Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 84 of 356
Found at i:26477611 original size:82 final size:81
Alignment explanation
Indices: 26477440--26477621 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
26477430 GATTAAATTG
* *
26477440 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26477505 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26477521 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26477585 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26477603 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
26477622 GCTCAATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26480654 original size:16 final size:14
Alignment explanation
Indices: 26480633--26480666 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 14
26480623 AACATTTTTT
26480633 TTATAAATGTTATATA
1 TTATAAAT-TT-TATA
26480649 TTATAAATTTTATA
1 TTATAAATTTTATA
26480663 TTAT
1 TTAT
26480667 TTTGTACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 2 0.11
16 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TTATAAATTTTATA
Found at i:26483071 original size:17 final size:17
Alignment explanation
Indices: 26483034--26483072 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26483024 CTATTAAGAT
*
26483034 AAATATTAAATCAAATC
1 AAATATTAAATCAAATA
* *
26483051 AAATATTAAATCTATTA
1 AAATATTAAATCAAATA
26483068 AAATA
1 AAATA
26483073 ATATTGTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATTAAATCAAATA
Found at i:26484507 original size:29 final size:30
Alignment explanation
Indices: 26484465--26484524 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
26484455 AAAAATGAAC
26484465 ATTAGCATTGTA-TTTTTTATATGCTTTAT
1 ATTAGCATTGTATTTTTTTATATGCTTTAT
*
26484494 ATTAGCATTGTATTTTTTTATATGTTTTAT
1 ATTAGCATTGTATTTTTTTATATGCTTTAT
26484524 A
1 A
26484525 CTTATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (30 bp):
ATTAGCATTGTATTTTTTTATATGCTTTAT
Found at i:26484906 original size:18 final size:18
Alignment explanation
Indices: 26484883--26484919 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26484873 AAAACACTAA
26484883 AATTTTAAAATTAAAACC
1 AATTTTAAAATTAAAACC
26484901 AATTTTAAAATTAAAACC
1 AATTTTAAAATTAAAACC
26484919 A
1 A
26484920 TCATGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTTTAAAATTAAAACC
Found at i:26494003 original size:16 final size:16
Alignment explanation
Indices: 26493982--26494015 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26493972 CGTTATTTGA
26493982 GCTCTGTGCCTAGCAG
1 GCTCTGTGCCTAGCAG
* *
26493998 GCTCTGTGTCTAGTAG
1 GCTCTGTGCCTAGCAG
26494014 GC
1 GC
26494016 ATTGTGCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.29
Consensus pattern (16 bp):
GCTCTGTGCCTAGCAG
Found at i:26494059 original size:38 final size:38
Alignment explanation
Indices: 26493998--26494131 Score: 153
Period size: 38 Copynumber: 3.5 Consensus size: 38
26493988 TGCCTAGCAG
* * * *
26493998 GCTCTGTGT-CTAGTAGGCATTGTGCCGATGATATTCGT
1 GCTCTGT-TCCTAGCAGGCTTTGTGCCGGTGATATTCGA
*
26494036 GCTCTGTTCCTAGCTGGCTTTGTGCCGGTGATATTCGA
1 GCTCTGTTCCTAGCAGGCTTTGTGCCGGTGATATTCGA
* * * *
26494074 GCTCTGTTCCTAGCAGGTTTTGTGCTGGTGATATTTGG
1 GCTCTGTTCCTAGCAGGCTTTGTGCCGGTGATATTCGA
* *
26494112 GCTCTGTGCCTAGAAGGCTT
1 GCTCTGTTCCTAGCAGGCTT
26494132 CGCGCCGATG
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
37 1 0.01
38 81 0.99
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37
Consensus pattern (38 bp):
GCTCTGTTCCTAGCAGGCTTTGTGCCGGTGATATTCGA
Found at i:26498026 original size:27 final size:27
Alignment explanation
Indices: 26497985--26498050 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
26497975 TAAAGTTCAA
* *
26497985 TTTGAATCAATGACTTGATTTTATGA-T
1 TTTGAAACAAAGACTTGATTTTAT-ACT
26498012 TTTGAAACAAAGACTTGATTTTATACT
1 TTTGAAACAAAGACTTGATTTTATACT
26498039 TTTGAAACAAAG
1 TTTGAAACAAAG
26498051 GCATGAGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (27 bp):
TTTGAAACAAAGACTTGATTTTATACT
Found at i:26498063 original size:27 final size:27
Alignment explanation
Indices: 26498011--26498063 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
26498001 GATTTTATGA
* * *
26498011 TTTTGAAACAAAGACTTGATTTTATAC
1 TTTTGAAACAAAGACATGAGTGTATAC
*
26498038 TTTTGAAACAAAGGCATGAGTGTATA
1 TTTTGAAACAAAGACATGAGTGTATA
26498064 AAACTGGCCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (27 bp):
TTTTGAAACAAAGACATGAGTGTATAC
Found at i:26498921 original size:27 final size:28
Alignment explanation
Indices: 26498883--26498935 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
26498873 TTTCAATTTC
26498883 AAGTCATAAAATAT-TTTGAAAACAACT
1 AAGTCATAAAATATATTTGAAAACAACT
* *
26498910 AAGTGCAT-AAATTTATTTGAACACAA
1 AAGT-CATAAAATATATTTGAAAACAA
26498936 TATCATGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (28 bp):
AAGTCATAAAATATATTTGAAAACAACT
Found at i:26504693 original size:26 final size:26
Alignment explanation
Indices: 26504662--26504730 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
26504652 CTTATGAACG
*
26504662 TCCCGA-TATATGGCTCTTTGTGAGCT
1 TCCCGATTA-ATGGCTCTTTGTGAGCC
*
26504688 TCCCGATTAAAGGCTCTTTGTGAGCC
1 TCCCGATTAATGGCTCTTTGTGAGCC
*
26504714 TCCTGATTAATGGCTCT
1 TCCCGATTAATGGCTCT
26504731 CCAGAGCTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 36 0.95
27 2 0.05
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
TCCCGATTAATGGCTCTTTGTGAGCC
Found at i:26504811 original size:25 final size:25
Alignment explanation
Indices: 26504671--26504811 Score: 99
Period size: 25 Copynumber: 5.6 Consensus size: 25
26504661 GTCCCGATAT
*
26504671 ATGGCTCTTTGTGAGCTTCCCGATTA
1 ATGGCTCTTTG-GAGCTTCCTGATTA
* *
26504697 AAGGCTCTTTGTGAGCCTCCTGATTA
1 ATGGCTCTTTG-GAGCTTCCTGATTA
*** *
26504723 ATGGCTCTCCAGAGCTACCTGA-T-
1 ATGGCTCTTTGGAGCTTCCTGATTA
* * * * *
26504746 ATGGTTCGTTAGAACTTCCCGA-TA
1 ATGGCTCTTTGGAGCTTCCTGATTA
* * *
26504770 TATGGCTATCTGAAGCTTCCTGATTA
1 -ATGGCTCTTTGGAGCTTCCTGATTA
26504796 ATGGCTCTTTGGAGCT
1 ATGGCTCTTTGGAGCT
26504812 ACCCATTATT
Statistics
Matches: 85, Mismatches: 27, Indels: 7
0.71 0.23 0.06
Matches are distributed among these distances:
23 16 0.19
24 1 0.01
25 36 0.42
26 32 0.38
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (25 bp):
ATGGCTCTTTGGAGCTTCCTGATTA
Found at i:26516232 original size:22 final size:22
Alignment explanation
Indices: 26516206--26516250 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
26516196 TTTTGAAACC
*
26516206 ATAACTTTAAATTCCAAACCTA
1 ATAACTTCAAATTCCAAACCTA
26516228 ATAACTTCAAATTCCAAACCTA
1 ATAACTTCAAATTCCAAACCTA
26516250 A
1 A
26516251 CTCGTCATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (22 bp):
ATAACTTCAAATTCCAAACCTA
Found at i:26517786 original size:19 final size:20
Alignment explanation
Indices: 26517749--26517786 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26517739 TAGTTTTTTA
*
26517749 ATTGATTTAAAAAATGTTTC
1 ATTGAGTTAAAAAATGTTTC
26517769 ATTGAGTTAAAAAA-GTTT
1 ATTGAGTTAAAAAATGTTT
26517787 AAACCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (20 bp):
ATTGAGTTAAAAAATGTTTC
Found at i:26519930 original size:15 final size:16
Alignment explanation
Indices: 26519901--26519935 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26519891 TTGTTGAGTT
26519901 TAAAAAATTACAAAGA
1 TAAAAAATTACAAAGA
26519917 TAAAAAATTA-AAAGA
1 TAAAAAATTACAAAGA
26519932 -AAAA
1 TAAAA
26519936 GAAAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (16 bp):
TAAAAAATTACAAAGA
Found at i:26523315 original size:15 final size:15
Alignment explanation
Indices: 26523295--26523325 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26523285 TGGATGCACA
26523295 TCCATCTACCTTCAC
1 TCCATCTACCTTCAC
*
26523310 TCCATCTGCCTTCAC
1 TCCATCTACCTTCAC
26523325 T
1 T
26523326 GGTAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.45, G:0.03, T:0.35
Consensus pattern (15 bp):
TCCATCTACCTTCAC
Found at i:26531285 original size:25 final size:26
Alignment explanation
Indices: 26531257--26531313 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
26531247 TGGTGTTATC
* * *
26531257 AAAAATTGGTATTTG-ATTAAAAATT
1 AAAAATTGGAATTGGAATTAAAAATG
*
26531282 AAAAA-TGGAATTGGAATTGAAAATG
1 AAAAATTGGAATTGGAATTAAAAATG
26531307 AAAAATT
1 AAAAATT
26531314 TGACTTCCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 7 0.27
25 18 0.69
26 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.32
Consensus pattern (26 bp):
AAAAATTGGAATTGGAATTAAAAATG
Found at i:26536027 original size:36 final size:36
Alignment explanation
Indices: 26535979--26536050 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
26535969 GAGTGAGACA
26535979 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
1 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
* * *
26536015 TTGAATGTGATGGGATAGGTGTAGTGGAGGTAGGTG
1 TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
26536051 GCGTATTTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (36 bp):
TTGAATGGGATGGAAAAGGTGTAGTGGAGGTAGGTG
Found at i:26539898 original size:28 final size:28
Alignment explanation
Indices: 26539866--26539933 Score: 91
Period size: 29 Copynumber: 2.4 Consensus size: 28
26539856 ATTAATTAAT
* *
26539866 TTTTTAAATTTAAAAAGTATAGAACATA
1 TTTTTAAATTTAAAAAGTATAAAAAATA
**
26539894 TTTTTAAAAAATAAAAAGTATAAAAAATA
1 TTTTT-AAATTTAAAAAGTATAAAAAATA
26539923 TTTTTAAATTT
1 TTTTTAAATTT
26539934 TTAATTTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 9 0.27
29 24 0.73
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (28 bp):
TTTTTAAATTTAAAAAGTATAAAAAATA
Found at i:26541193 original size:63 final size:63
Alignment explanation
Indices: 26541094--26541215 Score: 244
Period size: 63 Copynumber: 1.9 Consensus size: 63
26541084 TTTTTTAAAG
26541094 AAATGCTATTATAAATTATAATTAAAGGATAAGTATAATGCAAATATAAATATATTGTGGAGT
1 AAATGCTATTATAAATTATAATTAAAGGATAAGTATAATGCAAATATAAATATATTGTGGAGT
26541157 AAATGCTATTATAAATTATAATTAAAGGATAAGTATAATGCAAATATAAATATATTGTG
1 AAATGCTATTATAAATTATAATTAAAGGATAAGTATAATGCAAATATAAATATATTGTG
26541216 AAGTGTGTCT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.48, C:0.03, G:0.13, T:0.35
Consensus pattern (63 bp):
AAATGCTATTATAAATTATAATTAAAGGATAAGTATAATGCAAATATAAATATATTGTGGAGT
Found at i:26543895 original size:289 final size:289
Alignment explanation
Indices: 26543376--26543949 Score: 1085
Period size: 289 Copynumber: 2.0 Consensus size: 289
26543366 GTAGGTTACA
* *
26543376 TGATTAAAGACGATGCCAGGACATCGAAAAGCAAAAGGAAAGACAAAGTTGTCGACGAATAACTA
1 TGATTAAAGACGATGCCAGGACATCGAAAAGCAAAAGAAAAGACAAAGTTGTCAACGAATAACTA
*
26543441 ATTTGGTTTCTGCTCTGATAATTCGAGTTCATTATATATTTATATGTATATGTTCAACTCGTTAA
66 ATTTGGTTTCTGCTCTGATAATTCAAGTTCATTATATATTTATATGTATATGTTCAACTCGTTAA
26543506 ATGTTCCATAATGGTAAACTATCAGTGTGATTGTATTTGAAAGGTACGTATATACTTAATTATGT
131 ATGTTCCATAATGGTAAACTATCAGTGTGATTGTATTTGAAAGGTACGTATATACTTAATTATGT
*
26543571 GGTTTGCAATAATTGGTAAGTGATTTGTATATGTATATTGCTTGTGTGGTGATATATGATCATTA
196 GGTTTGCAATAATTGGTAAGTGATTTGTATATGTATATTGCTTGTGTAGTGATATATGATCATTA
26543636 ATCATGAATTTTCCCTATTAACGTTGTCG
261 ATCATGAATTTTCCCTATTAACGTTGTCG
26543665 TGATTAAAGACGATGCCAGGACATCGAAAAGCAAAAGAAAAGACAAAGTTGTCAACGAATAACTA
1 TGATTAAAGACGATGCCAGGACATCGAAAAGCAAAAGAAAAGACAAAGTTGTCAACGAATAACTA
26543730 ATTTGGTTTCTGCTCTGATAATTCAAGTTCATTATATATTTATATGTATATGTTCAACTCGTTAA
66 ATTTGGTTTCTGCTCTGATAATTCAAGTTCATTATATATTTATATGTATATGTTCAACTCGTTAA
* *
26543795 ATGTTCCATATTGGTAAACTATCAGTGTGATTGTATTTGAAAGGTACGTATATATTTAATTATGT
131 ATGTTCCATAATGGTAAACTATCAGTGTGATTGTATTTGAAAGGTACGTATATACTTAATTATGT
*
26543860 GGTTTGCAATAATTGGTATGTGATTTGTATATGTATATTGCTTGTGTAGTGATATATGATCATTA
196 GGTTTGCAATAATTGGTAAGTGATTTGTATATGTATATTGCTTGTGTAGTGATATATGATCATTA
26543925 ATCATGAATTTTCCCTATTAACGTT
261 ATCATGAATTTTCCCTATTAACGTT
26543950 TTCGGATAGA
Statistics
Matches: 278, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
289 278 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (289 bp):
TGATTAAAGACGATGCCAGGACATCGAAAAGCAAAAGAAAAGACAAAGTTGTCAACGAATAACTA
ATTTGGTTTCTGCTCTGATAATTCAAGTTCATTATATATTTATATGTATATGTTCAACTCGTTAA
ATGTTCCATAATGGTAAACTATCAGTGTGATTGTATTTGAAAGGTACGTATATACTTAATTATGT
GGTTTGCAATAATTGGTAAGTGATTTGTATATGTATATTGCTTGTGTAGTGATATATGATCATTA
ATCATGAATTTTCCCTATTAACGTTGTCG
Found at i:26545982 original size:39 final size:39
Alignment explanation
Indices: 26545928--26546070 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
26545918 TAATATTCGT
* *
26545928 TTGAGCA-ACTTTCAGTACAATCAGTAGGTATGGCTCAA
1 TTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCGA
* *
26545966 TTGATCATACTTTCAGTAGAATCAGTGGGTATGGCTCGA
1 TTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCGA
* *
26546005 TTGAGCATACTTTCAGGAGAATCAGTAGGTATGGCCCGA
1 TTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCGA
26546044 TTGAGCATACTTTCAGTAGAATCAGTA
1 TTGAGCATACTTTCAGTAGAATCAGTA
26546071 TCCCATTTTT
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 6 0.06
39 89 0.94
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (39 bp):
TTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCGA
Found at i:26546047 original size:78 final size:77
Alignment explanation
Indices: 26545900--26546069 Score: 234
Period size: 78 Copynumber: 2.2 Consensus size: 77
26545890 TGCGATTTTA
* * * * *
26545900 TTCAGTATAATCAGTGGGTAATATTCGTTTGAGCAACTTTCAGTACAATCAGTAGGTATGGCTCA
1 TTCAGTAGAATCAGTGGGTAATACTCGATTGAGCAACTTTCAGGACAATCAGTAGGTATGGCCCA
*
26545965 ATTGATCATACT
66 ATTGAGCATACT
* *
26545977 TTCAGTAGAATCAGTGGGT-ATGGCTCGATTGAGCATACTTTCAGGAGAATCAGTAGGTATGGCC
1 TTCAGTAGAATCAGTGGGTAAT-ACTCGATTGAGCA-ACTTTCAGGACAATCAGTAGGTATGGCC
*
26546041 CGATTGAGCATACT
64 CAATTGAGCATACT
26546055 TTCAGTAGAATCAGT
1 TTCAGTAGAATCAGT
26546070 ATCCCATTTT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
76 2 0.02
77 28 0.34
78 52 0.63
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (77 bp):
TTCAGTAGAATCAGTGGGTAATACTCGATTGAGCAACTTTCAGGACAATCAGTAGGTATGGCCCA
ATTGAGCATACT
Found at i:26548035 original size:22 final size:23
Alignment explanation
Indices: 26548009--26548053 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
26547999 TAGATAAGTT
*
26548009 GGTCTCAAGACAAT-CCCATCAA
1 GGTCTCAAGACAATGCACATCAA
26548031 GGTCTCAAGACAATGCACATCAA
1 GGTCTCAAGACAATGCACATCAA
26548054 AGCTAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.38, C:0.29, G:0.16, T:0.18
Consensus pattern (23 bp):
GGTCTCAAGACAATGCACATCAA
Found at i:26548755 original size:21 final size:22
Alignment explanation
Indices: 26548731--26548803 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 22
26548721 AAAAAAATTT
*
26548731 AATTCAAACA-AAAATACAATC
1 AATTTAAACACAAAATACAATC
26548752 AATTTAAACACATAAAT--AATC
1 AATTTAAACACA-AAATACAATC
* * *
26548773 GATTTAAACATAAGA-ACAATC
1 AATTTAAACACAAAATACAATC
26548794 AATTTAAACA
1 AATTTAAACA
26548804 TATGGACAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 2 0.05
21 36 0.84
22 1 0.02
23 4 0.09
ACGTcount: A:0.58, C:0.15, G:0.03, T:0.25
Consensus pattern (22 bp):
AATTTAAACACAAAATACAATC
Found at i:26548795 original size:42 final size:42
Alignment explanation
Indices: 26548746--26548843 Score: 133
Period size: 42 Copynumber: 2.3 Consensus size: 42
26548736 AAACAAAAAT
* *
26548746 ACAATCAATTTAAACACATAAATAATCGATTTAAACATAAGA
1 ACAATCAATTTAAACACATAAACAATCGATTTAAAAATAAGA
* **
26548788 ACAATCAATTTAAACATATGGACAATCGATTTAAAAATAAGA
1 ACAATCAATTTAAACACATAAACAATCGATTTAAAAATAAGA
* *
26548830 GCAATCGATTTAAA
1 ACAATCAATTTAAA
26548844 AGACGTTGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.27
Consensus pattern (42 bp):
ACAATCAATTTAAACACATAAACAATCGATTTAAAAATAAGA
Found at i:26548804 original size:21 final size:21
Alignment explanation
Indices: 26548746--26548843 Score: 108
Period size: 21 Copynumber: 4.7 Consensus size: 21
26548736 AAACAAAAAT
* *
26548746 ACAATCAATTTAAACACATA-A
1 ACAATCGATTTAAACATA-AGA
*
26548767 ATAATCGATTTAAACATAAGA
1 ACAATCGATTTAAACATAAGA
* * *
26548788 ACAATCAATTTAAACATATGG
1 ACAATCGATTTAAACATAAGA
*
26548809 ACAATCGATTTAAAAATAAGA
1 ACAATCGATTTAAACATAAGA
*
26548830 GCAATCGATTTAAA
1 ACAATCGATTTAAA
26548844 AGACGTTGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 1 0.02
21 63 0.98
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.27
Consensus pattern (21 bp):
ACAATCGATTTAAACATAAGA
Found at i:26554603 original size:31 final size:31
Alignment explanation
Indices: 26554568--26554630 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
26554558 TAAAAAAGAA
26554568 AAAAAATCAACAAGTAACATTTACATGTGTC
1 AAAAAATCAACAAGTAACATTTACATGTGTC
26554599 AAAAAATCAACAAGTAACATTTACATGTGTC
1 AAAAAATCAACAAGTAACATTTACATGTGTC
26554630 A
1 A
26554631 TTTTCTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (31 bp):
AAAAAATCAACAAGTAACATTTACATGTGTC
Found at i:26555979 original size:89 final size:88
Alignment explanation
Indices: 26555833--26556033 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 88
26555823 TCTCAATTTA
* * *
26555833 AAAAAAAAGAAGCAATTAAGCCTCTCCTTTTTTTGCATTCAATTGAGTACTTAAACTTTTAAAAT
1 AAAAAAAA-AAGCAATTAAGCC-CTCCTTTTTTTGCACTCAATTAAGTACTTAAACTTTCAAAAT
* *
26555898 GTATCAAAAAGACCCTCAAAC-TTT
64 GCATAAAAAAGACCCTCAAACTTTT
*
26555922 AAAAAAAAAAGCAATTAAGCCCTACCTTTTTTTTGCACTCAATTAAGTACTTGAACTTTCAAAAT
1 AAAAAAAAAAGCAATTAAGCCCT-CC-TTTTTTTGCACTCAATTAAGTACTTAAACTTTCAAAAT
** *
26555987 GCATAAAAAAGACGTTGAAACTTTT
64 GCATAAAAAAGACCCTCAAACTTTT
***
26556012 TTCAAAAAAAGCAATTAAGCCC
1 AAAAAAAAAAGCAATTAAGCCC
26556034 CTGCTTTTAT
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
87 2 0.02
88 15 0.15
89 58 0.60
90 22 0.23
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.30
Consensus pattern (88 bp):
AAAAAAAAAAGCAATTAAGCCCTCCTTTTTTTGCACTCAATTAAGTACTTAAACTTTCAAAATGC
ATAAAAAAGACCCTCAAACTTTT
Found at i:26556144 original size:27 final size:26
Alignment explanation
Indices: 26556096--26556147 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
26556086 AGCTATAAAT
*
26556096 ATTATTAAATTTTAATAAAAAATTAA
1 ATTATTAAAATTTAATAAAAAATTAA
*
26556122 ATTATTAAAAATTTATTAAAAAATTA
1 ATTATT-AAAATTTAATAAAAAATTA
26556148 GAAAAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTATTAAAATTTAATAAAAAATTAA
Found at i:26556147 original size:8 final size:9
Alignment explanation
Indices: 26556138--26556205 Score: 77
Period size: 9 Copynumber: 7.6 Consensus size: 9
26556128 AAAAATTTAT
26556138 TAAAAAAT-
1 TAAAAAATA
26556146 TAGAAAAATA
1 TA-AAAAATA
* *
26556156 TAAAAATTG
1 TAAAAAATA
26556165 TAAAAAATA
1 TAAAAAATA
26556174 TAAAAAATA
1 TAAAAAATA
*
26556183 T-ATAAATA
1 TAAAAAATA
26556191 TAAAAAAATA
1 T-AAAAAATA
26556201 TAAAA
1 TAAAA
26556206 TTTTATAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
8 9 0.18
9 32 0.64
10 9 0.18
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (9 bp):
TAAAAAATA
Found at i:26556154 original size:9 final size:8
Alignment explanation
Indices: 26556111--26556205 Score: 55
Period size: 9 Copynumber: 10.6 Consensus size: 8
26556101 TAAATTTTAA
26556111 TAAAAAAT
1 TAAAAAAT
**
26556119 TAAATTAT
1 TAAAAAAT
26556127 TAAAAATTTAT
1 TAAAAA---AT
26556138 TAAAAAAT
1 TAAAAAAT
26556146 TAGAAAAAT
1 TA-AAAAAT
*
26556155 ATAAAAATT
1 -TAAAAAAT
26556164 GTAAAAAAT
1 -TAAAAAAT
26556173 ATAAAAAAT
1 -TAAAAAAT
*
26556182 ATATAAATAT
1 -TA-AAAAAT
*
26556192 AAAAAAAT
1 TAAAAAAT
26556200 ATAAAA
1 -TAAAA
26556206 TTTTATAAAG
Statistics
Matches: 68, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
8 19 0.28
9 34 0.50
10 7 0.10
11 8 0.12
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (8 bp):
TAAAAAAT
Found at i:26556161 original size:18 final size:17
Alignment explanation
Indices: 26556111--26556197 Score: 70
Period size: 18 Copynumber: 4.9 Consensus size: 17
26556101 TAAATTTTAA
**
26556111 TAAAAAAT-TAAATTAT
1 TAAAAAATATAAAAAAT
*
26556127 TAAAAATTTATTAAAAAAT
1 TAAAAA-ATA-TAAAAAAT
*
26556146 TAGAAAAATATAAAAATT
1 TA-AAAAATATAAAAAAT
26556164 GTAAAAAATATAAAAAA-
1 -TAAAAAATATAAAAAAT
*
26556181 TATATAAATATAAAAAA
1 TA-AAAAATATAAAAAA
26556198 ATATAAAATT
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
16 8 0.14
17 14 0.24
18 20 0.34
19 12 0.21
20 4 0.07
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (17 bp):
TAAAAAATATAAAAAAT
Found at i:26556162 original size:17 final size:17
Alignment explanation
Indices: 26556140--26556196 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
26556130 AAATTTATTA
26556140 AAAAATTAGAAAAATAT
1 AAAAATTAGAAAAATAT
26556157 AAAAATT-GTAAAAAATAT
1 AAAAATTAG--AAAAATAT
* * *
26556175 AAAAAATATATAAATAT
1 AAAAATTAGAAAAATAT
26556192 AAAAA
1 AAAAA
26556197 AATATAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.03
17 19 0.56
18 14 0.41
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (17 bp):
AAAAATTAGAAAAATAT
Found at i:26556197 original size:17 final size:16
Alignment explanation
Indices: 26556169--26556204 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
26556159 AAATTGTAAA
26556169 AAATATAAAAAATATAT
1 AAATATAAAAAA-ATAT
26556186 AAATATAAAAAAATAT
1 AAATATAAAAAAATAT
26556202 AAA
1 AAA
26556205 ATTTTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATATAAAAAAATAT
Found at i:26556497 original size:8 final size:8
Alignment explanation
Indices: 26556478--26556507 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
26556468 AAATTCTATT
26556478 TTTTATAAA
1 TTTTA-AAA
26556487 TTTTAAAA
1 TTTTAAAA
26556495 TTTTAAAA
1 TTTTAAAA
26556503 TTTTA
1 TTTTA
26556508 TTAAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTAAAA
Found at i:26556511 original size:19 final size:19
Alignment explanation
Indices: 26556489--26556536 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
26556479 TTTATAAATT
26556489 TTAAAATTTTAA-AATTTTA
1 TTAAAATTTTAATAA-TTTA
26556508 TTAAAA-TTTAATAATTTA
1 TTAAAATTTTAATAATTTA
26556526 TCTAAAATTTT
1 T-TAAAATTTT
26556537 TTATTTGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 10 0.38
19 13 0.50
20 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTAAAATTTTAATAATTTA
Found at i:26556724 original size:87 final size:87
Alignment explanation
Indices: 26556575--26556746 Score: 238
Period size: 87 Copynumber: 2.0 Consensus size: 87
26556565 TAATAAGAGA
* * * *
26556575 AGGGGCGTAATTGCTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTA
1 AGGGGCGTAATTGCTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATACATTTTGAAAGCTCAAGTA
*
26556640 CCCAATTGAGT-AAAAAAAAGC
66 CCCAATCGAGTGAAAAAAAAGC
* * *
26556661 AGGGGCTTAATTGCTTTTTTTGAAGAAGTTTGAGGGCCTTTTTGATATATTTTGAAAGCTCAAGT
1 AGGGGCGTAATTGC-TTTTTTGAAAAAGTTTGAGGGCCTTTTTGATACATTTTGAAAGCTCAAGT
* *
26556726 GCTCAATCGAGTGAAAAAAAA
65 ACCCAATCGAGTGAAAAAAAA
26556747 TAAAAGGAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 13 0.18
87 53 0.72
88 8 0.11
ACGTcount: A:0.32, C:0.10, G:0.23, T:0.35
Consensus pattern (87 bp):
AGGGGCGTAATTGCTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATACATTTTGAAAGCTCAAGTA
CCCAATCGAGTGAAAAAAAAGC
Found at i:26557400 original size:3 final size:3
Alignment explanation
Indices: 26557392--26557418 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26557382 AAAAATGAAA
26557392 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
26557419 CATGCGTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26566587 original size:18 final size:18
Alignment explanation
Indices: 26566564--26566602 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
26566554 GGGTTTAGTT
26566564 CATAACTAAATAAGAAAA
1 CATAACTAAATAAGAAAA
26566582 CATAACTAAATAAGAAAA
1 CATAACTAAATAAGAAAA
26566600 CAT
1 CAT
26566603 CTCCGAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (18 bp):
CATAACTAAATAAGAAAA
Found at i:26569338 original size:72 final size:72
Alignment explanation
Indices: 26569146--26569335 Score: 258
Period size: 72 Copynumber: 2.7 Consensus size: 72
26569136 TGACTTGAAA
* * * * *
26569146 CACACGGTCAAGTCACACGCCCGTTTGCTAGGCTATGTGAGTAATTTAATTTGCATAAAATAGGT
1 CACACGGCCAAGCCACACGACCGTATGCTAGGCTGTGTGAGTAATTTAATTTGCATAAAATAGGT
*
26569211 GTAAGGT
66 GCAAGGT
* *
26569218 CACACGGCCAAGCCACACGTCCGTATGCTAGGCCGTGTGAGTAATTTAATTTGCATAAAATAGGT
1 CACACGGCCAAGCCACACGACCGTATGCTAGGCTGTGTGAGTAATTTAATTTGCATAAAATAGGT
*
26569283 GCAGGGT
66 GCAAGGT
* *
26569290 CACATGGCCAAGCCACAC-ACTGTATGCTAGGCTGTGTG-GATAATTT
1 CACACGGCCAAGCCACACGACCGTATGCTAGGCTGTGTGAG-TAATTT
26569336 TAAGCATGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
70 1 0.01
71 23 0.22
72 81 0.77
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (72 bp):
CACACGGCCAAGCCACACGACCGTATGCTAGGCTGTGTGAGTAATTTAATTTGCATAAAATAGGT
GCAAGGT
Found at i:26570373 original size:25 final size:25
Alignment explanation
Indices: 26570341--26570461 Score: 111
Period size: 25 Copynumber: 4.8 Consensus size: 25
26570331 GAAACTCTTT
26570341 CGAGCCATATAACAGGAAGCTTATG
1 CGAGCCATATAACAGGAAGCTTATG
* * * *
26570366 CGAACCATGTAACAAGAAGCTTATA
1 CGAGCCATATAACAGGAAGCTTATG
* *
26570391 CGAGCCATGTAAC-GCGAAGCTCTTTG
1 CGAGCCATATAACAG-GAAGCT-TATG
*
26570417 -GAGCCATATAACAGGAAGCTCATG
1 CGAGCCATATAACAGGAAGCTTATG
** * *
26570441 TAAGCCATGTAACGGGAAGCT
1 CGAGCCATATAACAGGAAGCT
26570462 CTGGAGAGCC
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.03
25 73 0.94
26 3 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (25 bp):
CGAGCCATATAACAGGAAGCTTATG
Found at i:26570462 original size:25 final size:24
Alignment explanation
Indices: 26570393--26570486 Score: 91
Period size: 25 Copynumber: 3.8 Consensus size: 24
26570383 AGCTTATACG
* * *
26570393 AGCCATGTAACGCGAAGCTCTTTGG
1 AGCCATGTAACGGGAAGCTCTGT-A
* *
26570418 AGCCATATAACAGGAAGCTCATGTA
1 AGCCATGTAACGGGAAGCTC-TGTA
*
26570443 AGCCATGTAACGGGAAGCTCTGGA
1 AGCCATGTAACGGGAAGCTCTGTA
*
26570467 GAGCCAT-TATCGGGAAGCTC
1 -AGCCATGTAACGGGAAGCTC
26570487 ATACGAGCCA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 15 0.26
25 41 0.71
26 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (24 bp):
AGCCATGTAACGGGAAGCTCTGTA
Found at i:26570471 original size:50 final size:49
Alignment explanation
Indices: 26570393--26570488 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 49
26570383 AGCTTATACG
*
26570393 AGCCATGTAACGCGAAGCTCTTTGGAGCCATATAACAGGAAGCTCATGTA
1 AGCCATGTAACGCGAAGCTCTTGGGAGCCAT-TAACAGGAAGCTCATGTA
* * *
26570443 AGCCATGTAACGGGAAGCTC-TGGAGAGCCATTATCGGGAAGCTCAT
1 AGCCATGTAACGCGAAGCTCTTGG-GAGCCATTAACAGGAAGCTCAT
26570489 ACGAGCCAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
49 15 0.37
50 26 0.63
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (49 bp):
AGCCATGTAACGCGAAGCTCTTGGGAGCCATTAACAGGAAGCTCATGTA
Found at i:26570471 original size:75 final size:74
Alignment explanation
Indices: 26570326--26570496 Score: 184
Period size: 75 Copynumber: 2.3 Consensus size: 74
26570316 TGAGTACATA
* * *
26570326 AACGAGAAACTCTTTCGAGCCATATAACAGGAAGCTTATGCGAACCATGTAACAAGAAGCTTATA
1 AACGAGAAGCTCTTTCGAGCCATATAACAGGAAGCTCATGCGAACCATGTAACAAGAAGCTTAGA
26570391 CGAGCCATGT
66 CGAGCCAT-T
* * * ** *
26570401 AACGCGAAGCTCTTTGGAGCCATATAACAGGAAGCTCATG-TAAGCCATGTAACGGGAAGCTCTG
1 AACGAGAAGCTCTTTCGAGCCATATAACAGGAAGCTCATGCGAA-CCATGTAACAAGAAGCT-TA
26570465 GA-GAGCCATT
64 GACGAGCCATT
* * * *
26570475 ATCGGGAAGCTCATACGAGCCA
1 AACGAGAAGCTCTTTCGAGCCA
26570497 ATGTCGGGAA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
74 20 0.25
75 58 0.73
76 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (74 bp):
AACGAGAAGCTCTTTCGAGCCATATAACAGGAAGCTCATGCGAACCATGTAACAAGAAGCTTAGA
CGAGCCATT
Found at i:26570485 original size:24 final size:25
Alignment explanation
Indices: 26570430--26570606 Score: 105
Period size: 24 Copynumber: 7.1 Consensus size: 25
26570420 CCATATAACA
* *
26570430 GGAAGCTCATGTA-AGCCATGTAACG
1 GGAAGCTCATGAAGAGCCAT-TATCG
*
26570455 GGAAGCTC-TGGAGAGCCATTATCG
1 GGAAGCTCATGAAGAGCCATTATCG
* * *
26570479 GGAAGCTCAT-ACGAGCCAATGTCG
1 GGAAGCTCATGAAGAGCCATTATCG
* * * *
26570503 GGAAGGT--TCAAGCATGCTAATATCG
1 GGAAGCTCATGAAG-A-GCCATTATCG
* * * *
26570528 AGAAGCTC-TGGAGAGCCATTAACA
1 GGAAGCTCATGAAGAGCCATTATCG
** *
26570552 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCATGAAGAGCCATT-ATCG
*
26570578 GGAAGCTCACGAAGAGCCATATATCG
1 GGAAGCTCATGAAGAGCCAT-TATCG
26570604 GGA
1 GGA
26570607 TCCTCGTAAG
Statistics
Matches: 116, Mismatches: 27, Indels: 17
0.73 0.17 0.11
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 45 0.39
25 37 0.32
26 30 0.26
27 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (25 bp):
GGAAGCTCATGAAGAGCCATTATCG
Found at i:26570574 original size:25 final size:26
Alignment explanation
Indices: 26570539--26570597 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
26570529 GAAGCTCTGG
26570539 AGAGCCATTAA-CAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
26570564 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
26570590 AGAGCCAT
1 AGAGCCAT
26570598 ATATCGGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 10 0.34
26 19 0.66
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:26575688 original size:40 final size:40
Alignment explanation
Indices: 26575641--26575721 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
26575631 AAGTGCTACA
26575641 TATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAAC
1 TATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAAC
26575681 TATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAAC
1 TATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAAC
26575721 T
1 T
26575722 CGAACTCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (40 bp):
TATGTAGCCAAGCTACCATGTAACCCGCCCATAAGTGAAC
Found at i:26579004 original size:13 final size:13
Alignment explanation
Indices: 26578945--26579030 Score: 50
Period size: 13 Copynumber: 6.4 Consensus size: 13
26578935 TACTTATATT
*
26578945 ATAAGTAAATAATA
1 ATAAATAAATAA-A
* *
26578959 AT-AATTACTAAA
1 ATAAATAAATAAA
*
26578971 ATATAAT-AATATA
1 ATA-AATAAATAAA
**
26578984 ATATAATAGTTAAA
1 ATA-AATAAATAAA
26578998 ATAAATAAATAAA
1 ATAAATAAATAAA
*
26579011 ATAAAAAGAAATAAA
1 AT--AAATAAATAAA
26579026 ATAAA
1 ATAAA
26579031 GAAAAAGGAA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
12 3 0.05
13 30 0.54
14 11 0.20
15 12 0.21
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (13 bp):
ATAAATAAATAAA
Found at i:26579035 original size:19 final size:19
Alignment explanation
Indices: 26578995--26579037 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
26578985 TATAATAGTT
* *
26578995 AAAATAAATAAATAAAATA
1 AAAAGAAATAAATAAAAGA
26579014 AAAAGAAATAAA-ATAAAGA
1 AAAAGAAATAAATA-AAAGA
26579033 AAAAG
1 AAAAG
26579038 GAAAGAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAGAAATAAATAAAAGA
Found at i:26581669 original size:91 final size:92
Alignment explanation
Indices: 26581530--26581705 Score: 239
Period size: 91 Copynumber: 1.9 Consensus size: 92
26581520 TTTGACATGA
* * * * *
26581530 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAAC
**
26581595 CACGGTCTTATTCATTTCATGTCACGC
66 CACGGTCTTACACATTTCATGTCACGC
* *
26581622 TGCCATGGTATCTTTCAACCATGG-CTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTTAA
1 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCTTTCAA
*
26581685 CCATGGTCTTACACATTTCAT
65 CCACGGTCTTACACATTTCAT
26581706 ATCAGAGAGT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
90 4 0.05
91 48 0.66
92 21 0.29
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAAC
CACGGTCTTACACATTTCATGTCACGC
Found at i:26581671 original size:45 final size:46
Alignment explanation
Indices: 26581530--26581710 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
26581520 TTTGACATGA
* * * * * *
26581530 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
26581576 TGCCATGGTATCTTTCAACCACGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
26581622 TGCCATGGTATCTTTCAACCATGG-CTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
26581667 TGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
26581711 AGAGTACACT
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 43 0.36
46 76 0.64
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:26583661 original size:18 final size:17
Alignment explanation
Indices: 26583640--26583676 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
26583630 ACACCTTTGA
26583640 TTTCCCTTTTTTCTTTCT
1 TTTCCC-TTTTTCTTTCT
*
26583658 TTTCTCTTTTTCTTTCT
1 TTTCCCTTTTTCTTTCT
26583675 TT
1 TT
26583677 CCTTCCCCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCCCTTTTTCTTTCT
Found at i:26601855 original size:29 final size:30
Alignment explanation
Indices: 26601808--26601876 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
26601798 TGGCCCAAGA
* * *
26601808 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TGAAAAGTTGAAGGACTAATAGT
26601838 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATGAAAAGTTGAAGGACTAATAGT
*
26601868 GCAAATATG
1 GTAAATATG
26601877 TTAAGGGTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.47
30 18 0.53
ACGTcount: A:0.46, C:0.06, G:0.20, T:0.28
Consensus pattern (30 bp):
GTAAATATGAAAAGTTGAAGGACTAATAGT
Found at i:26601876 original size:30 final size:29
Alignment explanation
Indices: 26601818--26601876 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
26601808 GTAAATACTC
* * *
26601818 AAAATTTGAAGGATTAAAGTGTAAATATG
1 AAAAGTTGAAGGACTAAAGTGCAAATATG
26601847 AAAAGTTGAAGGACTAATAGTGCAAATATG
1 AAAAGTTGAAGGACTAA-AGTGCAAATATG
26601877 TTAAGGGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.27
Consensus pattern (29 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATG
Found at i:26604299 original size:46 final size:46
Alignment explanation
Indices: 26604239--26604604 Score: 608
Period size: 46 Copynumber: 8.0 Consensus size: 46
26604229 AGTGTGCTCT
* *
26604239 CTGAAATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26604285 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26604331 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26604377 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
26604423 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26604469 CTGATATGAAATGTGTAAGACCATGCTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
26604515 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
26604561 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
26604605 TCATGTCAAA
Statistics
Matches: 303, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 302 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:26607970 original size:65 final size:65
Alignment explanation
Indices: 26607848--26607971 Score: 142
Period size: 65 Copynumber: 1.9 Consensus size: 65
26607838 AGTATCTCCT
* ** *
26607848 TAAGTATCACACGGCCATAACACATAGGCGTGTTATGTGGCCGTGGGCTTAATTCAGTAGCTGGC
1 TAAGTATCACACGGCCATAACACACAGGCGTGTTATGTGGCCGTGGGCAAAAGTCAGTAGCTGGC
* * * * * *
26607913 TAAGTATCACATGGCCATAGCACACGGGCGTG-TCTGTTGGTCGTGGGGAAAAGTCAGTA
1 TAAGTATCACACGGCCATAACACACAGGCGTGTTATG-TGGCCGTGGGCAAAAGTCAGTA
26607972 TGCATGCTCT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
64 3 0.06
65 45 0.94
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (65 bp):
TAAGTATCACACGGCCATAACACACAGGCGTGTTATGTGGCCGTGGGCAAAAGTCAGTAGCTGGC
Found at i:26609564 original size:43 final size:42
Alignment explanation
Indices: 26609517--26609614 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 42
26609507 CCTAGACGTA
**
26609517 GTCTTACATGTAATTGAATATCGATGCC-ACTGTCCCAGACAGG
1 GTCTTACATGTAATCAAATA-CGATGCCGA-TGTCCCAGACAGG
* * *
26609560 GTCTTACACGAAATCAAATACGATGCCGATGTCCCAGACATG
1 GTCTTACATGTAATCAAATACGATGCCGATGTCCCAGACAGG
26609602 GTCTTACATGTAA
1 GTCTTACATGTAA
26609615 ATCATAAGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
42 30 0.64
43 17 0.36
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCTTACATGTAATCAAATACGATGCCGATGTCCCAGACAGG
Found at i:26612971 original size:44 final size:44
Alignment explanation
Indices: 26612809--26614117 Score: 361
Period size: 44 Copynumber: 28.8 Consensus size: 44
26612799 CATCGTGGTG
* * * * *
26612809 AATCTTATCTCCTGAAA-TTGTAGTGGAGCAGATTAAAGCCA-C
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * *
26612851 AATCTTATCTCCTTGAAGTTGCAGTTGAGCT-GATTAAAGATAGCA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAG-TAGATTAAAGCTA-TA
* ** *
26612896 AATCTTATC-CCTCTGAAGTTATAGTAGAGTAGATTAAAGCTATA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * *
26612940 AACCTTATCTCCTTAAAGTTGCAGTGCAGTAGGTTGAAGTTA-A
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * *
26612983 AAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAA--TATA
1 AA-TCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26613026 CGAATCTTATTTCCCTAAAGTTGCAATGGAATGGATTAATGCTACAAGTTA
1 --AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT---A--TA
* * * * * *
26613077 CAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACA
1 -AA-TCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT-ATA
* * * *
26613124 AATCTTATCT-CTCTAAAGTTGCAATAGAGCATATTAAAGCTATA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * ***
26613168 AACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAAGATGCG
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26613212 AATCTTATTTTCC-TGATGTTACAGTGGAGTATG-TTGAAGTTATA
1 AATCTTA-TCTCCTTAAAGTTGCAGTGGAGTA-GATTAAAGCTATA
* * * * * ** * * ** *
26613256 AGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAATATAACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT-ATA
* * ** * * *
26613301 AATCTTATCT-CTCTGAAGTTGTAGTAAAGCAGCTTAAAGTTATA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26613345 AACCTTACCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAA-TTACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATT-AAAGCTATA
* ** * * * * * *
26613389 AGTCTTATCTCCCAAAAATTGCAGTGGAGCAGACTGAAGATATCG
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTAT-A
* * * ** *
26613434 AATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAAGCTACAAATTACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT----A-T--A
* * * * * * *
26613485 AATCTTATCTTCC-TGAAGTTGCAATGGAGCATATTGAAGTTACA
1 AATCTTATC-TCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * ** * *
26613529 GATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGATAGCA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTA-TA
* ** * * * *
26613574 AATCTTATCT-CTCTAAAGTTGTAGTAAAGCAGATTGAACCTACA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26613618 AATCTTATCTCCCTGAAGTTACAGTGGAGCATATTAAAACTACT-
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTA-TA
* * * * *
26613662 AATCTTATCTCCCTAAAGTTGCAATGGAGTAGATTGAAGCGACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26613706 AGTCCTAT-ACCTCTAAAGTTGCAGT-AAGTCAGATTAGATCTACCATA
1 AATCTTATCTCCT-TAAAGTTGCAGTGGAGT-AGATTAAAGCT---ATA
* * * *
26613753 GCAAGTCTTATCACCCTAAAGTTGCAGTGGAATAGACTAAAGCTTAAAGTCATA
1 --AA-TCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGC------T-ATA
* * ** *
26613807 AATCTTATCTCCTTAAAGTTGTAGTAGAACATATTAAAGCTCCAAGTTACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT---A--T--A
* * * *
26613858 AATCTTATCTCCCTAAAGATGCAGTGGAGTAGATTGAAA-ATACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATT-AAAGCTATA
* ** * * * **
26613902 AATCTTATCTCCTTGAAGTAACAGTGGAGCAGATTGAAGATGCA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * *
26613946 AATCTTATTTCCTTAAAGTTTCAGTGGAATGGATTAATGCTACAAGTTACA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCT---A--T--A
* * * * ***
26613997 AATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGAAGATGCG
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
* * * * * *
26614041 AATCTTATTTCCCTGAACTTGCAGTGGAGCAGATTGAAGCTACT-
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTA-TA
* * *
26614085 AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGA
1 AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGA
26614118 CTGAAGCGAC
Statistics
Matches: 940, Mismatches: 251, Indels: 150
0.70 0.19 0.11
Matches are distributed among these distances:
42 17 0.02
43 38 0.04
44 491 0.52
45 172 0.18
46 3 0.00
47 5 0.01
48 1 0.00
49 6 0.01
50 27 0.03
51 167 0.18
52 8 0.01
54 4 0.00
56 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCTATA
Found at i:26613091 original size:95 final size:96
Alignment explanation
Indices: 26612976--26613148 Score: 285
Period size: 95 Copynumber: 1.8 Consensus size: 96
26612966 CAGTAGGTTG
* * * *
26612976 AAGTTAAAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAATAT-ACGAATCTTATTTCC
1 AAGTTAAAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCC
26613040 CTAAAGTTGCAATGGAATGGATTAATGCTAC
66 CTAAAGTTGCAATGGAATGGATTAATGCTAC
* *
26613071 AAGTTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCT
1 AAGTTAAAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCC
26613136 CTAAAGTTGCAAT
66 CTAAAGTTGCAAT
26613149 AGAGCATATT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
95 46 0.65
96 25 0.35
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (96 bp):
AAGTTAAAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCC
CTAAAGTTGCAATGGAATGGATTAATGCTAC
Found at i:26613175 original size:140 final size:138
Alignment explanation
Indices: 26612943--26613195 Score: 328
Period size: 140 Copynumber: 1.8 Consensus size: 138
26612933 AGCTATAAAC
* * * * * * *
26612943 CTTATCTCCTTAAAGTTGCAGTGCAGTAGGTTGAAGTTAAAAGTCTTATCTCCCTGAAGTTGCAA
1 CTTATCTCCCTAAAGTTGCAATGCAGCAGATTGAAGATAAAAATCTTATCTCCCTAAAGTTGCAA
* * * *
26613008 TGGAGCAGATTGAATATACGAATCTTATTTCCCTAAAGTTGCAATGGAATGGATTAATGCTACAA
66 TAGAGCAGATTAAATATAC-AACCTTATCTCCCTAAAGTTGCAATGGAATGGATTAATGCTACAA
26613073 GTTACAAGT
130 GTTACAAGT
* *
26613082 CTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCTCTAAAGTTGCA
1 CTTATCTCCCTAAAGTTGCAATGCAGCAGATTGAAGATAA-AAATCTTATCTCCCTAAAGTTGCA
* *
26613147 ATAGAGCATATTAAAGCTATA-AACCTTATCTCCCTAAAGTTGCAGTGGA
65 ATAGAGCAGATTAAA--TATACAACCTTATCTCCCTAAAGTTGCAATGGA
26613196 GTAGGTTAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
139 34 0.35
140 58 0.60
142 4 0.04
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (138 bp):
CTTATCTCCCTAAAGTTGCAATGCAGCAGATTGAAGATAAAAATCTTATCTCCCTAAAGTTGCAA
TAGAGCAGATTAAATATACAACCTTATCTCCCTAAAGTTGCAATGGAATGGATTAATGCTACAAG
TTACAAGT
Found at i:26613196 original size:89 final size:89
Alignment explanation
Indices: 26613071--26614123 Score: 476
Period size: 88 Copynumber: 11.5 Consensus size: 89
26613061 TTAATGCTAC
* * *
26613071 AAGTTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCT
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * *
26613136 CTAAAGTTGCAATAGAGCATATTA
66 CTAAAGTTGCAGTAGAGCAGATTG
* * * * * * * *
26613160 AAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAAGAT-GCGAATCTTAT-TTT
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * * * *
26613223 CCTGATGTTACAGTGGAGTATG-TTG
66 -CTAAAGTTGCAGTAGAGCA-GATTG
* * * * * * *
26613248 AAGTTATAAGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAATATAACAAATCTTATCTCT
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * * * *
26613313 CTGAAGTTGTAGTAAAGCAGCTTA
66 CTAAAGTTGCAGTAGAGCAGATTG
* * * * * * *
26613337 AAGTTATAAACCTTACCTCCTTAAAGTTGCAGTGGAGCAGGTTGAA-ATTACAAGTCTTATCTCC
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * * *
26613401 CAAAAATTGCAGTGGAGCAGACTG
66 CTAAAGTTGCAGTAGAGCAGATTG
* * * * * * * *
26613425 AAGATATCGAATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAAGCTACAAATTACAAATCT
1 AAGTTAT-AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT---G--A-AGATAACAAATCT
* * * *
26613490 TATCT-TCCTGAAGTTGCAATGGAGCATATTG
59 TATCTCT-CTAAAGTTGCAGTAGAGCAGATTG
* * * * * * *
26613521 AAGTTACAGATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCT
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* *
26613586 CTAAAGTTGTAGTAAAGCAGATTG
66 CTAAAGTTGCAGTAGAGCAGATTG
** * * * * * *
26613610 AACCTACAAATCTTATCTCCCTGAAGTTACAGTGGAGCATATT-AAAACT-ACTAATCTTATCTC
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGA-TAACAAATCTTATCTC
* * * *
26613673 CCTAAAGTTGCAATGGAGTAGATTG
65 TCTAAAGTTGCAGTAGAGCAGATTG
** * * * * * * * *
26613698 AAGCGACAAGTCCTATAC-CTCTAAAGTTGCAGT-AAGTCAGATTAGATCTACCATAGCAAGTCT
1 AAGTTATAAATCTTAT-CTCCCTAAAGTTGCAGTGGAG-CAGATT-GA---A-GATAACAAATCT
* * * * *
26613761 TATCACCCTAAAGTTGCAGTGGAATAGACTAAAGCTTA
59 TATCTCTCTAAAGTTGCAGT---AGAG-C---AGATTG
* * * * * * * *
26613799 AAGTCATAAATCTTATCTCCTTAAAGTTGTAGTAGAACATATTAAAGCTCCAAGTTACAAATCTT
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-----A-TAACAAATCTT
* * * *
26613864 ATCTCCCTAAAGATGCAGTGGAGTAGATTG
60 ATCTCTCTAAAGTTGCAGTAGAGCAGATTG
** * * * ** * *
26613894 AAAATACAAATCTTATCTCCTTGAAGTAACAGTGGAGCAGATTGAAGAT-GCAAATCTTATTTC-
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * * * *
26613957 CTTAAAGTTTCAGTGGAATGGATTAATGCTAC
66 C-TAAAGTTGCAGTAG-A-GCA--GAT--T-G
* * * * * * *
26613989 AAGTTACAAATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGAAGAT-GCGAATCTTATTTCC
1 AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
* * *
26614053 CTGAACTTGCAGTGGAGCAGATTG
66 CTAAAGTTGCAGTAGAGCAGATTG
* * * * *
26614077 AAGCTACT-AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAG
1 AAGTTA-TAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG
26614124 CGACAATTCC
Statistics
Matches: 716, Mismatches: 198, Indels: 101
0.71 0.20 0.10
Matches are distributed among these distances:
87 5 0.01
88 225 0.31
89 201 0.28
90 8 0.01
91 2 0.00
92 4 0.01
93 4 0.01
94 27 0.04
95 135 0.19
96 39 0.05
97 3 0.00
99 2 0.00
100 2 0.00
101 33 0.05
102 26 0.04
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (89 bp):
AAGTTATAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTCT
CTAAAGTTGCAGTAGAGCAGATTG
Found at i:26613271 original size:228 final size:226
Alignment explanation
Indices: 26612849--26613284 Score: 527
Period size: 228 Copynumber: 1.9 Consensus size: 226
26612839 GATTAAAGCC
* * * * * * *
26612849 ACAATCTTATCTCCTTGAAGTTGCAGTTGAGCTGATTAAAGATAGCAAATCTTATCCCTCTGAAG
1 ACAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGATAACAAATCTTATCCCTCTAAAG
* * * * *
26612914 TTATAGTAGAGTAGATTAAAGCTATAAACCTTATCTCCTTAAAGTTGCAGTGCAGTAGGTTGAAG
66 TTACAATAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGCAGTAGGTTAAAG
* * *
26612979 TTAAAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAATATACGAATCTTATTTCCCTAA
131 TGAAAAGTCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAATATAC-AATCTTATCTCCCTAA
* *
26613044 AGTTGCAATGGAATGGATTAATGCTACAAGTT
195 AATTACAATGGAATGGATTAATGCTACAAGTT
* *
26613076 ACAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCTCTAAA
1 ACAA-TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGATAACAAATCTTATCCCTCTAAA
* * *
26613141 GTTGCAATAGAGCATATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTTAAA
65 GTTACAATAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGCAGTAGGTTAAA
** * * * * * *
26613206 GATGCGAA-TCTTATTTTCCTGATGTTACAGTGGAGTATG-TTGAAGTTATA-AGTCTTATCTCC
130 G-TGAAAAGTCTTATCTCCCTGAAGTTACAATGGAGCA-GATTGAA--TATACAATCTTATCTCC
26613268 CTAAAATTACAATGGAA
191 CTAAAATTACAATGGAA
26613285 CAAATTGAAT
Statistics
Matches: 174, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
227 4 0.02
228 162 0.93
229 4 0.02
230 4 0.02
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (226 bp):
ACAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGATAACAAATCTTATCCCTCTAAAG
TTACAATAGAGCAGATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGCAGTAGGTTAAAG
TGAAAAGTCTTATCTCCCTGAAGTTACAATGGAGCAGATTGAATATACAATCTTATCTCCCTAAA
ATTACAATGGAATGGATTAATGCTACAAGTT
Found at i:26613416 original size:177 final size:177
Alignment explanation
Indices: 26613071--26613417 Score: 437
Period size: 177 Copynumber: 2.0 Consensus size: 177
26613061 TTAATGCTAC
* * * *
26613071 AAGTTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCT
1 AAGTTACAAGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAAGATAACAAATCTTATCTCT
* * * *
26613136 CTAAAGTTGCAATAGAGCATATTAAAGCTATAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGG
66 CTAAAGTTGCAATAAAGCAGATTAAAGCTATAAACCTTACCTCCCTAAAGTTGCAGTGGAGCAGG
* * * ** **
26613201 TTAAAGATGCGAATCTTATTTTCCTGATGTTACAGTGGAGTATGTTG
131 TTAAAGATACGAATCTTATCTCCCAAAAATTACAGTGGAGTATGTTG
* *
26613248 AAGTTATAAGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAATATAACAAATCTTATCTCT
1 AAGTTACAAGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAAGATAACAAATCTTATCTCT
* * * * * *
26613313 CTGAAGTTGTAGTAAAGCAGCTTAAAGTTATAAACCTTACCTCCTTAAAGTTGCAGTGGAGCAGG
66 CTAAAGTTGCAATAAAGCAGATTAAAGCTATAAACCTTACCTCCCTAAAGTTGCAGTGGAGCAGG
* *
26613378 TTGAAA-TTAC-AAGTCTTATCTCCCAAAAATTGCAGTGGAG
131 TT-AAAGATACGAA-TCTTATCTCCCAAAAATTACAGTGGAG
26613418 CAGACTGAAG
Statistics
Matches: 143, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
176 2 0.01
177 138 0.97
178 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (177 bp):
AAGTTACAAGTCTTATCTCCCTAAAATTACAATGGAACAAATTGAAGATAACAAATCTTATCTCT
CTAAAGTTGCAATAAAGCAGATTAAAGCTATAAACCTTACCTCCCTAAAGTTGCAGTGGAGCAGG
TTAAAGATACGAATCTTATCTCCCAAAAATTACAGTGGAGTATGTTG
Found at i:26613471 original size:133 final size:134
Alignment explanation
Indices: 26612812--26613700 Score: 521
Period size: 133 Copynumber: 6.6 Consensus size: 134
26612802 CGTGGTGAAT
* * * ** * * *
26612812 CTTATCTCCTGAAA-TTGTAGTGGAGCAGATT-AAAGCCACAA-TCTTATCTCCTTGAAGTTGCA
1 CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAA-TTACAAGTCTTATCTCCCTAAAATTGCA
* * * * * * ** * * *
26612874 GTTGAGCTGATTAAAGATAGCAAATCTTATC-CCTCTGAAGTTATAGTAG-AGTAGATTAAAGCT
65 ATGGAGCAGATTGAAGATATCAAATCTTATCTCC-CTAAAGTTGCAGTGGAAGCAGATTAAAGTT
*
26612937 ATAAAC
129 ACAAAC
* * * * * *
26612943 CTTATCTCCTTAAAGTTGCAGTGCAGTAGGTTGAAGTTAAAAGTCTTATCTCCCTGAAGTTGCAA
1 CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAATTGCAA
* * * * * *
26613008 TGGAGCAGATTGAATATA-CGAATCTTATTTCCCTAAAGTTGCAATGGAATGGATTAATGCTACA
66 TGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAA-GCA--GAT--TA-A
**
26613072 AGTTACAAGT
125 AGTTACAAAC
* * * * * * *
26613082 CTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAACAAATCTTATCTCTCTAAAGTTGCA
1 CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAA-ATTACAAGTCTTATCTCCCTAAAATTGCA
* * * * * * * * *
26613147 ATAGAGCATATTAAAGCTAT-AAACCTTATCTCCCTAAAGTTGCAGTGG-AGTAGGTTAAAGATG
65 ATGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAAGCAGATTAAAGTTA
* *
26613210 CGAAT
130 CAAAC
* * * * * * * * *
26613215 CTTATTTTCC-TGATGTTACAGTGGAGTATGTTGAAGTTATAAGTCTTATCTCCCTAAAATTACA
1 CTTA-TCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAATTGCA
* * * * * * * * *
26613279 ATGGAACAAATTGAATATAACAAATCTTATCTCTCTGAAGTTGTAGT-AAAGCAGCTTAAAGTTA
65 ATGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAAGCAGATTAAAGTTA
*
26613343 TAAAC
130 CAAAC
* * *
26613348 CTTACCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCAAAAATTGCAG
1 CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAATTGCAA
* * * * *
26613413 TGGAGCAGACTGAAGATATCGAATCTTATTTCCCTGAAGTTGCAGTGGAA-CATATTAAAGCTAC
66 TGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAAGCAGATTAAAG----
*
26613477 AAATTACAAAT
127 ---TTACAAAC
* * ** * * * *
26613488 CTTATCTTCC-TGAAGTTGCAATGGAGCATATTGAAGTTAC-AGATCTTATCTCCCTGAAGTTGT
1 CTTATC-TCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAG-TCTTATCTCCCTAAAATTGC
* * * * * * * * **
26613551 AGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGTAGT-AAAGCAGATTGAACCT
64 AATGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAAGCAGATTAAAGTT
*
26613615 ACAAAT
129 ACAAAC
* * * ** * * *
26613621 CTTATCTCCCTGAAGTTACAGTGGAGCATATTAAAACTACTAA-TCTTATCTCCCTAAAGTTGCA
1 CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTAC-AAGTCTTATCTCCCTAAAATTGCA
*
26613685 ATGGAGTAGATTGAAG
65 ATGGAGCAGATTGAAG
26613701 CGACAAGTCC
Statistics
Matches: 579, Mismatches: 148, Indels: 60
0.74 0.19 0.08
Matches are distributed among these distances:
131 13 0.02
132 76 0.13
133 268 0.46
134 10 0.02
135 1 0.00
136 3 0.01
138 4 0.01
139 42 0.07
140 159 0.27
141 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (134 bp):
CTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAATTACAAGTCTTATCTCCCTAAAATTGCAA
TGGAGCAGATTGAAGATATCAAATCTTATCTCCCTAAAGTTGCAGTGGAAGCAGATTAAAGTTAC
AAAC
Found at i:26613523 original size:96 final size:95
Alignment explanation
Indices: 26613381--26613556 Score: 228
Period size: 96 Copynumber: 1.8 Consensus size: 95
26613371 GAGCAGGTTG
* * *
26613381 AAATTACAAGTCTTATCTCCCAAAAATTGCAGTGGAGCAGACTGAAGATATC-GAATCTTATTTC
1 AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATA-CAG-ATCTTATCTC
26613445 CCTGAAGTTGCAGTGGAACATATTAAAGCTAC
64 CCTGAAGTTGCAGTGGAACATATTAAAGCTAC
* ** * * * *
26613477 AAATTACAAATCTTATCTTCCTGAAGTTGCAATGGAGCATATTGAAGTTACAGATCTTATCTCCC
1 AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATACAGATCTTATCTCCC
*
26613542 TGAAGTTGTAGTGGA
66 TGAAGTTGCAGTGGA
26613557 GTAGATCGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
95 26 0.38
96 42 0.62
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (95 bp):
AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATACAGATCTTATCTCCC
TGAAGTTGCAGTGGAACATATTAAAGCTAC
Found at i:26613576 original size:96 final size:96
Alignment explanation
Indices: 26613381--26613576 Score: 207
Period size: 96 Copynumber: 2.0 Consensus size: 96
26613371 GAGCAGGTTG
* * *
26613381 AAATTACAAGTCTTATCTCCCAAAAATTGCAGTGGAGCAGACTGAAGATATCGAATCTTATTTCC
1 AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATATCGAATCTTATCTCC
* * *
26613446 CTGAAGTTGCAGTGGAACATATTAAAGCTAC
66 CTGAAGTTGCAGTGGAACAGATCAAAGATAC
* ** * * * *
26613477 AAATTACAAATCTTATCTTCCTGAAGTTGCAATGGAGCATATTGAAGTTA-C-AGATCTTATCTC
1 AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATATCGA-ATCTTATCTC
* ** *
26613540 CCTGAAGTTGTAGTGGAGTAGATCGAAGATAGC
65 CCTGAAGTTGCAGTGGAACAGATCAAAGATA-C
26613573 AAAT
1 AAAT
26613577 CTTATCTCTC
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
94 1 0.01
95 34 0.42
96 46 0.57
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (96 bp):
AAATTACAAATCTTATCTCCCAAAAATTGCAATGGAGCAGACTGAAGATATCGAATCTTATCTCC
CTGAAGTTGCAGTGGAACAGATCAAAGATAC
Found at i:26613825 original size:51 final size:51
Alignment explanation
Indices: 26613758--26613890 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
26613748 CCATAGCAAG
* * *
26613758 TCTTATCACCCTAAAGTTGCAGTGGAATAGACTAAAGCTTAAAGTCATAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAATAGACTAAAGCTCAAAGTCACAAA
* * * * * * * *
26613809 TCTTATCTCCTTAAAGTTGTAGTAGAACATATTAAAGCTCCAAGTTACAAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAATAGACTAAAGCTCAAAGTCACAAA
* *
26613860 TCTTATCTCCCTAAAGATGCAGTGGAGTAGA
1 TCTTATCTCCCTAAAGTTGCAGTGGAATAGA
26613891 TTGAAAATAC
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (51 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAATAGACTAAAGCTCAAAGTCACAAA
Found at i:26614083 original size:95 final size:95
Alignment explanation
Indices: 26613898--26614083 Score: 248
Period size: 95 Copynumber: 2.0 Consensus size: 95
26613888 AGATTGAAAA
* * *
26613898 TACAAATCTTATCTCCTTGAAGTAACAGTGGAGCAGATTGAAGATGCAAATCTTATTTCCTTAAA
1 TACAAATCTTATCTCCCTAAAGTAACAGTGGAGCAGATTGAAGATGCAAATCTTATTTCCCTAAA
* * **
26613963 GTTTCAGTGGAATGGATTAATGCTACAAGT
66 CTTGCAGTGGAACAGATTAATGCTACAAGT
* * * *
26613993 TACAAATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGAA
1 TACAAATCTTATCTCCCTAAAGTAACAGTGGAGCAGATTGAAGATGCAAATCTTATTTCCCTAAA
*
26614058 CTTGCAGTGGAGCAGATTGAA-GCTAC
66 CTTGCAGTGGAACAGATT-AATGCTAC
26614084 TAATCTTATC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
95 76 0.97
96 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTAAAGTAACAGTGGAGCAGATTGAAGATGCAAATCTTATTTCCCTAAA
CTTGCAGTGGAACAGATTAATGCTACAAGT
Found at i:26614111 original size:139 final size:139
Alignment explanation
Indices: 26613806--26614112 Score: 400
Period size: 139 Copynumber: 2.2 Consensus size: 139
26613796 TTAAAGTCAT
* * *
26613806 AAATCTTATCTCCTTAAAGTTGTAGTAGAACATATTAAAGCTCCAAGTTACAAATCTTATCTCCC
1 AAATCTTATCTCCTTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCC
* * *
26613871 TAAAGATGCAGTGGAGTAGATTGAAAATACAAATCTTATCTCCTTGAAGTAACAGTGGAGCAGAT
66 TAAAGATACAGTGGAGTAGATTGAAAATACAAATCTTATCTCCCTGAACTAACAGTGGAGCAGAT
*
26613936 TGAAGATGC
131 TGAAGATAC
* ** *
26613945 AAATCTTATTTCCTTAAAGTT-TCAGTGGAATGGATTAATGCTACAAGTTACAAATCTTATCTCC
1 AAATCTTATCTCCTTAAAGTTGT-AGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCC
* * * * * **
26614009 CTAAAGTTACAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGAACTTGCAGTGGAGCAGA
65 CTAAAGATACAGTGGAGTAGATTGAAAATACAAATCTTATCTCCCTGAACTAACAGTGGAGCAGA
*
26614074 TTGAAGCTAC
130 TTGAAGATAC
* * *
26614084 TAATCTTATCTCCCTGAAGTTGTAGTGGA
1 AAATCTTATCTCCTTAAAGTTGTAGTGGA
26614113 GTAGACTGAA
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
138 1 0.01
139 141 0.99
140 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Consensus pattern (139 bp):
AAATCTTATCTCCTTAAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCC
TAAAGATACAGTGGAGTAGATTGAAAATACAAATCTTATCTCCCTGAACTAACAGTGGAGCAGAT
TGAAGATAC
Found at i:26614123 original size:44 final size:44
Alignment explanation
Indices: 26613858--26614172 Score: 236
Period size: 44 Copynumber: 7.0 Consensus size: 44
26613848 CCAAGTTACA
* * * *
26613858 AATCTTATCTCCCTAAAGATGCAGTGGAGTAGATTGAAAATACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
* ** * * *
26613902 AATCTTATCTCCTTGAAGTAACAGTGGAGCAGATTGAAGATGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
* * * * * * * *
26613946 AATCTTATTTCCTTAAAGTTTCAGTGGAATGGATTAATGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-T--TG----AAGATACT
* * * *
26613997 AATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGAAGATGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
* * * *
26614041 AATCTTATTTCCCTGAACTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
* * **
26614085 AATCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGCGAC-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
* * * * *
26614128 AATTCCTATATCCCTGAAGTTGTAGTGGATTAGAATGAAGATACT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
26614173 TGGAAAAGAG
Statistics
Matches: 217, Mismatches: 45, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
43 2 0.01
44 175 0.81
45 1 0.00
47 2 0.01
48 2 0.01
50 1 0.00
51 34 0.16
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATACT
Found at i:26615564 original size:3 final size:3
Alignment explanation
Indices: 26615556--26615616 Score: 63
Period size: 3 Copynumber: 19.7 Consensus size: 3
26615546 TTTTTCTCAC
*
26615556 TAT TAT TAT TAT TAT TAT TAT T-T TAT CTAT TAT TAG TAT TATT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TA-T
26615603 TAT GTAT T-T TAT TA
1 TAT -TAT TAT TAT TA
26615617 CAAATTGCAC
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
2 4 0.08
3 34 0.67
4 13 0.25
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:26619183 original size:137 final size:137
Alignment explanation
Indices: 26618923--26619188 Score: 336
Period size: 137 Copynumber: 1.9 Consensus size: 137
26618913 TTGATAGCAT
* * *
26618923 CACCAATATTATTCCTGCTTTGTCAACTCAAAAATGTGTTCAAAAAGGGTTTGAGGCATATCTAG
1 CACCAATATTATTCATGCTTTGTCAACTCAAAAATGTGTTCAAAAAGGGTGTGAGGCATATCTAA
* ** * ** *
26618988 CATATATTTTAGATACTAGAACTTCAAAATTGAAGTTGGAATAATTTTTTATCGTTTGTAATTTG
66 CATATAGTTTAGATACTAGAACTTCAAAATCCAAGTTGGAATAAGTTTCAATCATTTGTAATTTG
26619053 ATAACGC
131 ATAACGC
* * ** **
26619060 CACCAATATTATTTATGCTTTGTCAGCTCAAAAATGTGTTTGAAAAGGGTGTGAGGTGTATCTAA
1 CACCAATATTATTCATGCTTTGTCAACTCAAAAATGTGTTCAAAAAGGGTGTGAGGCATATCTAA
* * * *
26619125 CATATAGTTTAGATATTAGAATTTCAAAA-CCACAGTTGGAATCAGTTTCAATCATTTGTGATTT
66 CATATAGTTTAGATACTAGAACTTCAAAATCCA-AGTTGGAATAAGTTTCAATCATTTGTAATTT
26619189 TGTGGATGTA
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
136 1 0.01
137 107 0.99
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (137 bp):
CACCAATATTATTCATGCTTTGTCAACTCAAAAATGTGTTCAAAAAGGGTGTGAGGCATATCTAA
CATATAGTTTAGATACTAGAACTTCAAAATCCAAGTTGGAATAAGTTTCAATCATTTGTAATTTG
ATAACGC
Found at i:26628699 original size:13 final size:13
Alignment explanation
Indices: 26628677--26628723 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
26628667 CATTAAAGTC
*
26628677 AAATTTAATTATA
1 AAATTAAATTATA
26628690 AAATTAAATT-TA
1 AAATTAAATTATA
* * *
26628702 AAATTTAAGTATT
1 AAATTAAATTATA
26628715 AAATTAAAT
1 AAATTAAAT
26628724 CTTGAACCTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
12 10 0.37
13 17 0.63
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (13 bp):
AAATTAAATTATA
Found at i:26629429 original size:16 final size:15
Alignment explanation
Indices: 26629398--26629436 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
26629388 AATCATTTTC
*
26629398 AATATAATTTATAAT
1 AATATTATTTATAAT
26629413 AATATTATTTCATAAT
1 AATATTATTT-ATAAT
*
26629429 AAAATTAT
1 AATATTAT
26629437 ATTAAAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTATTTATAAT
Found at i:26632504 original size:12 final size:12
Alignment explanation
Indices: 26632489--26632519 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26632479 TTCTCTTTTA
26632489 TTTTTCTTTCCC
1 TTTTTCTTTCCC
26632501 TTTTTCTTTCCC
1 TTTTTCTTTCCC
26632513 TTTTTCT
1 TTTTTCT
26632520 CCCTTGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:26634067 original size:12 final size:13
Alignment explanation
Indices: 26634050--26634080 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26634040 TGTTTTAAGC
26634050 TTTAATT-TTATT
1 TTTAATTATTATT
26634062 TTTAATTATTATT
1 TTTAATTATTATT
26634075 TTTAAT
1 TTTAAT
26634081 AGATTAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTAATTATTATT
Found at i:26636397 original size:62 final size:62
Alignment explanation
Indices: 26636221--26636659 Score: 546
Period size: 62 Copynumber: 7.1 Consensus size: 62
26636211 GCCTGGACAA
* * * *
26636221 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACACGGCCTAGGCACACGTCCGTGTCCATG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
** * * *
26636283 GTTGTGTGGTTATTAAGTACAAACAGT---TTACAAGGCCTGGGTACATGCCCGTGTCCCTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
* * * *
26636342 GCTGTGTGGCTCTTAAGCACAAACAGTGAGTTACAAGGCCTGGGCACATGCCCGTGTCCCTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
* * * * *
26636404 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTATACA-GCCTGGGCTCACGCTCATGTCCTTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACA-AGGCCTGGGCACACGCCCGTGTCCCTG
* * * *
26636466 GCCGTATGGTTTTTAAGTACAAACAGTGAGTTACACGACCTGGGCACACGCCCGTGTCCCTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
* * * * *
26636528 GCCATGTGGTTCTTAAGCACAAACAGTGAGTTACATA-GCTTGGGCACACACCCCTGTCCCTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACA-AGGCCTGGGCACACGCCCGTGTCCCTG
* * * *
26636590 GCCGTGTGGTTCTTAAGCACAAACAGTGAGTTACATGGCCTGGGCACGCACCCGTGTCCCTG
1 GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
26636652 GCCGTGTG
1 GCCGTGTG
26636660 AACCCTGCAC
Statistics
Matches: 324, Mismatches: 46, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
59 49 0.15
62 274 0.85
63 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (62 bp):
GCCGTGTGGTTCTTAAGTACAAACAGTGAGTTACAAGGCCTGGGCACACGCCCGTGTCCCTG
Found at i:26638569 original size:11 final size:11
Alignment explanation
Indices: 26638553--26638591 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26638543 ATTTATGTTC
26638553 ATTTAAAACTT
1 ATTTAAAACTT
*
26638564 ATTTAATAAATT
1 ATTTAA-AACTT
*
26638576 ATTTAAAGCTT
1 ATTTAAAACTT
26638587 ATTTA
1 ATTTA
26638592 TTGTTTCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (11 bp):
ATTTAAAACTT
Found at i:26639618 original size:27 final size:27
Alignment explanation
Indices: 26639580--26639632 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
26639570 GATTTTTTAG
26639580 CTTTAAATGCACCCAAGTTAGCCTAAA
1 CTTTAAATGCACCCAAGTTAGCCTAAA
*
26639607 CTTTAAATGCACCTAAGTTAGCCTAA
1 CTTTAAATGCACCCAAGTTAGCCTAA
26639633 CTATTACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (27 bp):
CTTTAAATGCACCCAAGTTAGCCTAAA
Found at i:26643095 original size:25 final size:25
Alignment explanation
Indices: 26643067--26643148 Score: 119
Period size: 25 Copynumber: 3.3 Consensus size: 25
26643057 TCATTAGGGT
*
26643067 TACTGATTTATAGCTCGTCAGAGCA
1 TACTGATTTATAGCTCGTAAGAGCA
*
26643092 TACTAATTTATAGCTCGTAAGAGCA
1 TACTGATTTATAGCTCGTAAGAGCA
* * *
26643117 TACCGATTCATAGCTCGTGAGAGCA
1 TACTGATTTATAGCTCGTAAGAGCA
26643142 TACTGAT
1 TACTGAT
26643149 CTTCAGCTCA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
TACTGATTTATAGCTCGTAAGAGCA
Found at i:26643157 original size:50 final size:50
Alignment explanation
Indices: 26643071--26643176 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
26643061 TAGGGTTACT
* * *
26643071 GATTTATAGCTCGTCAGAGCATACTAATTTATAGCTCGTAA-GAGCATACC
1 GATTCATAGCTCGTCAGAGCATACTAATTTACAGCTC-AAATGAGCATACC
* *
26643121 GATTCATAGCTCGTGAGAGCATACTGATCTT-CAGCTCAAATGAGCATACC
1 GATTCATAGCTCGTCAGAGCATACTAAT-TTACAGCTCAAATGAGCATACC
26643171 GATTCA
1 GATTCA
26643177 CAACTTATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 2 0.04
50 45 0.92
51 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (50 bp):
GATTCATAGCTCGTCAGAGCATACTAATTTACAGCTCAAATGAGCATACC
Found at i:26648403 original size:54 final size:54
Alignment explanation
Indices: 26648332--26648489 Score: 151
Period size: 54 Copynumber: 2.9 Consensus size: 54
26648322 CCATTTTGGT
* * * * **
26648332 AGACTAC-CCAGTGTTTATTGTCCTAATGAACTACCCCGTTTTTATTGTTCTGGC
1 AGACTACTCC-GTTTTTATTGTCCTAATGAACTACCCCGTGTTTATTATCCCAGC
* *
26648386 AGACTA-TCCTGTTTTTATTGTCCTAGTGGACTACCCCGTGTTTATTATCCCAGC
1 AGACTACTCC-GTTTTTATTGTCCTAATGAACTACCCCGTGTTTATTATCCCAGC
* * * * *
26648440 GGACTACTCCGTTTTTATTGTCCCAA-GAAACTATCTCATGTTTATTATCC
1 AGACTACTCCGTTTTTATTGTCCTAATG-AACTACCCCGTGTTTATTATCC
26648490 TGGAAGACTC
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
53 1 0.01
54 81 0.95
55 3 0.04
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (54 bp):
AGACTACTCCGTTTTTATTGTCCTAATGAACTACCCCGTGTTTATTATCCCAGC
Found at i:26648443 original size:27 final size:27
Alignment explanation
Indices: 26648333--26648464 Score: 102
Period size: 27 Copynumber: 4.9 Consensus size: 27
26648323 CATTTTGGTA
* * **
26648333 GACTACCCAGTGTTTATTGTCCTAATG
1 GACTACCCCGTGTTTATTGTCCCAGCG
* * * ** *
26648360 AACTACCCCGTTTTTATTGTTCTGGCA
1 GACTACCCCGTGTTTATTGTCCCAGCG
* * * * *
26648387 GACTATCCTGTTTTTATTGTCCTAGTG
1 GACTACCCCGTGTTTATTGTCCCAGCG
*
26648414 GACTACCCCGTGTTTATTATCCCAGCG
1 GACTACCCCGTGTTTATTGTCCCAGCG
* *
26648441 GACTACTCCGTTTTTATTGTCCCA
1 GACTACCCCGTGTTTATTGTCCCA
26648465 AGAAACTATC
Statistics
Matches: 81, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.39
Consensus pattern (27 bp):
GACTACCCCGTGTTTATTGTCCCAGCG
Found at i:26658448 original size:6 final size:6
Alignment explanation
Indices: 26658430--26658516 Score: 115
Period size: 6 Copynumber: 14.3 Consensus size: 6
26658420 AAGAAACATT
26658430 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
26658478 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
26658517 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
5 3 0.04
6 64 0.89
7 4 0.06
8 1 0.01
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:26658689 original size:27 final size:26
Alignment explanation
Indices: 26658641--26658742 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
26658631 GCTCAGTTAT
* *
26658641 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGA-A
* *
26658668 TAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAAAGCCACCAGAA
*
26658694 CAGATAGTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAG-AA
*
26658722 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
26658743 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.78
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAAAGCCACCAGAA
Found at i:26658937 original size:22 final size:22
Alignment explanation
Indices: 26658901--26658964 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
26658891 GCAAATACGT
26658901 TTGGCACACAA-CCATAATCAAG
1 TTGGCACA-AAGCCATAATCAAG
* * *
26658923 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAAG
*
26658945 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
26658965 GAAGGCTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:26659449 original size:27 final size:27
Alignment explanation
Indices: 26659391--26659986 Score: 578
Period size: 27 Copynumber: 22.3 Consensus size: 27
26659381 AGGGGTAAAA
* * * *
26659391 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
26659417 CGGTAATTCCACCATACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
26659444 TAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
26659471 TGGTAATTC-ACCCTACAGGGGTATTA
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
26659497 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
26659524 TGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * * * *
26659551 CGGTATTTCTACCTTATAAGAGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
26659578 CGATATTTCTACCCTACA-AGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
26659604 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
26659631 TAGTATTTCTACCCCACA-AGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
26659657 TGGTAATTCTACCCTACAGGGGAATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
26659684 CGGTAATTCTACCCTACAGTGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
26659711 CGGTATTTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
26659738 CGGTATTTCTACCCTACA-AGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
26659764 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
26659791 CGATATTTCTACCCTACA-AGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
26659817 CGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
26659844 TAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** * * *
26659871 CAGTATTTTTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
26659898 CGGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * ** *
26659925 TAGTAATTTTA-CAAACTAGGGGTTTTT
1 TGGTAATTCTACCCTAC-AGGGGTATTT
* * **
26659952 TGATAATTTTA-CAAACCAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
26659979 TGGTAATT
1 TGGTAATT
26659987 TTATAAACAA
Statistics
Matches: 479, Mismatches: 83, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
26 128 0.27
27 350 0.73
28 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:26659515 original size:80 final size:81
Alignment explanation
Indices: 26659396--26659932 Score: 710
Period size: 80 Copynumber: 6.7 Consensus size: 81
26659386 TAAAATGGTA
* * * * *
26659396 ATTT-TACCCCACAA-GGTATCTCGGTAATTCCACCATACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
* *
26659459 ATAGGGGTATTTTGGT
66 ACAGGGGTATTTCGGT
* * * *
26659475 AATTC-ACCCTACAGGGGTATTACGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
26659539 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * * * * *
26659555 ATTTCTACCTTATAAGAGTATTTCGATATTTCTACCCTACA-AGGTATTTCGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
**
26659619 ACAGGGGTATTTTAGT
66 ACAGGGGTATTTCGGT
* * * *
26659635 ATTTCTACCCCACAA-GGTATTTTGGTAATTCTACCCTACAGGGGAATTTCGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
*
26659699 ACAGTGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
26659715 ATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACA-AGGTATTTCGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
*
26659779 ACAGGGGTATTTCGAT
66 ACAGGGGTATTTCGGT
*
26659795 ATTTCTACCCTACAA-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
* *
26659859 ATAGGGGTATTTCAGT
66 ACAGGGGTATTTCGGT
* * *
26659875 ATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATT
26659933 TTACAAACTA
Statistics
Matches: 401, Mismatches: 50, Indels: 12
0.87 0.11 0.03
Matches are distributed among these distances:
79 55 0.14
80 253 0.63
81 93 0.23
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:26659959 original size:54 final size:53
Alignment explanation
Indices: 26659420--26659995 Score: 186
Period size: 53 Copynumber: 10.8 Consensus size: 53
26659410 GGTATCTCGG
* * * * ** * *
26659420 TAATTCCACCATACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
* * ** *
26659474 TAATTC-ACCCTACAGGGGTA--TTACGATAATTCTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTATAGGGGTATTTTA-G-TAATTTTA-CAAACAGGGGTATTTTGA
* ** ** * * * *
26659527 TAATTCTACCCTACAGGGGTATTTCGGT-ATTTCTACCTTATAAGAGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTT-TA-CAAACAGGGGTATTTTGA
* * * ** * **
26659581 TATTTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTT-A
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
* * * * * * ** * * *
26659633 GTATTTCTACCCCACA-AGGTATTTTGGTAATTCTACCCTACAGGGGAATTTCGG
1 -TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
* * ** ** * * *
26659687 TAATTCTACCCTACAGTGGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTT-TA-CAAACAGGGGTATTTTGA
* * * ** * ** *
26659741 TATTTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
* * * ** * **
26659794 TATTTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTT-A
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
* * ** * * *
26659846 GTAATTCTACCCTATAGGGGTATTTCAGTATTTTTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTATAGGGGTATTTTAGTAATTTTA-CAAACAGGGGTATTTTGA
*
26659901 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTACAAACTAGGGGTTTTTTGA
1 TAATTCTACCCTATAGGGGTATTTTAGTAATTTTACAAAC-AGGGGTATTTTGA
* ** * * *
26659955 TAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTATAAACA
1 TAATTCTACCCTA-TAGGGGTATTTTAGTAATTTTACAAACA
26659996 AAGTGTATTT
Statistics
Matches: 445, Mismatches: 60, Indels: 35
0.82 0.11 0.06
Matches are distributed among these distances:
51 3 0.01
52 3 0.01
53 235 0.53
54 202 0.45
55 1 0.00
56 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (53 bp):
TAATTCTACCCTATAGGGGTATTTTAGTAATTTTACAAACAGGGGTATTTTGA
Found at i:26659975 original size:81 final size:82
Alignment explanation
Indices: 26659810--26660148 Score: 273
Period size: 81 Copynumber: 4.2 Consensus size: 82
26659800 TACCCTACAA
* * ** * * *
26659810 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTA-TAGGGG-TATTTCA
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTTTTTTGA
* **
26659873 GTATTTTTACCCTA-CAAG
65 GTAATTTTA-CAAACCAAG
* * *
26659891 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTTTACAAACTAGGGGTTTTTTGA-
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACAAACCAGGGGTTTTTTGAG
*
26659955 TAATTTTACAAACCAGG
66 TAATTTTACAAACCAAG
* *** * *
26659972 GGTATTTTGGTAATTTTA-TAAACAAAGTGTATTTTAGTAATTTTACAAACCA-GGGTTATTTTG
1 GGTATTTTGGTAATTCTACCCTAC-AGGGGTATTTTAGTAATTTTACAAACCAGGGGTT-TTTTG
**
26660035 -GTAATTTTGTAAACCAAG
64 AGTAATTTTACAAACCAAG
* ** * * * * * *
26660053 GGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT-A
1 GGTATTTTGGTAATTCTACCCTA-CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTTTTTTGA
* *
26660116 GTAATTTTACAAACTAGG
65 GTAATTTTACAAACCAAG
26660134 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
26660149 TTGTAAACCA
Statistics
Matches: 215, Mismatches: 34, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
80 10 0.05
81 195 0.91
82 10 0.05
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (82 bp):
GGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACAAACCAGGGGTTTTTTGAG
TAATTTTACAAACCAAG
Found at i:26660013 original size:54 final size:54
Alignment explanation
Indices: 26659915--26660161 Score: 334
Period size: 54 Copynumber: 4.6 Consensus size: 54
26659905 TCTACCCTAT
* * * * *
26659915 AGGGGTATTTTAGTAATTTTACAAACTAGGGGT-TTTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG-TAATTTTACAAACC
*
26659969 AGGGGTATTTTGGTAATTTTATAAACAAAGTGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
* * * *
26660023 AGGGTTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
* * * *
26660077 AGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
*
26660131 AGGGGTATTTTGGTAATTTTGTAAACCAAAG
1 AGGGGTATTTTGGTAATTTTATAAA-CAAAG
26660162 TATTCTAAAC
Statistics
Matches: 171, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
54 162 0.95
55 9 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
Found at i:26660156 original size:27 final size:27
Alignment explanation
Indices: 26659915--26660150 Score: 301
Period size: 27 Copynumber: 8.7 Consensus size: 27
26659905 TCTACCCTAT
* *
26659915 AGGGGTATTTTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
26659942 AGGGGTTTTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
26659969 AGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
26659996 AAGTGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* **
26660023 AGGGTTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
26660050 AAGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
26660077 AGGGGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * *
26660104 AAGGGTATTCTAGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
26660131 AGGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
26660151 GTAAACCAAA
Statistics
Matches: 174, Mismatches: 35, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:26663425 original size:28 final size:28
Alignment explanation
Indices: 26663393--26663447 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
26663383 CTCCATGAAT
26663393 GCTTTCCTTTCCATAAATTGCCACAAAG
1 GCTTTCCTTTCCATAAATTGCCACAAAG
** * *
26663421 GCTTTTGTTTTCATATATTGCCACAAA
1 GCTTTCCTTTCCATAAATTGCCACAAA
26663448 AGCGTCTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (28 bp):
GCTTTCCTTTCCATAAATTGCCACAAAG
Found at i:26663466 original size:26 final size:27
Alignment explanation
Indices: 26663430--26663507 Score: 86
Period size: 28 Copynumber: 2.9 Consensus size: 27
26663420 GGCTTTTGTT
* *
26663430 TTCATATATTGCCACAAAAGCGTC-TA
1 TTCATAGATTGCCACAAAGGCGTCATA
* * *
26663456 TTCATAGATTGCCATAAAGGCATCCATT
1 TTCATAGATTGCCACAAAGGCGT-CATA
*
26663484 TTCATAGATTACCACAAAGGCGTC
1 TTCATAGATTGCCACAAAGGCGTC
26663508 CATTTCTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 19 0.45
27 2 0.05
28 21 0.50
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29
Consensus pattern (27 bp):
TTCATAGATTGCCACAAAGGCGTCATA
Found at i:26663490 original size:28 final size:28
Alignment explanation
Indices: 26663456--26663512 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
26663446 AAAGCGTCTA
* *
26663456 TTCATAGATTGCCATAAAGGCATCCATT
1 TTCATAGATTACCACAAAGGCATCCATT
*
26663484 TTCATAGATTACCACAAAGGCGTCCATT
1 TTCATAGATTACCACAAAGGCATCCATT
26663512 T
1 T
26663513 CTATACGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (28 bp):
TTCATAGATTACCACAAAGGCATCCATT
Found at i:26665316 original size:10 final size:10
Alignment explanation
Indices: 26665301--26665325 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26665291 AAGGTAATCC
26665301 TATTTCCCCT
1 TATTTCCCCT
26665311 TATTTCCCCT
1 TATTTCCCCT
26665321 TATTT
1 TATTT
26665326 TCTTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (10 bp):
TATTTCCCCT
Found at i:26667618 original size:17 final size:17
Alignment explanation
Indices: 26667596--26667628 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26667586 AAGATGATAA
26667596 TTTCTT-TCTTCTTATCC
1 TTTCTTATCTT-TTATCC
26667613 TTTCTTATCTTTTATC
1 TTTCTTATCTTTTATC
26667629 GTCTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTCTTATCTTTTATCC
Found at i:26668546 original size:11 final size:11
Alignment explanation
Indices: 26668530--26668554 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26668520 TCACATGACC
26668530 AAAACACATTT
1 AAAACACATTT
26668541 AAAACACATTT
1 AAAACACATTT
26668552 AAA
1 AAA
26668555 GCATACCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAACACATTT
Found at i:26670096 original size:62 final size:62
Alignment explanation
Indices: 26670021--26670139 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 62
26670011 AAGTACAAGA
** * *
26670021 TAGAGATCACACAGGTTAGGGACATGAGCATGTGTCCAGGCCGTGTGACTTACTGTTGCTTT
1 TAGAGATCACACAGGCCAGGGACACGAGCATGTGTCCAGGCCGTGTGACTCACTGTTGCTTT
* ** *
26670083 TAGAGTTCACACAGGCCATTGACACGGGCATGTGTCCAGGCCGTGTGACTCACTGTT
1 TAGAGATCACACAGGCCAGGGACACGAGCATGTGTCCAGGCCGTGTGACTCACTGTT
26670140 TACAATTTTG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (62 bp):
TAGAGATCACACAGGCCAGGGACACGAGCATGTGTCCAGGCCGTGTGACTCACTGTTGCTTT
Found at i:26670596 original size:19 final size:19
Alignment explanation
Indices: 26670548--26670607 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 19
26670538 AATCTTTAAG
*
26670548 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
*
26670567 G--ATGAAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26670584 GATATGCAATCTTGAGGATAT
1 GATATGCAATCTT-A-GATAT
26670605 GAT
1 GAT
26670608 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 15 0.44
19 10 0.29
20 1 0.03
21 8 0.24
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26675997 original size:40 final size:39
Alignment explanation
Indices: 26675892--26676092 Score: 273
Period size: 40 Copynumber: 5.1 Consensus size: 39
26675882 TGGATGATAA
*
26675892 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
*
26675932 CCGGGCTAAG-CCCGAAGGCAGTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
26675971 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
26676011 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
26676051 CCGGGCT-AGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
26676090 CCG
1 CCG
26676093 AGTAAATTCC
Statistics
Matches: 149, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 62 0.42
40 85 0.57
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:26676062 original size:79 final size:79
Alignment explanation
Indices: 26675888--26676074 Score: 288
Period size: 79 Copynumber: 2.4 Consensus size: 79
26675878 TATTTGGATG
* *
26675888 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAG
26675953 TTGTGCGAGCTACT
66 TTGTGCGAGCTACT
* *
26675967 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
26676031 ATTTGTGCGAGTTACT
64 AGTTGTGCGAGCTACT
26676047 ATAACCGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
26676075 AGCAAGTAGC
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
78 2 0.02
79 64 0.65
80 33 0.33
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAG
TTGTGCGAGCTACT
Found at i:26683979 original size:39 final size:40
Alignment explanation
Indices: 26683916--26684101 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
26683906 TATTTGGATG
* *
26683916 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
26683956 A-ATTCCGGGCTAAG-CCCGAAGGCAGTTGTGCGAGCTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
26683995 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
26684035 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
26684075 ATAA-CGGGCT-AGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
26684102 AGCAAGTAGC
Statistics
Matches: 135, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
38 17 0.13
39 40 0.30
40 78 0.58
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26684083 original size:79 final size:78
Alignment explanation
Indices: 26683916--26684101 Score: 268
Period size: 79 Copynumber: 2.4 Consensus size: 78
26683906 TATTTGGATG
* *
26683916 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAG
1 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAG
26683981 TTGTGCGAGCTACT
65 TTGTGCGAGCTACT
* *
26683995 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATA-ACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
26684059 ATTTGTGCGAGTTACT
63 AGTTGTGCGAGCTACT
26684075 ATAACGGGCT-AGTCCCGAAGGCATTTG
1 ATAACGGGCTAAGTCCCGAAGGCATTTG
26684102 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
78 19 0.20
79 52 0.54
80 26 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAGT
TGTGCGAGCTACT
Found at i:26687543 original size:8 final size:8
Alignment explanation
Indices: 26687530--26687583 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
26687520 CTATTTCAAA
26687530 AAAAAAAG
1 AAAAAAAG
26687538 -AAAAAAG
1 AAAAAAAG
26687545 AAAAGAAA-
1 AAAA-AAAG
*
26687553 ATAAATAA-
1 A-AAAAAAG
*
26687561 ATAAAAAG
1 AAAAAAAG
26687569 AAAAAAAG
1 AAAAAAAG
26687577 AAAAAAA
1 AAAAAAA
26687584 ATGGAGAGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 11 0.29
8 21 0.55
9 6 0.16
ACGTcount: A:0.85, C:0.00, G:0.09, T:0.06
Consensus pattern (8 bp):
AAAAAAAG
Found at i:26687548 original size:12 final size:11
Alignment explanation
Indices: 26687527--26687584 Score: 55
Period size: 12 Copynumber: 4.9 Consensus size: 11
26687517 CTTCTATTTC
26687527 AAAAAAAAAAG
1 AAAAAAAAAAG
26687538 AAAAAAGAAAAG
1 AAAAAA-AAAAG
*
26687550 AAAATAAATAAAT
1 AAAA-AAA-AAAG
26687563 AAAAAGAAAAA-
1 AAAAA-AAAAAG
26687574 AAGAAAAAAAA
1 AA-AAAAAAAA
26687585 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
11 13 0.32
12 17 0.41
13 11 0.27
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:26688631 original size:44 final size:45
Alignment explanation
Indices: 26688488--26688802 Score: 211
Period size: 44 Copynumber: 7.1 Consensus size: 45
26688478 CAAAGAAACA
* *
26688488 AGATTTGGCATCCCTGTGTTTATAGGGAA-ACAGATCGAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* * ** * * **
26688533 AGATCT-GAAACTCCTGTGCCTACAGCGAAGC-AGATCGAAGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAAGATCGAAGATAGC
* * *
26688578 AG--CATGGCATCCCTATGTTTATAGGGAGCAAG-TTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
*
26688621 AGATTTGGCATCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * * * ***
26688665 AGATCTGACATTCCTGTGCTTACAGCGAA-ACAGATCAAAGATTTT
1 AGATCTGGCATCCCTGTGTTTATAGGGAACA-AGATCGAAGATAGC
* * *
26688710 A-ACCTGGCATCTCTGTGTTTATAGGGAACAAG-TTGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
* * * * *
26688753 AGATTTGGCATCCTTGTGTTTACAAGGAACAA-ACCGAAGACATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAG--ATAGC
26688799 AGAT
1 AGAT
26688803 TTGACTTTCA
Statistics
Matches: 200, Mismatches: 54, Indels: 31
0.70 0.19 0.11
Matches are distributed among these distances:
43 21 0.10
44 123 0.62
45 47 0.23
46 9 0.05
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (45 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAAGATCGAAGATAGC
Found at i:26688729 original size:132 final size:132
Alignment explanation
Indices: 26688488--26688807 Score: 451
Period size: 132 Copynumber: 2.4 Consensus size: 132
26688478 CAAAGAAACA
* *
26688488 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAACAGATCTGAAACTCCTGTGCC
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTGACACTCCTGTGCC
* * * *
26688553 TACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTATGTTTATAGGGAGCAAGTTGAAGAT
65 TACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGAT
26688618 AGC
130 AGC
* *
26688621 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCCT
* * * *
26688686 ACAGCGAAACAGATCAAAGATTTTAACCTGGCATCTCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATA
26688751 GC
131 GC
* * * * * *
26688753 AGATTTGGCATCCTTGTGTTTACAAGGAACAAACCGAAGACATAGCAGATTTGAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGAC
26688808 TTTCAGATGT
Statistics
Matches: 167, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
132 127 0.76
133 27 0.16
134 13 0.08
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCCT
ACAGCGAAACAGATCAAAGATTTCAACATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:26689455 original size:14 final size:15
Alignment explanation
Indices: 26689436--26689492 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
26689426 AATCTTTAAG
26689436 GATATG-CAATCTTA
1 GATATGACAATCTTA
26689450 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
26689467 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
26689486 GATATGA
1 GATATGA
26689493 TATGCAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:26689477 original size:36 final size:38
Alignment explanation
Indices: 26689436--26689525 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 38
26689426 AATCTTTAAG
26689436 GATATGCAATCTTAGATATGATA-CAATCTT-AGATAT
1 GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
26689472 GATATGCAATCTTAGATATGATATGCAATCTTGAAGATAT
1 GATATGCAATCTTAGATATGATA-GCAATCTT-AAGATAT
*
26689512 GATATTGTAATCTT
1 GATA-TGCAATCTT
26689526 GGAGATTTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
36 23 0.48
38 7 0.15
40 10 0.21
41 8 0.17
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATAGCAATCTTAAGATAT
Found at i:26689483 original size:19 final size:19
Alignment explanation
Indices: 26689436--26689516 Score: 130
Period size: 19 Copynumber: 4.3 Consensus size: 19
26689426 AATCTTTAAG
26689436 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26689455 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26689472 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26689491 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
26689512 GATAT
1 GATAT
26689517 TGTAATCTTG
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.29
19 30 0.52
21 11 0.19
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26700842 original size:28 final size:29
Alignment explanation
Indices: 26700804--26700968 Score: 171
Period size: 28 Copynumber: 5.9 Consensus size: 29
26700794 CTTTAGAAAA
* *
26700804 TGCCACGAAGGTGTTCC-TTTCCATAGAT
1 TGCCACAAAGGTGTTCCATTTTCATAGAT
* ** *
26700832 TGCCACAAAGG-CTTCTGTTTTCCTAGAT
1 TGCCACAAAGGTGTTCCATTTTCATAGAT
*
26700860 TGCCACAAAGGTG-TCCATTTTCATATAT
1 TGCCACAAAGGTGTTCCATTTTCATAGAT
* * *
26700888 TGTCACAAAGGT-CTCCATTTTCATATAT
1 TGCCACAAAGGTGTTCCATTTTCATAGAT
* *
26700916 TGTCACAAAGGTG-TCCATTTTCATAAAT
1 TGCCACAAAGGTGTTCCATTTTCATAGAT
*
26700944 TTCCACAAAGGTG-TCCATTTTCATA
1 TGCCACAAAGGTGTTCCATTTTCATA
26700969 CATTTTCACG
Statistics
Matches: 119, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
27 3 0.03
28 116 0.97
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
TGCCACAAAGGTGTTCCATTTTCATAGAT
Found at i:26700871 original size:56 final size:56
Alignment explanation
Indices: 26700804--26700968 Score: 190
Period size: 56 Copynumber: 2.9 Consensus size: 56
26700794 CTTTAGAAAA
* * * ** *
26700804 TGCCACGAAGGTGTTCC-TTTCCATAGATTGCCACAAAGG-CTTCTGTTTTCCTAGAT
1 TGCCACAAAGGTG-TCCATTTTCATAAATTGCCACAAAGGTC-TCCATTTTCATAGAT
* * *
26700860 TGCCACAAAGGTGTCCATTTTCATATATTGTCACAAAGGTCTCCATTTTCATATAT
1 TGCCACAAAGGTGTCCATTTTCATAAATTGCCACAAAGGTCTCCATTTTCATAGAT
* * *
26700916 TGTCACAAAGGTGTCCATTTTCATAAATTTCCACAAAGGTGTCCATTTTCATA
1 TGCCACAAAGGTGTCCATTTTCATAAATTGCCACAAAGGTCTCCATTTTCATA
26700969 CATTTTCACG
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
55 3 0.03
56 90 0.96
57 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (56 bp):
TGCCACAAAGGTGTCCATTTTCATAAATTGCCACAAAGGTCTCCATTTTCATAGAT
Found at i:26700973 original size:28 final size:28
Alignment explanation
Indices: 26700849--26700977 Score: 179
Period size: 28 Copynumber: 4.6 Consensus size: 28
26700839 AAGGCTTCTG
* * *
26700849 TTTTCCTAGATTGCCACAAAGGTGTCCA
1 TTTTCATATATTGTCACAAAGGTGTCCA
*
26700877 TTTTCATATATTGTCACAAAGGTCTCCA
1 TTTTCATATATTGTCACAAAGGTGTCCA
26700905 TTTTCATATATTGTCACAAAGGTGTCCA
1 TTTTCATATATTGTCACAAAGGTGTCCA
*
26700933 TTTTCATAAATT-TCCACAAAGGTGTCCA
1 TTTTCATATATTGT-CACAAAGGTGTCCA
* *
26700961 TTTTCATACATTTTCAC
1 TTTTCATATATTGTCAC
26700978 GATAGAGATT
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.01
28 90 0.98
29 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.39
Consensus pattern (28 bp):
TTTTCATATATTGTCACAAAGGTGTCCA
Found at i:26705284 original size:47 final size:47
Alignment explanation
Indices: 26705218--26705883 Score: 1100
Period size: 47 Copynumber: 14.1 Consensus size: 47
26705208 GAAATGATAG
26705218 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705265 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
26705314 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26705361 TAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26705408 TAAGGCCTAATAGCCGATGTGATGAATGTTAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705455 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
26705504 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26705551 TAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
26705598 TAAGGCCTAATAGCCGATGCGATGAATGTTAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26705645 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705692 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705739 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705786 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
26705833 -CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26705880 TAAG
1 TAAG
26705884 TCCCGAAGGG
Statistics
Matches: 586, Mismatches: 27, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
46 2 0.00
47 488 0.83
48 2 0.00
49 94 0.16
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26705541 original size:190 final size:190
Alignment explanation
Indices: 26705218--26705883 Score: 1144
Period size: 190 Copynumber: 3.5 Consensus size: 190
26705208 GAAATGATAG
*
26705218 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
26705283 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
26705348 TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
*
26705408 TAAGGCCTAATAGCCGATGTGATGAATGTTAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
26705473 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
26705538 TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
* *
26705598 TAAGGCCTAATAGCCGATGCGATGAATGTTAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
26705663 GTGATGAATGTGAAAGTG--TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
26705726 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
* * * * *
26705786 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGA
* * *
26705850 CGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
65 TGTGATGAATGTGAAAGTGTATATATATGTGATAAG
26705884 TCCCGAAGGG
Statistics
Matches: 456, Mismatches: 17, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
187 2 0.00
188 181 0.40
189 1 0.00
190 272 0.60
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATGTGTGATAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
Found at i:26706058 original size:37 final size:37
Alignment explanation
Indices: 26706002--26706080 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26705992 CCGAGCTCTA
* *
26706002 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26706039 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26706076 AAGAC
1 AAGAC
26706081 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26707735 original size:43 final size:43
Alignment explanation
Indices: 26707635--26707739 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
26707625 ATCCGATAAG
* * * *
26707635 TGTAAGACCACGTCTGGGA-CGTTGGAATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGATAGTTGGAATCGTATTTAATTACA
*
26707677 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTAATTACA
1 TGTAAGACCAC-GTCTGGGATAGTTGGAATCG-TATTTAATTACA
*
26707720 TGTAATACCACGTCTGGGAT
1 TGTAAGACCACGTCTGGGAT
26707740 GTTAGCATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.45
43 27 0.51
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATAGTTGGAATCGTATTTAATTACA
Found at i:26716862 original size:27 final size:27
Alignment explanation
Indices: 26716832--26717009 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
26716822 ATATTGAGCC
* *
26716832 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
26716859 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26716886 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
26716914 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26716941 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26716968 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26716995 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26717010 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Done.