Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 73 of 356
Found at i:23030033 original size:22 final size:22
Alignment explanation
Indices: 23030007--23030053 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
23029997 ATCTTTCTAA
*
23030007 TGCCTTTATTTTGACTTCATGT
1 TGCCTTTATTCTGACTTCATGT
*
23030029 TGCCTTTATTCTGACTTTATGT
1 TGCCTTTATTCTGACTTCATGT
23030051 TGC
1 TGC
23030054 TGGTCACATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.19, G:0.15, T:0.53
Consensus pattern (22 bp):
TGCCTTTATTCTGACTTCATGT
Found at i:23030155 original size:27 final size:27
Alignment explanation
Indices: 23030119--23030177 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
23030109 GTGTTGACTA
*
23030119 TTTTT-TAATATGCATGTAGTGAGTAT
1 TTTTTATAATATGCATATAGTGAGTAT
* *
23030145 TTTTTATAATATGCATATAGTGATTGT
1 TTTTTATAATATGCATATAGTGAGTAT
23030172 TTTTTA
1 TTTTTA
23030178 GGGGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.54
Consensus pattern (27 bp):
TTTTTATAATATGCATATAGTGAGTAT
Found at i:23031364 original size:23 final size:24
Alignment explanation
Indices: 23031333--23031380 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23031323 TTCTAACATA
*
23031333 TGAGTATTGA-AAAAACAAATGTG
1 TGAGAATTGAGAAAAACAAATGTG
* *
23031356 TGAGAATTGAGAAATACATATGTG
1 TGAGAATTGAGAAAAACAAATGTG
23031380 T
1 T
23031381 TTTTTCATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (24 bp):
TGAGAATTGAGAAAAACAAATGTG
Found at i:23031646 original size:36 final size:38
Alignment explanation
Indices: 23031567--23031650 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 38
23031557 GTTAGCCATG
**
23031567 TATACCAGCAGCCATGTATAACATATGTTAAACAACAA
1 TATACCAGCAGCCATGTATAACATATCATAAACAACAA
* *
23031605 TATACCAGCAGCCATGTATACCA-A-CATAACCAACAA
1 TATACCAGCAGCCATGTATAACATATCATAAACAACAA
23031641 TATACCAGCA
1 TATACCAGCA
23031651 ACAATATTAC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 19 0.45
37 1 0.02
38 22 0.52
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (38 bp):
TATACCAGCAGCCATGTATAACATATCATAAACAACAA
Found at i:23031667 original size:36 final size:36
Alignment explanation
Indices: 23031599--23031669 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
23031589 ATATGTTAAA
* * * *
23031599 CAACAATATACCAGCAGCCATGTATACCAACATAAC
1 CAACAATATACCAGCAACAATATATACAAACATAAC
23031635 CAACAATATACCAGCAACAATAT-TACAAAACATAA
1 CAACAATATACCAGCAACAATATATAC-AAACATAA
23031670 GCTGGTTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.51, C:0.27, G:0.06, T:0.17
Consensus pattern (36 bp):
CAACAATATACCAGCAACAATATATACAAACATAAC
Found at i:23032742 original size:17 final size:18
Alignment explanation
Indices: 23032704--23032750 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
23032694 AATCACATTG
23032704 ATTTT-ATAAAATGATAAA
1 ATTTTCATAAAA-GATAAA
*
23032722 ATTTTCATAAAA-ATAAT
1 ATTTTCATAAAAGATAAA
23032739 A-TTTCATAAAAG
1 ATTTTCATAAAAG
23032751 GTGAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 10 0.38
17 5 0.19
18 5 0.19
19 6 0.23
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (18 bp):
ATTTTCATAAAAGATAAA
Found at i:23038220 original size:29 final size:27
Alignment explanation
Indices: 23038155--23038220 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 27
23038145 GCACAAATTG
* **
23038155 AAAATATAATAAAAAGTAGTTATATTA
1 AAAATAAAATAAAAAGTAAATATATTA
*
23038182 AAATTGAAAATAAAAAAGTAAATATGATTA
1 AAAAT-AAAAT-AAAAAGTAAATAT-ATTA
23038212 AAAATAAAA
1 AAAATAAAA
23038221 AATTATTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
27 4 0.13
28 4 0.13
29 15 0.48
30 8 0.26
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATAAAATAAAAAGTAAATATATTA
Found at i:23044201 original size:93 final size:93
Alignment explanation
Indices: 23044089--23044260 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23044079 CGCCCATAAG
* * *
23044089 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
23044154 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
*
23044182 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
*
23044247 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
23044261 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:23044257 original size:46 final size:46
Alignment explanation
Indices: 23044082--23044257 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
23044072 TGTAACCCGC
* *
23044082 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
23044128 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
23044178 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
23044221 CCATAAGTGAACTCGGAATCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
23044258 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:23046858 original size:34 final size:34
Alignment explanation
Indices: 23046818--23046882 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
23046808 GTATCAATAA
23046818 CATGCTTATAACAAA-TATATATAGTAGTAATTAT
1 CATGCTTATAACAAATTATA-ATAGTAGTAATTAT
23046852 CATGCTTATAACAAATTATAATAGTAGTAAT
1 CATGCTTATAACAAATTATAATAGTAGTAAT
23046883 AAACTTGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.37
Consensus pattern (34 bp):
CATGCTTATAACAAATTATAATAGTAGTAATTAT
Found at i:23046892 original size:34 final size:34
Alignment explanation
Indices: 23046816--23046893 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
23046806 TGGTATCAAT
*
23046816 AACATGCTTATAACAAATATATATAGTAGTAATT
1 AACATGCTTATAACAAATATATATAGTAGTAATA
*
23046850 ATCATGCTTATAACAAAT-TATAATAGTAGTAATA
1 AACATGCTTATAACAAATATAT-ATAGTAGTAATA
*
23046884 AACTTGCTTA
1 AACATGCTTA
23046894 ACATGTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 3 0.08
34 36 0.92
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (34 bp):
AACATGCTTATAACAAATATATATAGTAGTAATA
Found at i:23047215 original size:27 final size:28
Alignment explanation
Indices: 23047180--23047332 Score: 137
Period size: 28 Copynumber: 5.4 Consensus size: 28
23047170 AGTAGGGGAC
*
23047180 AAAACTGTAAAATCTAAAAAAT-AGGGG
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* ** *
23047207 ATAATTGTAAAATCTAAAAAATGTGGGA
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* * * *
23047235 AAAATTGTAAAATCTGAAGAATAAGTGC
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* * * *
23047263 AAAACTATAAAATCTGAAAAGTAAGGGG
1 AAAATTGTAAAATCTAAAAAATAAGGGG
* *
23047291 AAAATTGTAAAATTCTAAAAAAAATAGGAGC
1 AAAATTGTAAAA-TCTAAAAAATA-AGG-GG
23047322 AAAATTGTAAA
1 AAAATTGTAAA
23047333 TTTGTAAAAC
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
27 20 0.20
28 56 0.57
29 8 0.08
30 3 0.03
31 12 0.12
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (28 bp):
AAAATTGTAAAATCTAAAAAATAAGGGG
Found at i:23052172 original size:12 final size:12
Alignment explanation
Indices: 23052155--23052181 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23052145 TACATGGTTG
23052155 TTGACTATACCT
1 TTGACTATACCT
23052167 TTGACTATACCT
1 TTGACTATACCT
23052179 TTG
1 TTG
23052182 TTAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (12 bp):
TTGACTATACCT
Found at i:23055469 original size:40 final size:40
Alignment explanation
Indices: 23055335--23055471 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
23055325 CGGTTATTTG
* * * * *
23055335 TGGCACTTAGTGTGCGATACAATATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
*
23055375 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
* * *
23055415 TGACACTTAGTGTGTGACTT-GAGATAGCTTCGGCTATTTA
1 TGGCACTTAGTGTGTGA-TTCGACATAGCTTCGGCTATATA
* *
23055455 CGGCAATTAGTGTGTGA
1 TGGCACTTAGTGTGTGA
23055472 GATATCGAGT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
TGGCACTTAGTGTGTGATTCGACATAGCTTCGGCTATATA
Found at i:23061106 original size:62 final size:62
Alignment explanation
Indices: 23061033--23061157 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
23061023 TACTAAACGC
23061033 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
1 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
23061095 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
1 TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
23061157 T
1 T
23061158 GAATGATATG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.42
Consensus pattern (62 bp):
TATATATGTAAGTTTGTGATTCAAAATGGATGATTCAATTGATATAAATGATATTTGTGCAT
Found at i:23063664 original size:43 final size:43
Alignment explanation
Indices: 23063612--23063839 Score: 298
Period size: 43 Copynumber: 5.3 Consensus size: 43
23063602 TTTGTTGTTT
* ** *
23063612 AAGCATCGCTAAAGGTTGTGGTCTTTAGCGGCGTTTTTGGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* * *
23063655 AAGCGTCGCTAAAGGTCAGGGTCTTTAGCGGCGTTTCTCGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* *
23063698 AAGCGTCGCTAAATGTCATGGTCTTTAGCGGCGTTTTTGGGAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* *
23063741 AAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTAA
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
* ** *
23063784 AAGCGCCGCTAAAGGTCATGACCTTTAGTGGCGTTTGTGGG-A
1 AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
23063826 AAGCG-CTGCTAAAG
1 AAGCGTC-GCTAAAG
23063840 TTAGCGACGT
Statistics
Matches: 166, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
41 1 0.01
42 13 0.08
43 152 0.92
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (43 bp):
AAGCGTCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAA
Found at i:23063667 original size:85 final size:86
Alignment explanation
Indices: 23063551--23063838 Score: 246
Period size: 86 Copynumber: 3.4 Consensus size: 86
23063541 AAAGCCATGT
* * * * * * ***
23063551 TTTAGCGGCGTTTGTT--AAAAAGCGCCGCTAAAACTCATCTTCATT-GTGGCGTTTGTTGTTTA
1 TTTAGCGGCGTTT-TTGGGAAAAGCGCCGCTAAAACTCAGCGTCATTAGCGGCGTTTCTCGGAAA
**
23063613 AGCATCGCTAAAGGTTGTGGTC
65 AGCATCGCTAAAGGTCATGGTC
* ** * *
23063635 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCAGGGTCTTTAGCGGCGTTTCTCGGAAAA
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAACTCAGCGTCATTAGCGGCGTTTCTCGGAAAA
* *
23063700 GCGTCGCTAAATGTCATGGTC
66 GCATCGCTAAAGGTCATGGTC
** * *
23063721 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCATG-GTCTTTAGCGGCGTTTGT-GGTAA
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAACTCA-GCGTCATTAGCGGCGTTTCTCGG-AA
** **
23063784 AAGCGCCGCTAAAGGTCATGACC
64 AAGCATCGCTAAAGGTCATGGTC
* * *
23063807 TTTAGTGGCGTTTGTGGG-AAAGCGCTGCTAAA
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAA
23063839 GTTAGCGACG
Statistics
Matches: 172, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
83 2 0.01
84 13 0.08
85 36 0.21
86 120 0.70
87 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (86 bp):
TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAACTCAGCGTCATTAGCGGCGTTTCTCGGAAAA
GCATCGCTAAAGGTCATGGTC
Found at i:23066867 original size:30 final size:32
Alignment explanation
Indices: 23066826--23066893 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
23066816 TTGATTTTTT
23066826 AAATT-TTTTT-AAAAATTAA-AAAA-ATATAA
1 AAATTATTTTTAAAAAATTAAGAAAACAT-TAA
23066855 AAATTATTTTTAAAAAATTAAGAAAACATTAA
1 AAATTATTTTTAAAAAATTAAGAAAACATTAA
23066887 AATATTA
1 AA-ATTA
23066894 AAGAAGTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 5 0.15
30 5 0.15
31 9 0.26
32 9 0.26
33 6 0.18
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (32 bp):
AAATTATTTTTAAAAAATTAAGAAAACATTAA
Found at i:23070017 original size:7 final size:7
Alignment explanation
Indices: 23070005--23070035 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
23069995 TTAAACTCTT
23070005 TTATTTA
1 TTATTTA
23070012 TTATTTA
1 TTATTTA
23070019 TTATTTA
1 TTATTTA
23070026 TTAATTTA
1 TT-ATTTA
23070034 TT
1 TT
23070036 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTATTTA
Found at i:23070188 original size:21 final size:21
Alignment explanation
Indices: 23070151--23070190 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23070141 ATCTCAGCGT
*
23070151 TATAATACTCGATCTCACTAC
1 TATAATACTCGAACTCACTAC
23070172 TATAATAACTC-AACTCACT
1 TATAAT-ACTCGAACTCACT
23070191 CCCATAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.33
Consensus pattern (21 bp):
TATAATACTCGAACTCACTAC
Found at i:23073393 original size:16 final size:16
Alignment explanation
Indices: 23073360--23073394 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23073350 CATTGAATTG
*
23073360 TTTATTCAATCAACAA
1 TTTATTCAATAAACAA
*
23073376 TTTATTCAATAAATAA
1 TTTATTCAATAAACAA
23073392 TTT
1 TTT
23073395 TTTTTAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTATTCAATAAACAA
Found at i:23081408 original size:19 final size:18
Alignment explanation
Indices: 23081363--23081408 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
23081353 TAACTCAGTC
23081363 AATAATTTTATAATTTTT
1 AATAATTTTATAATTTTT
* *
23081381 ATTTTATTTTATAACTTTTT
1 A-ATAATTTTATAA-TTTTT
23081401 AATAATTT
1 AATAATTT
23081409 ATTTAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 1 0.05
19 15 0.68
20 6 0.27
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
AATAATTTTATAATTTTT
Found at i:23099583 original size:36 final size:36
Alignment explanation
Indices: 23099543--23099612 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
23099533 ATCATTTAAT
* *
23099543 CCAAACTTAATCTCCTAACTTCTAACAAGTAATCTG
1 CCAAACTCAATCTCCTAACTTCTAACAAGAAATCTG
* *
23099579 CCAAACTCAATCTCCTATCTTCTCACAAGAAATC
1 CCAAACTCAATCTCCTAACTTCTAACAAGAAATC
23099613 GACTAATCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.36, C:0.31, G:0.04, T:0.29
Consensus pattern (36 bp):
CCAAACTCAATCTCCTAACTTCTAACAAGAAATCTG
Found at i:23107534 original size:18 final size:18
Alignment explanation
Indices: 23107507--23107559 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
23107497 TGTTAATATA
*
23107507 GGAGTAAATCCCTGATTG
1 GGAGTAAATCCTTGATTG
*
23107525 GGAGTCAATCCTTGATTG
1 GGAGTAAATCCTTGATTG
23107543 GGAGTAAATCCTTGATT
1 GGAGTAAATCCTTGATT
23107560 AGGATTTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (18 bp):
GGAGTAAATCCTTGATTG
Found at i:23113313 original size:20 final size:20
Alignment explanation
Indices: 23113290--23113337 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
23113280 AAATCCAAAT
23113290 TAAAATACTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
*
23113310 TAAAATCCTGAAATTCAGGA
1 TAAAATACTGAAATTCAGGA
23113330 TAAGAATA
1 TAA-AATA
23113338 TTGATGTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (20 bp):
TAAAATACTGAAATTCAGGA
Found at i:23117448 original size:9 final size:9
Alignment explanation
Indices: 23117430--23117475 Score: 58
Period size: 9 Copynumber: 5.2 Consensus size: 9
23117420 GAATGTAAGT
23117430 TAAATAAAA
1 TAAATAAAA
*
23117439 TAATTAAAA
1 TAAATAAAA
23117448 TAAATAAAA
1 TAAATAAAA
*
23117457 TAAA-ATAA
1 TAAATAAAA
*
23117465 TAAATCAAA
1 TAAATAAAA
23117474 TA
1 TA
23117476 TTAGAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAATAAAA
Found at i:23117733 original size:39 final size:39
Alignment explanation
Indices: 23117689--23117767 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
23117679 GAAACTTAAG
*
23117689 AGAAATTTTTAAAAAGAAAAACCCAGATAGAATTTATTA
1 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
23117728 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
1 AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
23117767 A
1 A
23117768 CTCAAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.27
Consensus pattern (39 bp):
AGAAATTCTTAAAAAGAAAAACCCAGATAGAATTTATTA
Found at i:23117985 original size:14 final size:14
Alignment explanation
Indices: 23117966--23117992 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23117956 AAAAAAATGG
23117966 AATAAAATAATAAT
1 AATAAAATAATAAT
23117980 AATAAAATAATAA
1 AATAAAATAATAA
23117993 GATTTGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:23131584 original size:10 final size:9
Alignment explanation
Indices: 23131564--23131612 Score: 62
Period size: 10 Copynumber: 5.1 Consensus size: 9
23131554 GTGACCCCTA
23131564 TTTTCAAAT
1 TTTTCAAAT
23131573 TTTTCAAAAT
1 TTTTC-AAAT
23131583 TTTCTCAAAT
1 TTT-TCAAAT
23131593 TTTTCAAAT
1 TTTTCAAAT
*
23131602 TGTTTTAAAT
1 T-TTTCAAAT
23131612 T
1 T
23131613 AGTCCCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 12 0.33
10 22 0.61
11 2 0.06
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (9 bp):
TTTTCAAAT
Found at i:23135222 original size:46 final size:46
Alignment explanation
Indices: 23135155--23135459 Score: 387
Period size: 46 Copynumber: 6.6 Consensus size: 46
23135145 TGATGTCATA
* * * *
23135155 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCACGTTGCCATG
* * * ** *
23135201 GTATCTTTCAACCATAGTTTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGTTGCCATG
** *
23135248 GTATCTTTCAACCATTTTCTTACTCATTTCATGTCAAGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * *
23135294 GCATCTTTCAACCATGGTCTTATTCATTTCATTTCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* *
23135340 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
* * *
23135386 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
*
23135432 GTATCTTTCAACCATGGTCTTACACATT
1 GTATCTTTCAACCATGGTCTTACTCATT
23135460 CCATATAAGA
Statistics
Matches: 234, Mismatches: 23, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
46 198 0.85
47 36 0.15
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGTTGCCATG
Found at i:23147084 original size:40 final size:40
Alignment explanation
Indices: 23147010--23147191 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
23147000 AACCCAAGTA
* *
23147010 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
23147049 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
23147089 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
23147129 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
23147169 CCTTTGGGACTTAGCCCTGATAT
1 CCTTCGGGACTTAGCCCGGATAT
23147192 CATCCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 120 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:23150029 original size:26 final size:28
Alignment explanation
Indices: 23149990--23150044 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
23149980 CGACATTTCA
*
23149990 ATAAATTATTTTTTTACATAA-TTTTTT
1 ATAAATTATATTTTTACATAACTTTTTT
*
23150017 ATAAA-TATATTTTTATATAACTTTTTT
1 ATAAATTATATTTTTACATAACTTTTTT
23150044 A
1 A
23150045 ACCCAATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (28 bp):
ATAAATTATATTTTTACATAACTTTTTT
Found at i:23159239 original size:32 final size:31
Alignment explanation
Indices: 23159192--23159266 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
23159182 TATTTTAGAG
* *
23159192 AAATTAAATTAATATTTAAAAAAATAA-TTTA
1 AAATAAAATAAATATTT-AAAAAATAATTTTA
* *
23159223 ACAATAAAATAAATATTTACAGAATAATTTTA
1 A-AATAAAATAAATATTTAAAAAATAATTTTA
*
23159255 AAATAAAGTAAA
1 AAATAAAATAAA
23159267 AATTAACAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 18 0.49
32 19 0.51
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (31 bp):
AAATAAAATAAATATTTAAAAAATAATTTTA
Found at i:23159252 original size:31 final size:31
Alignment explanation
Indices: 23159213--23159289 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
23159203 ATATTTAAAA
* *
23159213 AAATAATTTAACAATAAAATAAATATTTACAG
1 AAATAATTTAA-AATAAAATAAAAATTAACAG
*
23159245 -AATAATTTTAAAATAAAGTAAAAATTAACAG
1 AAATAA-TTTAAAATAAAATAAAAATTAACAG
*
23159276 AAAAAATTTAAAAT
1 AAATAATTTAAAAT
23159290 TGTTGCGATC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
31 30 0.77
32 9 0.23
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (31 bp):
AAATAATTTAAAATAAAATAAAAATTAACAG
Found at i:23161617 original size:5 final size:5
Alignment explanation
Indices: 23161609--23161665 Score: 60
Period size: 5 Copynumber: 10.6 Consensus size: 5
23161599 CTTTTTTTTT
* *
23161609 TTTCA TTTCA TTCCAA TTTCA TTTTAA TTTCA TTTCA TTTACA TTTACA
1 TTTCA TTTCA TTTC-A TTTCA -TTTCA TTTCA TTTCA TTT-CA TTT-CA
23161658 TTTCA TTT
1 TTTCA TTT
23161666 AAATTATCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
5 26 0.58
6 19 0.42
ACGTcount: A:0.25, C:0.18, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTCA
Found at i:23161633 original size:22 final size:22
Alignment explanation
Indices: 23161608--23161664 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
23161598 TCTTTTTTTT
23161608 TTTTCATTTCATTCCAATTT-CA
1 TTTTCATTTCATTCC-ATTTACA
* *
23161630 TTTTAATTTCATTTCATTTACA
1 TTTTCATTTCATTCCATTTACA
*
23161652 TTTACATTTCATT
1 TTTTCATTTCATT
23161665 TAAATTATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.25, C:0.18, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTCATTTCATTCCATTTACA
Found at i:23161809 original size:11 final size:11
Alignment explanation
Indices: 23161793--23161832 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
23161783 TAATCATCAT
*
23161793 TTCATTTTATA
1 TTCATTTAATA
23161804 TTCATTTAATA
1 TTCATTTAATA
23161815 TTTCATTTAAT-
1 -TTCATTTAATA
23161826 TTCATTT
1 TTCATTT
23161833 TCATTACAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 7 0.26
11 10 0.37
12 10 0.37
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (11 bp):
TTCATTTAATA
Found at i:23161821 original size:12 final size:12
Alignment explanation
Indices: 23161791--23161825 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
23161781 CATAATCATC
*
23161791 ATTTCATTTTAT
1 ATTTCATTTAAT
23161803 A-TTCATTTAAT
1 ATTTCATTTAAT
23161814 ATTTCATTTAAT
1 ATTTCATTTAAT
23161826 TTCATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTTCATTTAAT
Found at i:23161881 original size:30 final size:28
Alignment explanation
Indices: 23161843--23161926 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 28
23161833 TCATTACAAA
23161843 TTACATTTTGTTTCATATTTATTTTTCAT
1 TTACATTTT-TTTCATATTTATTTTTCAT
*
23161872 TTAGCATTTTATTTCATTAATT-TTTTTCAT
1 TTA-CATTTT-TTTCA-TATTTATTTTTCAT
*
23161902 TTAAATTTTTTT-ATATTTTATTTTT
1 TTACATTTTTTTCATA-TTTATTTTT
23161927 GTCAATTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 8 0.17
29 8 0.17
30 22 0.47
31 4 0.09
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (28 bp):
TTACATTTTTTTCATATTTATTTTTCAT
Found at i:23161899 original size:13 final size:15
Alignment explanation
Indices: 23161864--23161941 Score: 63
Period size: 15 Copynumber: 5.1 Consensus size: 15
23161854 TTCATATTTA
*
23161864 TTTTTCATTTAGCATT
1 TTTTTCATTTA-AATT
23161880 TTATTTCA-TT-AATT
1 TT-TTTCATTTAAATT
23161894 TTTTTCATTTAAATT
1 TTTTTCATTTAAATT
**
23161909 TTTTT-ATATTTTATT
1 TTTTTCAT-TTAAATT
*
23161924 TTTGTCAATTTAAATT
1 TTTTTC-ATTTAAATT
23161940 TT
1 TT
23161942 AAATTTGTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
13 5 0.10
14 9 0.18
15 18 0.36
16 11 0.22
17 7 0.14
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTCATTTAAATT
Found at i:23162131 original size:11 final size:10
Alignment explanation
Indices: 23162113--23162168 Score: 67
Period size: 11 Copynumber: 5.2 Consensus size: 10
23162103 TCAATTTTTT
23162113 TTCCATTTCA
1 TTCCATTTCA
23162123 TTCCAATTTCA
1 TTCC-ATTTCA
23162134 TTTCCATTTCA
1 -TTCCATTTCA
*
23162145 TTTCATTTCCA
1 TTCCATTT-CA
23162156 TTCCCATTTCA
1 TT-CCATTTCA
23162167 TT
1 TT
23162169 TAAATTATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
10 11 0.28
11 20 0.50
12 9 0.22
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.52
Consensus pattern (10 bp):
TTCCATTTCA
Found at i:23162136 original size:5 final size:5
Alignment explanation
Indices: 23162116--23162169 Score: 54
Period size: 5 Copynumber: 10.0 Consensus size: 5
23162106 ATTTTTTTTC
* *
23162116 CATTT CATTC CAATTT CATTT CCATTT CATTT CATTT CCATTCC CATTT
1 CATTT CATTT C-ATTT CATTT -CATTT CATTT CATTT -CATT-T CATTT
23162165 CATTT
1 CATTT
23162170 AAATTATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 24 0.59
6 17 0.41
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.52
Consensus pattern (5 bp):
CATTT
Found at i:23162137 original size:22 final size:22
Alignment explanation
Indices: 23162112--23162168 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
23162102 ATCAATTTTT
23162112 TTTCCATTTCATTCCAATTT-CA
1 TTTCCATTTCATTCC-ATTTCCA
*
23162134 TTTCCATTTCATTTCATTTCCA
1 TTTCCATTTCATTCCATTTCCA
*
23162156 TTCCCATTTCATT
1 TTTCCATTTCATT
23162169 TAAATTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.19, C:0.28, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTCCATTTCATTCCATTTCCA
Found at i:23162195 original size:15 final size:16
Alignment explanation
Indices: 23162167--23162199 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23162157 TCCCATTTCA
23162167 TTTAAATTATATTTTT
1 TTTAAATTATATTTTT
*
23162183 TTTAATTTA-ATTTTT
1 TTTAAATTATATTTTT
23162198 TT
1 TT
23162200 CTTATTTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTAAATTATATTTTT
Found at i:23162250 original size:41 final size:41
Alignment explanation
Indices: 23162156--23162253 Score: 130
Period size: 40 Copynumber: 2.4 Consensus size: 41
23162146 TTCATTTCCA
*
23162156 TTCC-CATTTCATTTAAATTATATTTTTTTTAATTTAATTTTT
1 TTCCTCATTTCATTT--ATTATATTTTTTTTAAATTAATTTTT
*
23162198 TT-CTTATTTCATTTA-TATATTTTTATTTAAATTAATTTTT
1 TTCCTCATTTCATTTATTATATTTTT-TTTAAATTAATTTTT
23162238 TTCCTCATTTCATTTA
1 TTCCTCATTTCATTTA
23162254 AATTATCTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
39 9 0.18
40 17 0.34
41 13 0.26
42 11 0.22
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (41 bp):
TTCCTCATTTCATTTATTATATTTTTTTTAAATTAATTTTT
Found at i:23162309 original size:27 final size:27
Alignment explanation
Indices: 23162278--23162334 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
23162268 CCATGCAAAT
23162278 TTAATTTTTCTT-CTCATTTCATTTAAA
1 TTAATTTTT-TTCCTCATTTCATTTAAA
23162305 TTAATTTTTTTCCTCATTTCATTTAAA
1 TTAATTTTTTTCCTCATTTCATTTAAA
23162332 TTA
1 TTA
23162335 TCTATCTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (27 bp):
TTAATTTTTTTCCTCATTTCATTTAAA
Found at i:23162313 original size:76 final size:73
Alignment explanation
Indices: 23162222--23162393 Score: 272
Period size: 76 Copynumber: 2.3 Consensus size: 73
23162212 ATATATTTTT
23162222 ATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTATCTATCTTTCCATGCAAATTTAATTTTT
1 ATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTATCTATCTTTCCAT--AAATTTAATTTTT
*
23162287 CTTCTCATTTC
64 -TCCTCATTTC
*
23162298 ATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTATCTATCTTTCCATATATTTAATTTTTTC
1 ATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTATCTATCTTTCCATAAATTTAATTTTTTC
23162363 CTCATTTC
66 CTCATTTC
*
23162371 ATTTAAATTTATCTTTATTTCCT
1 ATTTAAATTAAT-TTT-TTTCCT
23162394 TATAAATTTA
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
73 20 0.22
74 15 0.16
75 6 0.07
76 50 0.55
ACGTcount: A:0.26, C:0.16, G:0.01, T:0.57
Consensus pattern (73 bp):
ATTTAAATTAATTTTTTTCCTCATTTCATTTAAATTATCTATCTTTCCATAAATTTAATTTTTTC
CTCATTTC
Found at i:23162329 original size:49 final size:47
Alignment explanation
Indices: 23162276--23162473 Score: 150
Period size: 46 Copynumber: 4.3 Consensus size: 47
23162266 TTCCATGCAA
*
23162276 ATTTAATTTTTCTTCTCATTTCATTTAAATTAATTTTTTTCCTCATTTC
1 ATTTAATTTATCTTCT-ATTTCATTTAAATTAA-TTTTTTCCTCATTTC
* * * *
23162325 ATTTAAATTATCTATCT-TTCCATAT-ATTTAATTTTTTCCTCATTTC
1 ATTTAATTTATCT-TCTATTTCATTTAAATTAATTTTTTCCTCATTTC
* *
23162371 ATTTAAATTTATCTT-TATTTCCTTATAAATTTAAATTTTTT-CTCAATTC
1 ATTT-AATTTATCTTCTATTTCATT-TAAA-TT-AATTTTTTCCTCATTTC
*
23162420 ATTT-ATATTAT-TT-T-TGTTCATTTCAA-T--TTTTTT-CTCATTTC
1 ATTTAAT-TTATCTTCTAT-TTCATTTAAATTAATTTTTTCCTCATTTC
*
23162461 ATTTAAATTATCT
1 ATTTAATTTATCT
23162474 ATCTTTCTAT
Statistics
Matches: 123, Mismatches: 15, Indels: 29
0.74 0.09 0.17
Matches are distributed among these distances:
41 21 0.17
42 2 0.02
44 1 0.01
45 1 0.01
46 28 0.23
47 24 0.20
48 11 0.09
49 24 0.20
50 11 0.09
ACGTcount: A:0.26, C:0.14, G:0.01, T:0.60
Consensus pattern (47 bp):
ATTTAATTTATCTTCTATTTCATTTAAATTAATTTTTTCCTCATTTC
Found at i:23162421 original size:95 final size:89
Alignment explanation
Indices: 23162276--23162504 Score: 207
Period size: 89 Copynumber: 2.5 Consensus size: 89
23162266 TTCCATGCAA
* * * *
23162276 ATTT-AATTTTTCTTCTCATTTCATTTAAA-TTAATTTTTTTCCTCATTTCATTTAAATTATCTA
1 ATTTAAATTTATCTT-T-ATTTCCTTTAAATTTAAATTTTTT-CTCAATTCATTTAAATTAT-T-
*
23162339 TCTT-TCCATATATTTAATTTTTTCCTCATTTC
61 T-TTGTCC--AT-TTCAATTTTTTCCTCATTTC
*
23162371 ATTTAAATTTATCTTTATTTCCTTATAAATTTAAATTTTTTCTCAATTCATTTATATTATTTTTG
1 ATTTAAATTTATCTTTATTTCCTT-TAAATTTAAATTTTTTCTCAATTCATTTAAATTATTTTTG
* *
23162436 TTCATTTCAATTTTTTTCTCATTTC
65 TCCATTTCAATTTTTTCCTCATTTC
* * * *
23162461 ATTTAAA-TTATCTATCTTT-CTATGTAATTTTCAATTTTTTCTCA
1 ATTTAAATTTATCTTTATTTCCT-T-TAAATTTAAATTTTTTCTCA
23162505 TACAATTTAT
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
88 2 0.02
89 29 0.25
90 25 0.22
91 2 0.02
92 2 0.02
93 3 0.03
94 8 0.07
95 26 0.22
96 19 0.16
ACGTcount: A:0.25, C:0.14, G:0.01, T:0.59
Consensus pattern (89 bp):
ATTTAAATTTATCTTTATTTCCTTTAAATTTAAATTTTTTCTCAATTCATTTAAATTATTTTTGT
CCATTTCAATTTTTTCCTCATTTC
Found at i:23162522 original size:89 final size:89
Alignment explanation
Indices: 23162350--23162523 Score: 219
Period size: 89 Copynumber: 2.0 Consensus size: 89
23162340 CTTTCCATAT
*
23162350 ATTTAATTTTTTCCTCATTTCATTTAAATTTATCTTTATTTCCTTATAAATTTAAATTTTTTCTC
1 ATTTAATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCTTATAAATTTAAATTTTTTCTC
* *
23162415 AATTCATTTATATTATTTTTGTTC
66 AATACATTTATATAATTTTTGTTC
* * * * *
23162439 ATTTCAATTTTTTTCTCATTTCATTTAAA-TTATCTATCTTT-CTATGTAATTTTCAATTTTTTC
1 ATTT-AATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCT-TATAAATTTAAATTTTTTC
*
23162502 TC-ATACAATTTATCTAATTTTT
64 TCAATAC-ATTTATATAATTTTT
23162524 CATATATTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
88 5 0.07
89 45 0.62
90 23 0.32
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (89 bp):
ATTTAATTTTTTCCTCATTTCATTTAAATTTATCTATATTTCCTTATAAATTTAAATTTTTTCTC
AATACATTTATATAATTTTTGTTC
Found at i:23165753 original size:55 final size:55
Alignment explanation
Indices: 23165671--23166070 Score: 428
Period size: 56 Copynumber: 7.1 Consensus size: 55
23165661 ACACAAAAAT
* * * * * * *
23165671 ATTTTTTTTGTATCTGGTACCGGCCATTAAAAAGCTAGCACCTAAAAAAAATTGA
1 ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTGA
* * *
23165726 ATTTTTTTCGTACATGAG-GTCGACCATTAGAAGGCCAGCACCT-AAAAAATTTGAA
1 ATTTTTTTCGTACCTG-GTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTG-A
* * * *
23165781 TATATTTTTTCGTACTTAGTGCTGGCCATTAGAAGGCCAGGACCTAAAAAAATTTGAA
1 -AT-TTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTG-A
* * *
23165839 TATTTTTTTTCGCACCTGGTGCCGGCCATTAGAAGGCTAGCACCTAACAAAATTTGA
1 -A-TTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTGA
* * * * *
23165896 ATTTTTTTTCATACCTTGTGTCGGCCATTAGAAGGCCAACACTTAAAAAAATTTGA
1 A-TTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTGA
* * * * *
23165952 ATTTTTTTTCGTACCTGGTGCCTGTCATTAAAAGGCTAGCACCTAAAAAAAATTGA
1 A-TTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTGA
* *
23166008 ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGAACCAAAAAAAAATTT-A
1 ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACC-TAAAAAAATTTGA
23166063 ATTTTTTT
1 ATTTTTTT
23166071 ACTAGTCTAT
Statistics
Matches: 289, Mismatches: 48, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
54 9 0.03
55 78 0.27
56 108 0.37
57 34 0.12
58 59 0.20
59 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (55 bp):
ATTTTTTTCGTACCTGGTGCCGGCCATTAGAAGGCCAGCACCTAAAAAAATTTGA
Found at i:23168245 original size:21 final size:21
Alignment explanation
Indices: 23168219--23168260 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23168209 GTAATTTTGT
23168219 AATTAAA-TGGAAATTAAAACA
1 AATTAAAGT-GAAATTAAAACA
23168240 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTGAAATTAAAACA
23168261 CTTTAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AATTAAAGTGAAATTAAAACA
Found at i:23169151 original size:24 final size:24
Alignment explanation
Indices: 23169098--23169163 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
23169088 TCAGCTCGAG
*
23169098 AGAGCTTACCGGTATTCAGCTCGTA
1 AGAGCTTACC-GTATTCAGCTCATA
* *
23169123 TGAGCTTACCGT-TTATAGCTCATA
1 AGAGCTTACCGTATT-CAGCTCATA
*
23169147 AGAGCATACCG-ATTCAG
1 AGAGCTTACCGTATTCAG
23169164 AGCTCGTATG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
23 4 0.12
24 20 0.61
25 9 0.27
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (24 bp):
AGAGCTTACCGTATTCAGCTCATA
Found at i:23169176 original size:25 final size:24
Alignment explanation
Indices: 23169115--23169180 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 24
23169105 ACCGGTATTC
* * *
23169115 AGCTCGTATGAGCTTACCGTTTAT
1 AGCTCGTATGAGCATACCGTTCAG
* *
23169139 AGCTCATAAGAGCATACCGATTCAG
1 AGCTCGTATGAGCATACCG-TTCAG
23169164 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
23169181 ATGTACAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 16 0.47
25 18 0.53
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AGCTCGTATGAGCATACCGTTCAG
Found at i:23170945 original size:25 final size:25
Alignment explanation
Indices: 23170917--23170995 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
23170907 TAGCTCTTAT
* *
23170917 GAGCATCCCGTTATATGGCTCTCAC
1 GAGCATCCAGATATATGGCTCTCAC
* *
23170942 GAGCTTCCAGATATTTGGCTCTCAC
1 GAGCATCCAGATATATGGCTCTCAC
* * * * *
23170967 GAGCTTTCTGATATTTGGCTCTCAT
1 GAGCATCCAGATATATGGCTCTCAC
23170992 GAGC
1 GAGC
23170996 TTCCCAATTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (25 bp):
GAGCATCCAGATATATGGCTCTCAC
Found at i:23170996 original size:25 final size:25
Alignment explanation
Indices: 23170932--23170999 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
23170922 TCCCGTTATA
23170932 TGGCTCTCACGAGCTTCCAGATATT
1 TGGCTCTCACGAGCTTCCAGATATT
* *
23170957 TGGCTCTCACGAGCTTTCTGATATT
1 TGGCTCTCACGAGCTTCCAGATATT
*
23170982 TGGCTCTCATGAGCTTCC
1 TGGCTCTCACGAGCTTCC
23171000 CAATTAATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.35
Consensus pattern (25 bp):
TGGCTCTCACGAGCTTCCAGATATT
Found at i:23175309 original size:45 final size:45
Alignment explanation
Indices: 23175212--23175322 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
23175202 CGATTACTAT
* * *
23175212 TACTGTTACCATTACTGTTACCGATTCAATACTTTGTGTGTCAAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* **
23175257 TACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
* * *
23175302 TATTGTTACTGTTACTATTAC
1 TACTGTTACCGTTACTGTTAC
23175323 TATTACCATT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACAGATTCAACACTTTGTGTGTCAAA
Found at i:23176448 original size:21 final size:21
Alignment explanation
Indices: 23176369--23176586 Score: 114
Period size: 21 Copynumber: 10.3 Consensus size: 21
23176359 CCAGAGGCTG
23176369 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
23176390 AACTAGAAGATCATAAGAGCTA
1 AAC-AGAAGCTCATAAGAGCTA
* * * * *
23176412 AACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTA
* *
23176433 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * * *
23176454 AATAGAAACTCATAAAAGTTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
23176475 AACAAAAGCTTAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * * * *
23176496 AACGGAAACTTATAAAAGTTG
1 AACAGAAGCTCATAAGAGCTA
* * *
23176517 AACAAAAGCTCAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
23176538 AA-TGAAAACTCATATGAGTTA
1 AACAG-AAGCTCATAAGAGCTA
* * *
23176559 AATAGAAGCTGAAAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
23176580 AACAGAA
1 AACAGAA
23176587 AGTAAAACAT
Statistics
Matches: 141, Mismatches: 53, Indels: 6
0.70 0.26 0.03
Matches are distributed among these distances:
21 120 0.85
22 21 0.15
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:23176501 original size:84 final size:84
Alignment explanation
Indices: 23176404--23176587 Score: 208
Period size: 84 Copynumber: 2.2 Consensus size: 84
23176394 AGAAGATCAT
** * **
23176404 AAGAGCTAAACGGAAACCCATAAGGGTTAAACAGAAGCTCGTAAGAGCTGAAT-AGAAACTCATA
1 AAGAGCTAAACGGAAACCCATAAAAGTTAAACAAAAGCTCAAAAGAGCTGAATGA-AAACTCATA
* *
23176468 AAAGTTGAACAAAAGCTTAA
65 AAAGTTAAACAAAAGCTGAA
* ** * *
23176488 AAGAGCTGAACGGAAACTTATAAAAGTTGAACAAAAGCTCAAAAGAGCTGAATGAAAACTCATAT
1 AAGAGCTAAACGGAAACCCATAAAAGTTAAACAAAAGCTCAAAAGAGCTGAATGAAAACTCATAA
* * *
23176553 GAGTTAAATAGAAGCTGAA
66 AAGTTAAACAAAAGCTGAA
*
23176572 AAGAGCTAAACAGAAA
1 AAGAGCTAAACGGAAA
23176588 GTAAAACATG
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
84 81 0.99
85 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (84 bp):
AAGAGCTAAACGGAAACCCATAAAAGTTAAACAAAAGCTCAAAAGAGCTGAATGAAAACTCATAA
AAGTTAAACAAAAGCTGAA
Found at i:23179987 original size:13 final size:14
Alignment explanation
Indices: 23179969--23179997 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23179959 TCATCATAGT
23179969 AATATTTTATA-AA
1 AATATTTTATATAA
23179982 AATATTTTATATAA
1 AATATTTTATATAA
23179996 AA
1 AA
23179998 ATGCCCTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATATTTTATATAA
Found at i:23182042 original size:35 final size:35
Alignment explanation
Indices: 23181980--23182070 Score: 125
Period size: 35 Copynumber: 2.6 Consensus size: 35
23181970 TCATATGGAA
*
23181980 ATATAATCTT-TAATGATATGCAATCTTAGATATG
1 ATATAATCTTAGAATGATATGCAATCTTAGATATG
23182014 ATATAATCTTAGATATGAT-TGCAATCTTAGATATG
1 ATATAATCTTAGA-ATGATATGCAATCTTAGATATG
23182049 ATATGCAATCTTAGAA-GATATG
1 ATAT--AATCTTAGAATGATATG
23182071 ATTTTGTAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
34 10 0.20
35 24 0.47
36 8 0.16
37 9 0.18
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (35 bp):
ATATAATCTTAGAATGATATGCAATCTTAGATATG
Found at i:23182070 original size:17 final size:19
Alignment explanation
Indices: 23181992--23182063 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
23181982 ATAATCTTTA
23181992 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23182011 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
23182028 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
23182046 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
23182064 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
16 1 0.02
17 15 0.30
18 15 0.30
19 19 0.38
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:23182089 original size:22 final size:22
Alignment explanation
Indices: 23181992--23182086 Score: 79
Period size: 19 Copynumber: 4.8 Consensus size: 22
23181982 ATAATCTTTA
23181992 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
23182011 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
23182028 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
23182046 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
23182068 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
23182087 GATTTAATTT
Statistics
Matches: 63, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
16 1 0.02
17 13 0.21
18 13 0.21
19 16 0.25
22 8 0.13
23 12 0.19
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:23183519 original size:10 final size:10
Alignment explanation
Indices: 23183502--23183532 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
23183492 TTGTAAGTAC
23183502 TTGC-TGTCA
1 TTGCATGTCA
23183511 TTGCATGTCA
1 TTGCATGTCA
23183521 TTGCATGTCA
1 TTGCATGTCA
23183531 TT
1 TT
23183533 TGGCATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (10 bp):
TTGCATGTCA
Found at i:23186348 original size:39 final size:39
Alignment explanation
Indices: 23186303--23186531 Score: 386
Period size: 39 Copynumber: 5.9 Consensus size: 39
23186293 AAGCAAGACA
23186303 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
23186342 CTGGAAATGCATCCGGGCTAAAGACCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
23186381 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
23186420 CTGGAAATGTATCTGGGCTAAAGACCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
23186459 CTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
23186498 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCT
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCT
23186532 CCGCAGGCTT
Statistics
Matches: 175, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 175 1.00
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:23196128 original size:90 final size:88
Alignment explanation
Indices: 23195972--23196166 Score: 266
Period size: 90 Copynumber: 2.2 Consensus size: 88
23195962 CGAAGAAACA
** * *
23195972 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGT
* *
23196037 TTTCACATCGAAGTAGATCCAAGAT
66 TTACAC-T-GAAGCAGATCCAAGAT
* *
23196062 GATTTGGCATCTCTGTATTAGACGGGGAGTAGATCGAAGACATAGCAGATCTAACCTTCACG-TG
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATG
*
23196126 TTTACACTGAAGCAGATCTAAGAT
65 TTTACACTGAAGCAGATCCAAGAT
*
23196150 TATTTGGCATCTCTGTA
1 GATTTGGCATCTCTGTA
23196167 CTGTCAGAGA
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
88 30 0.32
89 1 0.01
90 62 0.66
91 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (88 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGT
TTACACTGAAGCAGATCCAAGAT
Found at i:23196214 original size:221 final size:220
Alignment explanation
Indices: 23195664--23196330 Score: 962
Period size: 220 Copynumber: 3.1 Consensus size: 220
23195654 GCTAAAGCAT
* * * * * ** *
23195664 AGCAGATTTGACCTTTAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCTCTGTATTG
1 AGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
* *
23195729 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAAAGCAGATCGAAGACA
66 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
* * ***
23195794 TAACAGATCTAACCTTCGGATTTCTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCCTACG
131 TAGCAGATCTAACCTTCGGATTT-TTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
**
23195859 TT-GACAAAGAGCAGATCGAAGACAC
195 TTAGACGGAGAGCAGATCGAAGACAC
* *
23195884 AACAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
1 AGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
23195949 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
66 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
23196014 TAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
131 TAGCAGATCTAACCTTCGGAT-TTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTA
* * *
23196079 TTAGACGGGGAGTAGATCGAAGACAT
195 TTAGACGGAGAGCAGATCGAAGACAC
* * *
23196105 AGCAGATCTAACCTTCACGTGTTTACACTGAAGCAGATCTAAGATTATTTGGCATCTCTGTACTG
1 AGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
* *
23196170 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAACAGATTGAAGACA
66 TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
* * *
23196235 TAGCAGATCTGACCTTC--A----T----T-GAAGCAGATCAAAGATGATTTGGCATCTCTGTAT
131 TAGCAGATCTAACCTTCGGATTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTAT
23196289 TAGACGGAGAGCAGATCGAAGACAC
196 TAGACGGAGAGCAGATCGAAGACAC
23196314 AGCAGATCTGACCTTCA
1 AGCAGATCTGACCTTCA
23196331 TTGAAGCAGA
Statistics
Matches: 411, Mismatches: 34, Indels: 15
0.89 0.07 0.03
Matches are distributed among these distances:
209 70 0.17
210 1 0.00
214 1 0.00
219 1 0.00
220 179 0.44
221 159 0.39
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (220 bp):
AGCAGATCTGACCTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTG
TCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACA
TAGCAGATCTAACCTTCGGATTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCTCTGTAT
TAGACGGAGAGCAGATCGAAGACAC
Found at i:23196322 original size:78 final size:78
Alignment explanation
Indices: 23196193--23196487 Score: 407
Period size: 78 Copynumber: 3.8 Consensus size: 78
23196183 CGAAGAAACA
** * * * *
23196193 GATTTGGCATCTCCATATTCGACGGAGAACAGATTGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
*
23196258 GCAGATCAAAGAT
66 GCAGATCCAAGAT
23196271 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
23196336 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
23196349 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATTGAAGACATAACAGAT-TAGACCTTCATTG
1 GATTTGGCATCTCTGTATTAGAC-GGAGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTG
*
23196412 AAGTAGATCCAAGAT
64 AAGCAGATCCAAGAT
** * *
23196427 GATTTCACATCTCTGTATTAGACGGGGAGTAGATCGAAGACATCA-CAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACA-CAGCAGATCTGACCTTCAT
23196488 GTGTTTACAT
Statistics
Matches: 196, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
77 3 0.02
78 189 0.96
79 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:23196687 original size:45 final size:45
Alignment explanation
Indices: 23196501--23196694 Score: 228
Period size: 45 Copynumber: 4.3 Consensus size: 45
23196491 TTTACATCGA
* * ** * *
23196501 AGCAGATCCAAGATGACAGATTTGGTATTTCTGTATTAGACGAGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * * *
23196546 AGCAAATTGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * *
23196591 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACAGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
* * *
23196635 AGCAGATCGAAGATAATAGATTTGACGTCTTTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
*
23196680 AGCAGATCAAAGATA
1 AGCAGATCGAAGATA
23196695 GTAGATATCG
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 40 0.31
45 88 0.69
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
Found at i:23197080 original size:17 final size:18
Alignment explanation
Indices: 23197060--23197104 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
23197050 AATGATATAA
*
23197060 AATCTTAGATATGGTA-C
1 AATCTTAGATATGATAGC
23197077 AATCTTAGATATGATATGC
1 AATCTTAGATATGATA-GC
23197096 AATCTTAGA
1 AATCTTAGA
23197105 AGATATGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 15 0.60
19 10 0.40
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
AATCTTAGATATGATAGC
Found at i:23197429 original size:18 final size:20
Alignment explanation
Indices: 23197393--23197431 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
23197383 ATGTTTCCCG
23197393 AATTTTTTTATATATATTTT
1 AATTTTTTTATATATATTTT
23197413 AATTTTTTTA-ATA-ATTTT
1 AATTTTTTTATATATATTTT
23197431 A
1 A
23197432 GTATCATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 3 0.16
20 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
AATTTTTTTATATATATTTT
Found at i:23198558 original size:19 final size:19
Alignment explanation
Indices: 23198512--23198570 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 19
23198502 ATCTTTAAGA
23198512 ATATGCAATCTTAGATATG
1 ATATGCAATCTTAGATATG
23198531 ATA--CAATCTTAGATATG
1 ATATGCAATCTTAGATATG
23198548 ATATGCAATCTTGAAGATATG
1 ATATGCAATCTT--AGATATG
23198569 AT
1 AT
23198571 CCTGTAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.47
19 10 0.28
21 9 0.25
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATATGCAATCTTAGATATG
Found at i:23204200 original size:19 final size:18
Alignment explanation
Indices: 23204174--23204236 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
23204164 TTCTATTTCA
23204174 AAAAAAAAGGAAAAAAAG
1 AAAAAAAAGGAAAAAAAG
* *
23204192 AAAAGAAAAGGAATAAAAT
1 AAAA-AAAAGGAAAAAAAG
*
23204211 AAAATAAAAAG-AAAAAAG
1 AAAA-AAAAGGAAAAAAAG
23204229 AAAAAAAA
1 AAAAAAAA
23204237 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
17 4 0.11
18 13 0.34
19 21 0.55
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAAAAAAGGAAAAAAAG
Found at i:23205325 original size:84 final size:84
Alignment explanation
Indices: 23205182--23206220 Score: 1509
Period size: 84 Copynumber: 12.4 Consensus size: 84
23205172 CAAAATTCAG
23205182 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
23205247 GTGGAACGGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
23205266 CACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATTTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23205331 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
23205350 CTCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTACCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23205415 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
*
23205434 CGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23205499 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
23205518 CACCTTAATCCCCTGAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23205583 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
23205602 TGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
23205667 GTAGAGCAGATTGAAGACT
66 GTGGAGCAGATCGAAGACT
* *
23205686 CGCCTTAATCCCCTAAGCAGTAAGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
23205746 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * * *
23205768 CACCTTAATCCCCTAAGTAGTAGGGTAACAAGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23205833 GTGGAGCAGATCGAAGAC-
66 GTGGAGCAGATCGAAGACT
** * *
23205851 CTGCCTTAATCTTCTAAGCAGTAAGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGT
1 C-GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGT
*
23205911 AGCGGAGCAGATCGACGACGACT
65 AGTGGAGCAGATCGA--A-GACT
* *
23205934 CGCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTGCAGATCTTATCTCCTTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
23205999 GTGGACCAGATCGAATACC
66 GTGGAGCAGATCGAAGACT
* *
23206018 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
23206078 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
* * *
23206100 CTCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
23206165 GTGGAGCAGATCGAAGA-T
66 GTGGAGCAGATCGAAGACT
* * *
23206183 GCGCCTTAACCCCCTAAGCAGTAGGATAATAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
23206221 GTATAGCAGA
Statistics
Matches: 857, Mismatches: 71, Indels: 54
0.87 0.07 0.05
Matches are distributed among these distances:
79 114 0.13
81 3 0.00
82 93 0.11
83 3 0.00
84 525 0.61
85 3 0.00
87 116 0.14
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:23205462 original size:168 final size:170
Alignment explanation
Indices: 23205182--23206220 Score: 1521
Period size: 166 Copynumber: 6.2 Consensus size: 170
23205172 CAAAATTCAG
*
23205182 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
* * * * *
23205247 GTGGAACGGATCGA-A-GACTCACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
66 GCGGAGCAGATCGACACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
*
23205310 ATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * *
23205350 CTCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTACCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
* * *
23205415 GTGGAGCAGATCGA-A-GACTCGCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAG
66 GCGGAGCAGATCGACACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
23205478 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * *
23205518 CACCTTAATCCCCTGAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
* *
23205583 GTGGAGCAGATCGA-A-GACTTGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
66 GCGGAGCAGATCGACACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
* *
23205646 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATTGAAGACT
131 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
23205686 CGCCTTAATCCCCTAAGCAGTAAGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
* * *
23205746 GCGGAGCAGATCGACGACGACTCACCTTAATCCCCTAAGTAGTAGGGTAACAAGTTAAATTTACA
66 GCGGAGCAGATCGAC-ACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACA
23205811 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-
130 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
** *
23205851 CTGCCTTAATCTTCTAAGCAGTAAGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGT
1 C-GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGT
* *
23205911 AGCGGAGCAGATCGACGACGACTCGCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTGC
65 AGCGGAGCAGATCGAC-ACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTAC
* * * *
23205976 AGATCTTATCTCCTTAAGCAGTAGTGGACCAGATCGAATACC
129 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
23206018 CGCCTTAATCCCTTAAGCAGTAGGGTAACAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
* *
23206078 GCGGAGCAGATCGACGACGACTCTCCTTAATCCCCTAAGCAGTAGAGTAACAGGTTAAATTTACA
66 GCGGAGCAGATCGAC-ACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACA
23206143 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-T
130 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * *
23206183 GCGCCTTAACCCCCTAAGCAGTAGGATAATAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
23206221 GTATAGCAGA
Statistics
Matches: 810, Mismatches: 50, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
163 40 0.05
165 2 0.00
166 417 0.51
167 1 0.00
168 350 0.43
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (170 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTCGCAGATCTTATCTCCCTAAGCAGTA
GCGGAGCAGATCGACACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
Found at i:23206507 original size:87 final size:89
Alignment explanation
Indices: 23206345--23206543 Score: 260
Period size: 87 Copynumber: 2.3 Consensus size: 89
23206335 CGGAGAGTAG
* * *
23206345 ATCGAAGACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCTAAAATGATTTAG
1 ATCGAAGACATAGCAGATCTGACCTTCGGATAGTTTCACACTGAAGCAGATCCAAAATGATTTAG
* *
23206410 CATCCTTATGTTTACAAGGAGCAA
66 CATCCCTATGTTTACAAGGAACAA
* * *
23206434 ATCGAAGACATAGCAGATCTGACCTTCAGG-T-GTTT-ACGCTGAAGTAGATCCAAAATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTTC-GGATAGTTTCACACTGAAGCAGATCCAAAATGATTTA
* * *
23206496 GCATCCCTATGTTTACAGGGAATAG
65 GCATCCCTATGTTTACAAGGAACAA
*
23206521 ATCGAAGACCTAGCAGATCTGAC
1 ATCGAAGACATAGCAGATCTGAC
23206544 ATTCCTGTGC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
87 64 0.66
88 3 0.03
89 28 0.29
90 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTCGGATAGTTTCACACTGAAGCAGATCCAAAATGATTTAG
CATCCCTATGTTTACAAGGAACAA
Found at i:23206570 original size:87 final size:87
Alignment explanation
Indices: 23206388--23206570 Score: 224
Period size: 87 Copynumber: 2.1 Consensus size: 87
23206378 TTTCACATTG
* * *
23206388 AAGCAGATCTAAAATGATTTAGCATCCTTATGTTTACAAGGAGCAAATCGAAGACATAGCAGATC
1 AAGCAGATCCAAAATGATTTAGCATCCCTATGTTTACAAGGAACAAATCGAAGACATAGCAGATC
* * *
23206453 TGACCTTCAGGTGTTTACGCTG
66 TGACATTCAGGTGCTTACGCTA
* * * * * *
23206475 AAGTAGATCCAAAATGATTTGGCATCCCTATGTTTACAGGGAATAGATCGAAGACCTAGCAGATC
1 AAGCAGATCCAAAATGATTTAGCATCCCTATGTTTACAAGGAACAAATCGAAGACATAGCAGATC
**
23206540 TGACATTCCTGTGCTTACAGC-A
66 TGACATTCAGGTGCTTAC-GCTA
23206562 AAGCAGATC
1 AAGCAGATC
23206571 GAAGATTTCA
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
87 78 0.98
88 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (87 bp):
AAGCAGATCCAAAATGATTTAGCATCCCTATGTTTACAAGGAACAAATCGAAGACATAGCAGATC
TGACATTCAGGTGCTTACGCTA
Found at i:23209080 original size:15 final size:17
Alignment explanation
Indices: 23209047--23209090 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
23209037 GTAATTAGGG
23209047 TTAGGGTTTTAAGAATT
1 TTAGGGTTTTAAGAATT
*
23209064 TT-GGGTTTTTA-AATT
1 TTAGGGTTTTAAGAATT
23209079 TTAGGGTTTTAA
1 TTAGGGTTTTAA
23209091 AGAAAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.25
16 16 0.67
17 2 0.08
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (17 bp):
TTAGGGTTTTAAGAATT
Found at i:23209091 original size:15 final size:15
Alignment explanation
Indices: 23209047--23209091 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
23209037 GTAATTAGGG
23209047 TTAGGGTTTTAAGAATT
1 TTAGGGTTTT-A-AATT
23209064 TT-GGGTTTTTAAATT
1 TTAGGG-TTTTAAATT
23209079 TTAGGGTTTTAAA
1 TTAGGGTTTTAAA
23209092 GAAAAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 13 0.50
16 7 0.27
17 6 0.23
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (15 bp):
TTAGGGTTTTAAATT
Found at i:23209194 original size:96 final size:95
Alignment explanation
Indices: 23209078--23209284 Score: 234
Period size: 96 Copynumber: 2.1 Consensus size: 95
23209068 GTTTTTAAAT
* * * ** *
23209078 TTTAGGGTTTTAAAGAAAAAAGTTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATTAC
1 TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA-
*
23209143 TAATTTTAAAAAATTAGATTATGGTTTAGTG
65 TAAATTTAAAAAATTAGATTATGGTTTAGTG
* * * * *
23209174 TTTATGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTAT
* * *
23209239 AAATTTAAAAAAAAAATAGATTATGATTTTAGGG
66 AAATTT---AAAAAATTAGATTATG-GTTTAGTG
23209273 TTTAGGGTTTTA
1 TTTAGGGTTTTA
23209285 GGATATTTAA
Statistics
Matches: 90, Mismatches: 17, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
95 6 0.07
96 53 0.59
98 15 0.17
99 16 0.18
ACGTcount: A:0.41, C:0.01, G:0.17, T:0.41
Consensus pattern (95 bp):
TTTAGGGTTTTAAAGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTAT
AAATTTAAAAAATTAGATTATGGTTTAGTG
Found at i:23209732 original size:125 final size:125
Alignment explanation
Indices: 23209373--23209904 Score: 827
Period size: 125 Copynumber: 4.3 Consensus size: 125
23209363 AAGTTTCTAG
*
23209373 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAAAATTTTGAGAAGACGTGTCTGCGCAAATA
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAATA
*
23209438 --GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
66 GTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
** * * **
23209496 GTAAACGCTCTTTTGCTACAGTAGTATCTAAAAAAATAATTTTGAGAAGACGTGTCTATGCAAAT
1 GTGGACGCTCTTTTGCTACAGTAGTCTCT-GAAAAATAATTTTGAGAAGACGTGTCTGCGCAAAT
* *
23209561 AGTGTAAAAAACGCTTCAAGCGGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCCAC
65 AGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
23209622 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAATA
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAATA
* * *
23209687 GTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCCAC
66 GT-GTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* * **
23209747 ATGGATGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCATAAATA
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAATA
* * *
23209812 GTGTCAAAAACACTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCCAC
66 GTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
* *
23209872 GTGGACGCTCTTTTGCTACAGTGGTTTCTGAAA
1 GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
23209905 TAACTTGGGC
Statistics
Matches: 372, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
123 26 0.07
124 34 0.09
125 229 0.62
126 83 0.22
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (125 bp):
GTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAATAATTTTGAGAAGACGTGTCTGCGCAAATA
GTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCCAC
Found at i:23213290 original size:117 final size:116
Alignment explanation
Indices: 23212929--23213312 Score: 660
Period size: 116 Copynumber: 3.3 Consensus size: 116
23212919 TTTATATTTT
* * *
23212929 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTACATTTTATTA
* * *
23212994 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
23213045 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAATTAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTACATTTTATTA
23213110 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
23213161 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTACATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTACATTTTATT-
*
23213226 AAAAATATAAAAGTAAATTGCAATTACTTTATTTAAAACAACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
*
23213278 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
23213313 TGTACAAATA
Statistics
Matches: 254, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
116 169 0.67
117 85 0.33
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTACATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:23213729 original size:18 final size:18
Alignment explanation
Indices: 23213703--23213739 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23213693 AAAAATGAAG
*
23213703 CATATAAGGGCTAGGATA
1 CATAAAAGGGCTAGGATA
23213721 CATAAAAGGGCTAGGATA
1 CATAAAAGGGCTAGGATA
23213739 C
1 C
23213740 GTACCTGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.19
Consensus pattern (18 bp):
CATAAAAGGGCTAGGATA
Found at i:23215577 original size:20 final size:20
Alignment explanation
Indices: 23215544--23215594 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
23215534 TAACGAGAGT
23215544 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGA-G-ATTTAAGAGAAA
* * *
23215566 TTTGAGAGATTTGATAGGAA
1 TTTGAGAGATTTAAGAGAAA
23215586 TTTGAGAGA
1 TTTGAGAGA
23215595 ATATTGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 18 0.69
21 1 0.04
22 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.31
Consensus pattern (20 bp):
TTTGAGAGATTTAAGAGAAA
Found at i:23215588 original size:11 final size:11
Alignment explanation
Indices: 23215544--23215593 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
23215534 TAACGAGAGT
23215544 TTTGAGAGGAA
1 TTTGAGAGGAA
* *
23215555 TTTAAGAGAAA
1 TTTGAGAGGAA
23215566 TTTGAGA-G-A
1 TTTGAGAGGAA
*
23215575 TTTGATAGGAA
1 TTTGAGAGGAA
23215586 TTTGAGAG
1 TTTGAGAG
23215594 AATATTGAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
9 7 0.23
10 1 0.03
11 23 0.74
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32
Consensus pattern (11 bp):
TTTGAGAGGAA
Found at i:23215601 original size:11 final size:10
Alignment explanation
Indices: 23215544--23215601 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
23215534 TAACGAGAGT
23215544 TTTGAGAGGAA
1 TTTGAGA-GAA
*
23215555 TTTAAGAGAAA
1 TTTGAGAG-AA
23215566 TTTGAGAG-A
1 TTTGAGAGAA
*
23215575 TTTGATAGGAA
1 TTTGAGA-GAA
23215586 TTTGAGAGAA
1 TTTGAGAGAA
23215596 TATTGA
1 T-TTGA
23215602 AAGATTGAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 7 0.18
10 6 0.15
11 26 0.67
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.33
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:23215607 original size:31 final size:31
Alignment explanation
Indices: 23215544--23215607 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
23215534 TAACGAGAGT
*
23215544 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
* *
23215575 TTTGATAGGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-TTGAAAGA
23215606 TT
1 TT
23215608 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.33
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
Found at i:23216722 original size:21 final size:22
Alignment explanation
Indices: 23216698--23216738 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
23216688 TAAAAAATTT
23216698 TAAAAAAATT-CTAAAATAAAA
1 TAAAAAAATTACTAAAATAAAA
* *
23216719 TAAAAACATTACTAATATAA
1 TAAAAAAATTACTAAAATAA
23216739 TTATATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAAAAATTACTAAAATAAAA
Found at i:23217978 original size:19 final size:20
Alignment explanation
Indices: 23217954--23217998 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
23217944 GCAGAGGTAA
23217954 TAAAATGCAT-AACAAAAAT
1 TAAAATGCATAAACAAAAAT
* *
23217973 TAAAATGTATAAACAAATAT
1 TAAAATGCATAAACAAAAAT
23217993 TAAAAT
1 TAAAAT
23217999 AAAGTTTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.27
Consensus pattern (20 bp):
TAAAATGCATAAACAAAAAT
Found at i:23219879 original size:24 final size:24
Alignment explanation
Indices: 23219851--23219902 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
23219841 TACACACACT
23219851 TAAACTAAATGCACGGAAGCTATG
1 TAAACTAAATGCACGGAAGCTATG
*
23219875 TAAACTAGATGCACGGAAGCTATG
1 TAAACTAAATGCACGGAAGCTATG
23219899 TAAA
1 TAAA
23219903 ATTATTGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (24 bp):
TAAACTAAATGCACGGAAGCTATG
Found at i:23225209 original size:7 final size:7
Alignment explanation
Indices: 23225197--23225237 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
23225187 TAAAAATAAT
23225197 AATTGAA
1 AATTGAA
*
23225204 AATTGAG
1 AATTGAA
23225211 AATTGAA
1 AATTGAA
23225218 AATTGAA
1 AATTGAA
23225225 AATTGAA
1 AATTGAA
23225232 AATTGA
1 AATTGA
23225238 GGACCGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (7 bp):
AATTGAA
Found at i:23226075 original size:17 final size:18
Alignment explanation
Indices: 23226049--23226083 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23226039 ACTACAAACG
23226049 AAAATAAAAA-TTATATA
1 AAAATAAAAATTTATATA
*
23226066 AAAATCAAAATTTATATA
1 AAAATAAAAATTTATATA
23226084 CCATAGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
AAAATAAAAATTTATATA
Found at i:23226081 original size:16 final size:17
Alignment explanation
Indices: 23226049--23226083 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23226039 ACTACAAACG
23226049 AAAATAAAAATTATATA
1 AAAATAAAAATTATATA
*
23226066 AAAATCAAAATTTATATA
1 AAAAT-AAAAATTATATA
23226084 CCATAGCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAATAAAAATTATATA
Found at i:23226548 original size:15 final size:16
Alignment explanation
Indices: 23226530--23226571 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
23226520 GTAATTTACA
23226530 TTTTAAAAATTTTA-T
1 TTTTAAAAATTTTAGT
* *
23226545 TTTTATAATTTTTAGT
1 TTTTAAAAATTTTAGT
23226561 TTTTAAAAATT
1 TTTTAAAAATT
23226572 AGTTAATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTTAAAAATTTTAGT
Found at i:23231771 original size:38 final size:38
Alignment explanation
Indices: 23231728--23231895 Score: 158
Period size: 38 Copynumber: 4.2 Consensus size: 38
23231718 TTTCAAATTA
*
23231728 ACATGTATAACCGTGGCATATCCACTTAGCACCATGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
23231766 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
23231807 GAATCAATATATGTAACCATGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
23231851 ACATGTTTAA-CGTAGTATATCCTCTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
*
23231888 ATATGTAT
1 ACATGTAT
23231896 CAATATGTGT
Statistics
Matches: 106, Mismatches: 15, Indels: 19
0.76 0.11 0.14
Matches are distributed among these distances:
37 29 0.27
38 36 0.34
39 1 0.01
40 3 0.03
41 2 0.02
42 1 0.01
43 1 0.01
44 2 0.02
45 3 0.03
46 1 0.01
47 27 0.25
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:23231830 original size:85 final size:85
Alignment explanation
Indices: 23231735--23231935 Score: 314
Period size: 85 Copynumber: 2.4 Consensus size: 85
23231725 TTAACATGTA
* *
23231735 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAA-CGTAGTATATCCACTTAGCACCA
23231800 CGTTA-ATGAATCAATATATG
65 CGTTATATGAATCAATATATG
* *
23231820 TAACCATGGCATATCCACTTAGCACCACGTTACATGTTTAACGTAGTATATCCTCTTAGCACCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACGTAGTATATCCACTTAGCACCAC
* *
23231885 GTTATATGTATCAATATGTG
66 GTTATATGAATCAATATATG
* *
23231905 TAATCGTGGTATATCCACTTAGCACCACGTT
1 TAACCGTGGCATATCCACTTAGCACCACGTT
23231936 TTTTCATTCT
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
84 26 0.25
85 80 0.75
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACGTAGTATATCCACTTAGCACCAC
GTTATATGAATCAATATATG
Found at i:23233899 original size:25 final size:25
Alignment explanation
Indices: 23233870--23233958 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
23233860 AGACACACGA
*
23233870 CAGCTCGTATGAGCTTACCAATTCT
1 CAGCTCGTATGAGCTTACCGATTCT
* *
23233895 CAGCTCGTATAAGCTTACCGATTCA
1 CAGCTCGTATGAGCTTACCGATTCT
23233920 CAGCTCGTATGAGCTTACCGATTCAT
1 CAGCTCGTATGAGCTTACCGATTC-T
23233946 -AGCTCGTATGAGC
1 CAGCTCGTATGAGC
23233959 AGACATGTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTCT
Found at i:23236013 original size:16 final size:16
Alignment explanation
Indices: 23235992--23236035 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
23235982 AAAATAGAAT
23235992 AATTTAAAATAA-TTTA
1 AATTTAAAA-AACTTTA
23236008 AATTTAAAAAACTTTAA
1 AATTTAAAAAACTTT-A
*
23236025 AACTTAAAAAA
1 AATTTAAAAAA
23236036 TAACTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 2 0.08
16 12 0.48
17 11 0.44
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
AATTTAAAAAACTTTA
Found at i:23236383 original size:23 final size:24
Alignment explanation
Indices: 23236333--23236387 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
23236323 AATTAAAGTC
23236333 ACCGTTGGACTGTTTCAATATTTT
1 ACCGTTGGACTGTTTCAATATTTT
* *
23236357 ACCGTTGGAGTGTTTGAAT-TTTT
1 ACCGTTGGACTGTTTCAATATTTT
23236380 ACCGTTGG
1 ACCGTTGG
23236388 GGAAAAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.44
Consensus pattern (24 bp):
ACCGTTGGACTGTTTCAATATTTT
Found at i:23237839 original size:21 final size:20
Alignment explanation
Indices: 23237792--23237846 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 20
23237782 ATATATATAT
* *
23237792 ATATATAAG-TATAATTGAA
1 ATATATAAGTTTTAATTAAA
23237811 ATATTATAAGTTTTAATTAAA
1 ATA-TATAAGTTTTAATTAAA
*
23237832 ATTATATAATTTTTA
1 A-TATATAAGTTTTA
23237847 TAACTAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 6 0.20
21 19 0.63
22 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
ATATATAAGTTTTAATTAAA
Found at i:23238068 original size:16 final size:17
Alignment explanation
Indices: 23238047--23238080 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23238037 ATAAAGACAT
23238047 AATAAA-ATATTAAAAA
1 AATAAATATATTAAAAA
*
23238063 AATAAATATTTTAAAAA
1 AATAAATATATTAAAAA
23238080 A
1 A
23238081 GATACATGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAATATATTAAAAA
Found at i:23244057 original size:18 final size:20
Alignment explanation
Indices: 23244034--23244071 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
23244024 AACTACTTAA
23244034 TTAAAA-TTTATA-ATTTTT
1 TTAAAATTTTATATATTTTT
23244052 TTAAAATTTTATATATTTTT
1 TTAAAATTTTATATATTTTT
23244072 AATTTCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTAAAATTTTATATATTTTT
Found at i:23251358 original size:75 final size:75
Alignment explanation
Indices: 23251235--23251385 Score: 302
Period size: 75 Copynumber: 2.0 Consensus size: 75
23251225 CACAGCAAAG
23251235 TAAGAGATGAGAGGGGGTGGACTAACGGGTGGCGCTCATCTCTACCAAAACGAGACACCTCACTC
1 TAAGAGATGAGAGGGGGTGGACTAACGGGTGGCGCTCATCTCTACCAAAACGAGACACCTCACTC
23251300 GCGGCATCTT
66 GCGGCATCTT
23251310 TAAGAGATGAGAGGGGGTGGACTAACGGGTGGCGCTCATCTCTACCAAAACGAGACACCTCACTC
1 TAAGAGATGAGAGGGGGTGGACTAACGGGTGGCGCTCATCTCTACCAAAACGAGACACCTCACTC
23251375 GCGGCATCTT
66 GCGGCATCTT
23251385 T
1 T
23251386 CTTTACCCTT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (75 bp):
TAAGAGATGAGAGGGGGTGGACTAACGGGTGGCGCTCATCTCTACCAAAACGAGACACCTCACTC
GCGGCATCTT
Found at i:23255055 original size:18 final size:18
Alignment explanation
Indices: 23255022--23255056 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23255012 TGCCATTAAC
* *
23255022 ATCATCATCGTTATCGTT
1 ATCATCATCATCATCGTT
23255040 ATCATCATCATCATCGT
1 ATCATCATCATCATCGT
23255057 CATCTTCTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (18 bp):
ATCATCATCATCATCGTT
Found at i:23257066 original size:16 final size:16
Alignment explanation
Indices: 23257047--23257077 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23257037 TTATTCACAC
*
23257047 TTTGATTTTAGTAAAA
1 TTTGATTTTACTAAAA
23257063 TTTGATTTTACTAAA
1 TTTGATTTTACTAAA
23257078 GATTAAAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.52
Consensus pattern (16 bp):
TTTGATTTTACTAAAA
Found at i:23262796 original size:19 final size:20
Alignment explanation
Indices: 23262759--23262804 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
23262749 CGGAAAATAA
23262759 TTTCTGGAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
**
23262779 TTTCTGG-AAATGGTTTACT
1 TTTCTGGAAAATGACTTACT
23262798 TTTCTGG
1 TTTCTGG
23262805 TGTTTGGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.46
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:23264512 original size:46 final size:46
Alignment explanation
Indices: 23264147--23264499 Score: 465
Period size: 46 Copynumber: 7.7 Consensus size: 46
23264137 TTATCTTTGA
* * * * * *
23264147 CATGATGCCATAGTGTCTTTCAACTATGATCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
23264193 CATGTTGCCATGATATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * * *
23264239 CACGTTGCTATGGTATCTTTCAACCATGGCCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
23264285 CACGCTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * **
23264331 TACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
**
23264377 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* ** *
23264423 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
23264469 CATGTTGCCATGGTATCTTTCAACCATGGTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTC
23264500 CTACACATTT
Statistics
Matches: 275, Mismatches: 31, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.01
46 271 0.99
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:23268771 original size:18 final size:19
Alignment explanation
Indices: 23268748--23268785 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
23268738 TTTGCAACCC
*
23268748 AAGGGGAAGG-GAAATGGG
1 AAGGGGAAGGAGAAAGGGG
23268766 AAGGGGAAGGAGAAAGGGG
1 AAGGGGAAGGAGAAAGGGG
23268785 A
1 A
23268786 GAAGAAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.55, T:0.03
Consensus pattern (19 bp):
AAGGGGAAGGAGAAAGGGG
Found at i:23268950 original size:14 final size:14
Alignment explanation
Indices: 23268931--23268957 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23268921 AGAAAAGCCT
23268931 GAAAAGCTTTTACG
1 GAAAAGCTTTTACG
23268945 GAAAAGCTTTTAC
1 GAAAAGCTTTTAC
23268958 CGGTTACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (14 bp):
GAAAAGCTTTTACG
Found at i:23271689 original size:24 final size:24
Alignment explanation
Indices: 23271661--23271710 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
23271651 TGAAAGAGGT
*
23271661 TGATGTCCTAGAAATTGATGGCAC
1 TGATGTCCTAGAAATTGATAGCAC
23271685 TGATGTCCTAGAAATTGATAGCAC
1 TGATGTCCTAGAAATTGATAGCAC
23271709 TG
1 TG
23271711 CTTTCATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (24 bp):
TGATGTCCTAGAAATTGATAGCAC
Found at i:23287468 original size:14 final size:14
Alignment explanation
Indices: 23287449--23287476 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23287439 TAAATCTCCC
23287449 ATATCTATCACACG
1 ATATCTATCACACG
23287463 ATATCTATCACACG
1 ATATCTATCACACG
23287477 TTGGCTTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.07, T:0.29
Consensus pattern (14 bp):
ATATCTATCACACG
Found at i:23288343 original size:247 final size:246
Alignment explanation
Indices: 23287908--23288411 Score: 911
Period size: 247 Copynumber: 2.0 Consensus size: 246
23287898 GCTTACACAA
* *
23287908 ATCAATTTCAACACAAACTCTTGCAAATTTCCCCTAGTAGTATAAGTCATATTAGAATCTAATTT
1 ATCAATTTCAACACAAACTCTTGCAAATTTCCCCTAATAGTATAAGTCATATTAGAATATAATTT
23287973 AATGGGTTTTCCAACAATCTTCCCCACTTTAACAAGTACTTCATTGAAATATTCCAAAGGTAAAC
66 AATGGGTTTTCCAACAATCTTCCCCACTTTAACAAGTACTTCATTGAAATATTCCAAAGGTAAAC
*
23288038 CAGGCAATTGAATCCACACAACTGTGGATACAATCATTCTGATAGCTAGGTGAAAGTTCGACTTC
131 CAGGCAATTGAATCCACACAACTGTGGATACAATCATTCTGATAGCTAGGTGAAAGTTCAACTTC
23288103 CATTTTTGTATCGTCAGATAATGATCCATAATCTTCCAAGTACCCGTCGTT
196 CATTTTTGTATCGTCAGATAATGATCCATAATCTTCCAAGTACCCGTCGTT
*
23288154 ATCAATTTCAACACAAACTCTTGCAAATTTCCCCCTAATAGTATAAGTCGTATTAGAATATAATT
1 ATCAATTTCAACACAAACTCTTGCAAATTT-CCCCTAATAGTATAAGTCATATTAGAATATAATT
23288219 TAATGGGTTTTCCAACAATCTTCCCCACTTTAACAAGTACTTCATTGAAATATTCCAAAGGTAAA
65 TAATGGGTTTTCCAACAATCTTCCCCACTTTAACAAGTACTTCATTGAAATATTCCAAAGGTAAA
* *
23288284 CTAGGCAATTGAATCCACACAACTGTGGATACAATCATTCTGATAG-TCGGGTGAAAGTTCAACT
130 CCAGGCAATTGAATCCACACAACTGTGGATACAATCATTCTGATAGCT-AGGTGAAAGTTCAACT
*
23288348 TCCATTTTTGTATCGTCAGATAATGATCCATAATCTTCCAAGTACTCGTCGTT
194 TCCATTTTTGTATCGTCAGATAATGATCCATAATCTTCCAAGTACCCGTCGTT
*
23288401 ATCACTTTCAA
1 ATCAATTTCAA
23288412 ACCATCATCT
Statistics
Matches: 248, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
246 31 0.12
247 217 0.88
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (246 bp):
ATCAATTTCAACACAAACTCTTGCAAATTTCCCCTAATAGTATAAGTCATATTAGAATATAATTT
AATGGGTTTTCCAACAATCTTCCCCACTTTAACAAGTACTTCATTGAAATATTCCAAAGGTAAAC
CAGGCAATTGAATCCACACAACTGTGGATACAATCATTCTGATAGCTAGGTGAAAGTTCAACTTC
CATTTTTGTATCGTCAGATAATGATCCATAATCTTCCAAGTACCCGTCGTT
Found at i:23294105 original size:29 final size:29
Alignment explanation
Indices: 23294062--23294118 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
23294052 AAAATGAACT
*
23294062 AAATGAAAATCTCATGTATAAACATGTATA
1 AAATCAAAATCTCATGTATAAAC-TGTATA
*
23294092 AAATCAAAAT-TCATGTATGAACTGTAT
1 AAATCAAAATCTCATGTATAAACTGTAT
23294119 GTGATGGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.20
29 11 0.44
30 9 0.36
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (29 bp):
AAATCAAAATCTCATGTATAAACTGTATA
Found at i:23302741 original size:17 final size:16
Alignment explanation
Indices: 23302719--23302752 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23302709 TTATCTTTAA
23302719 ATATTTATATAATATTT
1 ATATTTATATAAT-TTT
*
23302736 ATATTTCTATAATTTT
1 ATATTTATATAATTTT
23302752 A
1 A
23302753 AACTACTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
ATATTTATATAATTTT
Found at i:23305622 original size:10 final size:10
Alignment explanation
Indices: 23305596--23305638 Score: 56
Period size: 11 Copynumber: 4.5 Consensus size: 10
23305586 TGATTAAGGT
23305596 ATGATTTTTG
1 ATGATTTTTG
23305606 ATCGATTTTTG
1 AT-GATTTTTG
23305617 ATGATTTTT-
1 ATGATTTTTG
23305626 ATG-TTTTTG
1 ATGATTTTTG
23305635 -TGAT
1 ATGAT
23305639 CGTTGCTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.23
9 4 0.13
10 9 0.30
11 10 0.33
ACGTcount: A:0.19, C:0.02, G:0.19, T:0.60
Consensus pattern (10 bp):
ATGATTTTTG
Found at i:23313383 original size:47 final size:47
Alignment explanation
Indices: 23313319--23313448 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 47
23313309 GTGCAAATAA
***
23313319 TACCTTGATTTGGCTACGGGCCATGATATAGGTA-TTTTGAGA-AGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTACTCCAG-GATA-AGT
*
23313366 TACCTTGATTTGGCTACGAGCCAT-AGTATAGGTACTCCAGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGA-TATAGGTACTCCAGGATAAGT
* *
23313413 TACCTTGATTTGGCTACGGGCCATGGTAGAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTACT
23313449 TATCGATTGT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 1 0.01
47 68 0.94
48 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTACTCCAGGATAAGT
Found at i:23316075 original size:31 final size:31
Alignment explanation
Indices: 23316040--23316100 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
23316030 TGTCAAAAAC
23316040 ATAAATCATTTTCCTAAAGTGATAGGTTAAG
1 ATAAATCATTTTCCTAAAGTGATAGGTTAAG
* *
23316071 ATAAATCATTTTCCTAAAGTTATATGTTAA
1 ATAAATCATTTTCCTAAAGTGATAGGTTAA
23316101 CATTTTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.39
Consensus pattern (31 bp):
ATAAATCATTTTCCTAAAGTGATAGGTTAAG
Found at i:23317582 original size:26 final size:23
Alignment explanation
Indices: 23317551--23317599 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 23
23317541 AAATCAAATT
23317551 AAAATAATTTATGTATATAACATTTA
1 AAAATAATTT-T-TATATAA-ATTTA
23317577 AAAATAATTTTTATATAAATTTA
1 AAAATAATTTTTATATAAATTTA
23317600 TTAATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.22
24 7 0.30
25 1 0.04
26 10 0.43
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
AAAATAATTTTTATATAAATTTA
Found at i:23319193 original size:48 final size:48
Alignment explanation
Indices: 23319111--23319204 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
23319101 TTTCTTGGCT
* * *
23319111 TAAAAATGCCTAAGTCAGCCTAATTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
*
23319159 TAAAAACGCCTAAGTTAG-CTCAA-TTCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AATTTC-CAACAATAAAGGATTCAAC
23319205 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 5 0.12
48 35 0.88
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
Found at i:23321709 original size:48 final size:48
Alignment explanation
Indices: 23321627--23321720 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
23321617 TTTCTTGGCT
* * *
23321627 TAAAAATGCCTAAGTCAGCCTAATTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
*
23321675 TAAAAACGCCTAAGTTAG-CTCAA-TTCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AATTTC-CAACAATAAAGGATTCAAC
23321721 AGAATTCCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 5 0.12
48 35 0.88
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAATTTCCAACAATAAAGGATTCAACCG
Done.