 TAAACTATTTGAAAGTTTTTATTTAAGTAAT
2016651 TAAACTATTTGATAA-TTTTTATTTAAGT
1 TAAACTATTTGA-AAGTTTTTATTTAAGT
2016679 TATTGAGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (31 bp):
TAAACTATTTGAAAGTTTTTATTTAAGTAAT
Found at i:2018212 original size:15 final size:16
Alignment explanation
Indices: 2018186--2018231 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
2018176 TATAATGGTA
2018186 AATTTA-ATTTTTAAT
1 AATTTATATTTTTAAT
*
2018201 -ATTTATATTTTTTATT
1 AATTTATA-TTTTTAAT
*
2018217 AATTTATTTTTTTAA
1 AATTTATATTTTTAA
2018232 ATTAAATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 5 0.20
15 1 0.04
16 13 0.52
17 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
AATTTATATTTTTAAT
Found at i:2018214 original size:16 final size:16
Alignment explanation
Indices: 2018193--2018231 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2018183 GTAAATTTAA
2018193 TTTTTAAT-ATTTATAT
1 TTTTTAATAATTTAT-T
*
2018209 TTTTTATTAATTTATT
1 TTTTTAATAATTTATT
2018225 TTTTTAA
1 TTTTTAA
2018232 ATTAAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTAATAATTTATT
Found at i:2026908 original size:11 final size:11
Alignment explanation
Indices: 2026892--2026921 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
2026882 AAGAATCCAG
2026892 GAAAATGCCAA
1 GAAAATGCCAA
2026903 GAAAATGCCAA
1 GAAAATGCCAA
2026914 GAAAATGC
1 GAAAATGC
2026922 AGAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.53, C:0.17, G:0.20, T:0.10
Consensus pattern (11 bp):
GAAAATGCCAA
Found at i:2027542 original size:29 final size:29
Alignment explanation
Indices: 2027486--2027558 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
2027476 TTGGACATAG
2027486 AGTCAAATATTA-TTTTTTTCCAAGAAAA
1 AGTCAAATATTATTTTTTTTCCAAGAAAA
* *
2027514 AGTCAAATATTATTTTTTTTCCTATAAAA
1 AGTCAAATATTATTTTTTTTCCAAGAAAA
2027543 AGTCAAATATT-TTTTT
1 AGTCAAATATTATTTTT
2027559 CTATAAACGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 17 0.40
29 25 0.60
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (29 bp):
AGTCAAATATTATTTTTTTTCCAAGAAAA
Found at i:2028036 original size:11 final size:11
Alignment explanation
Indices: 2028022--2028114 Score: 68
Period size: 11 Copynumber: 8.0 Consensus size: 11
2028012 CTCTAATGTA
2028022 AATATTAAAAT
1 AATATTAAAAT
2028033 AATATTAAAAT
1 AATATTAAAAT
2028044 AACTATATAAAA-
1 AA-TAT-TAAAAT
2028056 AATA--AAATTATT
1 AATATTAAA--A-T
2028068 AATATTAAAAT
1 AATATTAAAAT
2028079 AATATAATATAAAT
1 AATAT--TA-AAAT
*
2028093 -ATTTTAAAAT
1 AATATTAAAAT
2028103 AATATTTAAAAT
1 AATA-TTAAAAT
2028115 GTAATATGAG
Statistics
Matches: 67, Mismatches: 2, Indels: 25
0.71 0.02 0.27
Matches are distributed among these distances:
8 3 0.04
10 5 0.07
11 25 0.37
12 17 0.25
13 10 0.15
14 7 0.10
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:2028101 original size:24 final size:23
Alignment explanation
Indices: 2028015--2028107 Score: 84
Period size: 23 Copynumber: 4.0 Consensus size: 23
2028005 AATATTACTC
*
2028015 TAATGTAAATA-TTAAAATAATA
1 TAATATAAATATTTAAAATAATA
* * *
2028037 TTAAAATAACTATATAAAA-AATA
1 -TAATATAAATATTTAAAATAATA
* *
2028060 AAATTATTAATA-TTAAAATAATA
1 TAA-TATAAATATTTAAAATAATA
2028083 TAATATAAATATTTTAAAATAATA
1 TAATATAAATA-TTTAAAATAATA
2028107 T
1 T
2028108 TTAAAATGTA
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
22 14 0.26
23 23 0.43
24 17 0.31
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (23 bp):
TAATATAAATATTTAAAATAATA
Found at i:2028106 original size:35 final size:32
Alignment explanation
Indices: 2028025--2028114 Score: 83
Period size: 35 Copynumber: 2.6 Consensus size: 32
2028015 TAATGTAAAT
2028025 ATTAAAATAATATTAAAATAACTATATAAAAA
1 ATTAAAATAATATTAAAATAACTATATAAAAA
*
2028057 ATAAAATTATTAATATTAAAATAA-TATAATATAAATA
1 ATTAAA--A-TAATATTAAAATAACTAT-ATA-AAA-A
*
2028094 TTTTAAAATAATATTTAAAAT
1 -ATTAAAATAATA-TTAAAAT
2028115 GTAATATGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
32 5 0.11
34 4 0.09
35 22 0.47
36 11 0.23
37 1 0.02
38 4 0.09
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (32 bp):
ATTAAAATAATATTAAAATAACTATATAAAAA
Found at i:2032961 original size:21 final size:21
Alignment explanation
Indices: 2032899--2032963 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
2032889 CCTAATCAGT
*
2032899 ATACGACACATAAAGTGCCTA
1 ATACGACACATAAAGTGCCTG
* ** *
2032920 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
2032941 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
2032962 AT
1 AT
2032964 CGATAAAGCC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:2033358 original size:15 final size:15
Alignment explanation
Indices: 2033333--2033390 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
2033323 TCATATATAT
*
2033333 TATATAATTCATTCAA
1 TATA-AATTCAATCAA
2033349 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
2033364 AATAATTTCAATCAA
1 TATAAATTCAATCAA
2033379 TATAAATTCAAT
1 TATAAATTCAAT
2033391 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:2034667 original size:5 final size:5
Alignment explanation
Indices: 2034659--2034685 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
2034649 TCTTTAGTTT
2034659 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
2034686 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:2038072 original size:16 final size:17
Alignment explanation
Indices: 2038042--2038074 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2038032 TTAGATTTTT
*
2038042 TTTTATAATTTATAATA
1 TTTTATAATTAATAATA
2038059 TTTTA-AATTAATAATA
1 TTTTATAATTAATAATA
2038075 ATAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTATAATTAATAATA
Found at i:2047221 original size:19 final size:19
Alignment explanation
Indices: 2047171--2047222 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
2047161 TCTTATATTA
2047171 TTAAATTTAATTATTAACC
1 TTAAATTTAATTATTAACC
** *
2047190 TT-AATACATATTATTAATC
1 TTAAATTTA-ATTATTAACC
2047209 TTAAATTTAATTAT
1 TTAAATTTAATTAT
2047223 ATTTCAAGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
18 4 0.15
19 18 0.69
20 4 0.15
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAAATTTAATTATTAACC
Found at i:2051268 original size:31 final size:31
Alignment explanation
Indices: 2051231--2051290 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
2051221 TTTAATTTGC
2051231 TCAATTTTAGTCCCTAT-GTTTTTTGAATTGG
1 TCAATTTTAGTCCCTATAG-TTTTTGAATTGG
*
2051262 TCAATTTTAGTCCTTATAGTTTTTGAATT
1 TCAATTTTAGTCCCTATAGTTTTTGAATT
2051291 ATGAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.53
Consensus pattern (31 bp):
TCAATTTTAGTCCCTATAGTTTTTGAATTGG
Found at i:2051299 original size:31 final size:31
Alignment explanation
Indices: 2051233--2051306 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
2051223 TAATTTGCTC
* *
2051233 AATTTTAGTCCCTATGTTTTTTGAATTGGTC
1 AATTTTAGTCCTTATGTTTTTTGAATTGGTA
*
2051264 AATTTTAGTCCTTATAG-TTTTTGAATT-ATGA
1 AATTTTAGTCCTTAT-GTTTTTTGAATTGGT-A
2051295 AATTTTAGTCCT
1 AATTTTAGTCCT
2051307 GACTTGGTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 1 0.03
31 36 0.95
32 1 0.03
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.51
Consensus pattern (31 bp):
AATTTTAGTCCTTATGTTTTTTGAATTGGTA
Found at i:2057655 original size:40 final size:40
Alignment explanation
Indices: 2057610--2057690 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
2057600 ATAATTATAT
* *
2057610 TTCATACTTATATTTCAACTTTACTGGTACAAGTGTGTAC
1 TTCATACTTATATTTCAACTTTACAGATACAAGTGTGTAC
2057650 TTCATACTTATATTTCAACTTTACAGATACAAGTGTGTAC
1 TTCATACTTATATTTCAACTTTACAGATACAAGTGTGTAC
2057690 T
1 T
2057691 GGTAAAAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (40 bp):
TTCATACTTATATTTCAACTTTACAGATACAAGTGTGTAC
Found at i:2074564 original size:31 final size:31
Alignment explanation
Indices: 2074528--2074594 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
2074518 TTAACAGTTT
*
2074528 AATGATTTAAATAAAAAATTTTAAATAATTA
1 AATGATTTAAATAAAAAAGTTTAAATAATTA
* * *
2074559 AATGATTTAAATGAAAACGTTTAAATAATTT
1 AATGATTTAAATAAAAAAGTTTAAATAATTA
2074590 AATGA
1 AATGA
2074595 CCATTTTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.37
Consensus pattern (31 bp):
AATGATTTAAATAAAAAAGTTTAAATAATTA
Found at i:2076231 original size:18 final size:17
Alignment explanation
Indices: 2076210--2076245 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
2076200 TAAAAGATTT
2076210 AAAGTAAAAAAAATTAAA
1 AAAGTAAAAAAAA-TAAA
2076228 AAAGTAAAAAAAATAAA
1 AAAGTAAAAAAAATAAA
2076245 A
1 A
2076246 GTTCAATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAGTAAAAAAAATAAA
Found at i:2076236 original size:17 final size:18
Alignment explanation
Indices: 2076210--2076245 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
2076200 TAAAAGATTT
*
2076210 AAAGTAAAAAAAATTAAA
1 AAAGTAAAAAAAAATAAA
2076228 AAAGT-AAAAAAAATAAA
1 AAAGTAAAAAAAAATAAA
2076245 A
1 A
2076246 GTTCAATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAGTAAAAAAAAATAAA
Found at i:2076661 original size:29 final size:27
Alignment explanation
Indices: 2076629--2076690 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
2076619 TTGAAACTCG
2076629 AAAAATAAAGAACTAAATTTCTAAAAATA
1 AAAAATAAAG-ACTAAATTT-TAAAAATA
* **
2076658 AAAATATAATGACTAAATTTTAAATTTA
1 AAAA-ATAAAGACTAAATTTTAAAAATA
2076686 AAAAA
1 AAAAA
2076691 ATATATACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 10 0.34
29 13 0.45
30 5 0.17
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (27 bp):
AAAAATAAAGACTAAATTTTAAAAATA
Found at i:2090190 original size:18 final size:19
Alignment explanation
Indices: 2090152--2090193 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
2090142 GAACTTGATA
2090152 TTTTAAGCGGTCCTAATTT
1 TTTTAAGCGGTCCTAATTT
2090171 TTTTAAGCGGTCCTAATTT
1 TTTTAAGCGGTCCTAATTT
2090190 TTTT
1 TTTT
2090194 GTCTAAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.52
Consensus pattern (19 bp):
TTTTAAGCGGTCCTAATTT
Found at i:2095940 original size:21 final size:21
Alignment explanation
Indices: 2095915--2095957 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
2095905 ATTAAAGAAA
*
2095915 ATAAAAATATTAAGTTCCTTC
1 ATAAAAATATTAAGTTACTTC
2095936 ATAAAAATATTAAGTTACTTC
1 ATAAAAATATTAAGTTACTTC
2095957 A
1 A
2095958 CGTAGCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (21 bp):
ATAAAAATATTAAGTTACTTC
Found at i:2096566 original size:21 final size:21
Alignment explanation
Indices: 2096524--2096566 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
2096514 AATAATTATT
*
2096524 AGATATTGTTAAAATTTGTAA
1 AGATATTGTTAAAATTTATAA
*
2096545 AGATGTTGTTGAAAA-TTATAA
1 AGATATTGTT-AAAATTTATAA
2096566 A
1 A
2096567 ATAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (21 bp):
AGATATTGTTAAAATTTATAA
Found at i:2096904 original size:10 final size:10
Alignment explanation
Indices: 2096889--2096913 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2096879 TTATTTTCGA
2096889 TTTTTAATAT
1 TTTTTAATAT
2096899 TTTTTAATAT
1 TTTTTAATAT
2096909 TTTTT
1 TTTTT
2096914 GGGTCCGGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTAATAT
Found at i:2097754 original size:41 final size:43
Alignment explanation
Indices: 2097707--2097792 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
2097697 TCAATTGCCA
*
2097707 TTCAACGTTCATCTTA-AATTTGAA-TTTGAAAAATCAGACCG
1 TTCAACGTTCATCTTATAATTTGAATTTTGAAAAACCAGACCG
*
2097748 TTCAACGTTCATCTTATATTTTGAATTTTGAAAAACCAGACCG
1 TTCAACGTTCATCTTATAATTTGAATTTTGAAAAACCAGACCG
2097791 TT
1 TT
2097793 GCTCACCTCG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 16 0.39
42 7 0.17
43 18 0.44
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (43 bp):
TTCAACGTTCATCTTATAATTTGAATTTTGAAAAACCAGACCG
Found at i:2098400 original size:6 final size:6
Alignment explanation
Indices: 2098385--2098425 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
2098375 TAAAATGTCT
2098385 TTTTTG -TTTTG TTTTTG TTTTTG ATTTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG --TTTTTG TTTTTG TTTTT
2098426 TACATTGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
5 10 0.31
6 16 0.50
8 6 0.19
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:2098415 original size:14 final size:13
Alignment explanation
Indices: 2098384--2098426 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
2098374 GTAAAATGTC
2098384 TTTTTTG-TTTTG
1 TTTTTTGTTTTTG
2098396 -TTTTTGTTTTTG
1 TTTTTTGTTTTTG
2098408 ATTTTTTGTTTTT-
1 -TTTTTTGTTTTTG
2098421 TTTTTT
1 TTTTTT
2098427 ACATTGGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 6 0.21
12 11 0.39
14 11 0.39
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (13 bp):
TTTTTTGTTTTTG
Found at i:2098843 original size:12 final size:12
Alignment explanation
Indices: 2098828--2098860 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
2098818 GAAGAAGCTG
2098828 AGAAAGAAACCA
1 AGAAAGAAACCA
*
2098840 AGAAAAAAACCA
1 AGAAAGAAACCA
2098852 AGAAAGAAA
1 AGAAAGAAA
2098861 GGGATCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.73, C:0.12, G:0.15, T:0.00
Consensus pattern (12 bp):
AGAAAGAAACCA
Found at i:2107158 original size:9 final size:9
Alignment explanation
Indices: 2107144--2107222 Score: 56
Period size: 9 Copynumber: 8.8 Consensus size: 9
2107134 CTTGCCATGG
2107144 AAAGAAGGA
1 AAAGAAGGA
2107153 AAAGAA-G-
1 AAAGAAGGA
* *
2107160 -ATGAAAGA
1 AAAGAAGGA
*
2107168 CAAGAAGGA
1 AAAGAAGGA
2107177 GAAAGACAAGGA
1 -AAAG--AAGGA
* *
2107189 CAGGAAGGA
1 AAAGAAGGA
*
2107198 AAAGAAAGA
1 AAAGAAGGA
2107207 AAAGAAGGA
1 AAAGAAGGA
2107216 AAAGAAG
1 AAAGAAG
2107223 ACCGAGAGCA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
6 4 0.07
7 1 0.02
8 1 0.02
9 38 0.70
10 3 0.06
11 2 0.04
12 5 0.09
ACGTcount: A:0.63, C:0.04, G:0.32, T:0.01
Consensus pattern (9 bp):
AAAGAAGGA
Found at i:2109077 original size:3 final size:3
Alignment explanation
Indices: 2109069--2109096 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2109059 ATCTATATAG
2109069 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
2109097 CCTAATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:2109474 original size:17 final size:17
Alignment explanation
Indices: 2109428--2109480 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 17
2109418 TTTTTATTGC
2109428 TATTATTATTATTTTATT
1 TATTA-TATTATTTTATT
*
2109446 TATTATAATATTTTATT
1 TATTATATTATTTTATT
2109463 T-TTACTATTATTGTTATT
1 TATTA-TATTATT-TTATT
2109481 ATCACTACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 3 0.10
17 18 0.58
18 10 0.32
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TATTATATTATTTTATT
Found at i:2114686 original size:35 final size:35
Alignment explanation
Indices: 2114640--2114711 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
2114630 CAAAAACATG
*
2114640 ATCTCAATCTAATTAAAACCAAATCATGACATTAC
1 ATCTCAATCTAATCAAAACCAAATCATGACATTAC
*
2114675 ATCTCAATCTAATCAAAATCAAATCATGACATTAC
1 ATCTCAATCTAATCAAAACCAAATCATGACATTAC
2114710 AT
1 AT
2114712 ACATTCAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.29
Consensus pattern (35 bp):
ATCTCAATCTAATCAAAACCAAATCATGACATTAC
Found at i:2118342 original size:23 final size:23
Alignment explanation
Indices: 2118312--2118384 Score: 82
Period size: 21 Copynumber: 3.3 Consensus size: 23
2118302 GCTTTACTGA
* *
2118312 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
2118335 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
2118356 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
2118378 T-AGGCAC
1 TCAGGCAC
2118385 TTTATGTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 26 0.58
22 1 0.02
23 18 0.40
ACGTcount: A:0.15, C:0.25, G:0.26, T:0.34
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:2118359 original size:21 final size:21
Alignment explanation
Indices: 2118324--2118384 Score: 86
Period size: 21 Copynumber: 2.8 Consensus size: 21
2118314 AGGCACTTTA
2118324 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
2118347 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
2118368 TGTGTCGTTTTAGGCAC
1 TGTGTCGTATCAGGCAC
2118385 TTTATGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 27 0.75
23 9 0.25
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:2122597 original size:50 final size:50
Alignment explanation
Indices: 2122473--2122721 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
2122463 GATAATAACA
* * ** * *
2122473 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
2122524 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
2122574 TGCCAACGCTATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
2122624 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
2122679 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
2122722 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.54
51 33 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:2122648 original size:100 final size:104
Alignment explanation
Indices: 2122472--2122721 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
2122462 TGATAATAAC
**
2122472 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
2122537 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
2122574 -TGCCAACGCTATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
2122637 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
2122679 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
2122722 TTACCCAAAT
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 35 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:2122837 original size:13 final size:13
Alignment explanation
Indices: 2122816--2122847 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2122806 GCTTGGATCA
*
2122816 TCATCAAATAAAT
1 TCATAAAATAAAT
2122829 TCATAAAATAAAT
1 TCATAAAATAAAT
2122842 TCATAA
1 TCATAA
2122848 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:2123093 original size:30 final size:30
Alignment explanation
Indices: 2123059--2123116 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2123049 CCTCGACTCT
*
2123059 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
2123089 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
2123117 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:2125388 original size:29 final size:29
Alignment explanation
Indices: 2125343--2125427 Score: 145
Period size: 29 Copynumber: 3.0 Consensus size: 29
2125333 AACACACCAG
2125343 TATAATCC-TCCAAAACACACCAGAATAA
1 TATAATCCATCCAAAACACACCAGAATAA
* *
2125371 TATAATCCACCCAAAACACATCAGAATAA
1 TATAATCCATCCAAAACACACCAGAATAA
2125400 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCCATCCAAAACACACCAGAATA
2125428 GCACAAAGTG
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 8 0.15
29 44 0.85
ACGTcount: A:0.51, C:0.28, G:0.04, T:0.18
Consensus pattern (29 bp):
TATAATCCATCCAAAACACACCAGAATAA
Found at i:2128344 original size:18 final size:19
Alignment explanation
Indices: 2128323--2128363 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
2128313 AATGAAATGA
2128323 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
2128341 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
2128360 GAAA
1 GAAA
2128364 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:2143780 original size:27 final size:27
Alignment explanation
Indices: 2143739--2143790 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
2143729 GACGATCAGC
* *
2143739 ATCAGCATCAGCACCACCACCACCACT
1 ATCACCATCAACACCACCACCACCACT
* *
2143766 ATCACCATCAACACCGCCGCCACCA
1 ATCACCATCAACACCACCACCACCA
2143791 TCACCACCGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.50, G:0.08, T:0.10
Consensus pattern (27 bp):
ATCACCATCAACACCACCACCACCACT
Found at i:2143789 original size:18 final size:18
Alignment explanation
Indices: 2143768--2143805 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
2143758 CCACCACTAT
2143768 CACCATCAACACCGCCGC
1 CACCATCAACACCGCCGC
*
2143786 CACCATCACCACCGCCGC
1 CACCATCAACACCGCCGC
2143804 CA
1 CA
2143806 TAACGGAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.58, G:0.11, T:0.05
Consensus pattern (18 bp):
CACCATCAACACCGCCGC
Found at i:2148348 original size:41 final size:41
Alignment explanation
Indices: 2148286--2148367 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
2148276 TTATATATTT
*
2148286 CTCGAACCCTAAAAAGATAGTTTATGTTAAAAATAATGTGA
1 CTCGAACCCTAAAAAGATAGTTTATGTCAAAAATAATGTGA
* * *
2148327 CTCGGACCCTAAAGAGATAGTTTATGTCAAAAATGATGTGA
1 CTCGAACCCTAAAAAGATAGTTTATGTCAAAAATAATGTGA
2148368 TTAGTGAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (41 bp):
CTCGAACCCTAAAAAGATAGTTTATGTCAAAAATAATGTGA
Found at i:2148959 original size:13 final size:14
Alignment explanation
Indices: 2148939--2148971 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2148929 ACTTGAATTC
*
2148939 AGTTTTAATATTTA
1 AGTTTTAATACTTA
2148953 A-TTTTAATACTTA
1 AGTTTTAATACTTA
2148966 AGTTTT
1 AGTTTT
2148972 TCAAATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (14 bp):
AGTTTTAATACTTA
Found at i:2157333 original size:24 final size:24
Alignment explanation
Indices: 2157258--2157333 Score: 57
Period size: 26 Copynumber: 3.0 Consensus size: 24
2157248 TGTTGAAAAC
* *
2157258 AAATAAATTAATTTAACTAATTTAAA
1 AAATAAATTTATTT-AC-AAATTAAA
*
2157284 ATAA-AATATTTATTTTACATCA-TAAA
1 A-AATAA-ATTTA-TTTACA-AATTAAA
2157310 AAATAAATTTATTTACAAATTAAA
1 AAATAAATTTATTTACAAATTAAA
2157334 TTAATAATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
23 1 0.03
24 10 0.25
25 7 0.17
26 11 0.28
27 8 0.20
28 3 0.08
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (24 bp):
AAATAAATTTATTTACAAATTAAA
Found at i:2162409 original size:18 final size:18
Alignment explanation
Indices: 2162330--2162423 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
2162320 CAAGGTCACG
*
2162330 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
2162348 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
2162366 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
2162384 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
2162402 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
2162417 ATCAATA
1 ATCAATA
2162424 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:2162410 original size:9 final size:9
Alignment explanation
Indices: 2162330--2162410 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
2162320 CAAGGTCACG
*
2162330 ATCAATAGC
1 ATCAATATC
* *
2162339 GTCACTATC
1 ATCAATATC
*
2162348 ATCAATAGC
1 ATCAATATC
* * *
2162357 GTCACTAGC
1 ATCAATATC
2162366 ATCAATATC
1 ATCAATATC
* * *
2162375 GTCACTAGC
1 ATCAATATC
2162384 ATCAATATC
1 ATCAATATC
* *
2162393 GTCACTATC
1 ATCAATATC
2162402 ATCAATATC
1 ATCAATATC
2162411 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:2168388 original size:186 final size:188
Alignment explanation
Indices: 2168013--2168582 Score: 842
Period size: 196 Copynumber: 3.0 Consensus size: 188
2168003 CACATTAGAG
* * * *
2168013 ATGTTTAATTCGTGTATACATGCCTTAGCTCATGTCCTTTTCATGTAAACCGTGTA-AATATAAA
1 ATGTTTAATTCGTGTATACATCCCTTAGCTCATGTACTTTTCGTGTAAACCGTG-AGAGTATAAA
* * * * * * *
2168077 TTCAATACAAATAATTATGTGTCAAAATCCTAAATACGAGTACTACAAATGTA-CTAAATGTGTT
65 TTCAATACAAATTATTATGTGTCAAGATCCTAAATATGAGTACAATAAATGTACCAAAATGCGTT
* *
2168141 GTGTTTATGTCATGTTTTCAGATCGTCAAATCTAGAAAAGAAACCCGATCAAAAAATGA
130 GTGTTTATGTCATGTTTTCATATCGTCAAATCTAGAAAAGAAACCCGAGCAAAAAATGA
2168200 ATGTTTAATTCGTGTATACATCCCTTAGCTCATGTACTTTTCGTGTAAACCGTGAGAGTATAAAT
1 ATGTTTAATTCGTGTATACATCCCTTAGCTCATGTACTTTTCGTGTAAACCGTGAGAGTATAAAT
* *
2168265 TCAATACAAATTA-T-TGTGTCAAGATCCTAAATATGAGTGCGATAAATGTACCAAAATGCGTTG
66 TCAATACAAATTATTATGTGTCAAGATCCTAAATATGAGTACAATAAATGTACCAAAATGCGTTG
2168328 TGTTTATGTCATGTTTTCATATCGTCAAATCTAGAAAAGAAACCCGAGCAAAAAATGA
131 TGTTTATGTCATGTTTTCATATCGTCAAATCTAGAAAAGAAACCCGAGCAAAAAATGA
* * *
2168386 ATGTTTAATTCATGTCTACATGTCTACATCCCTTAGCTCGTGTTCTTTTCGTGTAAACCGTGAGA
1 ATGTTTAATTC--G------TGTATACATCCCTTAGCTCATGTACTTTTCGTGTAAACCGTGAGA
*
2168451 GTATAAATTCAGTACAAATTATTATGTGTCAAGATCCTAAATATGAGTACAATAAATGTACCAAA
58 GTATAAATTCAATACAAATTATTATGTGTCAAGATCCTAAATATGAGTACAATAAATGTACCAAA
* *
2168516 ATGCGTTGTGTTTATGTTATGTTTTCATATCGTCAAATCTAGAAAAGAAGCCCGAGCAAAAAATG
123 ATGCGTTGTGTTTATGTCATGTTTTCATATCGTCAAATCTAGAAAAGAAACCCGAGCAAAAAATG
2168581 A
188 A
2168582 A
1 A
2168583 GGTACCTGAT
Statistics
Matches: 349, Mismatches: 22, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
185 31 0.09
186 79 0.23
187 71 0.20
188 1 0.00
194 62 0.18
195 1 0.00
196 104 0.30
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (188 bp):
ATGTTTAATTCGTGTATACATCCCTTAGCTCATGTACTTTTCGTGTAAACCGTGAGAGTATAAAT
TCAATACAAATTATTATGTGTCAAGATCCTAAATATGAGTACAATAAATGTACCAAAATGCGTTG
TGTTTATGTCATGTTTTCATATCGTCAAATCTAGAAAAGAAACCCGAGCAAAAAATGA
Found at i:2177349 original size:18 final size:18
Alignment explanation
Indices: 2177326--2177373 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
2177316 GGTTTCTTGA
2177326 TTTTTTTAGGGGTTAGGT
1 TTTTTTTAGGGGTTAGGT
* *
2177344 TTTTTTTTGGGATTAGGT
1 TTTTTTTAGGGGTTAGGT
2177362 TTTTTTTAGGGG
1 TTTTTTTAGGGG
2177374 CTTAATGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.10, C:0.00, G:0.31, T:0.58
Consensus pattern (18 bp):
TTTTTTTAGGGGTTAGGT
Found at i:2180917 original size:16 final size:16
Alignment explanation
Indices: 2180884--2180917 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2180874 GATTGGTGTT
* *
2180884 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
2180900 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
2180916 AA
1 AA
2180918 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:2183752 original size:21 final size:21
Alignment explanation
Indices: 2183718--2183758 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2183708 AGATGAGCAA
* * *
2183718 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
2183739 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
2183759 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:2185697 original size:16 final size:16
Alignment explanation
Indices: 2185664--2185697 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2185654 GGAGATTGTT
* *
2185664 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
2185680 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
2185696 AA
1 AA
2185698 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:2187172 original size:30 final size:30
Alignment explanation
Indices: 2187138--2187221 Score: 91
Period size: 29 Copynumber: 2.8 Consensus size: 30
2187128 TAGCTTGACA
* *
2187138 TAATTTTTTAAATCTAAAAAATAGAGAAAC
1 TAATTTTTTAAATATAAAAAATACAGAAAC
* *
2187168 TAATTTTTTAAAAAT-AAAAATACATAAAC
1 TAATTTTTTAAATATAAAAAATACAGAAAC
* *
2187197 TAA-ATTTTAAATTTAAAAATATACA
1 TAATTTTTTAAATATAAAAA-ATACA
2187222 ATAACATAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
28 8 0.18
29 19 0.42
30 18 0.40
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (30 bp):
TAATTTTTTAAATATAAAAAATACAGAAAC
Found at i:2187186 original size:29 final size:29
Alignment explanation
Indices: 2187138--2187217 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 29
2187128 TAGCTTGACA
* *
2187138 TAATTTTTTAAATCTAAAAAATAGAGAAAC
1 TAATTTTTTAAATAT-AAAAATACAGAAAC
* *
2187168 TAATTTTTTAAAAATAAAAATACATAAAC
1 TAATTTTTTAAATATAAAAATACAGAAAC
* *
2187197 TAA-ATTTTAAATTTAAAAATA
1 TAATTTTTTAAATATAAAAATA
2187218 TACAATAACA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 15 0.35
29 15 0.35
30 13 0.30
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (29 bp):
TAATTTTTTAAATATAAAAATACAGAAAC
Found at i:2195710 original size:20 final size:22
Alignment explanation
Indices: 2195685--2195734 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
2195675 AATTAAGTTT
2195685 ATTTAAAAT-AAAAATATTA-A
1 ATTTAAAATAAAAAATATTATA
2195705 ATTT-AAATAAAAAATATTATA
1 ATTTAAAATAAAAAATATTATA
2195726 ATATTAAAA
1 AT-TTAAAA
2195735 CAATTTTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.15
20 14 0.54
21 3 0.12
22 2 0.08
23 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTTAAAATAAAAAATATTATA
Found at i:2197451 original size:12 final size:13
Alignment explanation
Indices: 2197431--2197493 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 13
2197421 TAAATAATTA
2197431 TTAAATTAA-AAT
1 TTAAATTAATAAT
*
2197443 TTAACTTAATAATT
1 TTAAATTAATAA-T
2197457 ATTAAATTAA-AAT
1 -TTAAATTAATAAT
*
2197470 TTAACTTAATAATT
1 TTAAATTAATAA-T
2197484 ATTAAATTAA
1 -TTAAATTAA
2197494 ATTTAAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
12 16 0.39
13 5 0.12
14 4 0.10
15 16 0.39
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAATTAATAAT
Found at i:2197453 original size:27 final size:27
Alignment explanation
Indices: 2197415--2197499 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
2197405 AATCAAATTT
2197415 TTTAA-TTAAATAATTATTAAATTAAAA
1 TTTAACTT-AATAATTATTAAATTAAAA
2197442 TTTAACTTAATAATTATTAAATTAAAA
1 TTTAACTTAATAATTATTAAATTAAAA
2197469 TTTAACTTAATAATTATTAAATT-AAA
1 TTTAACTTAATAATTATTAAATTAAAA
2197495 TTTAA
1 TTTAA
2197500 AATTTTTTCC
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
26 8 0.14
27 47 0.82
28 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
TTTAACTTAATAATTATTAAATTAAAA
Found at i:2199990 original size:17 final size:18
Alignment explanation
Indices: 2199963--2199999 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
2199953 ATGCCATAAT
*
2199963 TTAATTTTTTATAATATA
1 TTAATTTTTTATAAAATA
2199981 TTAA-TTTTTATAAAATA
1 TTAATTTTTTATAAAATA
2199998 TT
1 TT
2200000 TAAAAATGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAATTTTTTATAAAATA
Found at i:2200002 original size:18 final size:17
Alignment explanation
Indices: 2199961--2200002 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
2199951 ATATGCCATA
*
2199961 ATTTAATTTTTTATAAT
1 ATTTAATTTTTTAAAAT
2199978 ATATTAATTTTTATAAAAT
1 AT-TTAATTTTT-TAAAAT
2199997 ATTTAA
1 ATTTAA
2200003 AAATGTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 13 0.59
19 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATTTTTTAAAAT
Found at i:2205473 original size:22 final size:21
Alignment explanation
Indices: 2205423--2205487 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
2205413 GTTTGGTTTT
* *
2205423 TAAAATTTTT-ATTTGTTTTA
1 TAAAATTTTTAATTTATTTAA
**
2205443 TAATTTTTTTAATATTATTTAA
1 TAAAATTTTTAAT-TTATTTAA
*
2205465 TAAAATTTTAAAGTTTATTTAA
1 TAAAATTTTTAA-TTTATTTAA
2205487 T
1 T
2205488 GAGTATTTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
20 8 0.23
21 2 0.06
22 24 0.69
23 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
TAAAATTTTTAATTTATTTAA
Found at i:2206630 original size:43 final size:43
Alignment explanation
Indices: 2206578--2206665 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
2206568 GTTTGTGAAA
*
2206578 AGAAAAACAATTTATGGTGACTACCCGCCAAAAAGTTTGGAGG
1 AGAAAAACAATTTATGGTGACTACCCGCCAAAAAGTATGGAGG
*
2206621 AGAAAAACAATTTATGGTGACTACTCGCCAAAAAGTATGGAGG
1 AGAAAAACAATTTATGGTGACTACCCGCCAAAAAGTATGGAGG
2206664 AG
1 AG
2206666 CCATGTCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (43 bp):
AGAAAAACAATTTATGGTGACTACCCGCCAAAAAGTATGGAGG
Found at i:2207308 original size:29 final size:29
Alignment explanation
Indices: 2207276--2207341 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
2207266 ATATATTTAG
* *
2207276 AATTTAGTCTATCAATTTTTATTTTTAAA
1 AATTTAGTCCATCAACTTTTATTTTTAAA
* * *
2207305 AATTTAGTCCCTCAACTTTTGTTTTTAAG
1 AATTTAGTCCATCAACTTTTATTTTTAAA
2207334 AATTTAGT
1 AATTTAGT
2207342 TTCTCTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.52
Consensus pattern (29 bp):
AATTTAGTCCATCAACTTTTATTTTTAAA
Found at i:2208819 original size:4 final size:4
Alignment explanation
Indices: 2208810--2208870 Score: 122
Period size: 4 Copynumber: 15.2 Consensus size: 4
2208800 CCTGTGGCCG
2208810 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
2208858 TACA TACA TACA T
1 TACA TACA TACA T
2208871 GTTTCCTTTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:2209078 original size:26 final size:26
Alignment explanation
Indices: 2209042--2209093 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2209032 TTTATGGGAA
2209042 ATGCACCCTTAAACCTTCTTGATGTT
1 ATGCACCCTTAAACCTTCTTGATGTT
2209068 ATGCACCCTTAAACCTTCTTGATGTT
1 ATGCACCCTTAAACCTTCTTGATGTT
2209094 CCTTTTCAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (26 bp):
ATGCACCCTTAAACCTTCTTGATGTT
Found at i:2212340 original size:20 final size:18
Alignment explanation
Indices: 2212302--2212342 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
2212292 AAAATAATTA
2212302 AAATATTTTTTTATATAC
1 AAATATTTTTTTATATAC
*
2212320 AAATATTTATCTTTTTATAC
1 AAATATTT-T-TTTATATAC
2212340 AAA
1 AAA
2212343 ATCAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 1 0.05
20 11 0.55
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
AAATATTTTTTTATATAC
Found at i:2219888 original size:31 final size:32
Alignment explanation
Indices: 2219818--2219888 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
2219808 ATAATAAGAT
2219818 AGTTATTAAATTATTTAAAAGTTTTTATTTAA
1 AGTTATTAAATTATTTAAAAGTTTTTATTTAA
* *
2219850 AG-CATTAAATTATTTTAATA-TTTTTATTT-A
1 AGTTATTAAATTA-TTTAAAAGTTTTTATTTAA
2219880 AGTTATTAA
1 AGTTATTAA
2219889 GATTTAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 3 0.09
31 23 0.68
32 8 0.24
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (32 bp):
AGTTATTAAATTATTTAAAAGTTTTTATTTAA
Found at i:2239317 original size:26 final size:24
Alignment explanation
Indices: 2239280--2239340 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 24
2239270 ATTTATTGAT
*
2239280 TTAAGTTTAAATAAAACAATAATA
1 TTAATTTTAAATAAAACAATAATA
* * *
2239304 TTACATATTTAAATAAGATAATATTA
1 TTA-AT-TTTAAATAAAACAATAATA
2239330 TTAATTTTAAA
1 TTAATTTTAAA
2239341 GAAATTCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 9 0.29
25 3 0.10
26 19 0.61
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (24 bp):
TTAATTTTAAATAAAACAATAATA
Found at i:2243722 original size:4 final size:4
Alignment explanation
Indices: 2243713--2243767 Score: 62
Period size: 4 Copynumber: 14.5 Consensus size: 4
2243703 CTTTTTACAA
* * *
2243713 ATTT ATTT ATTT ATTT GTTC ATTT ATCT ATTT ATTT ATTT A-TT -TTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
2243759 ATTT -TTT AT
1 ATTT ATTT AT
2243768 ATTGTTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 7 0.17
4 35 0.83
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:2248145 original size:29 final size:28
Alignment explanation
Indices: 2248106--2248187 Score: 114
Period size: 29 Copynumber: 3.0 Consensus size: 28
2248096 CACTTTGTGC
2248106 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
2248135 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
2248163 GATACT-G-GTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
2248188 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 17 0.35
27 1 0.02
28 13 0.27
29 18 0.37
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:2248159 original size:23 final size:22
Alignment explanation
Indices: 2248133--2248224 Score: 62
Period size: 23 Copynumber: 3.9 Consensus size: 22
2248123 GATGGATTAT
2248133 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTT-GGAGG
2248156 ATTATATGATACTGGTGT-TTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGAGG
* *
2248182 ATTATACTGGTGTGTTTTGGTTGG
1 ATTATTCTGGTGTG-TTTGG-AGG
* *
2248206 A-CATTTTGGTGTGTTTGGA
1 ATTATTCTGGTGTGTTTGGA
2248225 TGGAATCCGT
Statistics
Matches: 55, Mismatches: 6, Indels: 18
0.70 0.08 0.23
Matches are distributed among these distances:
21 7 0.13
22 5 0.09
23 15 0.27
24 7 0.13
25 4 0.07
26 6 0.11
27 4 0.07
28 7 0.13
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (22 bp):
ATTATTCTGGTGTGTTTGGAGG
Found at i:2248159 original size:28 final size:27
Alignment explanation
Indices: 2248106--2248187 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 27
2248096 CACTTTGTGC
2248106 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTG-TTTGGA-GGATTATAT
2248135 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTT-GGAGGATTATAT
* *
2248163 GATACTGGTGT-TTTGGAGGATTATA
1 TATTCTGGTGTGTTTGGAGGATTATA
2248188 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
26 11 0.22
27 3 0.06
28 21 0.42
29 15 0.30
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (27 bp):
TATTCTGGTGTGTTTGGAGGATTATAT
Found at i:2249457 original size:29 final size:27
Alignment explanation
Indices: 2249409--2249473 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
2249399 ATCCAACCCA
* *
2249409 AACACACCCGGAATATTATAAATCCTCCAT
1 AACACA-CCGGAATA--ATATATCCTCCAC
* *
2249439 AACACACCGGTATAATATATCCTCCCC
1 AACACACCGGAATAATATATCCTCCAC
2249466 AACACACC
1 AACACACC
2249474 AATAATGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 18 0.58
29 7 0.23
30 6 0.19
ACGTcount: A:0.38, C:0.35, G:0.06, T:0.20
Consensus pattern (27 bp):
AACACACCGGAATAATATATCCTCCAC
Found at i:2250543 original size:12 final size:12
Alignment explanation
Indices: 2250528--2250558 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
2250518 TTCTCTTTTA
2250528 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
2250540 TTTTTCTTTCTC
1 TTTTTCTTTCCC
2250552 TTTTTCT
1 TTTTTCT
2250559 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:2250659 original size:16 final size:16
Alignment explanation
Indices: 2250638--2250668 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2250628 TTTATTATTT
2250638 TATTAACATAATATAA
1 TATTAACATAATATAA
*
2250654 TATTAATATAATATA
1 TATTAACATAATATA
2250669 TTAAAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:2258863 original size:8 final size:8
Alignment explanation
Indices: 2258850--2258878 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
2258840 TTATGTTTAG
2258850 TATATTAT
1 TATATTAT
2258858 TATATTAT
1 TATATTAT
2258866 TATATTAT
1 TATATTAT
2258874 TATAT
1 TATAT
2258879 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:2260543 original size:45 final size:45
Alignment explanation
Indices: 2260479--2260627 Score: 228
Period size: 45 Copynumber: 3.3 Consensus size: 45
2260469 CTGTTACCGC
* *
2260479 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
2260524 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTAT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
2260569 TACTATTACCGTTACCGATTCGGCACTTTGTGTGTTGGATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
2260614 TACTG-TACTGTTAC
1 TACTGTTACCGTTAC
2260628 TGTTACTGTT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 8 0.08
45 87 0.92
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:2260630 original size:6 final size:6
Alignment explanation
Indices: 2260611--2260643 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
2260601 TGTTGGATAT
2260611 TGTTAC TG-TAC TGTTAC TGTTAC TGTTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTT
2260644 CCGGATTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.52
Consensus pattern (6 bp):
TGTTAC
Found at i:2260839 original size:18 final size:18
Alignment explanation
Indices: 2260818--2261009 Score: 160
Period size: 18 Copynumber: 10.7 Consensus size: 18
2260808 TAACTGATTA
2260818 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
2260836 TTACCGGATAATTGATTG
1 TTACTGAATAATTGACTG
* *
2260854 CTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* *
2260872 TTACTGAATAATTGAATA
1 TTACTGAATAATTGACTG
*
2260890 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
*
2260908 TTACTGAATAATTGATTG
1 TTACTGAATAATTGACTG
*
2260926 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* * * *
2260944 TTACTAAATAACGTAATTG
1 TTACTGAATAA-TTGACTG
*
2260963 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
2260980 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
2260998 TTACTGGATAAT
1 TTACTGAATAAT
2261010 CGATCAATTG
Statistics
Matches: 141, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
17 19 0.13
18 104 0.74
19 18 0.13
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:2260882 original size:54 final size:52
Alignment explanation
Indices: 2260818--2261009 Score: 188
Period size: 54 Copynumber: 3.6 Consensus size: 52
2260808 TAACTGATTA
* * * *
2260818 TTACTGAATAATTGACTGTTACCGGATAATTGATTGCTACTGGATATTAGACTG
1 TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATT-GA-TG
* * **
2260872 TTACTGAATAATTGAATATTACTGAATAATTGATCATTACTGAATAATTGATTG
1 TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAAT-ATTGA-TG
* * * * *
2260926 TCACTGAATGAA-TGACTGTTACTAAATAACGTAATTGTTACTGAATATCTGATT
1 TTACTGAAT-AATTGACTGTTACTGAATAA-TTGATTGTTACTGAATAT-TGATG
*
2260980 TTACTGAATAATTGACTGTTACTGGATAAT
1 TTACTGAATAATTGACTGTTACTGAATAAT
2261010 CGATCAATTG
Statistics
Matches: 111, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
53 2 0.02
54 89 0.80
55 20 0.18
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (52 bp):
TTACTGAATAATTGACTGTTACTGAATAATTGATTGTTACTGAATATTGATG
Found at i:2260923 original size:72 final size:69
Alignment explanation
Indices: 2260805--2261009 Score: 191
Period size: 72 Copynumber: 2.9 Consensus size: 69
2260795 TAAAGGTATA
* * * * *
2260805 AAATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATAATTGATTGCTACTGGATATTAGA
1 AAATAA-TGAATATTACTGAATAATTGATC-ATTACTGAATAATTGATTG-TACTGGATAAT-GA
2260869 CTGTTACT
62 CTGTTACT
* *
2260877 GAATAATTGAATATTACTGAATAATTGATCATTACTGAATAATTGATTGTCACTGAATGAATGAC
1 AAATAA-TGAATATTACTGAATAATTGATCATTACTGAATAATTGATTGT-ACTGGAT-AATGAC
2260942 TGTTACT
63 TGTTACT
* * * *
2260949 AAATAACGTAATTGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACTGTTACTGGATAAT
1 AAATAATG-AA-TATTACTGAATAAT-TGATCATTACTGAATAATTGATTG-TACTGGATAAT
2261010 CGATCAATTG
Statistics
Matches: 112, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
71 5 0.04
72 89 0.79
73 18 0.16
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.38
Consensus pattern (69 bp):
AAATAATGAATATTACTGAATAATTGATCATTACTGAATAATTGATTGTACTGGATAATGACTGT
TACT
Found at i:2263642 original size:53 final size:53
Alignment explanation
Indices: 2263561--2263716 Score: 210
Period size: 53 Copynumber: 3.0 Consensus size: 53
2263551 GACGAAAAAT
*
2263561 ATGTGATAAGTGTG-C-CCG-ATTAAGACCATATCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTA-TAAGACCATATCTGGGCTATGGCATCGGTACA
* *
2263613 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
* * * *
2263666 ATGTGATAATGTGATTCCGTATAAGACCATGTCTGGGATATGGCTTCGGTA
1 ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTA
2263717 TGATATGTGA
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
51 4 0.04
52 10 0.11
53 78 0.84
54 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATATCTGGGCTATGGCATCGGTACA
Found at i:2277111 original size:29 final size:29
Alignment explanation
Indices: 2277079--2277136 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
2277069 GTGATTTGTG
* *
2277079 AAAATTAAATCAAATCAAAATTTATGTAT
1 AAAATCAAATAAAATCAAAATTTATGTAT
* * *
2277108 AAAATCATATAAAATTAAAGTTTATGTAT
1 AAAATCAAATAAAATCAAAATTTATGTAT
2277137 TGTATAACAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (29 bp):
AAAATCAAATAAAATCAAAATTTATGTAT
Found at i:2285306 original size:132 final size:131
Alignment explanation
Indices: 2285062--2285452 Score: 499
Period size: 132 Copynumber: 3.0 Consensus size: 131
2285052 ATTATTTATT
* *
2285062 TAAAAATTTTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGAGGAATCGTGCCCTAACGT
1 TAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTAACGT
* * *
2285127 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATTGAATGTCCCTTTAAAATTTCATTCATATTT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCATTC-TATTT
2285192 TC
130 TC
* * ** *
2285194 TAAAAATTCTTTAAAACGAAGGCGATGTTCGATATTTGGAAATTCGCCGAATCGTGCCCTAACAT
1 TAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTAACGT
* *
2285259 GCTGGGTTACAATTTCTCGTTTGCTCAAAATAATCGAATATCTCTTTAGAA--T--TTC-A--TT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCATTCTATTTT
2285317 C
131 C
* * * * * *
2285318 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTGCCCTATCGT
1 TAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTAACGT
* * * * * *
2285383 GTTGGGTTGCAATCTCTCGTTTGTTCAAAATAATCGAATATCCCTTTTGAATTTCACTCGTGTTT
66 GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCATTC-TATTT
2285448 TC
130 TC
2285450 TAA
1 TAA
2285453 GGCGAGGCAA
Statistics
Matches: 221, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
124 103 0.47
126 2 0.01
128 5 0.02
130 1 0.00
132 110 0.50
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (131 bp):
TAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTGCCCTAACGT
GCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCATTCTATTTT
C
Found at i:2285389 original size:124 final size:124
Alignment explanation
Indices: 2285055--2285438 Score: 484
Period size: 124 Copynumber: 3.0 Consensus size: 124
2285045 TTTTATAATT
* *
2285055 ATTT-ATT-TAAAAATTTTTTAAAACGAAGGCAATATTCGATATTTGGCAATTCGAGGAATCGTG
1 ATTTCATTCTAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTG
* * *
2285118 CCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATTGAATGTCCCTTTAAA
66 CCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGA
* * **
2285177 ATTTCATTCATATTTTCTAAAAATTCTTTAAAACGAAGGCGATGTTCGATATTTGGAAATTCGCC
1 A--T--TTC--A--TTCTAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAG
* * *
2285242 GAATCGTGCCCTAACATGCTGGGTTACAATTTCTCGTTTGCTCAAAATAATCGAATATCTCTTTA
58 GAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTA
2285307 GA
123 GA
* * * * *
2285309 ATTTCATTCTAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTG
1 ATTTCATTCTAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTG
* * * * *
2285374 CCCTATCGTGTTGGGTTGCAATCTCTCGTTTGTTCAAAATAATCGAATATCCCTTTTGA
66 CCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGA
2285433 ATTTCA
1 ATTTCA
2285439 CTCGTGTTTT
Statistics
Matches: 224, Mismatches: 28, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
122 1 0.00
124 109 0.49
126 3 0.01
128 3 0.01
129 1 0.00
130 1 0.00
131 2 0.01
132 104 0.46
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (124 bp):
ATTTCATTCTAAAAATTCTTTAAAACGAAGGCAATGTTCGATATTTGGCAATTCGAGGAATCGTG
CCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGA
Found at i:2288872 original size:78 final size:78
Alignment explanation
Indices: 2288782--2288946 Score: 240
Period size: 78 Copynumber: 2.1 Consensus size: 78
2288772 AAGGAATAAA
* * * * *
2288782 ATAAATTTATTAAAAAGATACCGTATAACCGTTATATTTCATAGTCTATTCATGTAAATCATATA
1 ATAAATTTATTAAAAAGACACAGTATAACAGTTATATTTCATAGTCTATTCATGGAAATCATACA
*
2288847 TGTCACATTTGAT
66 TGTCACAATTGAT
** *
2288860 ATAAATTTATTAAATGGACACAGTTTAACAGTTATATTTCATAGTCTATTCATGGAAATCATACA
1 ATAAATTTATTAAAAAGACACAGTATAACAGTTATATTTCATAGTCTATTCATGGAAATCATACA
2288925 TGTCACAATTGAT
66 TGTCACAATTGAT
*
2288938 ATGAATTTA
1 ATAAATTTA
2288947 AAAATTTTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (78 bp):
ATAAATTTATTAAAAAGACACAGTATAACAGTTATATTTCATAGTCTATTCATGGAAATCATACA
TGTCACAATTGAT
Found at i:2290419 original size:13 final size:14
Alignment explanation
Indices: 2290403--2290444 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
2290393 TTTCAATTTT
2290403 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
2290416 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
2290431 ATTTTACATAATAT
1 ATTTTA-ATAATAT
2290445 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 9 0.38
16 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:2291551 original size:104 final size:104
Alignment explanation
Indices: 2291371--2291576 Score: 304
Period size: 104 Copynumber: 2.0 Consensus size: 104
2291361 AAGAATAGGA
* * * *
2291371 GTTACAAAGCTAGCAACTAATGAGAATACAAATCGATATTTTTTAGTTACAAAGGCGCTAATGAT
1 GTTACAAAGCTAACAACTAATGAGAATAAAAATCGATATTTTTTAGTTACAAAGGCACTAACGAT
*
2291436 TCTTTTTATTATGAAAGGATATTGTAGGTGATGGTGAGG
66 TCTTTTTATTATGAAAGGATATTGTAGATGATGGTGAGG
* * * * *
2291475 GTTACAAAGCTAACAACTGATGAGAATAAAAATTGATATTTTTTAGTTATAAAGGCATTAACGGT
1 GTTACAAAGCTAACAACTAATGAGAATAAAAATCGATATTTTTTAGTTACAAAGGCACTAACGAT
* *
2291540 TCTTTTTATTATGAAAGGATTTTGTAGATTATGGTGA
66 TCTTTTTATTATGAAAGGATATTGTAGATGATGGTGA
2291577 ATAATGAATA
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 90 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.36
Consensus pattern (104 bp):
GTTACAAAGCTAACAACTAATGAGAATAAAAATCGATATTTTTTAGTTACAAAGGCACTAACGAT
TCTTTTTATTATGAAAGGATATTGTAGATGATGGTGAGG
Found at i:2301880 original size:21 final size:21
Alignment explanation
Indices: 2301845--2301885 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2301835 TAAAAAAAAC
*
2301845 TAAATTTAAATTATAAATTTTT
1 TAAATTTAAAATAT-AATTTTT
2301867 TAAA-TTAAAATATAATTTT
1 TAAATTTAAAATATAATTTT
2301886 ATGGTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATTTAAAATATAATTTTT
Found at i:2313361 original size:22 final size:24
Alignment explanation
Indices: 2313318--2313363 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2313308 TTCGTCGATT
*
2313318 TCAATTTTATATTTTTGGATTTAA
1 TCAATTTTATATTTTTGAATTTAA
2313342 TCAATTTTA-ATTTTT-AATTTAA
1 TCAATTTTATATTTTTGAATTTAA
2313364 AATTTCAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.29
23 6 0.29
24 9 0.43
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (24 bp):
TCAATTTTATATTTTTGAATTTAA
Found at i:2314180 original size:16 final size:16
Alignment explanation
Indices: 2314159--2314191 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2314149 AATAATTAAT
2314159 TATTATTTTAAAATAA
1 TATTATTTTAAAATAA
*
2314175 TATTATTTTAAATTAA
1 TATTATTTTAAAATAA
2314191 T
1 T
2314192 TACATAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTTTAAAATAA
Found at i:2314229 original size:29 final size:27
Alignment explanation
Indices: 2314154--2314228 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 27
2314144 AATATAATAA
* *
2314154 TTAATTATTATTTTAAAATAATATTATT
1 TTAATTATTA-CTTAAAATAATATTACT
*
2314182 TTAAATTAATTACATAAAAGTTAA-ATTACT
1 TT-AATT-ATTACTTAAAA--TAATATTACT
2314212 TTAATTATTACTTAAAA
1 TTAATTATTACTTAAAA
2314229 ATTTTATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
28 12 0.31
29 13 0.33
30 11 0.28
31 3 0.08
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (27 bp):
TTAATTATTACTTAAAATAATATTACT
Found at i:2314294 original size:42 final size:41
Alignment explanation
Indices: 2314232--2314310 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
2314222 CTTAAAAATT
* * *
2314232 TTATATTATAATATTTAAAATAATAAAATAATATATTTTTTAA
1 TTATATTACAATAATTAAAATAAAAAAAT-AT-TATTTTTTAA
2314275 TTATATT-CAATAATTAAAATAAAAAAATATTATTTT
1 TTATATTACAATAATTAAAATAAAAAAATATTATTTT
2314311 ACTTCCATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 6 0.18
41 2 0.06
42 18 0.55
43 7 0.21
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (41 bp):
TTATATTACAATAATTAAAATAAAAAAATATTATTTTTTAA
Found at i:2320561 original size:47 final size:47
Alignment explanation
Indices: 2320507--2320751 Score: 436
Period size: 47 Copynumber: 5.2 Consensus size: 47
2320497 GTTGTAGATG
*
2320507 TAGGACTCTTAATAAAAGTTGTTTTATTATTTTTAGGAGAAGTTAGA
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
*
2320554 TAGGACTCTTAATAAAAGTTGTTTTATTATTTTTAGGAGAAGTTAGA
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
*
2320601 TAGGAATCTTAATAAAAGTTTTTTTTATTATTTTTAGGAGAAGTTAGA
1 TAGGACTCTTAATAAAAG-TTTTTTTATTATTTTTAGGAGAAGTTAGA
2320649 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
* *
2320696 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTCGGAGAAGTTAGG
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
2320743 TAGGACTCT
1 TAGGACTCT
2320752 CATGATAAAA
Statistics
Matches: 192, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 147 0.77
48 45 0.23
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (47 bp):
TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGA
Found at i:2320644 original size:95 final size:94
Alignment explanation
Indices: 2320507--2320751 Score: 436
Period size: 95 Copynumber: 2.6 Consensus size: 94
2320497 GTTGTAGATG
*
2320507 TAGGACTCTTAATAAAAGTTGTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCTTAATAAAAG
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCTTAATAAAAG
2320572 TTGTTTTATTATTTTTAGGAGAAGTTAGA
66 TTGTTTTATTATTTTTAGGAGAAGTTAGA
*
2320601 TAGGAATCTTAATAAAAGTTTTTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCTTAATAAAA
1 TAGGACTCTTAATAAAAG-TTTTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCTTAATAAAA
*
2320666 GTTTTTTTATTATTTTTAGGAGAAGTTAGA
65 GTTGTTTTATTATTTTTAGGAGAAGTTAGA
* *
2320696 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTCGGAGAAGTTAGGTAGGACTCT
1 TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCT
2320752 CATGATAAAA
Statistics
Matches: 144, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
94 53 0.37
95 91 0.63
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (94 bp):
TAGGACTCTTAATAAAAGTTTTTTTATTATTTTTAGGAGAAGTTAGATAGGACTCTTAATAAAAG
TTGTTTTATTATTTTTAGGAGAAGTTAGA
Found at i:2333945 original size:20 final size:20
Alignment explanation
Indices: 2333900--2333939 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
2333890 TGACCCCTTC
2333900 AACAAACTCGATTGATATTG
1 AACAAACTCGATTGATATTG
2333920 AACAAACTCGATTGATATTG
1 AACAAACTCGATTGATATTG
2333940 TTCAAAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
AACAAACTCGATTGATATTG
Found at i:2359636 original size:11 final size:11
Alignment explanation
Indices: 2359620--2359650 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
2359610 AAGTATGGGT
2359620 AGGTATGGGAA
1 AGGTATGGGAA
*
2359631 AGGTATGGGCA
1 AGGTATGGGAA
2359642 AGGTATGGG
1 AGGTATGGG
2359651 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:2363756 original size:36 final size:36
Alignment explanation
Indices: 2363704--2363792 Score: 169
Period size: 36 Copynumber: 2.5 Consensus size: 36
2363694 CCCAACTACT
*
2363704 GTATACGTGAACAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
2363740 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
2363776 GTATACGTGAATAGTAC
1 GTATACGTGAATAGTAC
2363793 CGTAAACGGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACTGTATACGTGAATAGTGCC
Found at i:2363795 original size:18 final size:18
Alignment explanation
Indices: 2363704--2363796 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
2363694 CCCAACTACT
* *
2363704 GTATACGTGAACAGTACT
1 GTATACGTGAATAGTACC
*
2363722 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
2363740 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
2363758 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
2363776 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
2363794 GTA
1 GTA
2363797 AACGGTCGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:2364359 original size:11 final size:11
Alignment explanation
Indices: 2364343--2364373 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
2364333 AAGTATGGGT
2364343 AGGTATGGGAA
1 AGGTATGGGAA
*
2364354 AGGTATGGGCA
1 AGGTATGGGAA
2364365 AGGTATGGG
1 AGGTATGGG
2364374 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:2364896 original size:146 final size:146
Alignment explanation
Indices: 2364632--2364923 Score: 575
Period size: 146 Copynumber: 2.0 Consensus size: 146
2364622 GTACTACAAT
2364632 ACATTCTTGGCAATATAAAATTGTCTTAACATAGTAGAACACAGATCTGAACTCCAAGCAACCAA
1 ACATTCTTGGCAATATAAAATTGTCTTAACATAGTAGAACACAGATCTGAACTCCAAGCAACCAA
2364697 TAGCACAGTTATATACCATCTTGAAAGACTGACCCCATTTAAACTTCAATGAACGCCTATCACGG
66 TAGCACAGTTATATACCATCTTGAAAGACTGACCCCATTTAAACTTCAATGAACGCCTATCACGG
2364762 TAATTTTAAGACCCTG
131 TAATTTTAAGACCCTG
2364778 ACATTCTTGGCAATATAAAATTGTCTTAACATAGTAGAACACAGATCTGAACTCCAAGCAACCAA
1 ACATTCTTGGCAATATAAAATTGTCTTAACATAGTAGAACACAGATCTGAACTCCAAGCAACCAA
*
2364843 TAGCACAGTTATATATCATCTTGAAAGACTGACCCCATTTAAACTTCAATGAACGCCTATCACGG
66 TAGCACAGTTATATACCATCTTGAAAGACTGACCCCATTTAAACTTCAATGAACGCCTATCACGG
2364908 TAATTTTAAGACCCTG
131 TAATTTTAAGACCCTG
2364924 CTTCCTATAA
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 145 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (146 bp):
ACATTCTTGGCAATATAAAATTGTCTTAACATAGTAGAACACAGATCTGAACTCCAAGCAACCAA
TAGCACAGTTATATACCATCTTGAAAGACTGACCCCATTTAAACTTCAATGAACGCCTATCACGG
TAATTTTAAGACCCTG
Found at i:2368534 original size:13 final size:13
Alignment explanation
Indices: 2368516--2368546 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
2368506 TTTTTTACGT
2368516 TTAAATTAAATTA
1 TTAAATTAAATTA
2368529 TTAAATTAAATTA
1 TTAAATTAAATTA
2368542 TTAAA
1 TTAAA
2368547 GGTAAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAAATTAAATTA
Found at i:2371719 original size:22 final size:22
Alignment explanation
Indices: 2371694--2371745 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
2371684 CTTTTCCCTA
*
2371694 TAAAATAAACTAATTTTATTTT
1 TAAAATAAACTAATTTTATATT
*
2371716 TAAAATAAAGTAATTTTATATT
1 TAAAATAAACTAATTTTATATT
2371738 TAAAATAA
1 TAAAATAA
2371746 TACATAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAAATAAACTAATTTTATATT
Found at i:2382459 original size:25 final size:26
Alignment explanation
Indices: 2382415--2382465 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
2382405 AATATTTTAG
* *
2382415 AAAGATATAATAATATATTTTTAAAA
1 AAAGACATAATAATAAATTTTTAAAA
2382441 AAAGACAT-ATAATAAATTTTTAAAA
1 AAAGACATAATAATAAATTTTTAAAA
2382466 TTTATTGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAGACATAATAATAAATTTTTAAAA
Found at i:2382527 original size:15 final size:16
Alignment explanation
Indices: 2382497--2382530 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
2382487 TACTGTTAGT
2382497 ATATTAGATAATATTA
1 ATATTAGATAATATTA
*
2382513 ATATTTGAT-ATATTA
1 ATATTAGATAATATTA
2382528 ATA
1 ATA
2382531 ATATATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATATTAGATAATATTA
Found at i:2386050 original size:13 final size:13
Alignment explanation
Indices: 2386032--2386058 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2386022 GTTGACTGTT
2386032 TGATATGCATATA
1 TGATATGCATATA
2386045 TGATATGCATATA
1 TGATATGCATATA
2386058 T
1 T
2386059 TGTTGAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (13 bp):
TGATATGCATATA
Found at i:2389975 original size:15 final size:15
Alignment explanation
Indices: 2389955--2389983 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
2389945 TCTTTGCAAC
2389955 TTATTATAATCAATA
1 TTATTATAATCAATA
2389970 TTATTATAATCAAT
1 TTATTATAATCAAT
2389984 TAGAGCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (15 bp):
TTATTATAATCAATA
Found at i:2393461 original size:33 final size:35
Alignment explanation
Indices: 2393366--2393462 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
2393356 TTAATATTTT
*
2393366 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
2393401 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
2393434 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
2393463 ATATAACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:2393477 original size:33 final size:30
Alignment explanation
Indices: 2393401--2393481 Score: 78
Period size: 33 Copynumber: 2.7 Consensus size: 30
2393391 ATTTTTAAGC
2393401 AATA-AATATT-AATTATTTATAAAATTTA
1 AATATAATATTAAATTATTTATAAAATTTA
* * *
2393429 ATTAGAATATATAAATTATATTTTAAATATTTA
1 AATATAATAT-TAAATTAT-TTATAAA-ATTTA
2393462 AATATAACTATTAAA-TATTT
1 AATATAA-TATTAAATTATTT
2393482 GTAATTACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 3 0.07
29 5 0.12
30 1 0.02
31 8 0.19
32 9 0.21
33 14 0.33
34 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
AATATAATATTAAATTATTTATAAAATTTA
Found at i:2393973 original size:24 final size:22
Alignment explanation
Indices: 2393929--2393980 Score: 52
Period size: 26 Copynumber: 2.2 Consensus size: 22
2393919 TTTATTCAAT
2393929 TTTTAAATAAAAAATACAAAGTAA
1 TTTTAAATAAAAAATA-AAAG-AA
*
2393953 CTTTTAATATAAAGAAT-AAAGAA
1 -TTTTAA-ATAAAAAATAAAAGAA
2393976 TTTTA
1 TTTTA
2393981 TCATACTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.20
23 2 0.08
24 4 0.16
25 6 0.24
26 8 0.32
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.35
Consensus pattern (22 bp):
TTTTAAATAAAAAATAAAAGAA
Found at i:2410785 original size:126 final size:126
Alignment explanation
Indices: 2410557--2410797 Score: 401
Period size: 126 Copynumber: 1.9 Consensus size: 126
2410547 ATTTTAGCCT
* *
2410557 TAAGAGGATATTTGAATATTCAAAACAAACAAAGAAAGCGAAACTCAGTACGTTAAGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
** * *
2410622 CTTCGAATTCTTTAAATACTGAACATTGCCTTTATTTTGAAAATTTTTGAAAGTGAATTGG
66 CTTCGAATTCTTTAAATACCAAACATTGCCTTCATTTTGAAAAATTTTGAAAGTGAATTGG
* * *
2410683 TAAGAGGATATTCGAATATTCAAGACAAATAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
2410748 CTTCGAATTCTTTAAATACCAAACATTGCCTTCATTTTGAAAAATTTTGA
66 CTTCGAATTCTTTAAATACCAAACATTGCCTTCATTTTGAAAAATTTTGA
2410798 GAGAAGATCA
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
126 106 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
CTTCGAATTCTTTAAATACCAAACATTGCCTTCATTTTGAAAAATTTTGAAAGTGAATTGG
Found at i:2411282 original size:14 final size:13
Alignment explanation
Indices: 2411237--2411292 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
2411227 CTTCGCTTAA
2411237 AAATATAT-ATAT
1 AAATATATAATAT
* *
2411249 ATATATTTACATAAT
1 AAATATATA-AT-AT
2411264 AAATATATAATAGT
1 AAATATATAATA-T
*
2411278 AAATAAATAATAT
1 AAATATATAATAT
2411291 AA
1 AA
2411293 TAATATGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
12 6 0.17
13 4 0.11
14 16 0.46
15 9 0.26
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (13 bp):
AAATATATAATAT
Found at i:2411704 original size:18 final size:18
Alignment explanation
Indices: 2411681--2411753 Score: 78
Period size: 18 Copynumber: 4.0 Consensus size: 18
2411671 ATAACAAATA
2411681 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
2411699 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
2411717 ATGGT-TTAGTAGGGT-GTGG
1 -GGGTGAT-GGA-GGTAGTGG
2411736 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
2411754 ATGGTTTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.07
18 28 0.64
19 10 0.23
20 3 0.07
ACGTcount: A:0.16, C:0.00, G:0.58, T:0.26
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:2411732 original size:29 final size:29
Alignment explanation
Indices: 2411699--2411798 Score: 94
Period size: 29 Copynumber: 3.2 Consensus size: 29
2411689 GAGGTAGTGG
2411699 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGGTAGTGGATGGTTTAGTA
2411728 GGGTGTGGGGGTGATGGAGGTAGTGGATGGTTTAGTA
1 --------GGGTGATGGAGGTAGTGGATGGTTTAGTA
* *
2411765 GGGTGATGGAGTTAGTGG-TCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGAT-GGTTTAGTA
2411794 GGGTG
1 GGGTG
2411799 TTTAATTTGG
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
28 1 0.02
29 30 0.50
37 29 0.48
ACGTcount: A:0.16, C:0.01, G:0.52, T:0.31
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGATGGTTTAGTA
Found at i:2411745 original size:37 final size:37
Alignment explanation
Indices: 2411695--2411769 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
2411685 GATGGAGGTA
2411695 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
2411732 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
2411769 G
1 G
2411770 ATGGAGTTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.16, C:0.00, G:0.55, T:0.29
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
Done.