Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114316535
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4920000 characters in sequence are not A, C, G, or T
File 85 of 356
Found at i:26716971 original size:82 final size:81
Alignment explanation
Indices: 26716853--26717008 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26716843 TGCTATATAA
* * *
26716853 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
26716918 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26716935 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
26716999 CACTTAGTGC
65 CACTTAGTGC
26717009 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26724697 original size:27 final size:27
Alignment explanation
Indices: 26724667--26724844 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
26724657 ATATTGAGCC
* *
26724667 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26724694 CGCACACTTAGTGAC-ACGTAATCAAAT
1 CGCACACTTAGTG-CTACATAATCAACT
*
26724721 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
26724749 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26724776 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26724803 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26724830 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26724845 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 26 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26724806 original size:82 final size:81
Alignment explanation
Indices: 26724688--26724843 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26724678 TGCTATATAA
* * *
26724688 TCAACTCGCACACTTAGTGACACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGACACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
26724753 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26724770 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGACA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
26724834 CACTTAGTGC
65 CACTTAGTGC
26724844 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGACACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26724816 original size:54 final size:54
Alignment explanation
Indices: 26724667--26724844 Score: 184
Period size: 54 Copynumber: 3.3 Consensus size: 54
26724657 ATATTGAGCC
* * * * *
26724667 CGCACACTCAGTGCTATATAATCA-ACTCGCACACTTAGTG-ACACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCA-ACATAGTC-AAT
** *
26724721 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCAACATAGTCAA-T
* **
26724776 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTTAGTGCAACATAGTC-AAT
26724830 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26724845 GTACAATTTA
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
54 60 0.58
55 44 0.42
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCAACATAGTCAAT
Found at i:26727611 original size:17 final size:17
Alignment explanation
Indices: 26727589--26727621 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26727579 AGCCAAGTAC
26727589 GACTCAGTATAATAACG
1 GACTCAGTATAATAACG
26727606 GACTCAGTATAATAAC
1 GACTCAGTATAATAAC
26727622 CTCACCAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (17 bp):
GACTCAGTATAATAACG
Found at i:26732103 original size:46 final size:46
Alignment explanation
Indices: 26732045--26732178 Score: 189
Period size: 46 Copynumber: 2.9 Consensus size: 46
26732035 ATTTATGGTT
* * *
26732045 TCTTCCATCCATCCCACTACAAATCAAGGGTATAGGATTTGTACCA
1 TCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTACCA
* * **
26732091 TCTTTAATCCATCCCACTGCAACTCAGGGGTATTA-GATTTGTATTA
1 TCTTCAATCCATCCCACTACAACTCAGGGGTA-TAGGATTTGTACCA
26732137 TCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGT
1 TCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGT
26732179 GGCTTCTTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
45 2 0.03
46 73 0.95
47 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (46 bp):
TCTTCAATCCATCCCACTACAACTCAGGGGTATAGGATTTGTACCA
Found at i:26732187 original size:46 final size:46
Alignment explanation
Indices: 26732035--26732191 Score: 174
Period size: 46 Copynumber: 3.4 Consensus size: 46
26732025 GGGAGATAAA
* * * * *
26732035 ATTTATGGTTTCTTCCATCCATCCCACTACAAATCAAGGGTATAGG
1 ATTTGTGGCTTCTTCAATCCATCCCACTACAACTCAGGGGTATAGG
** * * *
26732081 ATTTGTACCATCTTTAATCCATCCCACTGCAACTCAGGGGTATTA-G
1 ATTTGTGGCTTCTTCAATCCATCCCACTACAACTCAGGGGTA-TAGG
**
26732127 ATTTGT-ATTATCTTCAATCCATCCCACTACAACTCAGGGGTATAGG
1 ATTTGTGGCT-TCTTCAATCCATCCCACTACAACTCAGGGGTATAGG
26732173 ATTTGTGGCTTCTTCAATC
1 ATTTGTGGCTTCTTCAATC
26732192 AATTTGATCT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
46 85 0.94
47 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.34
Consensus pattern (46 bp):
ATTTGTGGCTTCTTCAATCCATCCCACTACAACTCAGGGGTATAGG
Found at i:26732652 original size:65 final size:64
Alignment explanation
Indices: 26732578--26732748 Score: 166
Period size: 53 Copynumber: 2.8 Consensus size: 64
26732568 ACAATGGACG
*
26732578 AGAAGGAAATTGATTAGGAGCATAGCTCGAAATGAATAAATTAATTAAAGATAACAAATGCAATA
1 AGAAGGAAATTGATT-GGAGCATAGCTCGAAATGAATAAATTAATCAAAGATAACAAATGCAATA
* * * *
26732643 AGAAGG-AA---A-T----CA-A-CTCGAAATGAATGAGTTAATCAAAGATAGCAAATGTAATA
1 AGAAGGAAATTGATTGGAGCATAGCTCGAAATGAATAAATTAATCAAAGATAACAAATGCAATA
* * * *
26732696 AGAAGGAAATTGATTGGTAGCGTAGCTCAAAATGAATACAGTAATCAAAGATA
1 AGAAGGAAATTGATTGG-AGCATAGCTCGAAATGAATAAATTAATCAAAGATA
26732749 GTAAATTCAA
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
53 41 0.49
54 3 0.04
55 2 0.02
57 1 0.01
58 1 0.01
60 1 0.01
61 1 0.01
63 1 0.01
64 3 0.04
65 29 0.35
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.22
Consensus pattern (64 bp):
AGAAGGAAATTGATTGGAGCATAGCTCGAAATGAATAAATTAATCAAAGATAACAAATGCAATA
Found at i:26741097 original size:15 final size:15
Alignment explanation
Indices: 26741077--26741111 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
26741067 ATACATACTC
26741077 AATAAA-AATAAAATA
1 AATAAATAAT-AAATA
26741092 AATAAATAATAAATA
1 AATAAATAATAAATA
26741107 AATAA
1 AATAA
26741112 TGAATTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.84
16 3 0.16
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AATAAATAATAAATA
Found at i:26741102 original size:11 final size:11
Alignment explanation
Indices: 26741077--26741112 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
26741067 ATACATACTC
26741077 AATAA-AAAT-
1 AATAATAAATA
26741086 AA-AATAAATA
1 AATAATAAATA
26741096 AATAATAAATA
1 AATAATAAATA
26741107 AATAAT
1 AATAAT
26741113 GAATTGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.08
9 6 0.25
10 2 0.08
11 14 0.58
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
AATAATAAATA
Found at i:26743002 original size:45 final size:46
Alignment explanation
Indices: 26742946--26743057 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 46
26742936 AATCTATTCC
* *
26742946 ACTGGAACTTCAAAGAGGTAAGAATTG-GTAATTTCAACCTGCTCT
1 ACTGCAACTTCAAAGAGATAAGAATTGTGTAATTTCAACCTGCTCT
** ** * * *
26742991 ACTGCAACTTCAGGGAGATAAGGCTTGTGTATTTTTATCCTGCTCT
1 ACTGCAACTTCAAAGAGATAAGAATTGTGTAATTTCAACCTGCTCT
*
26743037 ACTGTAACTTCAAAGAGATAA
1 ACTGCAACTTCAAAGAGATAA
26743058 AGACTGTGGC
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 21 0.39
46 33 0.61
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (46 bp):
ACTGCAACTTCAAAGAGATAAGAATTGTGTAATTTCAACCTGCTCT
Found at i:26743365 original size:143 final size:143
Alignment explanation
Indices: 26743166--26743523 Score: 457
Period size: 143 Copynumber: 2.5 Consensus size: 143
26743156 TTTCAACCTG
* * ** * * *
26743166 CTCCACTGCAACTTTAAGGAGATAAGGCTAGTGGCTTTGATCTGCTTCACTACAACTTCAGGAAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * **
26743231 ATAAGATCTGCCATAATTTGTAGCTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGC
66 ATAAGATCTGCCATAATTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATCCGC
* *
26743296 TATCTTTAGTCTG
131 TATCTTCAGTCTA
* * * * *
26743309 CTCTGCTGCAACTTCAGGGAGATAAGACTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGGAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
26743374 ATAA-AGTTTTCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCATGGAAATAAGATCCG
66 ATAAGA-TCTGCCATAATTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATCCG
26743438 CTATCTTCAGTCTA
130 CTATCTTCAGTCTA
* * * *
26743452 CTCCGCAGCAACTTCAAGAAGAAAAGGCTAGTGGCTGCAATCTGCTCCACTGCAACTTCAGGGAG
1 CTCCGCTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
26743517 ATAAGAT
66 ATAAGAT
26743524 TCACCATTAT
Statistics
Matches: 181, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
142 1 0.01
143 179 0.99
144 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (143 bp):
CTCCGCTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATCTGCCATAATTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATCCGC
TATCTTCAGTCTA
Found at i:26746957 original size:20 final size:20
Alignment explanation
Indices: 26746921--26746959 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26746911 CCCACGTTGA
*
26746921 CCCATTTTCTCTGCTTTTTG
1 CCCATTTTCGCTGCTTTTTG
26746941 CCCATTTCTCGCT-CTTTTT
1 CCCATTT-TCGCTGCTTTTT
26746960 ACTCTCCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.05, C:0.33, G:0.08, T:0.54
Consensus pattern (20 bp):
CCCATTTTCGCTGCTTTTTG
Found at i:26747601 original size:17 final size:16
Alignment explanation
Indices: 26747578--26747619 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
26747568 GAGATTGAAT
26747578 TGAAAAATTACCTAAC
1 TGAAAAATTACCTAAC
26747594 TAGAAAAA-TA-CTAAC
1 T-GAAAAATTACCTAAC
26747609 TGAAAAATTAC
1 TGAAAAATTAC
26747620 ATTCCTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
14 6 0.26
15 8 0.35
16 3 0.13
17 6 0.26
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (16 bp):
TGAAAAATTACCTAAC
Found at i:26747609 original size:15 final size:15
Alignment explanation
Indices: 26747578--26747616 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 15
26747568 GAGATTGAAT
26747578 TGAAAAATTACCTAAC
1 TGAAAAA-TACCTAAC
26747594 TAGAAAAATA-CTAAC
1 T-GAAAAATACCTAAC
26747609 TGAAAAAT
1 TGAAAAAT
26747617 TACATTCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.32
15 6 0.27
16 3 0.14
17 6 0.27
ACGTcount: A:0.56, C:0.13, G:0.08, T:0.23
Consensus pattern (15 bp):
TGAAAAATACCTAAC
Found at i:26748931 original size:20 final size:21
Alignment explanation
Indices: 26748901--26748939 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26748891 AGTAAGTTAA
*
26748901 AAAATAAATAAAGATAAAAGT
1 AAAATAAATAAAAATAAAAGT
26748922 AAAA-AAATAAAAATAAAA
1 AAAATAAATAAAAATAAAA
26748940 AGTCTTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAAGT
Found at i:26748933 original size:14 final size:15
Alignment explanation
Indices: 26748900--26748940 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
26748890 AAGTAAGTTA
26748900 AAAAATAAATAAAGAT
1 AAAAATAAA-AAAGAT
*
26748916 AAAAGTAAAAAA-AT
1 AAAAATAAAAAAGAT
26748930 AAAAATAAAAA
1 AAAAATAAAAA
26748941 GTCTTCAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 12 0.52
15 3 0.13
16 8 0.35
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (15 bp):
AAAAATAAAAAAGAT
Found at i:26754421 original size:26 final size:25
Alignment explanation
Indices: 26754391--26754443 Score: 97
Period size: 26 Copynumber: 2.1 Consensus size: 25
26754381 CACAGGAAGT
26754391 AAATTGGGGAAATACTTTTGGGAAAA
1 AAATTGGGGAAATACTTTT-GGAAAA
26754417 AAATTGGGGAAATACTTTTGGAAAA
1 AAATTGGGGAAATACTTTTGGAAAA
26754442 AA
1 AA
26754444 CTGATTGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.45, C:0.04, G:0.25, T:0.26
Consensus pattern (25 bp):
AAATTGGGGAAATACTTTTGGAAAA
Found at i:26764585 original size:26 final size:26
Alignment explanation
Indices: 26764556--26764689 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
26764546 TTATACAAAT
26764556 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26764582 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26764608 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26764634 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26764660 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26764686 TGAT
1 TGAT
26764690 GGGAATTTCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26783136 original size:25 final size:26
Alignment explanation
Indices: 26783094--26783198 Score: 173
Period size: 25 Copynumber: 4.2 Consensus size: 26
26783084 TGGTACAAAT
26783094 TGATAATGGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGGTTAGGTAAATGTTCCA
26783121 TGATAAT-GGTTAGGTAAAT-TT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
26783144 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26783170 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26783195 TGAT
1 TGAT
26783199 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 36 0.48
26 9 0.12
27 7 0.09
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26783160 original size:49 final size:52
Alignment explanation
Indices: 26783094--26783198 Score: 189
Period size: 49 Copynumber: 2.1 Consensus size: 52
26783084 TGGTACAAAT
26783094 TGATAATGGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAAT-TT-CA
1 TGATAATGGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
26783144 TGATAAT-GGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
26783195 TGAT
1 TGAT
26783199 GGGAATTTCA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
49 38 0.72
50 9 0.17
51 6 0.11
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (52 bp):
TGATAATGGGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTCCA
Found at i:26790192 original size:26 final size:26
Alignment explanation
Indices: 26790163--26790270 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
26790153 TAATACAAAT
26790163 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26790189 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26790215 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26790241 TGATAATGGGTTAGGTAAATGTTCCT
1 TGATAATGGGTTAGGTAAATGTTCCA
26790267 TGAT
1 TGAT
26790271 GGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26796525 original size:12 final size:12
Alignment explanation
Indices: 26796497--26796531 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
26796487 TACATATCTA
*
26796497 TTCATATAAACAT
1 TTCATAT-AACAC
26796510 TTCATATAACAC
1 TTCATATAACAC
26796522 TTCATATAAC
1 TTCATATAAC
26796532 TATTTACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (12 bp):
TTCATATAACAC
Found at i:26796609 original size:13 final size:13
Alignment explanation
Indices: 26796589--26796697 Score: 92
Period size: 13 Copynumber: 8.3 Consensus size: 13
26796579 GTATAACTGA
26796589 TTCATATAACCAT
1 TTCATATAACCAT
** *
26796602 TTTGTATATCCATT
1 TTCATATAACCA-T
* *
26796616 TTTATATAACCAA
1 TTCATATAACCAT
* *
26796629 TTCTTATAATCAT
1 TTCATATAACCAT
* *
26796642 TTCACATAACCAA
1 TTCATATAACCAT
* *
26796655 TTCGTATAACCAA
1 TTCATATAACCAT
26796668 TTCATATAACCAT
1 TTCATATAACCAT
* *
26796681 TTCGTATAGCCAT
1 TTCATATAACCAT
26796694 TTCA
1 TTCA
26796698 AACTGTTAAC
Statistics
Matches: 74, Mismatches: 21, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
13 63 0.85
14 11 0.15
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:26796697 original size:26 final size:26
Alignment explanation
Indices: 26796589--26796697 Score: 119
Period size: 26 Copynumber: 4.2 Consensus size: 26
26796579 GTATAACTGA
* * *
26796589 TTCATATAACCATTTTGTATATCCATT
1 TTCATATAACCAATTCGTATAACCA-T
* * *
26796616 TTTATATAACCAATTCTTATAATCAT
1 TTCATATAACCAATTCGTATAACCAT
* *
26796642 TTCACATAACCAATTCGTATAACCAA
1 TTCATATAACCAATTCGTATAACCAT
* *
26796668 TTCATATAACCATTTCGTATAGCCAT
1 TTCATATAACCAATTCGTATAACCAT
26796694 TTCA
1 TTCA
26796698 AACTGTTAAC
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
26 48 0.72
27 19 0.28
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (26 bp):
TTCATATAACCAATTCGTATAACCAT
Found at i:26800761 original size:14 final size:15
Alignment explanation
Indices: 26800736--26800764 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26800726 ATGATGTGTT
26800736 GATGTCTTGGTTGTA
1 GATGTCTTGGTTGTA
26800751 GATGT-TTGGTTGTA
1 GATGTCTTGGTTGTA
26800765 TGTATATGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.03, G:0.34, T:0.48
Consensus pattern (15 bp):
GATGTCTTGGTTGTA
Found at i:26801223 original size:30 final size:31
Alignment explanation
Indices: 26801189--26801255 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
26801179 CGGGACACGG
*
26801189 GCGTGTGTGTCCACA-CGCCTGCCCACACAA
1 GCGTGTGTGTCCACATAGCCTGCCCACACAA
*
26801219 GCGTGTGTGTCCACATAGCCTGCCCACACAG
1 GCGTGTGTGTCCACATAGCCTGCCCACACAA
26801250 GCGTGT
1 GCGTGT
26801256 CCCATATCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 15 0.44
31 19 0.56
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.19
Consensus pattern (31 bp):
GCGTGTGTGTCCACATAGCCTGCCCACACAA
Found at i:26802562 original size:25 final size:25
Alignment explanation
Indices: 26802512--26802625 Score: 149
Period size: 25 Copynumber: 4.6 Consensus size: 25
26802502 TCTCTCGAGC
* ***
26802512 ATAT-ACGGGAAGCTTATGTAATCT
1 ATATAACGGGAAGCTTATTTGGGCT
* *
26802536 ATGTAATGGGAAGCTTATTTGGGCT
1 ATATAACGGGAAGCTTATTTGGGCT
26802561 ATATAACGGGAAGCTTATTTGGGCT
1 ATATAACGGGAAGCTTATTTGGGCT
*
26802586 ATATAACGGGAAGCTTATCTGGGCT
1 ATATAACGGGAAGCTTATTTGGGCT
*
26802611 GTATAACGGGAAGCT
1 ATATAACGGGAAGCT
26802626 CATAAGAGCC
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
24 3 0.04
25 76 0.96
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (25 bp):
ATATAACGGGAAGCTTATTTGGGCT
Found at i:26803026 original size:2 final size:2
Alignment explanation
Indices: 26803019--26803053 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26803009 TTACAAATTC
26803019 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26803054 ACATTTCAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26809814 original size:26 final size:26
Alignment explanation
Indices: 26809774--26809823 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26809764 CGGTGAGTTT
*
26809774 AAATGTATTGTGTATTAAAAGAATGA
1 AAATGTATTGAGTATTAAAAGAATGA
*
26809800 AAATGTATTGAGTATTGAAAGAAT
1 AAATGTATTGAGTATTAAAAGAAT
26809824 TATTTGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.20, T:0.34
Consensus pattern (26 bp):
AAATGTATTGAGTATTAAAAGAATGA
Found at i:26814875 original size:26 final size:26
Alignment explanation
Indices: 26814842--26814891 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26814832 TGGTGAGTTG
*
26814842 AAATGTATTGTGTATTGAAAGAATGA
1 AAATGTATTGAGTATTGAAAGAATGA
26814868 AAATGTATTGAGTATTGAAAGAAT
1 AAATGTATTGAGTATTGAAAGAAT
26814892 TCTTTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (26 bp):
AAATGTATTGAGTATTGAAAGAATGA
Found at i:26824128 original size:19 final size:19
Alignment explanation
Indices: 26824106--26824164 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
26824096 ATACCAACCC
26824106 AAATTTATAAACATTAAAT
1 AAATTTATAAACATTAAAT
* * *
26824125 AAATTT-T--A-TTTTAAG
1 AAATTTATAAACATTAAAT
26824140 AAATTTATAAACATTAAAT
1 AAATTTATAAACATTAAAT
26824159 AAATTT
1 AAATTT
26824165 TATTTTAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
15 10 0.33
16 2 0.07
18 2 0.07
19 16 0.53
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (19 bp):
AAATTTATAAACATTAAAT
Found at i:26824144 original size:34 final size:34
Alignment explanation
Indices: 26824106--26824176 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
26824096 ATACCAACCC
26824106 AAATTTATAAACATTAAATAAATTTTATTTTAAG
1 AAATTTATAAACATTAAATAAATTTTATTTTAAG
26824140 AAATTTATAAACATTAAATAAATTTTATTTTAAG
1 AAATTTATAAACATTAAATAAATTTTATTTTAAG
26824174 AAA
1 AAA
26824177 CTGGAATTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (34 bp):
AAATTTATAAACATTAAATAAATTTTATTTTAAG
Found at i:26830130 original size:48 final size:48
Alignment explanation
Indices: 26829969--26830255 Score: 247
Period size: 48 Copynumber: 5.9 Consensus size: 48
26829959 GACCATGGAG
*
26829969 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGGT-
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--CC-TTA
* * * * * * *
26830019 ATATGCGAGTCAGTGTAAAACCAT-TTTGGAACATGGCATCGGCATTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTA
* * * *
26830066 TTATGTGAGCCAGTGTAAGACCATGTCTGGGACATAGCATTGGCCTTA
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTA
* * * * * *
26830114 ATATGCGAGCCAGTGTAAGACCATATTTGGAACATGGCATCGGCATTG
1 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTA
* * * * * **
26830162 TTAT-ATGTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
1 ATATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTTA
* * *
26830211 TGTATGAGAGCCAGTGTAAGACCATGTCCGAGACATGGCATCGGC
1 -ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
26830256 ATTTTACCCT
Statistics
Matches: 185, Mismatches: 46, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
46 1 0.01
47 21 0.11
48 90 0.49
49 16 0.09
50 56 0.30
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTA
Found at i:26830179 original size:96 final size:95
Alignment explanation
Indices: 26829975--26830258 Score: 354
Period size: 96 Copynumber: 2.9 Consensus size: 95
26829965 GGAGATATGA
* * * *
26829975 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGGT-ATATGCGAGTCAGTGTAAAA
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATTGGC-CC--TAATATGCGAGCCAGTGTAAGA
*
26830039 CCATTTTGGAACATGGCATCGGCATTGTTATGT
63 CCATTTTGGAACATGGCATCGGCATTGTTATAT
* * *
26830072 GAGCCAGTGTAAGACCATGTCTGGGACATAGCATTGGCCTTAATATGCGAGCCAGTGTAAGACCA
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATTGGCCCTAATATGCGAGCCAGTGTAAGACCA
26830137 TATTTGGAACATGGCATCGGCATTGTTATAT
66 T-TTTGGAACATGGCATCGGCATTGTTATAT
* * * * *
26830168 GTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATGTATGAGAGCCAGTGTAAGAC
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATTGGC-CCTA-ATATGCGAGCCAGTGTAAGAC
* **
26830233 CATGTCCGAGACATGGCATCGGCATT
64 CATTTTGGA-ACATGGCATCGGCATT
26830259 TTACCCTTTT
Statistics
Matches: 165, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
94 1 0.01
95 22 0.13
96 63 0.38
97 41 0.25
98 38 0.23
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (95 bp):
GAGCCAATGTAAGACCATGTCTGGGACATGGCATTGGCCCTAATATGCGAGCCAGTGTAAGACCA
TTTTGGAACATGGCATCGGCATTGTTATAT
Found at i:26836991 original size:96 final size:96
Alignment explanation
Indices: 26836827--26837017 Score: 364
Period size: 96 Copynumber: 2.0 Consensus size: 96
26836817 CAGATCGACA
*
26836827 CGAATACCTGATGCTGACACAATATGCCCCAGAAAACCAACTTCACTCAACCAAAATTTTACTGA
1 CGAATACCTGATGCTGACACAATATGCCCCAGAAAACCAACTTCACTCAACCAAAATTTTACTAA
*
26836892 ACTTTTCATATAACGCTTATCTCTCAGAGTT
66 ACTTTGCATATAACGCTTATCTCTCAGAGTT
26836923 CGAATACCTGATGCTGACACAATATGCCCCAGAAAACCAACTTCACTCAACCAAAATTTTACTAA
1 CGAATACCTGATGCTGACACAATATGCCCCAGAAAACCAACTTCACTCAACCAAAATTTTACTAA
26836988 ACTTTGCATATAACGCTTATCTCTCAGAGT
66 ACTTTGCATATAACGCTTATCTCTCAGAGT
26837018 CTGCAATACA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.27
Consensus pattern (96 bp):
CGAATACCTGATGCTGACACAATATGCCCCAGAAAACCAACTTCACTCAACCAAAATTTTACTAA
ACTTTGCATATAACGCTTATCTCTCAGAGTT
Found at i:26839387 original size:43 final size:42
Alignment explanation
Indices: 26839332--26839501 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 42
26839322 ATATCGTACA
*
26839332 ATGCCAACGTCCCAGATGTGGTCTTACATGCAATCACATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACG-AATCACATATCG
* *
26839375 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGA-TGTGGTCTTACACGAATCACATATCG
* ** *
26839416 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATAG
1 ATGCCAACGTCCCAGATGTGGTCTTACACG-AATCACATATCG
* * * *
26839459 ATGCCAACGTCCTAGATTTGGTCTTACATGAGAACACATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGA-ATCACATATCG
26839502 GAAATCCTAT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
41 26 0.25
42 20 0.19
43 58 0.55
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGAATCACATATCG
Found at i:26841368 original size:56 final size:56
Alignment explanation
Indices: 26841282--26841450 Score: 199
Period size: 56 Copynumber: 3.1 Consensus size: 56
26841272 TGCAACGTTA
26841282 GCCAATCCATACTCAGGATTATATCAAACTCGTCAAATGGTAACAACATTAAATCG
1 GCCAATCCATACTCAGGATTATATCAAACTCGTCAAATGGTAACAACATTAAATCG
* * * * *
26841338 GCCAATCCATACTCAGGATTATATCAAACTC-ACAATAGCATCGT-GCAGCGTT--A---
1 GCCAATCCATACTCAGGATTATATCAAACTCGTC-A-A--ATGGTAACAACATTAAATCG
*
26841391 GCCAATCCATACTCAGGATTATATCAAACTCGTCAAATGGTAACAATATTAAATCG
1 GCCAATCCATACTCAGGATTATATCAAACTCGTCAAATGGTAACAACATTAAATCG
26841447 GCCA
1 GCCA
26841451 GAAAACAATT
Statistics
Matches: 91, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
50 4 0.04
51 4 0.04
52 1 0.01
53 33 0.36
54 1 0.01
55 1 0.01
56 37 0.41
57 1 0.01
58 5 0.05
59 4 0.04
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (56 bp):
GCCAATCCATACTCAGGATTATATCAAACTCGTCAAATGGTAACAACATTAAATCG
Found at i:26841418 original size:53 final size:52
Alignment explanation
Indices: 26841258--26841421 Score: 181
Period size: 53 Copynumber: 3.0 Consensus size: 52
26841248 CTTTTGCAAT
26841258 TCACAACAGCATCGTGCAACGTTAGCCAATCCATACTCAGGATTATATCAAAC
1 TCACAA-AGCATCGTGCAACGTTAGCCAATCCATACTCAGGATTATATCAAAC
* * * *
26841311 TCGTC-AA--ATGGTAACAACATTAAATCGGCCAATCCATACTCAGGATTATATCAAAC
1 TC-ACAAAGCATCGT-GCAACGTT--A---GCCAATCCATACTCAGGATTATATCAAAC
*
26841367 TCACAATAGCATCGTGCAGCGTTAGCCAATCCATACTCAGGATTATATCAAAC
1 TCACAA-AGCATCGTGCAACGTTAGCCAATCCATACTCAGGATTATATCAAAC
26841420 TC
1 TC
26841422 GTCAAATGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
50 4 0.04
51 6 0.07
52 1 0.01
53 35 0.38
54 1 0.01
55 1 0.01
56 33 0.36
57 1 0.01
58 5 0.05
59 4 0.04
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.24
Consensus pattern (52 bp):
TCACAAAGCATCGTGCAACGTTAGCCAATCCATACTCAGGATTATATCAAAC
Found at i:26843030 original size:32 final size:33
Alignment explanation
Indices: 26842982--26843094 Score: 104
Period size: 33 Copynumber: 3.4 Consensus size: 33
26842972 GTACCTAAAT
*
26842982 TGTACAACTTGAAAAGGTTATGTACACTTTGTG
1 TGTACAACTTGAAAAGGTTAGGTACACTTTGTG
* *
26843015 TGTAC-ACTTGGAAAGGTTAGGTATACTTTGTG
1 TGTACAACTTGAAAAGGTTAGGTACACTTTGTG
* * ** * *
26843047 TATACCA-TATGAAAAGGAAAGGTATATTTTGTG
1 TGTACAACT-TGAAAAGGTTAGGTACACTTTGTG
*
26843080 TGTACGACTTCGAAA
1 TGTACAACTT-GAAA
26843095 GGAATGTACA
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
32 29 0.44
33 32 0.48
34 5 0.08
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (33 bp):
TGTACAACTTGAAAAGGTTAGGTACACTTTGTG
Found at i:26846714 original size:8 final size:8
Alignment explanation
Indices: 26846696--26846733 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
26846686 TTTAAGAAAT
26846696 TAATAATTA
1 TAATAA-TA
26846705 TAATAATA
1 TAATAATA
26846713 TAATAAT-
1 TAATAATA
26846720 TAATAATA
1 TAATAATA
26846728 TAATAA
1 TAATAA
26846734 AAGAAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.25
8 15 0.54
9 6 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAATAATA
Found at i:26846725 original size:15 final size:15
Alignment explanation
Indices: 26846705--26846733 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26846695 TTAATAATTA
26846705 TAATAATATAATAAT
1 TAATAATATAATAAT
26846720 TAATAATATAATAA
1 TAATAATATAATAA
26846734 AAGAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAATAATATAATAAT
Found at i:26846741 original size:24 final size:24
Alignment explanation
Indices: 26846693--26846743 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26846683 TTATTTAAGA
* *
26846693 AATTAATAATTATAATAATATAAT
1 AATTAATAATTATAATAAAAAAAT
26846717 AATTAATAA-TATAATAAAAGAAAT
1 AATTAATAATTATAATAAAA-AAAT
26846741 AAT
1 AAT
26846744 AAAAGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
AATTAATAATTATAATAAAAAAAT
Found at i:26846742 original size:12 final size:12
Alignment explanation
Indices: 26846727--26846751 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26846717 AATTAATAAT
26846727 ATAATAAAAGAA
1 ATAATAAAAGAA
26846739 ATAATAAAAGAA
1 ATAATAAAAGAA
26846751 A
1 A
26846752 AAAGAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
ATAATAAAAGAA
Found at i:26858797 original size:21 final size:21
Alignment explanation
Indices: 26858784--26858822 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26858774 AAACAGAACA
26858784 GGGAAAGAAAG-AAAGAAAAAT
1 GGGAAAGAAAGAAAAG-AAAAT
26858805 GGGAAAGAAA-AAAAGAAA
1 GGGAAAGAAAGAAAAGAAA
26858823 GAAAAATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (21 bp):
GGGAAAGAAAGAAAAGAAAAT
Found at i:26858814 original size:25 final size:24
Alignment explanation
Indices: 26858786--26858853 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 24
26858776 ACAGAACAGG
26858786 GAAAGAAAGAAAGAAAAATGGGAAA
1 GAAA-AAAGAAAGAAAAATGGGAAA
26858811 GAAAAAAAGAAAGAAAAATGGGAAA
1 G-AAAAAAGAAAGAAAAATGGGAAA
26858836 G-AAAAAGAAAGGAAAAAT
1 GAAAAAAGAAA-GAAAAAT
26858854 AAGGTTTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
23 9 0.22
24 7 0.17
25 22 0.54
26 3 0.07
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (24 bp):
GAAAAAAGAAAGAAAAATGGGAAA
Found at i:26858815 original size:12 final size:13
Alignment explanation
Indices: 26858794--26858841 Score: 71
Period size: 13 Copynumber: 3.8 Consensus size: 13
26858784 GGGAAAGAAA
26858794 GAAAGAAAAATGG
1 GAAAGAAAAATGG
**
26858807 GAAAGAAAAA-AA
1 GAAAGAAAAATGG
26858819 GAAAGAAAAATGG
1 GAAAGAAAAATGG
26858832 GAAAGAAAAA
1 GAAAGAAAAA
26858842 GAAAGGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.71, C:0.00, G:0.25, T:0.04
Consensus pattern (13 bp):
GAAAGAAAAATGG
Found at i:26866491 original size:13 final size:13
Alignment explanation
Indices: 26866473--26866497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26866463 AATATTGCAT
26866473 GAAAATTTTTATA
1 GAAAATTTTTATA
26866486 GAAAATTTTTAT
1 GAAAATTTTTAT
26866498 CAATTATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
GAAAATTTTTATA
Found at i:26867790 original size:33 final size:33
Alignment explanation
Indices: 26867701--26867792 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
26867691 GGTTATGTAC
* **
26867701 ACTTTGTGTGTA-CACTTGGAAATGTCAGGTAT
1 ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
* * *
26867733 ATTTTGTGTATACCA-TATGAAAAGGAAAGGTAT
1 ACTTTGTGTGTACCACT-TGGAAAGGAAAGGTAT
26867766 ACTTTGTGTGTACCACTTGGAAAGGAA
1 ACTTTGTGTGTACCACTTGGAAAGGAA
26867793 TGTACATCTT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
32 11 0.23
33 36 0.75
34 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
Found at i:26872460 original size:42 final size:41
Alignment explanation
Indices: 26872414--26872492 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 41
26872404 ACAGGTCCTA
* **
26872414 AACTGAAACCCATAAGGGTTACACTGAAGCTCGAAAGAACTG
1 AACTGAAACCCAAAAGGACTACACTGAAGCTC-AAAGAACTG
* *
26872456 AACTGAAACCTAAAAGGACTATACTGAAGCTCAAAGA
1 AACTGAAACCCAAAAGGACTACACTGAAGCTCAAAGA
26872493 GCTAAACAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 5 0.16
42 27 0.84
ACGTcount: A:0.44, C:0.20, G:0.19, T:0.16
Consensus pattern (41 bp):
AACTGAAACCCAAAAGGACTACACTGAAGCTCAAAGAACTG
Found at i:26878854 original size:22 final size:23
Alignment explanation
Indices: 26878829--26878874 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26878819 CAACCAAATC
26878829 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
26878851 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
26878874 A
1 A
26878875 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:26878880 original size:23 final size:23
Alignment explanation
Indices: 26878836--26878880 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26878826 ATCAATTCAA
*
26878836 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
26878859 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
26878881 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:26884760 original size:20 final size:21
Alignment explanation
Indices: 26884721--26884773 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
26884711 TCGTGTTTGC
*
26884721 CTTCAGTTTAGCTCTCATGAG
1 CTTCAGTTTAACTCTCATGAG
*
26884742 CTTCAG-TTAACTCTTATGAG
1 CTTCAGTTTAACTCTCATGAG
* *
26884762 TTTCAATTTAAC
1 CTTCAGTTTAAC
26884774 CCTAATTGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.42
Consensus pattern (21 bp):
CTTCAGTTTAACTCTCATGAG
Found at i:26884807 original size:43 final size:42
Alignment explanation
Indices: 26884758--26884838 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
26884748 TTAACTCTTA
26884758 TGAGTTTCAATTTAACCCTAATTGGGTTTCAGTTCAGCTTTTT
1 TGAGTTTCAATTTAACCCTAA-TGGGTTTCAGTTCAGCTTTTT
* * *
26884801 TGAGTTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCT
1 TGAGTTTCAATTTAACCCTAATGGGTTTCAGTTCAGCT
26884839 CCTATGAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 16 0.46
43 19 0.54
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (42 bp):
TGAGTTTCAATTTAACCCTAATGGGTTTCAGTTCAGCTTTTT
Found at i:26884826 original size:42 final size:42
Alignment explanation
Indices: 26884743--26884875 Score: 142
Period size: 42 Copynumber: 3.2 Consensus size: 42
26884733 TCTCATGAGC
* * * *
26884743 TTCAGTT-AACTCTTATGAGTTTCAATTTAACCCTAATTGGGT
1 TTCAGTTCAGCTCCTATGAGTTTCAGTTTAACCCTTA-TGGGT
** *
26884785 TTCAGTTCAGCTTTTTTGAGTTTCAGTTTAACCCTTATGGGT
1 TTCAGTTCAGCTCCTATGAGTTTCAGTTTAACCCTTATGGGT
* * * *
26884827 TTCCGTTCAGCTCCTATGAGCTTCCGTTCAACCCTTATGGGT
1 TTCAGTTCAGCTCCTATGAGTTTCAGTTTAACCCTTATGGGT
*
26884869 TCCAGTT
1 TTCAGTT
26884876 TAACAATTAT
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 52 0.68
43 24 0.32
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (42 bp):
TTCAGTTCAGCTCCTATGAGTTTCAGTTTAACCCTTATGGGT
Found at i:26884828 original size:21 final size:21
Alignment explanation
Indices: 26884722--26884879 Score: 86
Period size: 21 Copynumber: 7.5 Consensus size: 21
26884712 CGTGTTTGCC
* * * *
26884722 TTCAGTTTAGCTCTCATGAGC
1 TTCAGTTTAACCCTTATGAGT
*
26884743 TTCAG-TTAACTCTTATGAGT
1 TTCAGTTTAACCCTTATGAGT
* * *
26884763 TTCAATTTAACCCTAATTGGGT
1 TTCAGTTTAACCCTTA-TGAGT
* * ** *
26884785 TTCAGTTCAGCTTTTTTGAGT
1 TTCAGTTTAACCCTTATGAGT
*
26884806 TTCAGTTTAACCCTTATGGGT
1 TTCAGTTTAACCCTTATGAGT
* * * *
26884827 TTCCGTTCAGCTCC-TATGAGC
1 TTCAGTTTAAC-CCTTATGAGT
* * *
26884848 TTCCGTTCAACCCTTATGGGT
1 TTCAGTTTAACCCTTATGAGT
*
26884869 TCCAGTTTAAC
1 TTCAGTTTAAC
26884880 AATTATGTGC
Statistics
Matches: 101, Mismatches: 32, Indels: 8
0.72 0.23 0.06
Matches are distributed among these distances:
20 18 0.18
21 68 0.67
22 15 0.15
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (21 bp):
TTCAGTTTAACCCTTATGAGT
Found at i:26908093 original size:126 final size:126
Alignment explanation
Indices: 26907868--26908176 Score: 521
Period size: 126 Copynumber: 2.5 Consensus size: 126
26907858 AGTATAAGGC
* * *
26907868 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCTACGTGGGAG-TTTGTTTCCATAATTTTGCTGA
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTT-TTTCCGTAATTTTGCTAA
* *
26907932 CAGTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAATTTAT
65 CACTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
*
26907994 TTTTTCAGATACTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAAC
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAAC
26908059 ACTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
66 ACTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
* * *
26908120 TTTTTCAGATACTACTATAGCAAAAGAGCGTCCACATGGGAGCTTTTTTTCGTAATT
1 TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATT
26908177 AATAGTTAAT
Statistics
Matches: 172, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
126 169 0.98
127 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Consensus pattern (126 bp):
TTTTTCAGATACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCCGTAATTTTGCTAAC
ACTGCATCCTTCTTGAAGTGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAT
Found at i:26908323 original size:24 final size:24
Alignment explanation
Indices: 26908296--26908344 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
26908286 TTATTTTTTT
26908296 CTTAAAAATACTAAAACC-TTAAAC
1 CTTAAAAA-ACTAAAACCATTAAAC
* *
26908320 CTTAAAAACCTTAAACCATTAAAC
1 CTTAAAAAACTAAAACCATTAAAC
26908344 C
1 C
26908345 CTAACCATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (24 bp):
CTTAAAAAACTAAAACCATTAAAC
Found at i:26908329 original size:16 final size:17
Alignment explanation
Indices: 26908308--26908342 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
26908298 TAAAAATACT
26908308 AAAACCTTAAACC-TTA
1 AAAACCTTAAACCATTA
26908324 AAAACCTTAAACCATTA
1 AAAACCTTAAACCATTA
26908341 AA
1 AA
26908343 CCCTAACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAACCTTAAACCATTA
Found at i:26928422 original size:20 final size:19
Alignment explanation
Indices: 26928394--26928452 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
26928384 TAAAAATTTC
*
26928394 AAATATTAAAAAGTAGAAAA
1 AAATTTTAAAAA-TAGAAAA
* * *
26928414 AAATTTTAAAAATATATAG
1 AAATTTTAAAAATAGAAAA
*
26928433 AAATTTTAAAAATATAAAA
1 AAATTTTAAAAATAGAAAA
26928452 A
1 A
26928453 TTGCAATTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 22 0.67
20 11 0.33
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AAATTTTAAAAATAGAAAA
Found at i:26928484 original size:47 final size:46
Alignment explanation
Indices: 26928385--26928544 Score: 119
Period size: 47 Copynumber: 3.4 Consensus size: 46
26928375 AAATTTTAAT
* * * * * *
26928385 AAAAATTTCAAATATTAAAAAGTAGAAAAAAATTT-TAAAAATA-TAT
1 AAAAATTTTAAAAATTAAAAA-T-TACAAAATTTTATAAAAATAGTAA
* * **
26928431 AGAAATTTTAAAAATATAAAAATTGCAATTTTTTATAAAAATAGTAA
1 AAAAATTTTAAAAAT-TAAAAATTACAAAATTTTATAAAAATAGTAA
* * *
26928478 AAAAATTTAAAAAATTATAAAATTATAAAATTTTAT-AAAATTGTAA
1 AAAAATTTTAAAAATTA-AAAATTACAAAATTTTATAAAAATAGTAA
*
26928524 GAAAATTTTACAAAATGTAAA
1 AAAAATTTTA-AAAAT-TAAA
26928545 GAAATATAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
45 5 0.06
46 40 0.45
47 42 0.47
48 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (46 bp):
AAAAATTTTAAAAATTAAAAATTACAAAATTTTATAAAAATAGTAA
Found at i:26928549 original size:20 final size:21
Alignment explanation
Indices: 26928504--26928548 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
26928494 ATAAAATTAT
*
26928504 AAAATTTTATAAAATTGTAAG
1 AAAATTTTACAAAATTGTAAG
26928525 AAAATTTTACAAAA-TGTAAAG
1 AAAATTTTACAAAATTGT-AAG
26928546 AAA
1 AAA
26928549 TATAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (21 bp):
AAAATTTTACAAAATTGTAAG
Found at i:26928557 original size:47 final size:47
Alignment explanation
Indices: 26928461--26928554 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
26928451 AATTGCAATT
*
26928461 TTTTATAAAAATAGTAAAAAAATTTAAAAAATTATAAAATTATAAAA
1 TTTTATAAAAATAGTAAAAAAATTTAAAAAATTATAAAAATATAAAA
* * *
26928508 TTTTAT-AAAATTGTAAGAAAATTTTACAAAATGTA-AAGAAATATAAA
1 TTTTATAAAAATAGTAA-AAAAATTTAAAAAAT-TATAA-AAATATAAA
26928555 TTTCGTAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
46 9 0.22
47 21 0.52
48 10 0.25
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (47 bp):
TTTTATAAAAATAGTAAAAAAATTTAAAAAATTATAAAAATATAAAA
Found at i:26928823 original size:20 final size:20
Alignment explanation
Indices: 26928785--26928822 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26928775 TAATAAAAAT
*
26928785 TTAAAATTTTTATATTTTTA
1 TTAAAATTTATATATTTTTA
26928805 TTAAAATTTATAT-TTTTT
1 TTAAAATTTATATATTTTT
26928823 TCTAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTAAAATTTATATATTTTTA
Found at i:26932375 original size:2 final size:2
Alignment explanation
Indices: 26932370--26932394 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26932360 ATCATCGATT
26932370 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
26932395 TTTTAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:26933731 original size:17 final size:17
Alignment explanation
Indices: 26933709--26933744 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26933699 CGTTGCCTAC
26933709 AATCAGTCTAGATTTAG
1 AATCAGTCTAGATTTAG
26933726 AATCAGTCTAGATTTAG
1 AATCAGTCTAGATTTAG
26933743 AA
1 AA
26933745 AAATGATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (17 bp):
AATCAGTCTAGATTTAG
Found at i:26933840 original size:20 final size:20
Alignment explanation
Indices: 26933815--26933861 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
26933805 ACACCAGTAT
*
26933815 TTTTATTTTGAATTTTAGGA
1 TTTTATCTTGAATTTTAGGA
26933835 TTTTATCTTGAATTTTAGGA
1 TTTTATCTTGAATTTTAGGA
26933855 TTTTATC
1 TTTTATC
26933862 CGGAAAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.23, C:0.04, G:0.13, T:0.60
Consensus pattern (20 bp):
TTTTATCTTGAATTTTAGGA
Found at i:26934274 original size:55 final size:54
Alignment explanation
Indices: 26934204--26934308 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 54
26934194 ACATATTTAG
* * * * *
26934204 CCTCAATATTTACAAAGTTTTTCATTTTAGTT-TGAATTCTAAAAATAAATTTAAC
1 CCTCAAAATTTACAAAATTTGTCACTTTAATTCT-AATTCTAAAAA-AAATTTAAC
26934259 CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATT
1 CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATT
26934309 CAACAAATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
54 5 0.11
55 38 0.86
56 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.41
Consensus pattern (54 bp):
CCTCAAAATTTACAAAATTTGTCACTTTAATTCTAATTCTAAAAAAAATTTAAC
Found at i:26937058 original size:5 final size:5
Alignment explanation
Indices: 26937009--26937118 Score: 71
Period size: 5 Copynumber: 22.0 Consensus size: 5
26936999 ACAAACCCAT
* * * * *
26937009 CAGAA CA-AGA CAGAG CAGAA CAAAA CA-AA GCAAAA CTGAA TAGAA CAGAA
1 CAGAA CAGA-A CAGAA CAGAA CAGAA CAGAA -CAGAA CAGAA CAGAA CAGAA
* * * * * * * *
26937059 TAGAG CAGAG CAGAG CAGAG CAGAA CAGAA TAGAA CAGAA TAGAG CAGAA
1 CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA CAGAA
26937109 CAGAA CAGAA
1 CAGAA CAGAA
26937119 TAGAGCAGAG
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
4 3 0.04
5 77 0.93
6 3 0.04
ACGTcount: A:0.55, C:0.16, G:0.24, T:0.05
Consensus pattern (5 bp):
CAGAA
Found at i:26937064 original size:40 final size:40
Alignment explanation
Indices: 26937020--26937115 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
26937010 AGAACAAGAC
* *
26937020 AGAGCAGAACAAAACAAAGCAAAACTGAATAGAACAGAAT
1 AGAGCAGAACAGAACAAAGCAAAACAGAATAGAACAGAAT
* * * *
26937060 AGAGCAGAGCAGAGCAGAGCAGAACAGAATAGAACAGAAT
1 AGAGCAGAACAGAACAAAGCAAAACAGAATAGAACAGAAT
26937100 AGAGCAGAACAGAACA
1 AGAGCAGAACAGAACA
26937116 GAATAGAGCA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.55, C:0.16, G:0.24, T:0.05
Consensus pattern (40 bp):
AGAGCAGAACAGAACAAAGCAAAACAGAATAGAACAGAAT
Found at i:26937084 original size:30 final size:30
Alignment explanation
Indices: 26937050--26937138 Score: 135
Period size: 30 Copynumber: 3.0 Consensus size: 30
26937040 AAAACTGAAT
* *
26937050 AGAACAGAATAGAGCAGAGCAGAGCAGAGC
1 AGAACAGAATAGAGCAGAGAAGAGCAGAAC
*
26937080 AGAACAGAATAGAACAGA-ATAGAGCAGAAC
1 AGAACAGAATAGAGCAGAGA-AGAGCAGAAC
26937110 AGAACAGAATAGAGCAGAGAAGAGCAGAA
1 AGAACAGAATAGAGCAGAGAAGAGCAGAA
26937139 TGGAATAAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
30 52 0.98
31 1 0.02
ACGTcount: A:0.53, C:0.13, G:0.29, T:0.04
Consensus pattern (30 bp):
AGAACAGAATAGAGCAGAGAAGAGCAGAAC
Found at i:26937128 original size:5 final size:5
Alignment explanation
Indices: 26937060--26937137 Score: 57
Period size: 5 Copynumber: 15.6 Consensus size: 5
26937050 AGAACAGAAT
* ** * ** *
26937060 AGAGC AGAGC AGAGC AGAGC AGAAC AGAAT AGAAC AGAAT AGAGC AGAAC
1 AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC AGAGC
* ** *
26937110 AGAAC AGAAT AGAGC AGAGA AGAGC AGA
1 AGAGC AGAGC AGAGC AGAGC AGAGC AGA
26937138 ATGGAATAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.51, C:0.14, G:0.31, T:0.04
Consensus pattern (5 bp):
AGAGC
Found at i:26937133 original size:10 final size:10
Alignment explanation
Indices: 26937046--26937139 Score: 91
Period size: 10 Copynumber: 9.4 Consensus size: 10
26937036 AAGCAAAACT
*
26937046 GAATAGAACA
1 GAATAGAGCA
26937056 GAATAGAGCA
1 GAATAGAGCA
**
26937066 GAGCAGAGCA
1 GAATAGAGCA
** *
26937076 GAGCAGAACA
1 GAATAGAGCA
*
26937086 GAATAGAACA
1 GAATAGAGCA
26937096 GAATAGAGCA
1 GAATAGAGCA
* *
26937106 GAACAGAACA
1 GAATAGAGCA
26937116 GAATAGAGCA
1 GAATAGAGCA
26937126 GAGA-AGAGCA
1 GA-ATAGAGCA
26937136 GAAT
1 GAAT
26937140 GGAATAAAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
9 1 0.01
10 69 0.97
11 1 0.01
ACGTcount: A:0.52, C:0.13, G:0.29, T:0.06
Consensus pattern (10 bp):
GAATAGAGCA
Found at i:26940596 original size:2 final size:2
Alignment explanation
Indices: 26940589--26940619 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26940579 TTGTTGCCAT
26940589 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
26940620 TCATGATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:26943475 original size:17 final size:16
Alignment explanation
Indices: 26943425--26943483 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 16
26943415 TAATTACTTT
26943425 AATATTAAATT-AATA
1 AATATTAAATTAAATA
*
26943440 TAATATT-TATTAAGATA
1 -AATATTAAATTAA-ATA
26943457 AATATTAAATTAAATTA
1 AATATTAAATTAAA-TA
26943474 AATATTAAAT
1 AATATTAAAT
26943484 CTTATTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
15 3 0.08
16 14 0.38
17 20 0.54
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
AATATTAAATTAAATA
Found at i:26943530 original size:62 final size:59
Alignment explanation
Indices: 26943427--26943543 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
26943417 ATTACTTTAA
* * *
26943427 TATTAAATTAATATAATATTTATTAAGATAAATATTAAATTAAATTAAATATTAAATCT
1 TATTAAAATAATAGAATATTTATTAAGATAAATAGTAAATTAAATTAAATATTAAATCT
* *
26943486 TATTAAAATAATAGAATTTTTATCTACAAGATAAATAGTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTAT-T--AAGATAAATAGTAAATTAAATTAAATATTAA
26943544 TATAAACATT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
60 1 0.02
62 29 0.58
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATTAAGATAAATAGTAAATTAAATTAAATATTAAATCT
Found at i:26943616 original size:37 final size:36
Alignment explanation
Indices: 26943524--26943629 Score: 109
Period size: 37 Copynumber: 3.1 Consensus size: 36
26943514 AGATAAATAG
*
26943524 TAAATTAAATTTAATATT-AA-TA-T-AAA-CATTT
1 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
* *
26943555 TAATGTTAAA-TTAATA-AAATACTATTAAAATAATTAT
1 TAA-ATTAAATTTAATATTAA-ACTATTAAAATAATT-T
26943592 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
1 TAAATTAAATTTAATATTAAACTATTAAAATAATTT
26943628 TA
1 TA
26943630 TTTTTGGAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
31 10 0.17
32 6 0.10
33 2 0.03
34 1 0.02
35 3 0.05
36 11 0.18
37 25 0.42
38 2 0.03
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (36 bp):
TAAATTAAATTTAATATTAAACTATTAAAATAATTT
Found at i:26943729 original size:37 final size:36
Alignment explanation
Indices: 26943678--26943753 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
26943668 ATTCTAAAAA
*
26943678 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
26943714 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
26943751 TAA
1 TAA
26943754 AGTAATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:26943839 original size:62 final size:59
Alignment explanation
Indices: 26943766--26943879 Score: 156
Period size: 62 Copynumber: 1.9 Consensus size: 59
26943756 TAATTATCTT
* * * *
26943766 ATATTAAATTTAATTTAATGTTTATCTACAAGATAAATATTCTATTATTTTAATAAGATTTA
1 ATATTAAATTTAATCTAATATTTATCT---AGATAAATATTATATTAATTTAATAAGATTTA
*
26943828 ATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 ATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATA
26943880 TTAAAGTGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
59 22 0.47
62 25 0.53
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (59 bp):
ATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATAAGATTTA
Found at i:26952049 original size:34 final size:34
Alignment explanation
Indices: 26952006--26952075 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
26951996 TTCTCTTGAA
26952006 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
1 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
*
26952040 TTAAAGTGTGTGTAAATAATGACCCAATACTGTC
1 TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
26952074 TT
1 TT
26952076 TATATAGAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (34 bp):
TTAAAGTGTGTGTAAATAATGACCCAAGACTGTC
Found at i:26952624 original size:19 final size:17
Alignment explanation
Indices: 26952592--26952640 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
26952582 GACTGAAAAA
26952592 AAATAAA-G-AAATTGG
1 AAATAAAGGAAAATTGG
*
26952607 GAATAAGAGGTAAAATTGG
1 AAATAA-AGG-AAAATTGG
26952626 AAATAAAGGAAAATT
1 AAATAAAGGAAAATT
26952641 TAATAAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 5 0.18
16 1 0.04
17 7 0.25
18 3 0.11
19 12 0.43
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.20
Consensus pattern (17 bp):
AAATAAAGGAAAATTGG
Found at i:26953760 original size:75 final size:75
Alignment explanation
Indices: 26953607--26953760 Score: 195
Period size: 75 Copynumber: 2.1 Consensus size: 75
26953597 GTTATATATG
* * * **
26953607 TGTGCAAGTGTAAGACCATAGTTAAGCTATGATAATGTGATTAGTGTGTGATCATGGCAAGGCCA
1 TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGAAAAGTGTGTGATCATGGCAAGGCCA
*
26953672 TGGTAAAATA
66 TGATAAAATA
* * *
26953682 TGTGCAAGTGCAAGACCATAATTAAGTTGTGGCAATGTGACAAAGTGTGTGATCATGGCTAA-GC
1 TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGA-AAAGTGTGTGATCATGGC-AAGGC
26953746 CATGATAAAA-A
64 CATGATAAAATA
26953757 TGTG
1 TGTG
26953761 TACAAAACCA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 39 0.57
76 27 0.40
77 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (75 bp):
TGTGCAAGTGCAAGACCATAATTAAGCTATGACAATGTGAAAAGTGTGTGATCATGGCAAGGCCA
TGATAAAATA
Found at i:26959719 original size:48 final size:48
Alignment explanation
Indices: 26959629--26959723 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
26959619 GCTCAATATT
* * *
26959629 AGTCAATATTTTTCAATATCAATTAATTTATCAATATCATTCAGTAAC
1 AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAAC
* ** *
26959677 AGTCAATATTTTTCAATAGCGATCAATTGATCTTTATTATTCAGTAA
1 AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAA
26959724 TAGTTAACCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (48 bp):
AGTCAATATTTTTCAATAGCAATCAATTGATCAATATCATTCAGTAAC
Found at i:26965021 original size:24 final size:24
Alignment explanation
Indices: 26964989--26965039 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
26964979 TCGTGAATCT
*
26964989 TAATTCTCAAGACTCTATACAAAC
1 TAATTCTCAAGACTCCATACAAAC
26965013 TAATTCTCAAGACTCCATACAAAC
1 TAATTCTCAAGACTCCATACAAAC
26965037 TAA
1 TAA
26965040 CGATCGTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.27
Consensus pattern (24 bp):
TAATTCTCAAGACTCCATACAAAC
Found at i:26967459 original size:12 final size:13
Alignment explanation
Indices: 26967444--26967477 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
26967434 TTTTCAAATT
*
26967444 AATTTTTTAAT-A
1 AATTCTTTAATCA
26967456 AATTCTTTAATCA
1 AATTCTTTAATCA
26967469 AATTCTTTA
1 AATTCTTTA
26967478 GTTAAACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (13 bp):
AATTCTTTAATCA
Found at i:26971762 original size:30 final size:31
Alignment explanation
Indices: 26971726--26971809 Score: 127
Period size: 30 Copynumber: 2.8 Consensus size: 31
26971716 TTTTTATTTA
26971726 AAAATAATAGGAAATTATTAAAAAGT-GTTT
1 AAAATAATAGGAAATTATTAAAAAGTAGTTT
* * *
26971756 AAAATAATAGGAATTTCTTAAAAAGTATTTT
1 AAAATAATAGGAAATTATTAAAAAGTAGTTT
26971787 AAAA-AATAGGAAATTATTAAAAA
1 AAAATAATAGGAAATTATTAAAAA
26971810 TTAAAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 41 0.85
31 7 0.15
ACGTcount: A:0.56, C:0.01, G:0.11, T:0.32
Consensus pattern (31 bp):
AAAATAATAGGAAATTATTAAAAAGTAGTTT
Found at i:26972754 original size:16 final size:16
Alignment explanation
Indices: 26972733--26972794 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
26972723 TTTGGTTCAG
*
26972733 TGTAATGGAATAGGGT
1 TGTAATGGAATAGAGT
**
26972749 TGTAATGGAATAGAAC
1 TGTAATGGAATAGAGT
26972765 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGT
*
26972781 TGTAATAGAATAGA
1 TGTAATGGAATAGA
26972795 ACTGTAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:26972769 original size:32 final size:32
Alignment explanation
Indices: 26972733--26972802 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
26972723 TTTGGTTCAG
* *
26972733 TGTAATGGAATAGGGTTGTAATGGAATAGAAC
1 TGTAATGGAATAGAGTTGTAATAGAATAGAAC
26972765 TGTAATGGAATAGAGTTGTAATAGAATAGAAC
1 TGTAATGGAATAGAGTTGTAATAGAATAGAAC
26972797 TGTAAT
1 TGTAAT
26972803 AACAATTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.40, C:0.03, G:0.27, T:0.30
Consensus pattern (32 bp):
TGTAATGGAATAGAGTTGTAATAGAATAGAAC
Found at i:26972800 original size:16 final size:16
Alignment explanation
Indices: 26972749--26972803 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
26972739 GGAATAGGGT
*
26972749 TGTAATGGAATAGAAC
1 TGTAATAGAATAGAAC
* **
26972765 TGTAATGGAATAGAGT
1 TGTAATAGAATAGAAC
26972781 TGTAATAGAATAGAAC
1 TGTAATAGAATAGAAC
26972797 TGTAATA
1 TGTAATA
26972804 ACAATTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.29
Consensus pattern (16 bp):
TGTAATAGAATAGAAC
Found at i:26972874 original size:44 final size:45
Alignment explanation
Indices: 26972788--26972875 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 45
26972778 AGTTGTAATA
26972788 GAATAGAACTGTAATAACAATTCAATTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAACAATTCAATTGTTTGGTTGAATGGAATG
* *
26972833 GAATAGAACTGTAATAA-TATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAACTGTAATAACAATTCAAT-TGTTTGGTTGAATGGAAT
26972876 AAAGTTGTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
43 1 0.03
44 22 0.55
45 17 0.43
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (45 bp):
GAATAGAACTGTAATAACAATTCAATTGTTTGGTTGAATGGAATG
Found at i:26973039 original size:61 final size:60
Alignment explanation
Indices: 26972974--26973126 Score: 150
Period size: 58 Copynumber: 2.5 Consensus size: 60
26972964 TTTAATAGGA
** *
26972974 TTATTATTAGATATAATTTAATAAAAATAATAATACATAATTTAACCCTATT-TTAATAAAT
1 TTATTATTA-ATATAA-TTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
* * * *
26973035 TTATTATTAATTATAATT--TAACAATAATAATATATAATTTAATAATATTCTTAATATAG
1 TTATTATTAA-TATAATTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
**
26973094 CAATTATTAAAATATAAATTAATAAAAATAATA
1 TTATTATT--AATAT-AATTAATAAAAATAATA
26973127 TATAATATTA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
58 26 0.35
59 13 0.17
60 6 0.08
61 20 0.27
63 10 0.13
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (60 bp):
TTATTATTAATATAATTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
Found at i:26973070 original size:21 final size:20
Alignment explanation
Indices: 26973042--26973081 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26973032 AATTTATTAT
26973042 TAATTATAATTTAACAATAA
1 TAATTATAATTTAACAATAA
*
26973062 TAATATATAATTTAATAATA
1 TAAT-TATAATTTAACAATA
26973082 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTATAATTTAACAATAA
Found at i:26973142 original size:22 final size:21
Alignment explanation
Indices: 26973105--26973150 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
26973095 AATTATTAAA
26973105 ATATAAATTAATAAAAATAAT
1 ATATAAATTAATAAAAATAAT
26973126 ATATAATATTACA-AAAAATAAT
1 ATATAA-ATTA-ATAAAAATAAT
26973148 ATA
1 ATA
26973151 CAACCTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATAAATTAATAAAAATAAT
Found at i:26973283 original size:12 final size:12
Alignment explanation
Indices: 26973253--26973287 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
26973243 TCTATGTTAC
26973253 TTAAAGAATAAT
1 TTAAAGAATAAT
26973265 TTAAAAGAATAAT
1 TT-AAAGAATAAT
26973278 TTAAAGAATA
1 TTAAAGAATA
26973288 TATTGTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:26978054 original size:18 final size:17
Alignment explanation
Indices: 26978015--26978056 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
26978005 TCTCTCTCCT
*
26978015 TTTTTTTTGTTTTTTAA
1 TTTTATTTGTTTTTTAA
*
26978032 -ATTATTTGTTTTTTATA
1 TTTTATTTGTTTTTTA-A
26978049 TTTTATTT
1 TTTTATTT
26978057 TGCTTAGCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 13 0.65
17 1 0.05
18 6 0.30
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTATTTGTTTTTTAA
Found at i:26979709 original size:16 final size:17
Alignment explanation
Indices: 26979679--26979713 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26979669 ATTCTGTCTT
*
26979679 ATTTTTATCATTTTAAA
1 ATTTTTATCACTTTAAA
26979696 ATTTTT-TCACTTTAAA
1 ATTTTTATCACTTTAAA
26979712 AT
1 AT
26979714 AAAATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTTATCACTTTAAA
Found at i:26987009 original size:4 final size:4
Alignment explanation
Indices: 26987000--26987024 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26986990 GAGCGGCTGA
26987000 GCCT GCCT GCCT GCCT GCCT GCCT G
1 GCCT GCCT GCCT GCCT GCCT GCCT G
26987025 AGATGTCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (4 bp):
GCCT
Found at i:26990969 original size:5 final size:5
Alignment explanation
Indices: 26990959--26990983 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26990949 ACTGATAGCC
26990959 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
26990984 TATAGGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:26994579 original size:33 final size:33
Alignment explanation
Indices: 26994541--26994647 Score: 110
Period size: 33 Copynumber: 3.3 Consensus size: 33
26994531 ATGATACAAT
** *
26994541 TTGAAAAGGTTAGGTATACTTTGTGTATACCA-
1 TTGAAAAGGAAAGGTATACTTTCTGTATACCAC
* *
26994573 TATGAAAAGGAAATGTATGCTTTCTGTATACCAC
1 T-TGAAAAGGAAAGGTATACTTTCTGTATACCAC
* * * *
26994607 TTGAAAAGGAAAGGTACACTATATGTGTA-CAC
1 TTGAAAAGGAAAGGTATACTTTCTGTATACCAC
26994639 TTGAAAAGG
1 TTGAAAAGG
26994648 CTATGTGCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
32 13 0.21
33 48 0.77
34 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (33 bp):
TTGAAAAGGAAAGGTATACTTTCTGTATACCAC
Found at i:26994679 original size:33 final size:33
Alignment explanation
Indices: 26994630--26994746 Score: 137
Period size: 33 Copynumber: 3.6 Consensus size: 33
26994620 GTACACTATA
* *
26994630 TGTGTAC-ACTTGAAAAGGCTATGTGCACTTTG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* *
26994662 TGTGTACAAATTGAAAAGGGTATGTACACTTCG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* * * *
26994695 TGTGTACCACTTGAAAGGGGAATGTGCACCTCG
1 TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
* *
26994728 GGTGTACAACTAGAAAAGG
1 TGTGTACAACTTGAAAAGG
26994747 AAAGGTCTAT
Statistics
Matches: 70, Mismatches: 14, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
32 7 0.10
33 63 0.90
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (33 bp):
TGTGTACAACTTGAAAAGGGTATGTGCACTTCG
Found at i:27000738 original size:13 final size:13
Alignment explanation
Indices: 27000720--27000746 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27000710 GGAATATTGC
27000720 TTGAAAATTTTTA
1 TTGAAAATTTTTA
27000733 TTGAAAATTTTTA
1 TTGAAAATTTTTA
27000746 T
1 T
27000747 CAATTATATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTGAAAATTTTTA
Found at i:27001764 original size:32 final size:27
Alignment explanation
Indices: 27001694--27001748 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
27001684 TTGTAATTGG
27001694 TATGTACATGTAATAAATCAACCTTGA
1 TATGTACATGTAATAAATCAACCTTGA
*
27001721 TATGTACATGTAATAAATCAATCTTGA
1 TATGTACATGTAATAAATCAACCTTGA
27001748 T
1 T
27001749 TTGTGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (27 bp):
TATGTACATGTAATAAATCAACCTTGA
Found at i:27001997 original size:33 final size:33
Alignment explanation
Indices: 27001959--27002033 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
27001949 ATGGTACAAT
**
27001959 TTGAAAAGGTTAGGTATACTTTGTGTATACCA-
1 TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
*
27001991 TATGAAAAAGAAAGGTATACTTTGTGTATACCAC
1 T-TGAAAAGGAAAGGTATACTTTGTGTATACCAC
27002025 TTGAAAAGG
1 TTGAAAAGG
27002034 CTATGTGCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 1 0.03
33 35 0.95
34 1 0.03
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.32
Consensus pattern (33 bp):
TTGAAAAGGAAAGGTATACTTTGTGTATACCAC
Found at i:27002046 original size:33 final size:33
Alignment explanation
Indices: 27002009--27002132 Score: 122
Period size: 33 Copynumber: 3.8 Consensus size: 33
27001999 AGAAAGGTAT
* *
27002009 ACTTTGTGTATACCACTTGAAAAGGCTATGTGC
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* * * **
27002042 ACTTTGTGTGTTCAAATTGAAAAGGGTATGTAA
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* *
27002075 AATTTGTGTGTACCACTTGAAAAGGGAATGTGC
1 ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
* * * * *
27002108 ACCTCGGGTGTACAACTAGAAAAGG
1 ACTTTGTGTGTACCACTTGAAAAGG
27002133 AAAGGTCTAT
Statistics
Matches: 71, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGAAAAGGGTATGTGC
Found at i:27010691 original size:32 final size:31
Alignment explanation
Indices: 27010608--27010698 Score: 82
Period size: 32 Copynumber: 2.8 Consensus size: 31
27010598 TAAACGCGTG
27010608 ATTTTGTGAAATAATAACAAATATTAGCT-TTCTT
1 ATTTTGTGAAAT-ATAAC-AA-ATTA-CTATTCTT
*
27010642 -TTTTTTGAAATATTAACAAATTACTATT-TT
1 ATTTTGTGAAATA-TAACAAATTACTATTCTT
27010672 AATTTTGTGAAATGATAACAAA-TACTA
1 -ATTTTGTGAAAT-ATAACAAATTACTA
27010699 ACTTGGTATG
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
30 4 0.08
31 11 0.22
32 20 0.40
33 15 0.30
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (31 bp):
ATTTTGTGAAATATAACAAATTACTATTCTT
Found at i:27010764 original size:18 final size:18
Alignment explanation
Indices: 27010738--27010775 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
27010728 AAAACATAAT
27010738 AATAAAAAT-TATCGATAC
1 AATAAAAATGT-TCGATAC
*
27010756 AATATAAATGTTCGATAC
1 AATAAAAATGTTCGATAC
27010774 AA
1 AA
27010776 CGATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.29
Consensus pattern (18 bp):
AATAAAAATGTTCGATAC
Found at i:27015738 original size:44 final size:45
Alignment explanation
Indices: 27015685--27015787 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
27015675 TGTCTTTGAC
* ** *
27015685 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAACCCTGTCTCCAAAGCCATATTATAAT
** *
27015729 ATGGACTTACATGGCTCAACCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAACCCTGTCTCCAAAGCCATA-TTATAAT
27015775 ATGGACTTACATG
1 ATGGACTTACATG
27015788 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (45 bp):
ATGGACTTACATGAATCAACCCTGTCTCCAAAGCCATATTATAAT
Found at i:27015788 original size:46 final size:44
Alignment explanation
Indices: 27015705--27015792 Score: 140
Period size: 46 Copynumber: 2.0 Consensus size: 44
27015695 ATGAATTATT
*
27015705 CCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAAC
1 CCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAAC
*
27015749 CCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 CCTGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
27015793 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 17 0.43
46 23 0.57
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
CCTGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAAC
Found at i:27016166 original size:30 final size:30
Alignment explanation
Indices: 27016130--27016187 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
27016120 CCTCGACTCT
*
27016130 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
27016160 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
27016188 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:27016752 original size:25 final size:25
Alignment explanation
Indices: 27016724--27016781 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
27016714 TGCTCTCTGT
27016724 TTCTTTCTCTGTTTC-GTCTCTTCTA
1 TTCTTTCTCT-TTTCTGTCTCTTCTA
* *
27016749 TTCTGTT-TCTTTTCTTTCTTTTCTA
1 TTCT-TTCTCTTTTCTGTCTCTTCTA
27016774 TTCTTTCT
1 TTCTTTCT
27016782 TTTGTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 6 0.21
25 20 0.71
26 2 0.07
ACGTcount: A:0.03, C:0.24, G:0.05, T:0.67
Consensus pattern (25 bp):
TTCTTTCTCTTTTCTGTCTCTTCTA
Found at i:27016771 original size:14 final size:14
Alignment explanation
Indices: 27016744--27016789 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
27016734 GTTTCGTCTC
27016744 TTCTATTCTGTTTCTT
1 TTCT-TTCT-TTTCTT
*
27016760 TTCTTTCTTTTCTA
1 TTCTTTCTTTTCTT
*
27016774 TTCTTTCTTTTGTT
1 TTCTTTCTTTTCTT
27016788 TT
1 TT
27016790 ATGTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 19 0.70
15 4 0.15
16 4 0.15
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (14 bp):
TTCTTTCTTTTCTT
Found at i:27016806 original size:5 final size:5
Alignment explanation
Indices: 27016793--27016837 Score: 58
Period size: 5 Copynumber: 9.0 Consensus size: 5
27016783 TTGTTTTATG
27016793 TATATA TATAA TATAA TATAA TAT-A T-TAA TAATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA
27016838 AAACATAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
3 1 0.03
4 4 0.11
5 23 0.64
6 8 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:27016818 original size:19 final size:19
Alignment explanation
Indices: 27016794--27016836 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
27016784 TGTTTTATGT
27016794 ATATATATAAT-ATAATATA
1 ATATAT-TAATAATAATATA
27016813 ATATATTAATAATAATATA
1 ATATATTAATAATAATATA
27016832 ATATA
1 ATATA
27016837 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATTAATAATAATATA
Found at i:27016846 original size:24 final size:24
Alignment explanation
Indices: 27016800--27016865 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 24
27016790 ATGTATATAT
* *
27016800 ATAATATAATATAATATATTAATA
1 ATAATATAATATAATAAAATAATA
27016824 ATAATATAATATAA-AAACATAATCA
1 ATAATATAATATAATAAA-ATAAT-A
* **
27016849 TTCCTATAATATAATAA
1 ATAATATAATATAATAA
27016866 TATTTCTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 12 0.35
26 2 0.06
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATA
Found at i:27021933 original size:47 final size:47
Alignment explanation
Indices: 27021845--27021939 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 47
27021835 GACAAAACCT
** *
27021845 TGAATGTCCCCTACAACCATGTTACGTTCACCCGTATGCCTTCAATA
1 TGAATGTCCCCTACAACCATGTTACGTTCACCCACACGCCTTCAATA
** *
27021892 TGAATGTCCCCTACAACCATGTTATTTTTACCCACACGCCTTCAATA
1 TGAATGTCCCCTACAACCATGTTACGTTCACCCACACGCCTTCAATA
27021939 T
1 T
27021940 CCTTTTTCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (47 bp):
TGAATGTCCCCTACAACCATGTTACGTTCACCCACACGCCTTCAATA
Found at i:27022642 original size:18 final size:18
Alignment explanation
Indices: 27022595--27022655 Score: 70
Period size: 19 Copynumber: 3.4 Consensus size: 18
27022585 TAAAAAAACT
*
27022595 AAAAATAGAAAATCATAA
1 AAAAATAGAATATCATAA
27022613 AAAAATATGAATATCATAA
1 AAAAATA-GAATATCATAA
** *
27022632 AAATGTAGAAT-TTATAA
1 AAAAATAGAATATCATAA
27022649 AAAAATA
1 AAAAATA
27022656 TAAATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.28
18 11 0.31
19 15 0.42
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.25
Consensus pattern (18 bp):
AAAAATAGAATATCATAA
Found at i:27022661 original size:18 final size:18
Alignment explanation
Indices: 27022595--27022672 Score: 61
Period size: 19 Copynumber: 4.3 Consensus size: 18
27022585 TAAAAAAACT
* * *
27022595 AAAAATAGAAAATCATAA
1 AAAAATATAAATTTATAA
* *
27022613 AAAAATATGAA--TATCAT
1 AAAAATATAAATTTAT-AA
*
27022630 AAAAATGTAGAATTTATAA
1 AAAAATATA-AATTTATAA
27022649 AAAAATATAAATTTTATAA
1 AAAAATATAAA-TTTATAA
27022668 AAAAA
1 AAAAA
27022673 ATTACTAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
16 2 0.04
17 8 0.17
18 13 0.28
19 21 0.45
20 3 0.06
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAAATATAAATTTATAA
Found at i:27022669 original size:17 final size:17
Alignment explanation
Indices: 27022613--27022670 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
27022603 AAAATCATAA
* * *
27022613 AAAAATATGAATATCAT
1 AAAAATATAAATTTTAT
* *
27022630 AAAAATGTAGAATTTATAA
1 AAAAATATA-AATTT-TAT
27022649 AAAAATATAAATTTTAT
1 AAAAATATAAATTTTAT
27022666 AAAAA
1 AAAAA
27022671 AAATTACTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 14 0.44
18 9 0.28
19 9 0.28
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (17 bp):
AAAAATATAAATTTTAT
Found at i:27022991 original size:22 final size:22
Alignment explanation
Indices: 27022955--27022999 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
27022945 ATATATTTAA
**
27022955 TTTTTTATAGGTTTCCT-ATATT
1 TTTTTTATAAATTT-CTAATATT
27022977 TTTTTTATAAATTTCTAATATT
1 TTTTTTATAAATTTCTAATATT
27022999 T
1 T
27023000 AATATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTTTTATAAATTTCTAATATT
Found at i:27034894 original size:17 final size:17
Alignment explanation
Indices: 27034872--27034921 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
27034862 ATATTTTTCC
27034872 TTTCTTTTTTCTTACTT
1 TTTCTTTTTTCTTACTT
* *
27034889 TTTCTTTTTTTCGGTCCTT
1 TTTC-TTTTTTC-TTACTT
27034908 TTTCTTTTCTTCTT
1 TTTCTTTT-TTCTT
27034922 TAATTGTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 11 0.41
ACGTcount: A:0.02, C:0.20, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTCTTTTTTCTTACTT
Done.