Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 74 of 356
Found at i:23327077 original size:4 final size:4
Alignment explanation
Indices: 23327070--23327125 Score: 112
Period size: 4 Copynumber: 14.0 Consensus size: 4
23327060 CACGCATGCA
23327070 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
23327118 TATG TATG
1 TATG TATG
23327126 GCTTAAAATG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:23337260 original size:19 final size:21
Alignment explanation
Indices: 23337221--23337264 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
23337211 TAGGTAATTC
23337221 TAAAAATTAAATAAAAGTAGA
1 TAAAAATTAAATAAAAGTAGA
*
23337242 TAAAATTTAAA-AAAA-TAGA
1 TAAAAATTAAATAAAAGTAGA
23337261 TAAA
1 TAAA
23337265 GTGAGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.36
20 4 0.18
21 10 0.45
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (21 bp):
TAAAAATTAAATAAAAGTAGA
Found at i:23343789 original size:20 final size:20
Alignment explanation
Indices: 23343766--23343813 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
23343756 AAATCCAAAT
23343766 TAAAATACTGAAATTAAGGA
1 TAAAATACTGAAATTAAGGA
* * *
23343786 TAAACTCCTGAAATTTAGGA
1 TAAAATACTGAAATTAAGGA
23343806 TAAGAATA
1 TAA-AATA
23343814 TTGATGTGGC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (20 bp):
TAAAATACTGAAATTAAGGA
Found at i:23344787 original size:31 final size:31
Alignment explanation
Indices: 23344747--23344806 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
23344737 AAAATTTCAA
* **
23344747 AATTTGAAAACTATTGGGACTAAAATTGACC
1 AATTCGAAAACTAGAGGGACTAAAATTGACC
*
23344778 AATTCGAAAAGTAGAGGGACTAAAATTGA
1 AATTCGAAAACTAGAGGGACTAAAATTGA
23344807 TCAAATAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (31 bp):
AATTCGAAAACTAGAGGGACTAAAATTGACC
Found at i:23346785 original size:61 final size:61
Alignment explanation
Indices: 23346715--23346833 Score: 186
Period size: 61 Copynumber: 2.0 Consensus size: 61
23346705 AATGAATTTA
* * *
23346715 ATATTAAATTTAATTTAAA-ATTTATCTAGATAGTATTTTATTAATTTAGTATTAATATGAG
1 ATATTAAA-TTAAATTAAATATTTATCTAGATAATATTTTATTAATTTAATATTAATATGAG
*
23346776 ATATTAAATTAAATTAAATATTTATCTATATAATATTTTATTAATTTAATATTAATAT
1 ATATTAAATTAAATTAAATATTTATCTAGATAATATTTTATTAATTTAATATTAATAT
23346834 AATTAATTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 9 0.17
61 44 0.83
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (61 bp):
ATATTAAATTAAATTAAATATTTATCTAGATAATATTTTATTAATTTAATATTAATATGAG
Found at i:23365383 original size:3 final size:3
Alignment explanation
Indices: 23365375--23365420 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
23365365 TGATCGGCAC
23365375 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23365421 CTTTTTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23367230 original size:35 final size:35
Alignment explanation
Indices: 23367184--23367253 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
23367174 AAAACTTTTT
23367184 TACTATGATAACTTTTCAAATTAATCCCCAAAATA
1 TACTATGATAACTTTTCAAATTAATCCCCAAAATA
23367219 TACTATGATAACTTTTCAAATTAATCCCCAAAATA
1 TACTATGATAACTTTTCAAATTAATCCCCAAAATA
23367254 GATTGATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.20, G:0.03, T:0.34
Consensus pattern (35 bp):
TACTATGATAACTTTTCAAATTAATCCCCAAAATA
Found at i:23367564 original size:17 final size:17
Alignment explanation
Indices: 23367544--23367596 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
23367534 TTGAATTCCA
23367544 TAGCTATTTGATCCTTC
1 TAGCTATTTGATCCTTC
* *
23367561 TAGCTA-CT-ATCC--A
1 TAGCTATTTGATCCTTC
23367574 TAGCTATTTGATCCTTC
1 TAGCTATTTGATCCTTC
23367591 TAGCTA
1 TAGCTA
23367597 CTAGAATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
13 6 0.21
14 1 0.04
15 8 0.29
16 1 0.04
17 12 0.43
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.42
Consensus pattern (17 bp):
TAGCTATTTGATCCTTC
Found at i:23367576 original size:30 final size:30
Alignment explanation
Indices: 23367540--23367599 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
23367530 ATTTTTGAAT
23367540 TCCATAGCTATTTGATCCTTCTAGCTACTA
1 TCCATAGCTATTTGATCCTTCTAGCTACTA
23367570 TCCATAGCTATTTGATCCTTCTAGCTACTA
1 TCCATAGCTATTTGATCCTTCTAGCTACTA
23367600 GAATTCAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (30 bp):
TCCATAGCTATTTGATCCTTCTAGCTACTA
Found at i:23368637 original size:15 final size:15
Alignment explanation
Indices: 23368614--23368750 Score: 91
Period size: 15 Copynumber: 8.8 Consensus size: 15
23368604 TTTATAGGTT
23368614 TTGTGGTTTTTCTTA
1 TTGTGGTTTTTCTTA
*
23368629 TTCTGGTTTTTCTGCTA
1 TTGTGGTTTTTCT--TA
** *
23368646 TTGT-GTTTATAGTTT
1 TTGTGGTTT-TTCTTA
*
23368661 TTGTGTTTTTTCTTA
1 TTGTGGTTTTTCTTA
*
23368676 TTCTGGTTTTTCTGCTA
1 TTGTGGTTTTTCT--TA
** *
23368693 TTGT-GTTTATAGTTT
1 TTGTGGTTT-TTCTTA
23368708 TTGTGGTTTTTCTTA
1 TTGTGGTTTTTCTTA
*
23368723 TTCTGGTTTTTCTTCTA
1 TTGTGGTTTTTC-T-TA
23368740 TTG-GGTTTTTC
1 TTGTGGTTTTTC
23368751 CGCTATTGTG
Statistics
Matches: 92, Mismatches: 20, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
15 50 0.54
16 24 0.26
17 18 0.20
ACGTcount: A:0.07, C:0.09, G:0.18, T:0.65
Consensus pattern (15 bp):
TTGTGGTTTTTCTTA
Found at i:23368639 original size:47 final size:47
Alignment explanation
Indices: 23368576--23368747 Score: 281
Period size: 47 Copynumber: 3.7 Consensus size: 47
23368566 TTTTACCTTA
* * * *
23368576 TTCTGATTTTGGTTTTTCTGCTATTTTGTTTATAGGTTTTGTGGTTT
1 TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGGTTT
*
23368623 TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGTTTT
1 TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGGTTT
23368670 TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGGTTT
1 TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGGTTT
* *
23368717 TTCTTATTCTGGTTTTTCTTCTATTGGGTTT
1 TTCTTATTCTGGTTTTTCTGCTATTGTGTTT
23368748 TTCCGCTATT
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.08, C:0.09, G:0.19, T:0.65
Consensus pattern (47 bp):
TTCTTATTCTGGTTTTTCTGCTATTGTGTTTATAGTTTTTGTGGTTT
Found at i:23368750 original size:63 final size:63
Alignment explanation
Indices: 23368680--23368805 Score: 209
Period size: 63 Copynumber: 2.0 Consensus size: 63
23368670 TTCTTATTCT
* * *
23368680 GGTTTTTCTGCTATTGTGTTTATAGTTTTTGT-GGTTTTTCTTATTCTGGTTTTTCTTCTATTG
1 GGTTTTTCCGCTATTGTGTTTATAGTTTTTGTAGG-TCTTCTTATTCTGGTTTTTCTGCTATTG
23368743 GGTTTTTCCGCTATTGTGTTTATAGTTTTTGTAGGTCTTCTTATTCTGGTTTTTCTGCTATTG
1 GGTTTTTCCGCTATTGTGTTTATAGTTTTTGTAGGTCTTCTTATTCTGGTTTTTCTGCTATTG
23368806 CTGTCTCTAG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 57 0.97
64 2 0.03
ACGTcount: A:0.09, C:0.11, G:0.20, T:0.60
Consensus pattern (63 bp):
GGTTTTTCCGCTATTGTGTTTATAGTTTTTGTAGGTCTTCTTATTCTGGTTTTTCTGCTATTG
Found at i:23369142 original size:41 final size:41
Alignment explanation
Indices: 23369097--23369182 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
23369087 AATTTAATTG
23369097 TCATTATAAGGTTATTTTTTTACTAAATTCAAAGACAAAAA
1 TCATTATAAGGTTATTTTTTTACTAAATTCAAAGACAAAAA
* *
23369138 TCATTATAAGGTTCTTTTTTTACTAAATTCGAAGACAAAAA
1 TCATTATAAGGTTATTTTTTTACTAAATTCAAAGACAAAAA
23369179 TCAT
1 TCAT
23369183 ACCTGATTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (41 bp):
TCATTATAAGGTTATTTTTTTACTAAATTCAAAGACAAAAA
Found at i:23370088 original size:14 final size:14
Alignment explanation
Indices: 23370069--23370095 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23370059 TAACCTTAGT
23370069 CAAACACACTCTCC
1 CAAACACACTCTCC
23370083 CAAACACACTCTC
1 CAAACACACTCTC
23370096 GACTTGCCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.48, G:0.00, T:0.15
Consensus pattern (14 bp):
CAAACACACTCTCC
Found at i:23374705 original size:13 final size:13
Alignment explanation
Indices: 23374687--23374716 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
23374677 ATTATATATA
23374687 ATAATATAATAAT
1 ATAATATAATAAT
23374700 ATAATATAATAAT
1 ATAATATAATAAT
23374713 ATAA
1 ATAA
23374717 ATTAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATATAATAAT
Found at i:23374722 original size:13 final size:14
Alignment explanation
Indices: 23374689--23374727 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
23374679 TATATATAAT
23374689 AATATAATAATAT-
1 AATATAATAATATA
23374702 AATATAATAATATA
1 AATATAATAATATA
23374716 AAT-TAAT-ATATA
1 AATATAATAATATA
23374728 TTACTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.20
13 17 0.68
14 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AATATAATAATATA
Found at i:23375301 original size:44 final size:46
Alignment explanation
Indices: 23375231--23375318 Score: 153
Period size: 44 Copynumber: 1.9 Consensus size: 46
23375221 ATTCTGACGA
23375231 GTAAATTATTATTTTATTATTATTTTAATGTTTACATAATTATACTT
1 GTAAATTATTA-TTTATTATTATTTTAATGTTTACATAATTATACTT
23375278 GTAAATTATTA-TT-TTATTATTTTAATGTTTACATAATTATA
1 GTAAATTATTATTTATTATTATTTTAATGTTTACATAATTATA
23375319 TTAAGGTCGT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
44 28 0.68
45 2 0.05
47 11 0.27
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (46 bp):
GTAAATTATTATTTATTATTATTTTAATGTTTACATAATTATACTT
Found at i:23378817 original size:23 final size:23
Alignment explanation
Indices: 23378790--23378840 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
23378780 TTTAAATTGT
*
23378790 TTTATATACCTTTCAAA-ATTCTA
1 TTTATATA-CTTTAAAATATTCTA
* *
23378813 TTTATTTATTTTAAAATATTCTA
1 TTTATATACTTTAAAATATTCTA
23378836 TTTAT
1 TTTAT
23378841 TATTCATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTATATACTTTAAAATATTCTA
Found at i:23378930 original size:33 final size:33
Alignment explanation
Indices: 23378879--23378946 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
23378869 ATGTTTTACT
* *
23378879 TTTATGTACATATGTATATTAT-TTGTTCTAAAA
1 TTTATATACATATATATATTATCTT-TTCTAAAA
* *
23378912 TTTATATATATATATATATTATCTTTTCTTAAA
1 TTTATATACATATATATATTATCTTTTCTAAAA
23378945 TT
1 TT
23378947 GTTTTACATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (33 bp):
TTTATATACATATATATATTATCTTTTCTAAAA
Found at i:23382792 original size:18 final size:18
Alignment explanation
Indices: 23382765--23382799 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23382755 CAACGCCTCT
23382765 TTTTGCATTCATCCATTC
1 TTTTGCATTCATCCATTC
* *
23382783 TTTTGTATTCATGCATT
1 TTTTGCATTCATCCATT
23382800 TGCATTACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.20, G:0.09, T:0.54
Consensus pattern (18 bp):
TTTTGCATTCATCCATTC
Found at i:23382999 original size:12 final size:12
Alignment explanation
Indices: 23382984--23383022 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
23382974 GATACAGGAG
23382984 CAGATGCAAGCA
1 CAGATGCAAGCA
23382996 CAGATGCAAGCA
1 CAGATGCAAGCA
*
23383008 CA-AGTGCAAGAA
1 CAGA-TGCAAGCA
23383020 CAG
1 CAG
23383023 TTAGCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 1 0.04
12 23 0.96
ACGTcount: A:0.44, C:0.23, G:0.26, T:0.08
Consensus pattern (12 bp):
CAGATGCAAGCA
Found at i:23389815 original size:50 final size:49
Alignment explanation
Indices: 23389707--23389836 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
23389697 CTGGTACGCA
* * * * *
23389707 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAGTCTAGTACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
23389756 TAGTAGCCTACACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTACACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
23389806 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTACACTTAGTACTACACACGTGA
23389837 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 28 0.38
50 42 0.58
51 3 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:23393717 original size:44 final size:44
Alignment explanation
Indices: 23393669--23394005 Score: 236
Period size: 44 Copynumber: 7.5 Consensus size: 44
23393659 CAACCACTAA
* * *
23393669 CCTTATCTCCCTGAAGTTGTAGTGGAATAGGTTGAAGTTACAAG
1 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAATTACAAG
* * ** *
23393713 CCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAATTACAGAT
1 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTG-AAATTACA-AG
* * * *
23393759 CC-TGTCTCTCTGAAGTTGCAGTAGAACAGG-TCAAA--ACAAG
1 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAATTACAAG
* * * *
23393799 CCTTATCTCCCTGAAGTTGCAGTGGAGCGGGCTGAAGA-TAGCAAA
1 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAA-ATTA-CAAG
* * * * * *
23393844 TCTTATTTTCCTGAAGTTGCAGTAGAACAGATTGAAGCTATGAATCACAG
1 CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAA---AT-TA-CA-AG
* * * * * * *
23393894 ATCTTATCTCTCTAAAGTTGCAGTGGAGCTGGTCGAAATTACAAA
1 -CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAATTACAAG
* * *
23393939 CCTCATCTTCCC-GAAGTTGCAGTGGAGCAGGTTAAAATTACAAG
1 CCTTATC-TCCCTGAAGTTGCAGTGGAACAGGTTGAAATTACAAG
23393983 CCTTATCTCCCTGAAGTTGCAGT
1 CCTTATCTCCCTGAAGTTGCAGT
23394006 AGAGTGGATT
Statistics
Matches: 225, Mismatches: 53, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
40 3 0.01
41 26 0.12
42 3 0.01
43 8 0.04
44 79 0.35
45 66 0.29
46 5 0.02
47 2 0.01
48 2 0.01
49 3 0.01
50 1 0.00
51 27 0.12
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
CCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAATTACAAG
Found at i:23393858 original size:86 final size:86
Alignment explanation
Indices: 23393708--23393873 Score: 228
Period size: 86 Copynumber: 1.9 Consensus size: 86
23393698 GGTTGAAGTT
*
23393708 ACAAGCCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAATTACAGATCCTGTCTCTCTGAA
1 ACAAGCCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAATTACAAATCCTGTCTCTCTGAA
23393773 GTTGCAGTAGAACAGGTCAAA
66 GTTGCAGTAGAACAGGTCAAA
* * * * * * *
23393794 ACAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCGGGCTGAAGA-TAGCAAATCTTAT-TTTCCTG
1 ACAAGCCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAATTA-CAAATCCTGTCTCT-CTG
23393857 AAGTTGCAGTAGAACAG
64 AAGTTGCAGTAGAACAG
23393874 ATTGAAGCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
85 4 0.06
86 66 0.94
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (86 bp):
ACAAGCCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTGAAAATTACAAATCCTGTCTCTCTGAA
GTTGCAGTAGAACAGGTCAAA
Found at i:23396238 original size:20 final size:21
Alignment explanation
Indices: 23396213--23396267 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
23396203 CATTTTTTAC
*
23396213 TTTATTTAT-TTTTAAAATTG
1 TTTATTTATATTTTAAAATAG
* *
23396233 TTTA-TTATCTTTTTAAATAG
1 TTTATTTATATTTTAAAATAG
*
23396253 TTTTTTTATATTTTA
1 TTTATTTATATTTTA
23396268 TTCATTTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.14
20 16 0.57
21 8 0.29
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (21 bp):
TTTATTTATATTTTAAAATAG
Found at i:23396261 original size:21 final size:21
Alignment explanation
Indices: 23396213--23396266 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
23396203 CATTTTTTAC
23396213 TTTATT-TATTTTTAAAATTG
1 TTTATTATATTTTTAAAATTG
*
23396233 TTTATTATCTTTTTAAATAGTT-
1 TTTATTATATTTTTAAA-A-TTG
23396255 TTT-TTATATTTT
1 TTTATTATATTTT
23396267 ATTCATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 6 0.21
21 17 0.59
22 4 0.14
23 2 0.07
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTATTATATTTTTAAAATTG
Found at i:23398869 original size:25 final size:25
Alignment explanation
Indices: 23398777--23398876 Score: 130
Period size: 26 Copynumber: 3.9 Consensus size: 25
23398767 ACATATTTTC
*
23398777 TCAAAATTTTATTAAGGGTAAAATCG
1 TCAAAATTTTACT-AGGGTAAAATCG
*
23398803 TCAAAATTTTATCGAGGGTAAAATCG
1 TCAAAATTTTA-CTAGGGTAAAATCG
* *
23398829 TTAAAA-TTTACCAGGGTAAAATCG
1 TCAAAATTTTACTAGGGTAAAATCG
23398853 TCAAAATTTTACTAGGGATAAAAT
1 TCAAAATTTTACTAGGG-TAAAAT
23398877 AGGGACGAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.28
25 13 0.20
26 34 0.52
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (25 bp):
TCAAAATTTTACTAGGGTAAAATCG
Found at i:23405809 original size:21 final size:21
Alignment explanation
Indices: 23405795--23405836 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
23405785 TTTTTACTTC
23405795 TGATTTTTAACTTTTTCCTCT
1 TGATTTTTAACTTTTTCCTCT
*
23405816 TTATTTTTAACTTTTTCCTCT
1 TGATTTTTAACTTTTTCCTCT
23405837 CGATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.19, G:0.02, T:0.64
Consensus pattern (21 bp):
TGATTTTTAACTTTTTCCTCT
Found at i:23406011 original size:25 final size:25
Alignment explanation
Indices: 23405993--23406044 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
23405983 AATTTTGTTT
23405993 ATTTAATTAAATATTAATTTTCAAA
1 ATTTAATTAAATATTAATTTTCAAA
23406018 ATTTAATTAAATATTAATTTTCAAA
1 ATTTAATTAAATATTAATTTTCAAA
23406043 AT
1 AT
23406045 ATTTTATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
ATTTAATTAAATATTAATTTTCAAA
Found at i:23406046 original size:15 final size:15
Alignment explanation
Indices: 23406001--23406047 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
23405991 TTATTTAATT
23406001 AAATATTAATTTTCA
1 AAATATTAATTTTCA
23406016 AAAT-TTAA--TT--
1 AAATATTAATTTTCA
23406026 AAATATTAATTTTCA
1 AAATATTAATTTTCA
23406041 AAATATT
1 AAATATT
23406048 TTATACTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
10 4 0.15
11 4 0.15
12 2 0.07
13 2 0.07
14 4 0.15
15 11 0.41
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATATTAATTTTCA
Found at i:23408669 original size:16 final size:15
Alignment explanation
Indices: 23408648--23408682 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
23408638 AGTCAATATA
23408648 TTTTTTAGAAATTCTT
1 TTTTTTAGAAATT-TT
*
23408664 TTTTTTATAAATTTT
1 TTTTTTAGAAATTTT
23408679 TTTT
1 TTTT
23408683 ACCTGAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTTTAGAAATTTT
Found at i:23409014 original size:22 final size:22
Alignment explanation
Indices: 23408959--23409020 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
23408949 TTAAAATTTA
*
23408959 TTTGATATAT-TACTTAAGATTG
1 TTTGATATATATAATT-AGATTG
* *
23408981 ATTGCA-AAATATAATTAGATTG
1 TTTG-ATATATATAATTAGATTG
23409003 TTTGATATATATATATTA
1 TTTGATATATATA-ATTA
23409021 AATTATAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
21 1 0.03
22 21 0.68
23 9 0.29
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (22 bp):
TTTGATATATATAATTAGATTG
Found at i:23419993 original size:25 final size:25
Alignment explanation
Indices: 23419959--23420011 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
23419949 ACGAGCTGTA
* *
23419959 AACGGGAAGCTCTTCCGAGCTAAAT
1 AACGGAAAGCTCGTCCGAGCTAAAT
* *
23419984 AACGGAAAGCTCGTGCGAGCTGAAT
1 AACGGAAAGCTCGTCCGAGCTAAAT
23420009 AAC
1 AAC
23420012 AGGGAGCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (25 bp):
AACGGAAAGCTCGTCCGAGCTAAAT
Found at i:23420044 original size:25 final size:25
Alignment explanation
Indices: 23420016--23420073 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
23420006 AATAACAGGG
*
23420016 AGCTCATGCAAACTAAGTATCGGGA
1 AGCTCATACAAACTAAGTATCGGGA
* * *
23420041 AGCTCATACGAGCTGAGTATCGGGA
1 AGCTCATACAAACTAAGTATCGGGA
23420066 AGCTCATA
1 AGCTCATA
23420074 AGAGCTGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
AGCTCATACAAACTAAGTATCGGGA
Found at i:23420078 original size:25 final size:25
Alignment explanation
Indices: 23420031--23420080 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
23420021 ATGCAAACTA
*
23420031 AGTATCGGGAAGCTCATACGAGCTG
1 AGTATCGGGAAGCTCATAAGAGCTG
23420056 AGTATCGGGAAGCTCATAAGAGCTG
1 AGTATCGGGAAGCTCATAAGAGCTG
23420081 TGGTGTGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (25 bp):
AGTATCGGGAAGCTCATAAGAGCTG
Found at i:23423348 original size:23 final size:21
Alignment explanation
Indices: 23423289--23423370 Score: 101
Period size: 21 Copynumber: 3.8 Consensus size: 21
23423279 GAAACATAAA
* * *
23423289 GTGCCTAAAACGACACACAAG
1 GTGCCTGATACGACACACGAG
*
23423310 GCGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
*
23423331 GTGTCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
23423352 GTGCCTGAAATACGACACA
1 GTGCCTG--ATACGACACA
23423371 TAAAGTGCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
21 42 0.81
23 10 0.19
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.13
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:23423378 original size:23 final size:22
Alignment explanation
Indices: 23423275--23423382 Score: 96
Period size: 21 Copynumber: 5.0 Consensus size: 22
23423265 CCTGATCAGT
* * *
23423275 ATACGAAACATAAAGTGCCT-A
1 ATACGACACACAAGGTGCCTGA
* *
23423296 AAACGACACACAAGGCGCCTG-
1 ATACGACACACAAGGTGCCTGA
* *
23423317 ATACGACACACGAGGTGTCTG-
1 ATACGACACACAAGGTGCCTGA
*
23423338 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAGGTGCCTG-A
* *
23423361 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAGGTGCCTGA
23423383 TCGATAAAGC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
21 52 0.73
22 1 0.01
23 18 0.25
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTGA
Found at i:23423778 original size:15 final size:15
Alignment explanation
Indices: 23423753--23423809 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
23423743 TCATATATAT
23423753 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
23423769 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
23423784 -ATAATTTCAATCAA
1 TATAAATTCAATCAA
23423798 TATAAATTCAAT
1 TATAAATTCAAT
23423810 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 13 0.34
15 21 0.55
16 4 0.11
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:23423794 original size:29 final size:27
Alignment explanation
Indices: 23423756--23423813 Score: 98
Period size: 29 Copynumber: 2.1 Consensus size: 27
23423746 TATATATTAT
23423756 ATAATTCAATCAATATAAATTCAATCAA
1 ATAATTCAATCAATATAAATTCAAT-AA
23423784 ATAATTTCAATCAATATAAATTCAATAA
1 ATAA-TTCAATCAATATAAATTCAATAA
23423812 AT
1 AT
23423814 TCATCGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (27 bp):
ATAATTCAATCAATATAAATTCAATAA
Found at i:23425081 original size:5 final size:5
Alignment explanation
Indices: 23425067--23425099 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
23425057 TCTTTAGTTT
23425067 ATATA TATATA ATATA ATATA ATATA ATATA AT
1 ATATA -ATATA ATATA ATATA ATATA ATATA AT
23425100 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:23425135 original size:8 final size:8
Alignment explanation
Indices: 23425122--23425150 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23425112 TATCTTTATT
23425122 ATATAATA
1 ATATAATA
23425130 ATATAATA
1 ATATAATA
23425138 ATATAATA
1 ATATAATA
23425146 ATATA
1 ATATA
23425151 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:23427525 original size:44 final size:44
Alignment explanation
Indices: 23427461--23427556 Score: 140
Period size: 44 Copynumber: 2.2 Consensus size: 44
23427451 GTAGGTCAAA
*
23427461 TAATATTAAAATAACCTACACTAGTC-AGAGTTTAAGTGAGAAAT
1 TAATATTAAAATAACCTACACTAATCGA-AGTTTAAGTGAGAAAT
* *
23427505 TAATATTAAAATAACTTACACTAATCGAAGTTTAAGTGGGAAAT
1 TAATATTAAAATAACCTACACTAATCGAAGTTTAAGTGAGAAAT
*
23427549 TAAAATTA
1 TAATATTA
23427557 TAATTTAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
44 46 0.98
45 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.31
Consensus pattern (44 bp):
TAATATTAAAATAACCTACACTAATCGAAGTTTAAGTGAGAAAT
Found at i:23430369 original size:15 final size:16
Alignment explanation
Indices: 23430346--23430378 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23430336 GTGAGCGTTC
*
23430346 AATCGAATCGAAT-AA
1 AATCAAATCGAATGAA
23430361 AATCAAATCGAATGAA
1 AATCAAATCGAATGAA
23430377 AA
1 AA
23430379 AATTTTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (16 bp):
AATCAAATCGAATGAA
Found at i:23430478 original size:5 final size:5
Alignment explanation
Indices: 23430468--23430508 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
23430458 GAGATGGAAT
23430468 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
23430509 ATATTTGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (5 bp):
TCGAA
Found at i:23436422 original size:26 final size:25
Alignment explanation
Indices: 23436379--23436429 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
23436369 GAAACAAGTG
*
23436379 AAATATGATATAATTGTTGTAATATTT
1 AAATATGATATAAGTGTT-T-ATATTT
*
23436406 AAATATTA-ATAAGTGTTTATATTT
1 AAATATGATATAAGTGTTTATATTT
23436430 CAATTGTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
26 8 0.36
27 7 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (25 bp):
AAATATGATATAAGTGTTTATATTT
Found at i:23441735 original size:39 final size:38
Alignment explanation
Indices: 23441662--23441736 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 38
23441652 AATTAATTAT
*
23441662 AATTTAAGTTTATATATTTGATATATCATAATATTAATG
1 AATTTAAGTTTATATATTTCATATAT-ATAATATTAATG
* *
23441701 AATTTGAGTTTATATATATTCCATATAT-TTATATTA
1 AATTTAAGTTTATATAT-TT-CATATATATAATATTA
23441737 TAATATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
39 23 0.74
40 2 0.06
41 6 0.19
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.51
Consensus pattern (38 bp):
AATTTAAGTTTATATATTTCATATATATAATATTAATG
Found at i:23442209 original size:23 final size:22
Alignment explanation
Indices: 23442173--23442215 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
23442163 TAAAAGCCTT
* *
23442173 TTAAAAATGTTAAAATTATAAA
1 TTAAAAATGATAAAAATATAAA
23442195 TTAATAAATGATAAAAATATA
1 TTAA-AAATGATAAAAATATA
23442216 TTTTGACCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (22 bp):
TTAAAAATGATAAAAATATAAA
Found at i:23448390 original size:17 final size:17
Alignment explanation
Indices: 23448368--23448401 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23448358 TATTGAGTTC
*
23448368 ACCAAAGAGTTTCTTTA
1 ACCAAAGAGCTTCTTTA
*
23448385 ACCAAATAGCTTCTTTA
1 ACCAAAGAGCTTCTTTA
23448402 CAAGCCTCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (17 bp):
ACCAAAGAGCTTCTTTA
Found at i:23451766 original size:14 final size:14
Alignment explanation
Indices: 23451749--23451776 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23451739 CTATTATTTA
23451749 TGGAAATTTGTTCT
1 TGGAAATTTGTTCT
23451763 TGGAAATTTGTTCT
1 TGGAAATTTGTTCT
23451777 GATTGTGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
TGGAAATTTGTTCT
Found at i:23469719 original size:46 final size:45
Alignment explanation
Indices: 23469667--23469782 Score: 155
Period size: 46 Copynumber: 2.5 Consensus size: 45
23469657 CCTGAGCTGA
* *
23469667 TAAACAGTAAGCTCTATTGAGCTGAAAAT-GGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCT-TTGAGCTG-AAATCGGTAAGCTCCAATGAGC
23469713 TAAACAGTAAGCTCTTTCGAGCT-AAATCGGTAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTTT-GAGCTGAAATCGGTAAGCTCCAATGAGC
23469758 TGAAACAGTAAGCTCTTATGAGCTG
1 T-AAACAGTAAGCTCTT-TGAGCTG
23469783 TGGTGAGTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
44 4 0.06
45 18 0.29
46 40 0.63
47 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (45 bp):
TAAACAGTAAGCTCTTTGAGCTGAAATCGGTAAGCTCCAATGAGC
Found at i:23469757 original size:23 final size:23
Alignment explanation
Indices: 23469659--23469782 Score: 123
Period size: 23 Copynumber: 5.3 Consensus size: 23
23469649 AAGCTCCTCC
23469659 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCTG--AAACAGTAAGCTCTAT
23469684 TGAGCTGAAA-ATGGTAAGCTCTAT
1 TGAGCTGAAACA--GTAAGCTCTAT
23469708 TGAGCT-AAACAGTAAGCTCT-T
1 TGAGCTGAAACAGTAAGCTCTAT
* * *
23469729 TCGAGCT-AAATCGGTAAGCTCCAA
1 T-GAGCTGAAA-CAGTAAGCTCTAT
23469753 TGAGCTGAAACAGTAAGCTCT-T
1 TGAGCTGAAACAGTAAGCTCTAT
23469775 ATGAGCTG
1 -TGAGCTG
23469783 TGGTGAGTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 18
0.78 0.06 0.17
Matches are distributed among these distances:
21 2 0.02
22 18 0.21
23 36 0.42
24 22 0.26
25 7 0.08
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:23473858 original size:23 final size:23
Alignment explanation
Indices: 23473824--23473870 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
23473814 ATCAGCGGTA
*
23473824 AACCTGGAAATTCTTCTGGAAAT
1 AACCTGGAAATTCTTCTAGAAAT
*
23473847 AACCTGGTAATTCTTCTAGAAAT
1 AACCTGGAAATTCTTCTAGAAAT
23473870 A
1 A
23473871 CATCCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (23 bp):
AACCTGGAAATTCTTCTAGAAAT
Found at i:23477642 original size:24 final size:25
Alignment explanation
Indices: 23477615--23477663 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
23477605 CTTTTTTTAT
*
23477615 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
* *
23477639 TAAATCAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
23477664 AAACAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:23477656 original size:25 final size:23
Alignment explanation
Indices: 23477627--23477672 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
23477617 AATAAAAAAC
*
23477627 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
23477652 TTTAAAACATAAAAACAAATA
1 TTTAAAACATAAAAACAAATA
23477673 AAAAATAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:23480360 original size:21 final size:21
Alignment explanation
Indices: 23480331--23480370 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23480321 ATTCATGTAT
*
23480331 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
*
23480352 TTTAATATATATTTATATA
1 TTTAATATATATGTATATA
23480371 AGTATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:23482146 original size:15 final size:15
Alignment explanation
Indices: 23482115--23482158 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
23482105 TGATTAAATT
*
23482115 ATAATGATAGT-ATA
1 ATAATGATAATAATA
23482129 ATAATGATAATAATA
1 ATAATGATAATAATA
*
23482144 ATAATGAGAATAATA
1 ATAATGATAATAATA
23482159 TATGTAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (15 bp):
ATAATGATAATAATA
Found at i:23482239 original size:11 final size:11
Alignment explanation
Indices: 23482212--23482257 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 11
23482202 AAAAGGTAAC
23482212 AAATAACTAAGTG
1 AAATAA-TAA-TG
23482225 AAATAATAATG
1 AAATAATAATG
23482236 AAATAATAATG
1 AAATAATAATG
23482247 ATGAATAATAA
1 A--AATAATAA
23482258 AACAGTAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 14 0.45
12 3 0.10
13 14 0.45
ACGTcount: A:0.61, C:0.02, G:0.11, T:0.26
Consensus pattern (11 bp):
AAATAATAATG
Found at i:23483904 original size:24 final size:24
Alignment explanation
Indices: 23483862--23483976 Score: 114
Period size: 23 Copynumber: 4.9 Consensus size: 24
23483852 AAGCTCCTCC
*
23483862 TGAGCTGATAAACAATAAGCTCTAT
1 TGAGCTGA-AAACAGTAAGCTCTAT
*
23483887 TGAGCTGAAAACGGTAAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
*
23483911 TGAGCTG--AACAATAAGCTCT-T
1 TGAGCTGAAAACAGTAAGCTCTAT
* * * *
23483932 TCGAGCTG-AATCGGTAAGCTCCAA
1 T-GAGCTGAAAACAGTAAGCTCTAT
23483956 TGAGCTG-AAACAGTAAGCTCT
1 TGAGCTGAAAACAGTAAGCTCT
23483977 TACGAGCTAT
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
21 2 0.03
22 17 0.23
23 26 0.35
24 22 0.29
25 8 0.11
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAT
Found at i:23483929 original size:46 final size:46
Alignment explanation
Indices: 23483862--23483984 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
23483852 AAGCTCCTCC
* *
23483862 TGAGCTGATAAACAATAAGCTCTATT-GAGCTGAAAACGGTAAGCTCTAT
1 TGAGCTG--AAACAATAAGCTCT-TTCGAGCTG-AAACGGTAAGCTCCAA
*
23483911 TGAGCTG-AACAATAAGCTCTTTCGAGCTGAATCGGTAAGCTCCAA
1 TGAGCTGAAACAATAAGCTCTTTCGAGCTGAAACGGTAAGCTCCAA
* *
23483956 TGAGCTGAAACAGTAAGCTCTTACGAGCT
1 TGAGCTGAAACAATAAGCTCTTTCGAGCT
23483985 ATGGTGAGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
45 22 0.33
46 38 0.57
49 7 0.10
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (46 bp):
TGAGCTGAAACAATAAGCTCTTTCGAGCTGAAACGGTAAGCTCCAA
Found at i:23489144 original size:7 final size:7
Alignment explanation
Indices: 23489125--23489159 Score: 61
Period size: 7 Copynumber: 4.9 Consensus size: 7
23489115 TAGAACATAC
23489125 TTTTGGAA
1 TTTTGG-A
23489133 TTTTGGA
1 TTTTGGA
23489140 TTTTGGA
1 TTTTGGA
23489147 TTTTGGA
1 TTTTGGA
23489154 TTTTGG
1 TTTTGG
23489160 TTATGTGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.14, C:0.00, G:0.29, T:0.57
Consensus pattern (7 bp):
TTTTGGA
Found at i:23494671 original size:24 final size:23
Alignment explanation
Indices: 23494623--23494674 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
23494613 TTTTTTTTGT
*
23494623 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
23494646 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
23494670 TATTA
1 TATTA
23494675 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:23494823 original size:47 final size:47
Alignment explanation
Indices: 23494642--23494859 Score: 142
Period size: 48 Copynumber: 4.5 Consensus size: 47
23494632 ATTTCTTAAT
* * * *
23494642 ATTATATTATATATATATTCTTTTA-A-TATATTAGGTATAT-TCTAA
1 ATTATATTATGTATATATT-TTTTACACTATATTATGTATATATTTTA
* * * *
23494687 ATTCTATATTACGTATATA--TATTATACTATTTTATGTATATATCTTTA
1 A-T-TATATTATGTATATATTTTTTACACTATATTATGTATATAT-TTTA
* * *
23494735 ATACTATATTATTTATATATATATTTTACATGTTATCTTATGTATATATTTTA
1 AT--TATATTATGTATATAT-T-TTTTACA--CTATATTATGTATATATTTTA
* *
23494788 ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTA
1 ATTATATTATGTATATATTTTTTACACTATATTATGTATATA-TTTTA
* * *
23494836 A-TATCATCACGTATTTATTTTTTA
1 ATTAT-ATTATGTATATATTTTTTA
23494860 TATATGTACA
Statistics
Matches: 137, Mismatches: 21, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
44 4 0.03
45 2 0.01
46 13 0.09
47 31 0.23
48 39 0.28
49 7 0.05
50 1 0.01
51 14 0.10
52 5 0.04
53 6 0.04
54 15 0.11
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (47 bp):
ATTATATTATGTATATATTTTTTACACTATATTATGTATATATTTTA
Found at i:23494831 original size:25 final size:25
Alignment explanation
Indices: 23494690--23494834 Score: 102
Period size: 25 Copynumber: 5.8 Consensus size: 25
23494680 ATTCTAAATT
* * *
23494690 CTATATTACGTATATA--TATTATA
1 CTATATTATGTATATATTTTTTACA
* * * *
23494713 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
23494738 CTATATTATTTATATATATATTTTACA
1 CTATATTATGTATATAT-T-TTTTACA
* *
23494765 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
23494789 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
23494814 CTATATTATGTACATATTTTT
1 CTATATTATGTATATATTTTT
23494835 AATATCATCA
Statistics
Matches: 96, Mismatches: 17, Indels: 16
0.74 0.13 0.12
Matches are distributed among these distances:
22 14 0.15
23 14 0.15
24 6 0.06
25 44 0.46
27 5 0.05
29 13 0.14
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:23495012 original size:16 final size:15
Alignment explanation
Indices: 23494988--23495022 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
23494978 TAATTATTAT
23494988 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
23495004 TATTTTAATATTTTA
1 TATTCTAATATTTTA
23495019 TATT
1 TATT
23495023 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:23501124 original size:44 final size:44
Alignment explanation
Indices: 23501067--23501157 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
23501057 AAAAAAGGGT
23501067 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
1 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
*
23501111 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACATAAAA
1 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
23501155 GAT
1 GAT
23501158 TAGGATAAAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (44 bp):
GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
Found at i:23501169 original size:44 final size:44
Alignment explanation
Indices: 23501067--23501181 Score: 162
Period size: 44 Copynumber: 2.6 Consensus size: 44
23501057 AAAAAAGGGT
*
23501067 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
1 GATCAAGGTAAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
* *
23501111 GATCAAGGTGAAAACCCGAAAAGGGCGTCTTGATTAACATAAAA
1 GATCAAGGTAAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
* *
23501155 GAT-TAGGATAAAAACCTG-AAAGGGCGT
1 GATCAAGG-TAAAAACCCGAAAAGGGCGT
23501182 TCTACTGAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
43 12 0.18
44 54 0.82
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.17
Consensus pattern (44 bp):
GATCAAGGTAAAAACCCGAAAAGGGCGTCTTGATTAACAAAAAA
Found at i:23502286 original size:73 final size:73
Alignment explanation
Indices: 23502048--23502288 Score: 383
Period size: 73 Copynumber: 3.3 Consensus size: 73
23502038 AATTTCCATT
* *
23502048 TTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
23502113 GCTGAGGTA
65 GCTGAGGTA
* * * *
23502122 ATTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGGCACG
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
*
23502187 CCGAGGTA
66 CTGAGGTA
* *
23502195 TTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
23502260 CTGAGGTA
66 CTGAGGTA
*
23502268 TTTTCAATTTTTGTTTTTCAA
1 TTTTCAATTTATGTTTTTCAA
23502289 TTTTTTCCTT
Statistics
Matches: 151, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
73 135 0.89
74 16 0.11
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTA
Found at i:23502500 original size:160 final size:150
Alignment explanation
Indices: 23502304--23502658 Score: 409
Period size: 160 Copynumber: 2.3 Consensus size: 150
23502294 TCCTTACAAA
* *
23502304 TTCTGCTTTTC---AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 TTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGAT
* *
23502366 ATTTTCAATTTTCGTTTTTTTAACTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAG
66 ATTTTCAA-ATTC---TATTT---TTA----TC-AAAAAAATCAACTCATATTGCGAGAAGTGAG
*
23502431 TTGAGCCTC-AAGACGCTGAGGTAATTTCAAAT
119 TTGAGCCTCGAACACGCTGAGGTAATTTC-AAT
* *
23502463 TT-TG-TTTGTC-AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAAGACACTCTGAGA
1 TTCTGCTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGA
* *
23502525 TTTTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
65 TATTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-G
* *
23502590 GACACGCTGAGGTATTTTCAAT
129 AACACGCTGAGGTAATTTCAAT
*
23502612 TTCTGCTTTTCAAAAGAATCAACTCATATTGCGATAGGTGAGTTGAG
1 TTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAG
23502659 TCTCGGGCCA
Statistics
Matches: 174, Mismatches: 13, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
148 39 0.22
149 7 0.04
150 20 0.11
151 6 0.03
152 29 0.17
153 3 0.02
156 4 0.02
157 3 0.02
158 4 0.02
159 5 0.03
160 54 0.31
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (150 bp):
TTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGAT
ATTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAA
CACGCTGAGGTAATTTCAAT
Found at i:23502569 original size:77 final size:75
Alignment explanation
Indices: 23502395--23502658 Score: 331
Period size: 77 Copynumber: 3.5 Consensus size: 75
23502385 TTAACTTATG
* *
23502395 TTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG--ACGCTGAGGTAATTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
*
23502458 CAAATT-TTGT
65 CAAATTCTTCT
* * * *
23502468 TTGTC--AAAAATCAACTCAAATTGCGAGAGGTGAGTTGAGCCTCAAGACACTCTGAGATTTTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
*
23502531 CAAATTCTATTT
65 CAAATTCT-TCT
**
23502543 TTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTT
1 TT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
* *
23502608 CAATTTCTGCT
65 CAAATTCTTCT
* *
23502619 TTTCAAAAGAATCAACTCATATTGCGATAGGTGAGTTGAG
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
23502659 TCTCGGGCCA
Statistics
Matches: 165, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
71 39 0.24
73 19 0.12
74 3 0.02
75 42 0.25
76 3 0.02
77 59 0.36
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (75 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTC
AAATTCTTCT
Found at i:23502598 original size:336 final size:334
Alignment explanation
Indices: 23501979--23502624 Score: 946
Period size: 336 Copynumber: 1.9 Consensus size: 334
23501969 TCTTTCAAAA
*
23501979 AAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAAGTCACACGCTGAGGTATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAATTTC
* *
23502044 CATTTTTTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 CATTTTTTCAACTTATGC-TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-G
* * *
23502109 ACACGCTGAGGTAATTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGCTGA
129 ACACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCAAATTGCGAGAGGTGAGCTGA
** * * *
23502174 GCCTCGGGGCACGCCGAGGTATTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
194 GCCTCAAGACACGCCGAGATATTTTTAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGG
* *
23502239 TGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTTTTCCTTACAAA
259 TGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTTCAATTTTTTCCTTACAAA
23502304 TTCTGCTTTTC
324 TTCTGCTTTTC
* *
23502315 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATTTTCAATTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAATTTC
* *
23502378 CGTTTTTTTAACTTATG-TTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-
66 CATTTTTTCAACTTATGCTTTC--AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
* *
23502441 AGACGCTGAGGTAATTTCAAATTT-TGTTTGTCAAAAATCAACTCAAATTGCGAGAGGTGAGTTG
129 ACACGCTGAGGTAATTTC-AATTTATGTTTGTCAAAAATCAACTCAAATTGCGAGAGGTGAGCTG
* * *
23502505 AGCCTCAAGACACTCTGAGAT-TTTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGC
193 AGCCTCAAGACACGCCGAGATATTTTT-AAATTCT-GTTTT-TC--AAAAATCAACTCATATTGC
23502569 GAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTATTTTCAATTTCTGCTTTTCAA
253 GAGAGGTGAGTTGAGCCTCAGGG-CACGCTGAGGTATTTTCAATTTCTGCTTTTCAA
23502625 AAGAATCAAC
Statistics
Matches: 279, Mismatches: 22, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
331 5 0.02
332 78 0.28
333 9 0.03
334 78 0.28
335 5 0.02
336 104 0.37
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (334 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACGCTGAGGTATTTTCAATTTC
CATTTTTTCAACTTATGCTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGAC
ACGCTGAGGTAATTTCAATTTATGTTTGTCAAAAATCAACTCAAATTGCGAGAGGTGAGCTGAGC
CTCAAGACACGCCGAGATATTTTTAAATTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCTTTTCAATTTTTTCCTTACAAATT
CTGCTTTTC
Found at i:23502920 original size:71 final size:71
Alignment explanation
Indices: 23502817--23502954 Score: 231
Period size: 71 Copynumber: 1.9 Consensus size: 71
23502807 CTGTTTTAAT
*
23502817 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
23502882 TTATCA
66 TTATCA
* * * *
23502888 TCAAAAGATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACTCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
23502953 TT
66 TT
23502955 CTGCTCAATC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:23503047 original size:155 final size:153
Alignment explanation
Indices: 23502711--23503263 Score: 463
Period size: 155 Copynumber: 3.6 Consensus size: 153
23502701 TTTGTTTTTT
* * * * * *
23502711 TTTTTAATTTATGTGTTTCAAAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAACCTC-A-ATA
1 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACA
* *
23502774 CGCTGAGGT-GTTTTCCATTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTG
65 CGCTGAGGTAGTTTTCAATTTC---TGTCAA-TT-TG-TTT--TT-AAAAAATCAACTCATATTG
* * * *
23502838 CGAGAGATGAGTTGAACCTCA-AGTCACATTGAGGTA
121 CGAGAGGTGAGTTGAGCCTCACA-T-GC--TGAGGTG
* ** * *
23502874 TTTTCAA-TT-T-ATCATCAAAAGATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACTC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
*
23502936 GTTGAGGTA-TTTTCAATTTCTGCTCAATCTATGTTTTTAAAAAATCAACTCATATTGCGAGAGG
66 GCTGAGGTAGTTTTCAATTTCTG-TCAAT-T-TGTTTTTAAAAAATCAACTCATATTGCGAGAGG
23503000 TGAGTTGAGCCTCACATGCTGAGGTG
128 TGAGTTGAGCCTCACATGCTGAGGTG
* * **
23503026 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGC-TTA
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC-T--CAAGA
* ** *
23503090 CACGCTGAGGTATTTTTCAATTTCTG----TTTG--TCAAAAAAATCAACTCATATCGCGAGAGG
63 CACGCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTAAAAAATCAACTCATATTGCGAGAGG
*
23503149 TGAGTTGAGCCTCGGGTCACACGCTGAGGTG
128 TGAGTTGAG-C-C---TCACATGCTGAGGTG
* * * * *
23503180 TTTTTAACTTCTGTTTTTCAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
* *
23503245 GTTAAGGTAGTTTT-AATTT
66 GCTGAGGTAGTTTTCAATTT
23503264 TTGTTCATCA
Statistics
Matches: 330, Mismatches: 41, Indels: 50
0.78 0.10 0.12
Matches are distributed among these distances:
149 35 0.11
150 1 0.00
151 9 0.03
152 29 0.09
153 4 0.01
154 68 0.21
155 76 0.23
156 4 0.01
157 11 0.03
158 19 0.06
159 43 0.13
160 3 0.01
161 20 0.06
162 2 0.01
163 6 0.02
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (153 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
GCTGAGGTAGTTTTCAATTTCTGTCAATTTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGA
GTTGAGCCTCACATGCTGAGGTG
Found at i:23503207 original size:154 final size:150
Alignment explanation
Indices: 23502974--23503334 Score: 459
Period size: 154 Copynumber: 2.4 Consensus size: 150
23502964 CTATGTTTTT
* *
23502974 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-C-C---TCACATGCTGAGGTGTTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAAC
* *
23503034 TTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-TGGCTTACACGCTGA
66 TTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG---ACACGCTAA
* **
23503098 GGTATTTTTCAATTTCTGTTTGTC
128 GGTAGTTTT-AATTTCTGTTCATC
* *
23503122 AAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTTAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAA
* * *
23503187 CTTCTGTTTTTCAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTAAGG
65 CTTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGG
*
23503252 TAGTTTTAATTTTTGTTCATC
130 TAGTTTTAATTTCTGTTCATC
* ** * *
23503273 AAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGG--GCACGCTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAA
23503335 TTAATGTTTT
Statistics
Matches: 186, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
148 17 0.09
149 34 0.18
150 39 0.21
151 12 0.06
152 15 0.08
154 67 0.36
155 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (150 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTGTTTTCAAC
TTCTGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGT
AGTTTTAATTTCTGTTCATC
Found at i:23503327 original size:74 final size:75
Alignment explanation
Indices: 23502967--23503345 Score: 459
Period size: 74 Copynumber: 5.1 Consensus size: 75
23502957 GCTCAATCTA
*
23502967 TGTTTTT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC---ACATGCTGAGGT-GT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGT
23503027 TTTCAATTTC
66 TTTCAATTTC
* * *
23503037 TGTTTTTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTA
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTA
*
23503102 TTTTTCAATTTC
64 GTTTTCAATTTC
* *
23503114 TGTTTGTCAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGT
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGT
* *
23503179 -GTTTTTAACTTC
63 AGTTTTCAATTTC
* * * *
23503191 TGTTTTTCAAAAAATCAACTCATGTTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTAAGGTAGT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGT
*
23503256 TTT-AATTTT
66 TTTCAATTTC
** * ** *
23503265 TGTTCATCAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTA-T
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGT
**
23503329 TTTCAATTAA
66 TTTCAATTTC
23503339 TGTTTTT
1 TGTTTTT
23503346 TCAATTTATG
Statistics
Matches: 263, Mismatches: 34, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
70 7 0.03
71 37 0.14
73 4 0.02
74 76 0.29
75 5 0.02
76 50 0.19
77 34 0.13
78 50 0.19
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (75 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAGT
TTTCAATTTC
Found at i:23503478 original size:87 final size:87
Alignment explanation
Indices: 23503274--23503589 Score: 309
Period size: 88 Copynumber: 3.6 Consensus size: 87
23503264 TTGTTCATCA
* * *
23503274 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAA--
* * * *
23503337 AATGTTTTTTCAATTTATGCTTTT
64 AATCTGTTTTCAAATTATGGTTTT
* * *
23503361 CAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAAA
1 -AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAA
23503426 ATCTGTTTTACAAATT-TGGTTTT
65 ATCTGTTTT-CAAATTATGGTTTT
* * * * * * * **
23503449 AAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAA
* * *
23503514 TCTGTTTT-TAATGTCTAGTTTT
66 TCTGTTTTCAAAT-TATGGTTTT
* * *
23503536 AAAGAGTCAATTCATATTGCGAGAAATGAGTTGAG-CTCAGGATCACATGCCGAG
1 AAA-AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGGTCACATGCCGAG
23503590 TAAAGAATCA
Statistics
Matches: 189, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
85 3 0.02
86 1 0.01
87 72 0.38
88 94 0.50
89 5 0.03
90 14 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTTCAAAA
TCTGTTTTCAAATTATGGTTTT
Found at i:23503565 original size:175 final size:175
Alignment explanation
Indices: 23503274--23503589 Score: 417
Period size: 175 Copynumber: 1.8 Consensus size: 175
23503264 TTGTTCATCA
* * *
23503274 AAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTAA
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
* *
23503339 TGTTTTTTCAATTTATGCTTTTCAAGAATCAACTCATATTACGAGAAATGAGTTGAGCCTC-GGG
66 TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAG-CTCAGGA
23503403 TCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTGGTTTT
130 TCACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTGGTTTT
* * * *
23503449 AAAAATCAACTTATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGCGCAC--GCTGAGCTATTTTCAATT
** * * *
23503514 TCTG-TTTTT-AATGTCTA-G-TTTTAAAGAGTCAATTCATATTGCGAGAAATGAGTTGAGCTCA
64 AATGTTTTTTCAAT-T-TATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCA
*
23503575 GGATCACATGCCGAG
127 GGATCACATACCGAG
23503590 TAAAGAATCA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
174 3 0.02
175 90 0.74
176 7 0.06
177 21 0.17
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (175 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGCGCACGCTGAGCTATTTTCAATTAA
TGTTTTTTCAATTTATGCTTTTAAAGAATCAACTCATATTACGAGAAATGAGTTGAGCTCAGGAT
CACATACCGAGGTATTTTCAAAATCTGTTTTACAAATTTGGTTTT
Found at i:23504254 original size:30 final size:30
Alignment explanation
Indices: 23504218--23504346 Score: 240
Period size: 30 Copynumber: 4.3 Consensus size: 30
23504208 CTAGCTTTTG
23504218 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23504248 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23504278 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
23504308 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23504338 CCACCACCA
1 CCACCACCA
23504347 CTTCTACCTA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 95 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:23504844 original size:23 final size:23
Alignment explanation
Indices: 23504807--23504934 Score: 84
Period size: 23 Copynumber: 5.5 Consensus size: 23
23504797 TTTTTTTTGT
*
23504807 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATACTA
* *
23504830 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATACTA
** * *
23504852 TATTAGGTATATTCTAAATTCTA
1 TATTATATATATTCTTAATACTA
*
23504875 TATTACGTATATA-TATT-ATACTA
1 TATTA--TATATATTCTTAATACTA
* *
23504898 TTTTATGTATATATCTTTAATACTA
1 TATTATATATAT-TC-TTAATACTA
*
23504923 TATTATTTATAT
1 TATTATATATAT
23504935 ATATATATTT
Statistics
Matches: 79, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
21 5 0.06
22 17 0.22
23 29 0.37
24 8 0.10
25 20 0.25
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (23 bp):
TATTATATATATTCTTAATACTA
Found at i:23504910 original size:25 final size:26
Alignment explanation
Indices: 23504882--23504940 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
23504872 CTATATTACG
*
23504882 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
23504907 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
23504932 TATATATAT
1 TATATATAT
23504941 ATTTTTACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.07
25 25 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:23504982 original size:22 final size:23
Alignment explanation
Indices: 23504936--23505018 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 23
23504926 TATTTATATA
*
23504936 TATATATTTTTACATGTTATCTTATG
1 TATATA-TTTTACA--TTATATTATG
23504962 TATATATTTTA-ATTATATTATG
1 TATATATTTTACATTATATTATG
* *
23504984 TATGTATTTTTTACACTATATTATG
1 TA--TATATTTTACATTATATTATG
*
23505009 TACATATTTT
1 TATATATTTT
23505019 TAATATTATC
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
22 11 0.22
23 6 0.12
24 9 0.18
25 17 0.35
26 6 0.12
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TATATATTTTACATTATATTATG
Found at i:23505194 original size:16 final size:15
Alignment explanation
Indices: 23505173--23505207 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
23505163 TAATTATTAT
23505173 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
23505189 TATTCTAATATTTTA
1 TATTCTAATATTTTA
23505204 TATT
1 TATT
23505208 ATTCACATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:23506163 original size:25 final size:25
Alignment explanation
Indices: 23506127--23506245 Score: 102
Period size: 25 Copynumber: 4.8 Consensus size: 25
23506117 GACACACAAC
*
23506127 AGCTCTCTTGAGCTTCCTGATACTT
1 AGCTCTCATGAGCTTCCTGATACTT
*
23506152 GGCTCTCATGAGCTT-CTCGATACTT
1 AGCTCTCATGAGCTTCCT-GATACTT
* * *
23506177 TGCT-TCCATGAGCTTCCCGATA-TAC
1 AGCTCT-CATGAGCTTCCTGATACT-T
* *
23506202 AGCTCGT-ATGAGCTTCCCGTTACTT
1 AGCTC-TCATGAGCTTCCTGATACTT
*
23506227 AGCTCACATGAGCTTCCTG
1 AGCTCTCATGAGCTTCCTG
23506246 TTATATGGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
24 4 0.05
25 69 0.91
26 2 0.03
27 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.34
Consensus pattern (25 bp):
AGCTCTCATGAGCTTCCTGATACTT
Found at i:23506257 original size:50 final size:50
Alignment explanation
Indices: 23506135--23506269 Score: 141
Period size: 50 Copynumber: 2.7 Consensus size: 50
23506125 ACAGCTCTCT
* *
23506135 TGAGCTTCCTGATACT-TGGCTC-TCATGAGCTTCTCGATACTTTGCTTCCA
1 TGAGCTTCCTGATA-TATGGCTCGT-ATGAGCTTCCCGATACTTAGCTTCCA
* ** *
23506185 TGAGCTTCCCGATATACAGCTCGTATGAGCTTCCCGTTACTTAGC-TCACA
1 TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCCGATACTTAGCTTC-CA
* * *
23506235 TGAGCTTCCTGTTATATGGCTCGGAAGAGCTTCCC
1 TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCC
23506270 ATTTACATGC
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
49 3 0.04
50 66 0.94
51 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.20, T:0.33
Consensus pattern (50 bp):
TGAGCTTCCTGATATATGGCTCGTATGAGCTTCCCGATACTTAGCTTCCA
Found at i:23507225 original size:20 final size:20
Alignment explanation
Indices: 23507200--23507239 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23507190 ATTGGGCCTT
23507200 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
23507220 GCCCATTTCAATACAGTTGG
1 GCCCATTTCAACACAGTTGG
23507240 CCAATAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:23512514 original size:10 final size:9
Alignment explanation
Indices: 23512489--23512513 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23512479 ATTTAAAAAT
23512489 ATTTTTTGA
1 ATTTTTTGA
23512498 ATTTTTTGA
1 ATTTTTTGA
23512507 ATTTTTT
1 ATTTTTT
23512514 TAAAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (9 bp):
ATTTTTTGA
Found at i:23512528 original size:19 final size:19
Alignment explanation
Indices: 23512478--23512529 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
23512468 AATTATTTTT
*
23512478 AATTTAAAAATATTTTTTGA
1 AATTTAAAAAT-TTTTTTAA
* ***
23512498 ATTTTTTGAATTTTTTTAA
1 AATTTAAAAATTTTTTTAA
23512517 AATTTAAAAATTT
1 AATTTAAAAATTT
23512530 AATTAATTAT
Statistics
Matches: 23, Mismatches: 9, Indels: 1
0.70 0.27 0.03
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (19 bp):
AATTTAAAAATTTTTTTAA
Found at i:23522305 original size:41 final size:41
Alignment explanation
Indices: 23522256--23522349 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
23522246 ATGACTTTAT
* * **
23522256 TAGG-AACATATTATTATTCCATGGGACCACTTTATGTGCA
1 TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
*
23522296 TAGGTAACATATTATTATTTCATCGGACAACTCCATGTGCA
1 TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
*
23522337 TAGGTAATATATT
1 TAGGTAACATATT
23522350 CACGGGATTG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 4 0.09
41 43 0.91
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (41 bp):
TAGGTAACATATTATTATTCCATCGGACAACTCCATGTGCA
Found at i:23525187 original size:16 final size:16
Alignment explanation
Indices: 23525168--23525203 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23525158 AGATGGTTGC
*
23525168 TATTTATTATATATAT
1 TATTTATTAAATATAT
*
23525184 TATTTATTAAATATTT
1 TATTTATTAAATATAT
23525200 TATT
1 TATT
23525204 GAGTTTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTATTAAATATAT
Found at i:23527116 original size:23 final size:23
Alignment explanation
Indices: 23527097--23527150 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
23527087 TGTATACACG
23527097 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* *
23527120 TACATAATAATAATA-ATAGTAA
1 TACATAATAAAAATATATACTAA
23527142 TAC-TAATAA
1 TACATAATAA
23527151 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:23527131 original size:3 final size:3
Alignment explanation
Indices: 23527100--23527170 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
23527090 ATACACGTAC
* * * *
23527100 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
23527147 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
23527171 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:23527652 original size:13 final size:12
Alignment explanation
Indices: 23527634--23527671 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
23527624 AAGAAAAAAA
23527634 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
23527647 GAAGAGAGAAGG
1 GAAGAGAGAAGG
23527659 G-AGAGAGAAGG
1 GAAGAGAGAAGG
23527670 GA
1 GA
23527672 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:23528612 original size:41 final size:40
Alignment explanation
Indices: 23528545--23528657 Score: 190
Period size: 41 Copynumber: 2.8 Consensus size: 40
23528535 GTGTTTTTAG
* *
23528545 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
23528585 TCTGCTCCACTAACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACT-ACTGCTTAGGGAGATAAGACTTGATGCGA
*
23528626 TCTGCTCCACTATTGCTTAGGGAGATAAGACT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT
23528658 GTAATCTTCG
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:23529038 original size:186 final size:186
Alignment explanation
Indices: 23528844--23529583 Score: 1462
Period size: 186 Copynumber: 4.0 Consensus size: 186
23528834 GAGTTATCGG
*
23528844 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCAGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
23528909 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
23528974 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
23529030 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
23529095 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
23529160 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
23529216 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
*
23529281 TCCACTGTAACTTCAGAGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
23529346 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
23529402 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
1 CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
23529467 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
66 TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
23529532 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
131 TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
23529584 GAAATTTTTT
Statistics
Matches: 551, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
186 551 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (186 bp):
CTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
TCCACTGTAACTTCAGAGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGA
TAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGA
Found at i:23529244 original size:142 final size:141
Alignment explanation
Indices: 23529098--23529367 Score: 339
Period size: 142 Copynumber: 1.9 Consensus size: 141
23529088 AATCCGCTCC
* * *
23529098 ACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCAATCTACTCCGCTGTAA-TCTCAGAGAGAT
1 ACTGTAACTTCAGAGAGATAAGATCT-CTA-CTTCAATCCACTCCACTGTAACT-TCAGAGAGAT
* * *
23529161 AAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCAATCT
63 AAGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCT
23529225 GATGTGATCTACTCT
127 GATGTGATCTACTCT
* * * * *
23529240 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* * * *
23529305 GATTACTATCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65 GATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTG
23529368 CTCCACTGTA
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 1 0.01
142 104 0.95
143 3 0.03
144 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTACTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTGATG
TGATCTACTCT
Found at i:23529430 original size:142 final size:141
Alignment explanation
Indices: 23529284--23529553 Score: 357
Period size: 142 Copynumber: 1.9 Consensus size: 141
23529274 AATCCGCTCC
* * *
23529284 ACTGTAACTTCAGAGAGATAGGAT-TACTATCTTCAATCTACTCCGCTGTAA-TCTCAGAGAGAT
1 ACTGTAACTTCAGAGAGATAAGATCT-CTAT-TTCAATCCACTCCACTGTAACT-TCAGAGAGAT
* * *
23529347 AAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCAATCT
63 AAGAT-TACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCT
23529411 GATGTGATCTACTCT
127 GATGTGATCTACTCT
* * * *
23529426 ACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGATAG
1 ACTGTAACTTCAGAGAGATAAGAT-CTCTATTTCAATCCACTCCACTGTAACTTCAGAGAGATAA
* * *
23529491 GATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTG
65 GATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTG
23529554 CTCCACTGTA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
141 1 0.01
142 105 0.95
143 4 0.04
144 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (141 bp):
ACTGTAACTTCAGAGAGATAAGATCTCTATTTCAATCCACTCCACTGTAACTTCAGAGAGATAAG
ATTACTAGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTCTGACTTCAATCTGATG
TGATCTACTCT
Found at i:23529583 original size:44 final size:44
Alignment explanation
Indices: 23528859--23529583 Score: 530
Period size: 44 Copynumber: 15.8 Consensus size: 44
23528849 ATCTGATGTG
* * * *** *
23528859 ATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTC-TGGCTTCA
* * * *
23528903 ATCAGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT-CTGGCTTCA
* * *
23528947 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *
23528991 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *** *
23529035 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATC-----TG--CT-C-C-ACTGTAACCTCAGAGAGATAAGATCTC-TGGCTTCA
* * * *
23529089 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT-CTGGCTTCA
* * *
23529133 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *
23529177 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *** *
23529221 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATC-----TG--CT-C-C-ACTGTAACCTCAGAGAGATAAGATCTC-TGGCTTCA
* * * **
23529275 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTATCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT-CTGGCTTCA
* * *
23529319 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *
23529363 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGACTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
* *** *
23529407 ATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATC-CTTTATTTTA
1 ATC-----TG--CT-C-C-ACTGTAACCTCAGAGAGATAAGATCTC-TGGCTTCA
* * * *
23529461 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT-CTGGCTTCA
* * *
23529505 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
*
23529549 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCT
23529584 GAAATTTTTT
Statistics
Matches: 547, Mismatches: 89, Indels: 90
0.75 0.12 0.12
Matches are distributed among these distances:
44 410 0.75
45 11 0.02
46 3 0.01
47 6 0.01
49 9 0.02
51 6 0.01
52 3 0.01
53 6 0.01
54 93 0.17
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGTAACCTCAGAGAGATAAGATCTCTGGCTTCA
Found at i:23541166 original size:23 final size:23
Alignment explanation
Indices: 23541147--23541200 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
23541137 TGTATACACG
23541147 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* *
23541170 TACATAATAATAATA-ATAGTAA
1 TACATAATAAAAATATATACTAA
23541192 TAC-TAATAA
1 TACATAATAA
23541201 TACTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 9 0.31
23 14 0.48
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:23541181 original size:3 final size:3
Alignment explanation
Indices: 23541150--23541220 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
23541140 ATACACGTAC
* * * *
23541150 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
23541197 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
23541221 CAAGGATATT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.62, C:0.06, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:23541703 original size:13 final size:12
Alignment explanation
Indices: 23541685--23541722 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
23541675 AAGAAAAAAA
23541685 GAAGAGAGAGAGG
1 GAAGAGAGA-AGG
23541698 GAAGAGAGAAGG
1 GAAGAGAGAAGG
23541710 G-AGAGAGAAGG
1 GAAGAGAGAAGG
23541721 GA
1 GA
23541723 GGGGGAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.46
12 4 0.17
13 9 0.38
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:23542213 original size:8 final size:8
Alignment explanation
Indices: 23542200--23542224 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23542190 GGTGTTCGGC
23542200 GCAAGTGG
1 GCAAGTGG
23542208 GCAAGTGG
1 GCAAGTGG
23542216 GCAAGTGG
1 GCAAGTGG
23542224 G
1 G
23542225 GGGTAGGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.52, T:0.12
Consensus pattern (8 bp):
GCAAGTGG
Found at i:23543300 original size:10 final size:9
Alignment explanation
Indices: 23543282--23543410 Score: 70
Period size: 9 Copynumber: 13.8 Consensus size: 9
23543272 AATTTGTAAA
23543282 AAAATATTAT
1 AAAA-ATTAT
23543292 AGAAAATTAT
1 A-AAAATTAT
23543302 AAAACAATTAT
1 -AAA-AATTAT
23543313 AAAAATTA-
1 AAAAATTAT
*
23543321 AAAAATTCT
1 AAAAATTAT
*
23543330 AAAAA-AAT
1 AAAAATTAT
23543338 AAAAATGT-T
1 AAAAAT-TAT
23543347 ATAAAA-TAT
1 A-AAAATTAT
*
23543356 AAAAGTT-T
1 AAAAATTAT
*
23543364 ACAAGAATTTT
1 A-AA-AATTAT
*
23543375 AAAAATATTT
1 AAAAAT-TAT
23543385 AGAAAATTAT
1 A-AAAATTAT
*
23543395 AAAAAGTAT
1 AAAAATTAT
*
23543404 ATAAATT
1 AAAAATT
23543411 TTAATAAAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 29
0.71 0.07 0.22
Matches are distributed among these distances:
8 19 0.20
9 32 0.34
10 27 0.28
11 17 0.18
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:23543312 original size:11 final size:10
Alignment explanation
Indices: 23543281--23543352 Score: 55
Period size: 10 Copynumber: 7.4 Consensus size: 10
23543271 AAATTTGTAA
23543281 AAAAATATTAT
1 AAAAA-ATTAT
*
23543292 AGAAAATTAT
1 AAAAAATTAT
23543302 AAAACAATTAT
1 AAAA-AATTAT
23543313 -AAAAA-T-T
1 AAAAAATTAT
*
23543320 AAAAAATTCT
1 AAAAAATTAT
23543330 AAAAAA--AT
1 AAAAAATTAT
*
23543338 AAAAATGTTAT
1 AAAAA-ATTAT
23543349 AAAA
1 AAAA
23543353 TATAAAAGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
7 1 0.02
8 12 0.24
9 3 0.06
10 18 0.36
11 16 0.32
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:23543325 original size:20 final size:21
Alignment explanation
Indices: 23543278--23543325 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
23543268 ATAAAATTTG
23543278 TAAAAAAATATTATAGAAAAT
1 TAAAAAAATATTATAGAAAAT
*
23543299 TATAAAACA-ATTATA-AAAAT
1 TA-AAAAAATATTATAGAAAAT
23543319 TAAAAAA
1 TAAAAAA
23543326 TTCTAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 7 0.29
21 8 0.33
22 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAAAAAATATTATAGAAAAT
Found at i:23543332 original size:17 final size:18
Alignment explanation
Indices: 23543287--23543334 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
23543277 GTAAAAAAAT
23543287 ATTATAGAAAATTATAAAACA
1 ATTATA-AAAA-T-TAAAACA
23543308 ATTATAAAAATTAAAA-A
1 ATTATAAAAATTAAAACA
*
23543325 ATTCTAAAAA
1 ATTATAAAAA
23543335 AATAAAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 10 0.38
18 5 0.19
19 1 0.04
20 4 0.15
21 6 0.23
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (18 bp):
ATTATAAAAATTAAAACA
Found at i:23543887 original size:16 final size:19
Alignment explanation
Indices: 23543866--23543904 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
23543856 GTTTTTAAAT
23543866 ATTTTTT-TATTT-T-ATA
1 ATTTTTTCTATTTGTAATA
23543882 ATTTTTTCTATTTGTAATA
1 ATTTTTTCTATTTGTAATA
23543901 ATTT
1 ATTT
23543905 ATATATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 1 0.05
19 7 0.35
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (19 bp):
ATTTTTTCTATTTGTAATA
Found at i:23544407 original size:11 final size:11
Alignment explanation
Indices: 23544374--23544414 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
23544364 AATGCTTAAG
23544374 TATATTTA-AT
1 TATATTTATAT
23544384 TAT-TTCATATAT
1 TATATT--TATAT
23544396 TATATTTATAT
1 TATATTTATAT
23544407 TATATTTA
1 TATATTTA
23544415 ATAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 2 0.07
10 3 0.11
11 15 0.56
12 5 0.19
13 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TATATTTATAT
Found at i:23546566 original size:131 final size:131
Alignment explanation
Indices: 23546399--23546654 Score: 440
Period size: 131 Copynumber: 2.0 Consensus size: 131
23546389 TTTAGAGAAC
* * * *
23546399 ATGAGTGAATTTCTAAAGGGATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
1 ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
23546464 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
66 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
23546529 T
131 T
* *
23546530 ATGAGTAAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGTAACCCAGCACGA
1 ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
* *
23546595 TAGGGCACGATTCCCCGAATTGCCGAACATCGAACATTGCCTTCGTTTTAAAGAATTTTT
66 TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTT
23546655 GAATGAATAA
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 117 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (131 bp):
ATGAGTAAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGA
TAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
T
Found at i:23547008 original size:13 final size:14
Alignment explanation
Indices: 23546985--23547016 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
23546975 AAACAAAACA
23546985 ATACACACAATAAT
1 ATACACACAATAAT
23546999 ATAC-CACAATAAT
1 ATACACACAATAAT
23547012 ATACA
1 ATACA
23547017 AAGCCTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (14 bp):
ATACACACAATAAT
Found at i:23548587 original size:46 final size:46
Alignment explanation
Indices: 23548527--23548960 Score: 576
Period size: 46 Copynumber: 10.0 Consensus size: 46
23548517 TTTGACATGA
* * * * * *
23548527 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
23548573 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548619 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548665 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
23548703 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
23548749 TGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548795 TGCCATGGTATCTTTCAACCATGGTCTTACAC---TC--A--A-GT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548833 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548879 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C---TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
23548917 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
23548961 AGAGCACACT
Statistics
Matches: 348, Mismatches: 15, Indels: 50
0.84 0.04 0.12
Matches are distributed among these distances:
38 102 0.29
39 1 0.00
40 6 0.02
41 5 0.01
43 5 0.01
44 6 0.02
45 5 0.01
46 218 0.63
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:23548758 original size:84 final size:79
Alignment explanation
Indices: 23548661--23548947 Score: 366
Period size: 84 Copynumber: 3.4 Consensus size: 79
23548651 ATTTCATATC
23548661 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACA-C-TCAGGTTGCCATGGTATCTTTCAACCA
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACATCATCAGGTTGCCATGGTATCTTTCAACCA
23548724 TGGTCTTACACATTTCATA
66 TGGTCTTACAC---TC--A
*
23548743 TTAGGTTGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCT
1 --AGGTTGCCATGGTATCTTTCAACCATGGTCT--TACA--TC--ATCAGGTTGCCATGGTATCT
23548808 TTCAACCATGGTCTTACACTCA
58 TTCAACCATGGTCTTACACTCA
23548830 A-GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA--TC--ATCAGGTTGCCATGGTATCTTT
23548894 CAACCATGGTCTTACACTC-
60 CAACCATGGTCTTACACTCA
23548913 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACA
23548948 CATTTCATAT
Statistics
Matches: 190, Mismatches: 2, Indels: 24
0.88 0.01 0.11
Matches are distributed among these distances:
82 3 0.02
83 1 0.01
84 140 0.74
85 1 0.01
86 3 0.02
87 1 0.01
89 3 0.02
92 38 0.20
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (79 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACATCATCAGGTTGCCATGGTATCTTTCAACCA
TGGTCTTACACTCA
Found at i:23548768 original size:130 final size:130
Alignment explanation
Indices: 23548571--23548948 Score: 637
Period size: 130 Copynumber: 3.0 Consensus size: 130
23548561 TTTCTGTCAT
*** *
23548571 GTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
23548636 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAG
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAA
*
23548701 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
*
23548766 ACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAA
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAA
23548831 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
23548896 ACCATGGTCTT--ACA---C---TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
66 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
23548949 ATTTCATATC
Statistics
Matches: 239, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
122 38 0.16
125 1 0.00
128 3 0.01
130 197 0.82
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (130 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACTCAA
Found at i:23548948 original size:84 final size:84
Alignment explanation
Indices: 23548745--23548960 Score: 414
Period size: 84 Copynumber: 2.6 Consensus size: 84
23548735 ATTTCATATT
*
23548745 AGGTTGCCATGGTATCTTTCAACCATGGTCTCACACATTTCATATCAGGTTGCCATGGTATCTTT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
23548810 CAACCATGGTCTTACACTC
66 CAACCATGGTCTTACACTC
*
23548829 AAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
23548894 CAACCATGGTCTTACACTC
66 CAACCATGGTCTTACACTC
23548913 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
23548961 AGAGCACACT
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 129 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (84 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTT
CAACCATGGTCTTACACTC
Found at i:23552590 original size:21 final size:21
Alignment explanation
Indices: 23552549--23552590 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
23552539 CGTGGCGCGT
* *
23552549 GTATGGGGGCTGTGTGCTGGC
1 GTATGGAGGCTGTGGGCTGGC
23552570 GTATGGAGGC-GTGGGCGTGGC
1 GTATGGAGGCTGTGGGC-TGGC
23552591 TGCTGAAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.07, C:0.14, G:0.55, T:0.24
Consensus pattern (21 bp):
GTATGGAGGCTGTGGGCTGGC
Found at i:23554226 original size:30 final size:30
Alignment explanation
Indices: 23554190--23554258 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
23554180 CTAGTATTTG
23554190 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
23554220 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23554250 CCACCACCA
1 CCACCACCA
23554259 CTTGTACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:23554773 original size:24 final size:23
Alignment explanation
Indices: 23554725--23554776 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
23554715 CTTTTTTTGT
*
23554725 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
23554748 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
23554772 TATTA
1 TATTA
23554777 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:23554818 original size:23 final size:24
Alignment explanation
Indices: 23554725--23554856 Score: 83
Period size: 23 Copynumber: 5.6 Consensus size: 24
23554715 CTTTTTTTGT
* * *
23554725 TATTAT-TATATTTCTTAATATTA
1 TATTATGTATATATATTAATACTA
* ** *
23554748 TATTATATATATAT-TCTTTTAATA
1 TATTATGTATATATAT-TAATACTA
* * * *
23554772 TATTAGGTATAT-TCTAAATTCTA
1 TATTATGTATATATATTAATACTA
*
23554795 TATTACGTATATATATT-ATACTA
1 TATTATGTATATATATTAATACTA
* *
23554818 TTTTATGTATATATCTTCAATACTA
1 TATTATGTATATATATT-AATACTA
*
23554843 TATTATTTATATAT
1 TATTATGTATATAT
23554857 TTTTTTCTAC
Statistics
Matches: 83, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
23 41 0.49
24 24 0.29
25 18 0.22
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.55
Consensus pattern (24 bp):
TATTATGTATATATATTAATACTA
Found at i:23554895 original size:22 final size:22
Alignment explanation
Indices: 23554870--23554936 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 22
23554860 TTTCTACATG
*
23554870 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
23554892 TTATATTATGTATATATTTTTTACA
1 TTATATTATGTATATA--TTTTA-A
* *
23554917 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
23554937 TTTATATCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 15 0.38
23 4 0.10
24 5 0.13
25 15 0.38
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:23554920 original size:77 final size:81
Alignment explanation
Indices: 23554801--23554972 Score: 199
Period size: 77 Copynumber: 2.2 Consensus size: 81
23554791 TCTATATTAC
* * * * * *
23554801 GTATATATATTATACTATTTTATGTATATATCTTCAATACTATATTATTTATATATTTTTTTCTA
1 GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATATTTTTTTATA
*
23554866 -C-ATGTTAT-CTTAT
66 TCTATGTTATACATAT
* * **
23554879 GTATATATTTTA-ATTATATTATGTATATATTTTTTACACTATATTATGTACATATTTTTTTATA
1 GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATATTTTTTTATA
*
23554943 TCTATTTTATACATAT
66 TCTATGTTATACATAT
*
23554959 GTATATATTATATA
1 GTATATATTTTATA
23554973 TATCTTAACA
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
77 43 0.56
78 12 0.16
79 6 0.08
80 15 0.19
81 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (81 bp):
GTATATATTTTATACTATATTATGTATATATCTTCAACACTATATTATGTACATATTTTTTTATA
TCTATGTTATACATAT
Found at i:23554923 original size:14 final size:13
Alignment explanation
Indices: 23554903--23554958 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
23554893 TATATTATGT
23554903 ATATATTTTTTAC
1 ATATATTTTTTAC
* *
23554916 ACTATATTATGTAC
1 A-TATATTTTTTAC
*
23554930 ATAT-TTTTTTAT
1 ATATATTTTTTAC
* *
23554942 ATCTATTTTATAC
1 ATATATTTTTTAC
23554955 ATAT
1 ATAT
23554959 GTATATATTA
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
12 8 0.25
13 13 0.41
14 11 0.34
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (13 bp):
ATATATTTTTTAC
Found at i:23554927 original size:25 final size:25
Alignment explanation
Indices: 23554792--23554938 Score: 97
Period size: 25 Copynumber: 5.9 Consensus size: 25
23554782 ATTCTAAATT
* * *
23554792 CTATATTACGTATATA--TATTATA
1 CTATATTATGTATATATTTTTTACA
* * ** *
23554815 CTATTTTATGTATATATCTTCAATA
1 CTATATTATGTATATATTTTTTACA
*
23554840 CTATATTATTTATATATTTTTTTCTACA
1 CTATATTATGTATATA--TTTTT-TACA
* *
23554868 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
*
23554892 TTATATTATGTATATATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
23554917 CTATATTATGTACATATTTTTT
1 CTATATTATGTATATATTTTTT
23554939 TATATCTATT
Statistics
Matches: 97, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
22 15 0.15
23 14 0.14
24 6 0.06
25 41 0.42
26 3 0.03
27 3 0.03
28 2 0.02
30 13 0.13
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.56
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Done.