Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_110
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 197764
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:7202 original size:20 final size:20
Alignment explanation
Indices: 7177--7226 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
7167 TGGCTTAAAA
7177 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
7197 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
7214 GTGGTAGTGGATT
1 TTGGTAGTGGATT
7227 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:16048 original size:20 final size:20
Alignment explanation
Indices: 16009--16049 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15999 AGATTTGTCT
* * *
16009 CATCACAGGCATTCTCATCC
1 CATCACAGACATCCTAATCC
16029 CATCACAGACATCCTAATCC
1 CATCACAGACATCCTAATCC
16049 C
1 C
16050 CACACGTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.41, G:0.07, T:0.22
Consensus pattern (20 bp):
CATCACAGACATCCTAATCC
Found at i:16272 original size:16 final size:16
Alignment explanation
Indices: 16239--16272 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
16229 TGGCACTGTT
* *
16239 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
16255 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
16271 AA
1 AA
16273 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:19093 original size:21 final size:21
Alignment explanation
Indices: 19067--19107 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
19057 AGACGAGCAA
* *
19067 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
19088 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
19108 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:21038 original size:16 final size:16
Alignment explanation
Indices: 21005--21038 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20995 GGAGATTGTT
* *
21005 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
21021 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
21037 AA
1 AA
21039 TACAAAGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:27425 original size:14 final size:14
Alignment explanation
Indices: 27403--27438 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
27393 CATAGGTATC
27403 TAAAAAAATGGAAA
1 TAAAAAAATGGAAA
* *
27417 TAAATAAATGTAAA
1 TAAAAAAATGGAAA
27431 TAAAAAAA
1 TAAAAAAA
27439 GTAAATACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.19
Consensus pattern (14 bp):
TAAAAAAATGGAAA
Found at i:27444 original size:13 final size:13
Alignment explanation
Indices: 27403--27445 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
27393 CATAGGTATC
*
27403 TAAAAAAATGGAAA
1 TAAAAAAA-GTAAA
*
27417 TAAATAAATGTAAA
1 TAAA-AAAAGTAAA
27431 TAAAAAAAGTAAA
1 TAAAAAAAGTAAA
27444 TA
1 TA
27446 CATATTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
13 10 0.40
14 12 0.48
15 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (13 bp):
TAAAAAAAGTAAA
Found at i:27592 original size:23 final size:23
Alignment explanation
Indices: 27564--27608 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
27554 ATATATTTGG
27564 ACTATA-AAATATACATAAAACAA
1 ACTATACAAATAT-CATAAAACAA
*
27587 ACTATACAAATATTATAAAACA
1 ACTATACAAATATCATAAAACA
27609 GAAATATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.24
Consensus pattern (23 bp):
ACTATACAAATATCATAAAACAA
Found at i:30008 original size:87 final size:87
Alignment explanation
Indices: 29862--30040 Score: 313
Period size: 87 Copynumber: 2.1 Consensus size: 87
29852 GGCGATAAGA
* *
29862 CTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATTTGCTATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
29927 CACTATTGCCAGGGAGACAAGG
66 CACTATTGCCAGGGAGACAAGG
* * *
29949 CTGGTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
30014 CACTATTGCCAGGGAGACAAGG
66 CACTATTGCCAGGGAGACAAGG
30036 CTGGT
1 CTGGT
30041 TGCGATCTGC
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (87 bp):
CTGGTATCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
CACTATTGCCAGGGAGACAAGG
Found at i:30181 original size:88 final size:88
Alignment explanation
Indices: 29865--30579 Score: 568
Period size: 88 Copynumber: 8.1 Consensus size: 88
29855 GATAAGACTG
* * * * * * *
29865 GTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATTTGCTAT-TTTCAACCTACTCCA
1 GTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTT-AACCTGCTCCG
**** * * *
29929 CTATTGCC-AGGGAGACAAGGCTG
65 CTGCCACCGAGGGAGGCAAGGTTA
* * * * * *
29952 GTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTAT-TTTCAACCTACTCCA
1 GTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTT-AACCTGCTCCG
**** * *
30016 CTATTGCC-AGGGAGACAAGGCT-
65 CTGCCACCGAGGGAGGCAAGGTTA
* * * * * * * * *
30038 G-GT-TGCGATCTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTG-TAATTTTTTAACCTGCTC
1 GTGTCTTCGATCTGCTTCACTGTCAG-TACAGGAAGGTAAAATCTGCT-A-TCTTTAACCTGCTC
30098 CGCTGCCACCGAGGGAGGCAAGGTTA
63 CGCTGCCACCGAGGGAGGCAAGGTTA
* *
30124 GTGTCTTCGATCTGCTTCACTGTCAGTACAGAAAGGTAAAATCTGCTATCTTTAACCTGCTCTGC
1 GTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTTAACCTGCTCCGC
30189 TGCCACCGAGGGAGGCAAGGTTA
66 TGCCACCGAGGGAGGCAAGGTTA
* * * * * * *
30212 GTGTCTTCGATCTACTCCGCTACTG-C-CTAGA-G-AGATAAGATCTG-TAATTTTTTTAACCTG
1 GTGTCTTCGATCTGCT--TC-ACTGTCAGTACAGGAAGGTAAAATCTGCT-A--TCTTTAACCTG
**
30272 CTCCGCTGCCACCGAGAAAGGCAAGGTTA
60 CTCCGCTGCCACCGAGGGAGGCAAGGTTA
* * *
30301 GTGTCTTCGAT-TAGCTTCACTGTTAGTACAGGAAGGCAAAGTCTGCTATCTTTAACCTGCTCCG
1 GTGTCTTCGATCT-GCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTTAACCTGCTCCG
30365 CTGCCACCGAGGGAGGCAAGGTTA
65 CTGCCACCGAGGGAGGCAAGGTTA
* * * * * * * * * * *
30389 GTGTCTTCGATCTACTCCGCT-ACTG-CCTAGGGAGATAAGATCTG-TAATTTTTTTTAACTTGC
1 GTGTCTTCGATCTGCTTCACTGTCAGTAC-AGGAAGGTAAAATCTGCT-A---TCTTTAACCTGC
30451 TCCGCTGCCACCGAGGGAGGCAAGGTTA
61 TCCGCTGCCACCGAGGGAGGCAAGGTTA
* * *
30479 ATGTCTTCGATTTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATCTTTAACCTGCTCCGC
1 GTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTTAACCTGCTCCGC
*
30544 TGCCACCAAGGGAGGCAAGGTTA
66 TGCCACCGAGGGAGGCAAGGTTA
30567 GTGTCTTCGATCT
1 GTGTCTTCGATCT
30580 ACTCTGCTAC
Statistics
Matches: 508, Mismatches: 88, Indels: 63
0.77 0.13 0.10
Matches are distributed among these distances:
82 1 0.00
83 16 0.03
84 28 0.06
85 16 0.03
86 9 0.02
87 108 0.21
88 173 0.34
89 69 0.14
90 66 0.13
91 20 0.04
92 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (88 bp):
GTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGTAAAATCTGCTATCTTTAACCTGCTCCGC
TGCCACCGAGGGAGGCAAGGTTA
Found at i:30539 original size:178 final size:177
Alignment explanation
Indices: 29937--30614 Score: 1001
Period size: 177 Copynumber: 3.9 Consensus size: 177
29927 CACTATTGCC
* * * * * *
29937 AGGGAGACAAGGCTGGTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTAT-
1 AGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATC
* * **** * * * * *
30001 TTTCAACCTACTCCACTATTGCC-AGGGAGACAAGGCT-G-GT-TGCGATCTGCTCCACTACTGC
66 TTT-AACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGC
*
30062 TTAGGGAGATAAGATCTGTAA-TTTTTTAACCTGCTCCGCTGCCACCG
130 CTAGGGAGATAAGATCTGTAATTTTTTTAACCTGCTCCGCTGCCACCG
* *
30109 AGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCAGTACAGAAAGGTAAAATCTGCTATC
1 AGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATC
*
30174 TTTAACCTGCTCTGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGCC
66 TTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGCC
*
30239 TAGAGAGATAAGATCTGTAATTTTTTTAACCTGCTCCGCTGCCACCG
131 TAGGGAGATAAGATCTGTAATTTTTTTAACCTGCTCCGCTGCCACCG
** * *
30286 AGAAAGGCAAGGTTAGTGTCTTCGAT-TAGCTTCACTGTTAGTACAGGAAGGCAAAGTCTGCTAT
1 AGGGAGGCAAGGTTAGTGTCTTCGATCT-GCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTAT
30350 CTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGC
65 CTTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGC
*
30415 CTAGGGAGATAAGATCTGTAATTTTTTTTAACTTGCTCCGCTGCCACCG
130 CTAGGGAGATAAGATCTGTAA-TTTTTTTAACCTGCTCCGCTGCCACCG
* *
30464 AGGGAGGCAAGGTTAATGTCTTCGATTTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATC
1 AGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATC
* *
30529 TTTAACCTGCTCCGCTGCCACCAAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCTGCTACTGCC
66 TTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGCC
30594 TAGGGAGATAAGATCTGTAAT
131 TAGGGAGATAAGATCTGTAAT
30615 CTTCAATTTA
Statistics
Matches: 459, Mismatches: 38, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
172 68 0.15
173 15 0.03
174 1 0.00
175 2 0.00
176 38 0.08
177 167 0.36
178 167 0.36
179 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (177 bp):
AGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAAATCTGCTATC
TTTAACCTGCTCCGCTGCCACCGAGGGAGGCAAGGTTAGTGTCTTCGATCTACTCCGCTACTGCC
TAGGGAGATAAGATCTGTAATTTTTTTAACCTGCTCCGCTGCCACCG
Found at i:32125 original size:15 final size:15
Alignment explanation
Indices: 32105--32151 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
32095 CCTTAGCCTC
32105 TCCATTTTTACTTTT
1 TCCATTTTTACTTTT
32120 TCCATTTTT-CATTTT
1 TCCATTTTTAC-TTTT
*
32135 TCCATTTTTATTTTT
1 TCCATTTTTACTTTT
32150 TC
1 TC
32152 ACATCTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 1 0.03
15 28 0.97
ACGTcount: A:0.13, C:0.19, G:0.00, T:0.68
Consensus pattern (15 bp):
TCCATTTTTACTTTT
Found at i:32127 original size:8 final size:8
Alignment explanation
Indices: 32105--32143 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
32095 CCTTAGCCTC
32105 TCCATTTT
1 TCCATTTT
*
32113 TAC-TTTT
1 TCCATTTT
32120 TCCATTTT
1 TCCATTTT
32128 T-CATTTT
1 TCCATTTT
32135 TCCATTTT
1 TCCATTTT
32143 T
1 T
32144 ATTTTTTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 13 0.48
8 14 0.52
ACGTcount: A:0.13, C:0.21, G:0.00, T:0.67
Consensus pattern (8 bp):
TCCATTTT
Found at i:32163 original size:15 final size:15
Alignment explanation
Indices: 32105--32163 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
32095 CCTTAGCCTC
* *
32105 TCCATTTTTACTTTT
1 TCCATCTTTATTTTT
*
32120 TCCATTTTTCA-TTTT
1 TCCATCTTT-ATTTTT
*
32135 TCCATTTTTATTTTT
1 TCCATCTTTATTTTT
32150 TCACATCTTT-TTTT
1 TC-CATCTTTATTTT
32164 CTTCTCTTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
14 1 0.03
15 32 0.80
16 7 0.17
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.68
Consensus pattern (15 bp):
TCCATCTTTATTTTT
Found at i:32701 original size:25 final size:24
Alignment explanation
Indices: 32669--32721 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
32659 GGTTTTTTCG
32669 TTTTTGTT-TTTATTTCTTTGTTCTT
1 TTTTTGTTCTTTATTTC-TT-TTCTT
*
32694 TTTTTGTTCTTTTTTTCTTTTCTT
1 TTTTTGTTCTTTATTTCTTTTCTT
32718 TTTT
1 TTTT
32722 CCCTCTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 9 0.35
25 10 0.38
26 7 0.27
ACGTcount: A:0.02, C:0.09, G:0.06, T:0.83
Consensus pattern (24 bp):
TTTTTGTTCTTTATTTCTTTTCTT
Found at i:32720 original size:11 final size:11
Alignment explanation
Indices: 32685--32709 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32675 TTTTTATTTC
32685 TTTGTTCTTTT
1 TTTGTTCTTTT
32696 TTTGTTCTTTT
1 TTTGTTCTTTT
32707 TTT
1 TTT
32710 CTTTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (11 bp):
TTTGTTCTTTT
Found at i:33554 original size:22 final size:22
Alignment explanation
Indices: 33529--33572 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
33519 GAAAGAATCT
33529 AGAATTATTCG-AAAAAAATGAA
1 AGAA-TATTCGCAAAAAAATGAA
* *
33551 AGAATATTGGCTAAAAAATGAA
1 AGAATATTCGCAAAAAAATGAA
33573 TGCAAAGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.57, C:0.05, G:0.16, T:0.23
Consensus pattern (22 bp):
AGAATATTCGCAAAAAAATGAA
Found at i:36873 original size:30 final size:31
Alignment explanation
Indices: 36837--36897 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
36827 ATTTTTTATT
*
36837 AATTCTTTTTAA-TTTTTATAAAAGTATGTG
1 AATTCTTTTGAATTTTTTATAAAAGTATGTG
36867 AATTCTTTTGAATTTTTTATAAAAGTATGTG
1 AATTCTTTTGAATTTTTTATAAAAGTATGTG
36898 GATTACCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 11 0.38
31 18 0.62
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52
Consensus pattern (31 bp):
AATTCTTTTGAATTTTTTATAAAAGTATGTG
Found at i:38762 original size:18 final size:18
Alignment explanation
Indices: 38731--38774 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
38721 TTTTTAATTT
38731 TTAAAAACTAAAGAATATA
1 TTAAAAACTAAAGAA-ATA
*
38750 TTAAAAA-TTAAGAAATA
1 TTAAAAACTAAAGAAATA
38767 TGTAAAAA
1 T-TAAAAA
38775 AATAAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 12 0.52
19 7 0.30
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (18 bp):
TTAAAAACTAAAGAAATA
Found at i:41397 original size:13 final size:13
Alignment explanation
Indices: 41379--41409 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
41369 ATATAATTTT
41379 TAAAATTTTAAAA
1 TAAAATTTTAAAA
*
41392 TAAAATTTTAACA
1 TAAAATTTTAAAA
41405 TAAAA
1 TAAAA
41410 CTTGAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAAATTTTAAAA
Found at i:41855 original size:39 final size:40
Alignment explanation
Indices: 41801--41879 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
41791 ATGTCAGGGG
* * * *
41801 ACGTGTCAGCAAATCGCGTCCTCGTAAGCGCGA-TTGCTT
1 ACGTGGCAACAAATCGCGTCCACCTAAGCGCGACTTGCTT
*
41840 ACGTGGCAACAAATCGCGTCCACCTAGGCGCGACTTGCTT
1 ACGTGGCAACAAATCGCGTCCACCTAAGCGCGACTTGCTT
41880 CCATGTCAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 28 0.82
40 6 0.18
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (40 bp):
ACGTGGCAACAAATCGCGTCCACCTAAGCGCGACTTGCTT
Found at i:42082 original size:11 final size:11
Alignment explanation
Indices: 42061--42126 Score: 62
Period size: 11 Copynumber: 5.9 Consensus size: 11
42051 ACAACTCCTT
42061 TCTCGAATTTCC
1 TCTC-AATTTCC
42073 TCTCAATTTCC
1 TCTCAATTTCC
* *
42084 TCTAAATTTTC
1 TCTCAATTTCC
*
42095 TTTCAATTT-C
1 TCTCAATTTCC
*
42105 TCTCAAATTCC
1 TCTCAATTTCC
*
42116 TTCTAAATTTC
1 -TCTCAATTTC
42127 TCTTAAATCC
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.18
11 24 0.55
12 12 0.27
ACGTcount: A:0.23, C:0.27, G:0.02, T:0.48
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:42100 original size:22 final size:22
Alignment explanation
Indices: 42061--42134 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
42051 ACAACTCCTT
*
42061 TCTCGAATTTCCTCTCAATTTC
1 TCTCAAATTTCCTCTCAATTTC
* *
42083 -CTCTAAATTTTCTTTCAATTTC
1 TCTC-AAATTTCCTCTCAATTTC
*
42105 TCTCAAA-TTCCTTCTAAATTTC
1 TCTCAAATTTCC-TCTCAATTTC
*
42127 TCTTAAAT
1 TCTCAAAT
42135 CCATATTTAA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
21 6 0.15
22 32 0.78
23 3 0.07
ACGTcount: A:0.24, C:0.26, G:0.01, T:0.49
Consensus pattern (22 bp):
TCTCAAATTTCCTCTCAATTTC
Found at i:42103 original size:33 final size:34
Alignment explanation
Indices: 42066--42130 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
42056 TCCTTTCTCG
*
42066 AATTTCCTCTCAATTTCC-TCTAAATTT-TCTTTC
1 AATTT-CTCTCAAATTCCTTCTAAATTTCTCTTTC
42099 AATTTCTCTCAAATTCCTTCTAAATTTCTCTT
1 AATTTCTCTCAAATTCCTTCTAAATTTCTCTT
42131 AAATCCATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 11 0.38
33 14 0.48
34 4 0.14
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (34 bp):
AATTTCTCTCAAATTCCTTCTAAATTTCTCTTTC
Found at i:42161 original size:51 final size:50
Alignment explanation
Indices: 42097--42193 Score: 142
Period size: 51 Copynumber: 1.9 Consensus size: 50
42087 AAATTTTCTT
*
42097 TCAATTTCTCTCAAATTCCT-TCTAAATTTCTCTTAAATCCATATTTAATC
1 TCAATTTCTCTCAAATTCCTCT-TAAATTTCTCATAAATCCATATTTAATC
* *
42147 TCAATTTGCTCTCAATTTCCTCTTAAATTTCTCATAAATCCCTATTT
1 TCAATTT-CTCTCAAATTCCTCTTAAATTTCTCATAAATCCATATTT
42194 TTAAATAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 7 0.17
51 34 0.81
52 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.01, T:0.46
Consensus pattern (50 bp):
TCAATTTCTCTCAAATTCCTCTTAAATTTCTCATAAATCCATATTTAATC
Found at i:43348 original size:7 final size:7
Alignment explanation
Indices: 43336--43361 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
43326 TAGTCGATTG
43336 GTATTTA
1 GTATTTA
43343 GTATTTA
1 GTATTTA
43350 GTATTTA
1 GTATTTA
43357 GTATT
1 GTATT
43362 ATGTATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:45171 original size:20 final size:20
Alignment explanation
Indices: 45148--45239 Score: 75
Period size: 20 Copynumber: 4.5 Consensus size: 20
45138 AATAAAAATA
*
45148 AATAAAAATGATT-AAATTTT
1 AATAAAAAT-ATTAAAAATTT
45168 AATAAAAATATTAAAAATTT
1 AATAAAAATATTAAAAATTT
*
45188 ATTAAAAAT-TTGAAAAATAATT
1 AATAAAAATATT-AAAAAT--TT
* *
45210 -ATAAAAATCTTAAAAAATT
1 AATAAAAATATTAAAAATTT
45229 -ATAAAATATAT
1 AATAAAA-ATAT
45240 AGAAATATAG
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
19 13 0.21
20 32 0.52
21 12 0.20
22 4 0.07
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (20 bp):
AATAAAAATATTAAAAATTT
Found at i:45180 original size:19 final size:21
Alignment explanation
Indices: 45140--45196 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
45130 ATGGTAAAAA
*
45140 TAAAAA-TAAATAAAAATGAT
1 TAAAAATTTAATAAAAATGAT
*
45160 T-AAATTTTAATAAAAAT-AT
1 TAAAAATTTAATAAAAATGAT
*
45179 TAAAAATTTATTAAAAAT
1 TAAAAATTTAATAAAAAT
45197 TTGAAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 6 0.19
20 25 0.81
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
TAAAAATTTAATAAAAATGAT
Found at i:45228 original size:19 final size:18
Alignment explanation
Indices: 45169--45234 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 18
45159 TTAAATTTTA
*
45169 ATAAAAATATTAAAAATTT
1 ATAAAAAT-TTAAAAAATT
45188 ATTAAAAATTTGAAAAATAATT
1 A-TAAAAATTT--AAAA-AATT
45210 ATAAAAATCTTAAAAAATT
1 ATAAAAAT-TTAAAAAATT
45229 ATAAAA
1 ATAAAA
45235 TATATAGAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
19 13 0.32
20 11 0.27
21 11 0.27
22 6 0.15
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
ATAAAAATTTAAAAAATT
Found at i:45506 original size:10 final size:11
Alignment explanation
Indices: 45485--45558 Score: 52
Period size: 10 Copynumber: 7.1 Consensus size: 11
45475 TTTTGATACA
45485 TTTATAATTTT
1 TTTATAATTTT
45496 TTTAT-ATTTT
1 TTTATAATTTT
*
45506 TATTA-AA--AT
1 T-TTATAATTTT
*
45515 TTAATAA-TTT
1 TTTATAATTTT
*
45525 TTTATAA-CTT
1 TTTATAATTTT
*
45535 TTAATAAATTTT
1 TTTAT-AATTTT
45547 TTTATAATTTT
1 TTTATAATTTT
45558 T
1 T
45559 GGTCTCATGT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
8 2 0.04
9 4 0.08
10 19 0.39
11 18 0.37
12 6 0.12
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (11 bp):
TTTATAATTTT
Found at i:45528 original size:21 final size:21
Alignment explanation
Indices: 45501--45556 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
45491 ATTTTTTTAT
45501 ATTTTTATTAAAATTTAATAA
1 ATTTTTATTAAAATTTAATAA
* **
45522 TTTTTTA-TAACTTTTAATAA
1 ATTTTTATTAAAATTTAATAA
*
45542 ATTTTT-TTATAATTT
1 ATTTTTATTAAAATTT
45557 TTGGTCTCAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTTTATTAAAATTTAATAA
Found at i:45537 original size:30 final size:29
Alignment explanation
Indices: 45484--45542 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
45474 TTTTTGATAC
* *
45484 ATTTATAATTTTTTTATATTTTTATTAAA
1 ATTTATAATTTTTTTATACTTTTAATAAA
45513 ATTTAATAA-TTTTTTATAACTTTTAATAAA
1 ATTT-ATAATTTTTTTAT-ACTTTTAATAAA
45543 TTTTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (29 bp):
ATTTATAATTTTTTTATACTTTTAATAAA
Found at i:45543 original size:29 final size:28
Alignment explanation
Indices: 45475--45545 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
45465 TAAATGACCT
* * *
45475 TTTTGATACATTTATAATTTTTTTATAT
1 TTTTAATAAATTTATAATTTTTTTATAC
*
45503 TTTTATTAAAATTTAATAA-TTTTTTATAAC
1 TTTTAAT-AAATTT-ATAATTTTTTTAT-AC
45533 TTTTAATAAATTT
1 TTTTAATAAATTT
45546 TTTTATAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 5 0.14
29 19 0.54
30 11 0.31
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (28 bp):
TTTTAATAAATTTATAATTTTTTTATAC
Found at i:46230 original size:24 final size:24
Alignment explanation
Indices: 46203--46251 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
46193 AATTTGTTTC
46203 AGACCCTTTTTCTGTATTTTGGGT
1 AGACCCTTTTTCTGTATTTTGGGT
46227 AGACCCTTTTTCTGTATTTTGGGT
1 AGACCCTTTTTCTGTATTTTGGGT
46251 A
1 A
46252 AGTGAATGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.14, C:0.16, G:0.20, T:0.49
Consensus pattern (24 bp):
AGACCCTTTTTCTGTATTTTGGGT
Found at i:47042 original size:18 final size:18
Alignment explanation
Indices: 47019--47089 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
47009 CGTTTACGGT
*
47019 ACTATTCACGTATATAGC
1 ACTATTCACGTATACAGC
*
47037 ACTATTCACGTATACGGC
1 ACTATTCACGTATACAGC
* *
47055 ACTATTCACGTATACGGT
1 ACTATTCACGTATACAGC
*
47073 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
47090 TAGTTGGGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:59404 original size:42 final size:41
Alignment explanation
Indices: 59250--59405 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 41
59240 TGTGTTATCG
59250 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTTA
* * * *
59292 TGTATAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTTTG
1 TG--TAAGACCACGTCTGGGACGTTGGCATCGATA-TTGA-TTTA
*
59336 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTGATT-TA
59378 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
59406 TGTACGAGTT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
41 3 0.03
42 52 0.55
43 8 0.09
44 29 0.31
45 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTTA
Found at i:65204 original size:15 final size:17
Alignment explanation
Indices: 65184--65218 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
65174 ATTTACTTAT
65184 ATTTTT-AAA-TTTTTA
1 ATTTTTAAAATTTTTTA
65199 ATTTTTAAAATTTTTTA
1 ATTTTTAAAATTTTTTA
65216 ATT
1 ATT
65219 AAAAATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 3 0.17
17 9 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTTTTAAAATTTTTTA
Found at i:69160 original size:29 final size:26
Alignment explanation
Indices: 69101--69162 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 26
69091 GTGATATGTG
*
69101 ATAAAAAATTAAAAATTTTAATTTTA
1 ATAAAAAATAAAAAATTTTAATTTTA
69127 ATAAAAATATAAAAAATATTTAAATTTTA
1 ATAAAAA-ATAAAAAAT-TTT-AATTTTA
*
69156 TTAAAAA
1 ATAAAAA
69163 CTAGAAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.23
27 8 0.26
28 3 0.10
29 13 0.42
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAAAAATAAAAAATTTTAATTTTA
Found at i:69202 original size:20 final size:20
Alignment explanation
Indices: 69170--69207 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
69160 AAACTAGAAG
69170 AAAAAAATGTATAAGAATTGT
1 AAAAAAATGTATAA-AATTGT
69191 AAAAAAAT-TATAAAATT
1 AAAAAAATGTATAAAATT
69208 TTATACAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 5 0.29
21 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (20 bp):
AAAAAAATGTATAAAATTGT
Found at i:75059 original size:31 final size:29
Alignment explanation
Indices: 74989--75062 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
74979 GCCCCAGGTT
* *
74989 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
75018 ACGTTTTAGTCACTTATGTTATCATGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
75049 ACATTTTAGTCACT
1 ACATTTTAGTCACT
75063 AAGCCATTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:76078 original size:21 final size:21
Alignment explanation
Indices: 76052--76095 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
76042 CTTCAACGAA
76052 AACCCAGAATAAAGATTTTTT
1 AACCCAGAATAAAGATTTTTT
76073 AACCCAGAATAAAGATTTTTT
1 AACCCAGAATAAAGATTTTTT
76094 AA
1 AA
76096 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (21 bp):
AACCCAGAATAAAGATTTTTT
Found at i:94726 original size:25 final size:24
Alignment explanation
Indices: 94681--94727 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
94671 GATAAATTAT
*
94681 TTTTAAATTTAAAATTTTATTTAG
1 TTTTAAATTTAAAATTCTATTTAG
94705 TTTTAGAATTTATAAA-TCTATTT
1 TTTTA-AATTTA-AAATTCTATTT
94728 TTTTCCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 12 0.60
26 3 0.15
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (24 bp):
TTTTAAATTTAAAATTCTATTTAG
Found at i:97261 original size:21 final size:21
Alignment explanation
Indices: 97237--97278 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97227 CTTTTTGTTC
*
97237 AATTAATTATCGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
**
97258 AATTTTTTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
97279 TACTAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Found at i:98680 original size:44 final size:45
Alignment explanation
Indices: 98594--98684 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
98584 CTTGGTTCGC
* * *
98594 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
98639 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
98683 TG
1 TG
98685 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:98869 original size:18 final size:17
Alignment explanation
Indices: 98848--98882 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98838 TTATTATTAA
*
98848 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
98866 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
98883 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:98934 original size:156 final size:157
Alignment explanation
Indices: 98735--99050 Score: 589
Period size: 156 Copynumber: 2.0 Consensus size: 157
98725 TAGAATACCC
*
98735 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAACGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
98800 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
98865 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
98891 TTAGCATAAATTTGTTTTGGTAAACGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAACGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
98956 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTTTTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
99021 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
99048 TTA
1 TTA
99051 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 148 0.95
157 7 0.05
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (157 bp):
TTAGCATAAAATTGTTTTGGTAAACGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:99024 original size:16 final size:16
Alignment explanation
Indices: 98984--99038 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
98974 TTAATCATAT
*
98984 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
99000 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
99015 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
99033 -TAAAAT
1 TTAAAAT
99039 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:99031 original size:18 final size:17
Alignment explanation
Indices: 99004--99038 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
98994 TTTTTATTAA
*
99004 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
99022 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
99039 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:99137 original size:120 final size:119
Alignment explanation
Indices: 98987--99211 Score: 405
Period size: 120 Copynumber: 1.9 Consensus size: 119
98977 ATCATATTTA
* *
98987 AACATAATTTTTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
99052 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATA-TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
99107 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTCA
1 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
99172 TATTCTTATATAATTTATTCAAATCATAATATATGATACT
66 TATTCTTATATAATTTACTCAAATCATAATATATGATACT
99212 ATAATTAATA
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 29 0.29
120 72 0.71
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (119 bp):
AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:99145 original size:18 final size:17
Alignment explanation
Indices: 99124--99158 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
99114 ATATTATTAA
*
99124 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
99142 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
99159 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:99287 original size:26 final size:27
Alignment explanation
Indices: 99212--99293 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
99202 ATATGATACT
* *
99212 ATAATTAATATTAAATATATTTTAATTA
1 ATAATTATTATTAAATATAATTTAA-TA
* *
99240 A-AATATATGATTAAATACAATTTAA-A
1 ATAAT-TATTATTAAATATAATTTAATA
*
99266 ATAATTATTATTAAATATAATTTCATA
1 ATAATTATTATTAAATATAATTTAATA
99293 A
1 A
99294 AATGTTCTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (27 bp):
ATAATTATTATTAAATATAATTTAATA
Found at i:102257 original size:67 final size:69
Alignment explanation
Indices: 102174--102304 Score: 194
Period size: 67 Copynumber: 1.9 Consensus size: 69
102164 TTACTGCAAC
* * *
102174 ATATTAAAATTAGAACACACTATCAAAGAGTTGAAGTTGC-AATTACACTTTATAAAAAAAATTA
1 ATATTAAAATTAGAACACACTATCAAAGAATTGAAGATGCAAATTAAACTTTATAAAAAAAATTA
102238 AACA
66 AACA
* * *
102242 ATATT-AATTTAGAACACACTATCAAAGAATTGAAGATGCAAATTAAATTTTATAAAAATAATT
1 ATATTAAAATTAGAACACACTATCAAAGAATTGAAGATGCAAATTAAACTTTATAAAAAAAATT
102305 GAGAGACAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 31 0.55
68 25 0.45
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.31
Consensus pattern (69 bp):
ATATTAAAATTAGAACACACTATCAAAGAATTGAAGATGCAAATTAAACTTTATAAAAAAAATTA
AACA
Found at i:102773 original size:23 final size:23
Alignment explanation
Indices: 102746--102818 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
102736 TTATATTAAT
102746 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
* * * ***
102769 ATTATAT-TTC-AATTAAAAAT-
1 ATTATATAATCAAAATGATTTTA
102789 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
102812 ATTATAT
1 ATTATAT
102819 TTTAATATAC
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 7 0.20
21 7 0.20
22 7 0.20
23 14 0.40
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (23 bp):
ATTATATAATCAAAATGATTTTA
Found at i:103631 original size:21 final size:22
Alignment explanation
Indices: 103588--103636 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
103578 AAGCAGATGG
103588 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAATAAATTATAT
* * *
103610 AGCCATTGCAAA-CAATTGTAT
1 AGCCACTGCAAATAAATTATAT
103631 AGCCAC
1 AGCCAC
103637 AAGCAATGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.24
Consensus pattern (22 bp):
AGCCACTGCAAATAAATTATAT
Found at i:105862 original size:9 final size:9
Alignment explanation
Indices: 105848--105917 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
105838 TTTTGGTTAA
105848 AATTACCCG
1 AATTACCCG
105857 AATTACCCG
1 AATTACCCG
105866 AATTACCCG
1 AATTACCCG
105875 AATTACCCG
1 AATTACCCG
*
105884 AATTAACCG
1 AATTACCCG
*
105893 AATTAACCG
1 AATTACCCG
*
105902 AATTAACCG
1 AATTACCCG
105911 AATTACC
1 AATTACC
105918 GAAAAATACC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:109965 original size:57 final size:57
Alignment explanation
Indices: 109851--109965 Score: 130
Period size: 57 Copynumber: 2.0 Consensus size: 57
109841 TTATGGGAAA
* * **
109851 TAGATGGCTGGCACCACTTTTTTTCTATTAAAAAATAATTTTTGGAGTTTTGGACAC
1 TAGATGGCTGGCACCACTTTTTTTCTATCAAAAAAAAATTTTTGGAGTGCTGGACAC
109908 TAGATGGCTGGCACCA-TGTATTTTT-T-TCCAAAAAAAAATTTTTGG-GTGCTGGCACAC
1 TAGATGGCTGGCACCACT-T-TTTTTCTAT-CAAAAAAAAATTTTTGGAGTGCTGG-ACAC
109965 T
1 T
109966 TATGGCCGAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
56 7 0.14
57 38 0.76
58 5 0.10
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (57 bp):
TAGATGGCTGGCACCACTTTTTTTCTATCAAAAAAAAATTTTTGGAGTGCTGGACAC
Found at i:110267 original size:23 final size:25
Alignment explanation
Indices: 110215--110274 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
110205 AAATTTAAAA
*
110215 ATTAATTTA-AAATATATTGAACTAC
1 ATTATTTTATAAATATATT-AACTAC
110240 A-TATTTTATAAATATATT-ACT-C
1 ATTATTTTATAAATATATTAACTAC
*
110262 ATTATTTTTTAAA
1 ATTATTTTATAAA
110275 ATAAAAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 13 0.42
24 6 0.19
25 10 0.32
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTATTTTATAAATATATTAACTAC
Found at i:114112 original size:20 final size:20
Alignment explanation
Indices: 114073--114113 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
114063 AGATTTGTCT
* * *
114073 CATCACAGGCATTCTCATCC
1 CATCACAGACATCCTAATCC
114093 CATCACAGACATCCTAATCC
1 CATCACAGACATCCTAATCC
114113 C
1 C
114114 CACACGTTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.41, G:0.07, T:0.22
Consensus pattern (20 bp):
CATCACAGACATCCTAATCC
Found at i:114953 original size:32 final size:31
Alignment explanation
Indices: 114908--115003 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
114898 CTTAGATAAT
114908 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
114939 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
114971 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
115002 TT
1 TT
115004 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:120544 original size:32 final size:31
Alignment explanation
Indices: 120499--120593 Score: 165
Period size: 32 Copynumber: 3.1 Consensus size: 31
120489 CTTAGATAAT
120499 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
120530 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
120562 TTGAAAGA-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
120592 TT
1 TT
120594 GTAATTTGCC
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
30 24 0.39
31 9 0.15
32 29 0.47
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:122673 original size:20 final size:20
Alignment explanation
Indices: 122636--122674 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
122626 TGACACATCA
** *
122636 AGCCCAAATTAAATCCAAAC
1 AGCCCAAAACAAACCCAAAC
122656 AGCCCAAAACAAACCCAAA
1 AGCCCAAAACAAACCCAAA
122675 AACAACACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.54, C:0.33, G:0.05, T:0.08
Consensus pattern (20 bp):
AGCCCAAAACAAACCCAAAC
Found at i:123101 original size:18 final size:18
Alignment explanation
Indices: 123068--123112 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
123058 GTTACTCTTC
123068 TTTTTATTTTTGTTTC-G
1 TTTTTATTTTTGTTTCAG
* *
123085 TTTTTATTTTTATTTTCAT
1 TTTTTATTTTT-GTTTCAG
123104 TTTTTATTT
1 TTTTTATTT
123113 CGAAGTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 11 0.46
18 4 0.17
19 9 0.38
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.80
Consensus pattern (18 bp):
TTTTTATTTTTGTTTCAG
Found at i:123867 original size:17 final size:17
Alignment explanation
Indices: 123838--123870 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
123828 TTATATTTTG
123838 TTATTAGTTTTGTATTA
1 TTATTAGTTTTGTATTA
123855 TTATT-GTTATTGTATT
1 TTATTAGTT-TTGTATT
123871 TCTATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (17 bp):
TTATTAGTTTTGTATTA
Found at i:123923 original size:3 final size:3
Alignment explanation
Indices: 123915--123949 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
123905 ATTAATCTTG
123915 TAT TAT TAT TAT TGAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT T
123950 TACTCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:124037 original size:31 final size:33
Alignment explanation
Indices: 123985--124063 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 33
123975 AAATTTTGTT
* *
123985 ATATACATATATATATA--TACAT-TTCT-ATA
1 ATATATATATATATACACGTACATATTCTCATA
* *
124014 ATATATATATTTATACACGTACATATTTTCATA
1 ATATATATATATATACACGTACATATTCTCATA
*
124047 ATTTATATATATATACA
1 ATATATATATATATACA
124064 TACATACTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 14 0.35
31 5 0.12
32 3 0.08
33 18 0.45
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.46
Consensus pattern (33 bp):
ATATATATATATATACACGTACATATTCTCATA
Found at i:141558 original size:25 final size:24
Alignment explanation
Indices: 141521--141567 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
141511 TTAGAATTAA
* **
141521 AAAAATAGTTAAATTTTGAAAACT
1 AAAAATAATTAAAACTTGAAAACT
141545 AAAAATAATATAAAACTTGAAAA
1 AAAAATAAT-TAAAACTTGAAAA
141568 TACTATTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (24 bp):
AAAAATAATTAAAACTTGAAAACT
Found at i:141672 original size:27 final size:28
Alignment explanation
Indices: 141642--141698 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 28
141632 TTAGATTTTT
141642 ATTTGATAAATTATTTTTA-AATTTA-AA
1 ATTT-ATAAATTATTTTTAGAATTTATAA
* *
141669 ATTTTTAATTTATTTTTAGAATTTATAA
1 ATTTATAAATTATTTTTAGAATTTATAA
141697 AT
1 AT
141699 CTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 12 0.46
27 10 0.38
28 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (28 bp):
ATTTATAAATTATTTTTAGAATTTATAA
Found at i:141686 original size:20 final size:21
Alignment explanation
Indices: 141663--141706 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
141653 TATTTTTAAA
* *
141663 TTTAAAATTT-TTAATTTATT
1 TTTAAAATTTATAAATCTATT
*
141683 TTTAGAATTTATAAATCTATT
1 TTTAAAATTTATAAATCTATT
141704 TTT
1 TTT
141707 TTTCTTTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTAAAATTTATAAATCTATT
Found at i:142248 original size:22 final size:23
Alignment explanation
Indices: 142219--142293 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 23
142209 TTTAAATTGA
142219 TTAT-ATAATTTATTAAAAT-AT
1 TTATAATAATTTATTAAAATAAT
**
142240 TTATAATAAAATATTGAAAGATACAT
1 TTATAATAATTTATT-AAA-ATA-AT
* *
142266 TT-TAATATTTTATTAAATTAAT
1 TTATAATAATTTATTAAAATAAT
142288 TTATAA
1 TTATAA
142294 ATTCATATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
21 4 0.10
22 12 0.29
23 8 0.19
24 5 0.12
25 9 0.21
26 4 0.10
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (23 bp):
TTATAATAATTTATTAAAATAAT
Found at i:142497 original size:21 final size:21
Alignment explanation
Indices: 142446--142500 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
142436 ACCATTGTTT
* *
142446 CTAATCTCACTGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
* * *
142467 CCATTGTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
142488 CTAATCTCACCGC
1 CTAATCTCACCGC
142501 CACTGCTATT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.11, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:143502 original size:63 final size:63
Alignment explanation
Indices: 143425--143551 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
143415 ATATCTTCTC
* *
143425 TTTGTTGTATTTCTGTATCAACAAAGTTAGTTTTGGGTTTTATTTTTATTAAATTTGAATTAT
1 TTTGTTGTATTTCTGTATCAACAAAGTAAATTTTGGGTTTTATTTTTATTAAATTTGAATTAT
143488 TTTGTTGTATTTCTGTATCAACAAAGTAAATTTTGGGTTTTATTTTTATTAAATTTGAATTAT
1 TTTGTTGTATTTCTGTATCAACAAAGTAAATTTTGGGTTTTATTTTTATTAAATTTGAATTAT
143551 T
1 T
143552 GTAAGTTTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (63 bp):
TTTGTTGTATTTCTGTATCAACAAAGTAAATTTTGGGTTTTATTTTTATTAAATTTGAATTAT
Found at i:151311 original size:132 final size:132
Alignment explanation
Indices: 150770--151298 Score: 808
Period size: 132 Copynumber: 4.0 Consensus size: 132
150760 TCACACCATG
* * *
150770 ACCAGTCCTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGC
1 ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
* * * * * *
150835 AGTAGTGGCGCAGATCGAAAACAGCGAATCTTATCTTCCCAATGTAGTAGGGAAGTAGATTTAAG
66 AGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAG
150900 CC
131 CC
150902 ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
1 ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
* * *
150967 AGTAGTGAAGCAGATCAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAAATTTAAG
66 AGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAG
151032 CC
131 CC
* * * * * *
151034 ACCATTCCTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATCGCAGATCTTGTCTCCATGAGT
1 ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
*
151099 AGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAG
66 AGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAG
151164 CC
131 CC
* * *
151166 ACCAGTCCTATCTCCTTGAGCCGCAATGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
1 ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
* * * *
151231 AGTAGTGGAGCAGAT-TATAGACGGTGAATCTTATCTTCCCAAAGTAGTAAGGAAGCAGATTGAA
66 AGTAGTGGAGCAGATCGA-AGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
151295 GCC
130 GCC
151298 A
1 A
151299 TTAGTCTTAT
Statistics
Matches: 360, Mismatches: 36, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 359 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (132 bp):
ACCAGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTGTCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAG
CC
Found at i:152022 original size:13 final size:14
Alignment explanation
Indices: 152004--152037 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
151994 TTACAAAATA
*
152004 AGCCCAAC-ACCCT
1 AGCCCAACAACCCG
152017 AGCCCAACAACCCG
1 AGCCCAACAACCCG
152031 AGCCCAA
1 AGCCCAA
152038 TTACAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.35, C:0.50, G:0.12, T:0.03
Consensus pattern (14 bp):
AGCCCAACAACCCG
Found at i:152029 original size:44 final size:44
Alignment explanation
Indices: 151979--152070 Score: 175
Period size: 44 Copynumber: 2.1 Consensus size: 44
151969 ACTACCCATT
151979 ACAACCCGAGCCCAATTACAAAATAAGCCCAACACCCTAGCCCA
1 ACAACCCGAGCCCAATTACAAAATAAGCCCAACACCCTAGCCCA
*
152023 ACAACCCGAGCCCAATTACAAAATAAGCCCAACACCCTTGCCCA
1 ACAACCCGAGCCCAATTACAAAATAAGCCCAACACCCTAGCCCA
152067 ACAA
1 ACAA
152071 ACCAAGTCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.41, C:0.40, G:0.09, T:0.10
Consensus pattern (44 bp):
ACAACCCGAGCCCAATTACAAAATAAGCCCAACACCCTAGCCCA
Found at i:152584 original size:6 final size:6
Alignment explanation
Indices: 152575--152609 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
152565 TTTTGTTTTG
152575 TTTTCT TTTTCT TTTTCT TTTTCT TGTTTGCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT T-TTT-CT TTT
152610 GAGATCCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 19 0.70
7 5 0.19
8 3 0.11
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:153377 original size:13 final size:13
Alignment explanation
Indices: 153359--153384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
153349 GACTTTATCG
153359 TTATTTAAAAATC
1 TTATTTAAAAATC
153372 TTATTTAAAAATC
1 TTATTTAAAAATC
153385 AATTTATACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TTATTTAAAAATC
Found at i:157799 original size:20 final size:21
Alignment explanation
Indices: 157774--157813 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
157764 AAATCATTGA
157774 TAAATCCAA-CCAACTTTTCT
1 TAAATCCAAGCCAACTTTTCT
*
157794 TAAATCCAAGCCATCTTTTC
1 TAAATCCAAGCCAACTTTTC
157814 ATAGGCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.35
Consensus pattern (21 bp):
TAAATCCAAGCCAACTTTTCT
Found at i:159413 original size:17 final size:17
Alignment explanation
Indices: 159391--159426 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
159381 CTTCATTCTA
159391 TTCACTGATAGTGATCG
1 TTCACTGATAGTGATCG
*
159408 TTCACTGATATTGATCG
1 TTCACTGATAGTGATCG
159425 TT
1 TT
159427 GATACTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (17 bp):
TTCACTGATAGTGATCG
Found at i:159793 original size:107 final size:107
Alignment explanation
Indices: 159601--159806 Score: 333
Period size: 107 Copynumber: 1.9 Consensus size: 107
159591 CAAAAATTTA
* *
159601 ATTCAATTTTTTTCAATTGGCAGGTCTAAGTTAATTAGAATTTTAAAAGTTTTGAGTCAGATTTT
1 ATTCAATTTTTTTCAATTGACAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTCAGATTTT
*
159666 GTTTAGTCAAAGAATTTTATTCAATC-AAATTTTAAATTTTC
66 GTTTAGTCAAAGAATTTTATTCAACCAAAATTTTAAATTTTC
* *
159707 ATTCAATTTTTTTTCAATTGATAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTTAGATTT
1 ATTCAA-TTTTTTTCAATTGACAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTCAGATTT
* *
159772 TGTTTAGTGATAGAATTTTATTCAACCAAAATTTT
65 TGTTTAGTCAAAGAATTTTATTCAACCAAAATTTT
159807 TTAAGTCCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
106 6 0.07
107 78 0.86
108 7 0.08
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (107 bp):
ATTCAATTTTTTTCAATTGACAGGTCTAAGTTAATTAGAATTATAAAAGTTTTGAGTCAGATTTT
GTTTAGTCAAAGAATTTTATTCAACCAAAATTTTAAATTTTC
Found at i:159853 original size:20 final size:19
Alignment explanation
Indices: 159824--159868 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
159814 CAAGCCTATA
*
159824 TTAAAAAATATATTTTAAAT
1 TTAAATAATAT-TTTTAAAT
**
159844 TTAAATAATATTTTTTTAT
1 TTAAATAATATTTTTAAAT
159863 TTAAAT
1 TTAAAT
159869 TGATGTTGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAATAATATTTTTAAAT
Found at i:162517 original size:25 final size:25
Alignment explanation
Indices: 162478--162577 Score: 119
Period size: 25 Copynumber: 4.0 Consensus size: 25
162468 CCTCTTTGTA
* * *
162478 GCTCTGTCCTATTCTGTTATATTCT
1 GCTCTGTCCTGTTCTGATATGTTCT
* *
162503 GGTTTGTCCTGTTCTGATATGTTCT
1 GCTCTGTCCTGTTCTGATATGTTCT
* *
162528 GCCCTGTCCTGTTCTAATATGTTCT
1 GCTCTGTCCTGTTCTGATATGTTCT
* *
162553 GCTCTGTCCTGTTCTGCTCTGTTCT
1 GCTCTGTCCTGTTCTGATATGTTCT
162578 ATTTGGTTCT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.08, C:0.25, G:0.18, T:0.49
Consensus pattern (25 bp):
GCTCTGTCCTGTTCTGATATGTTCT
Found at i:163019 original size:7 final size:7
Alignment explanation
Indices: 163009--163034 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
162999 ATATTAATAA
163009 TTAAAAT
1 TTAAAAT
163016 TTAAAAT
1 TTAAAAT
163023 TTAAAAT
1 TTAAAAT
163030 TTAAA
1 TTAAA
163035 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAAAT
Found at i:164111 original size:21 final size:21
Alignment explanation
Indices: 164087--164200 Score: 54
Period size: 21 Copynumber: 5.4 Consensus size: 21
164077 TTAGGGTTTG
164087 GGTTTTGGGTTTTGGGTTCAA
1 GGTTTTGGGTTTTGGGTTCAA
* * *
164108 GGTTTAAGGG-TTTGAGTTTAA
1 GGTTT-TGGGTTTTGGGTTCAA
* ** *
164129 AGTTTAAGGTTTTGGGGTT-AT
1 GGTTTTGGGTTTT-GGGTTCAA
* * ** *
164150 GTGTTATGAGTTCGGGGTTCAC
1 G-GTTTTGGGTTTTGGGTTCAA
*
164172 GG-TTTGGGTTTTGGATTCAA
1 GGTTTTGGGTTTTGGGTTCAA
*
164192 GGGTTTGGG
1 GGTTTTGGG
164201 GTTATGAGCT
Statistics
Matches: 66, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
20 17 0.26
21 34 0.52
22 15 0.23
ACGTcount: A:0.15, C:0.04, G:0.38, T:0.43
Consensus pattern (21 bp):
GGTTTTGGGTTTTGGGTTCAA
Found at i:164937 original size:16 final size:16
Alignment explanation
Indices: 164897--164930 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
164887 GGGTTTTTAA
164897 TTAAATTT-GAATTATT
1 TTAAATTTAG-ATTATT
164913 TTAAATTTAGATTATT
1 TTAAATTTAGATTATT
164929 TT
1 TT
164931 CGATTTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 16 0.94
17 1 0.06
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
TTAAATTTAGATTATT
Found at i:169492 original size:21 final size:21
Alignment explanation
Indices: 169466--169528 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
169456 GATTCTCCAA
169466 GTGTTTACGAAACATAGTCA-
1 GTGTTTACGAAACATAGTCAG
169486 GTGGTTTACGAAACATAGTCAG
1 GT-GTTTACGAAACATAGTCAG
* *
169508 GTGTTTACGAATCATACTCAG
1 GTGTTTACGAAACATAGTCAG
169529 AACAAAGTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
20 2 0.05
21 35 0.90
22 2 0.05
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (21 bp):
GTGTTTACGAAACATAGTCAG
Found at i:175181 original size:27 final size:28
Alignment explanation
Indices: 175140--175201 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
175130 GTGACATGTG
*
175140 ATAAAAATATTAAAA-ATTTAAATTTTA
1 ATAAAAATATAAAAATATTTAAATTTTA
175167 ATAAAAATATAAAAATATTTAAATTTTA
1 ATAAAAATATAAAAATATTTAAATTTTA
*
175195 TTAAAAA
1 ATAAAAA
175202 ACTAGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.44
28 18 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
ATAAAAATATAAAAATATTTAAATTTTA
Found at i:175232 original size:19 final size:18
Alignment explanation
Indices: 175208--175253 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
175198 AAAAACTAGA
175208 AAAAAAATATAAGAATTGT
1 AAAAAAATATAA-AATTGT
*
175227 AAAAAAATTATAAAATTTT
1 AAAAAAA-TATAAAATTGT
*
175246 ATAAAAAT
1 AAAAAAAT
175254 CGTAAAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 18 0.75
20 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAAAAATATAAAATTGT
Found at i:175252 original size:20 final size:20
Alignment explanation
Indices: 175207--175243 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
175197 AAAAAACTAG
175207 AAAAAAAATATAAGAATTGT
1 AAAAAAAATATAAGAATTGT
*
175227 AAAAAAATTATAA-AATT
1 AAAAAAAATATAAGAATT
175244 TTATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAAAAAATATAAGAATTGT
Found at i:175307 original size:38 final size:38
Alignment explanation
Indices: 175226--175311 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
175216 ATAAGAATTG
* *
175226 TAAAAAAATTATAAAATTTTATAAAAATCGTAAAAGAA
1 TAAAAAAATTATAAAATTCTATAAAAATCATAAAAGAA
* * * *
175264 GAAAAAAATTATAAAATTCTAT-ACAGTCAT-AAAGAT
1 TAAAAAAATTATAAAATTCTATAAAAATCATAAAAGAA
*
175300 TATAAAAATTAT
1 TAAAAAAATTAT
175312 CGTAACAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
36 15 0.38
37 5 0.12
38 20 0.50
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (38 bp):
TAAAAAAATTATAAAATTCTATAAAAATCATAAAAGAA
Found at i:179778 original size:23 final size:24
Alignment explanation
Indices: 179726--179783 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
179716 ATGATAAATG
*
179726 AATAATTAAATTCTTAAAAATATA
1 AATAATAAAATTCTTAAAAATATA
**
179750 AA-AATAAAATTC-TAAATTTATA
1 AATAATAAAATTCTTAAAAATATA
179772 AATAATACAAAT
1 AATAATA-AAAT
179784 ACGAATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 10 0.34
23 13 0.45
24 6 0.21
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.34
Consensus pattern (24 bp):
AATAATAAAATTCTTAAAAATATA
Found at i:180031 original size:16 final size:17
Alignment explanation
Indices: 180012--180046 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
180002 TTTAAATAAA
*
180012 TTTATATTTTTAAT-TT
1 TTTATATTATTAATATT
180028 TTTATATTATTAATATT
1 TTTATATTATTAATATT
180045 TT
1 TT
180047 CGTCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATATTATTAATATT
Found at i:185388 original size:21 final size:21
Alignment explanation
Indices: 185362--185402 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
185352 ATCTGCTCAA
* *
185362 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
185383 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
185403 TTGCTCGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:191642 original size:23 final size:25
Alignment explanation
Indices: 191590--191649 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
191580 AAATTTAAAA
*
191590 ATTAATTTA-AAATATATTGAACTAC
1 ATTATTTTATAAATATATT-AACTAC
191615 A-TATTTTATAAATATATT-ACT-C
1 ATTATTTTATAAATATATTAACTAC
*
191637 ATTATTTTTTAAA
1 ATTATTTTATAAA
191650 ATAAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 13 0.42
24 6 0.19
25 10 0.32
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTATTTTATAAATATATTAACTAC
Found at i:191898 original size:19 final size:18
Alignment explanation
Indices: 191874--191912 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
191864 AAATTCAGTA
*
191874 TTAAAATTAATAAATATTT
1 TTAAAAATAA-AAATATTT
*
191893 TTAAAAATAAATATATTT
1 TTAAAAATAAAAATATTT
191911 TT
1 TT
191913 TTAGGCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAAATAAAAATATTT
Found at i:191905 original size:20 final size:20
Alignment explanation
Indices: 191876--191915 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
191866 ATTCAGTATT
*
191876 AAAATTAATAAATATTTTTA
1 AAAATAAATAAATATTTTTA
* *
191896 AAAATAAATATATTTTTTTA
1 AAAATAAATAAATATTTTTA
191916 GGCTTAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAATAAATAAATATTTTTA
Found at i:193662 original size:14 final size:12
Alignment explanation
Indices: 193623--193666 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
193613 TTTGAATTTG
193623 ATTAAAAAATGGA
1 ATTAAAAAAT-GA
*
193636 TTTAAAAAATGA
1 ATTAAAAAATGA
193648 ATTAAATAAAGTGA
1 ATTAAA-AAA-TGA
193662 ATTAA
1 ATTAA
193667 TTTATGAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 7 0.26
13 12 0.44
14 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (12 bp):
ATTAAAAAATGA
Found at i:193950 original size:21 final size:20
Alignment explanation
Indices: 193924--193987 Score: 83
Period size: 21 Copynumber: 3.1 Consensus size: 20
193914 GGCTTTGCCG
193924 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCAC-TTATGTGTCGT
**
193945 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCA-CTTATGTGTCGT
*
193966 TTCAGGCACTTATGTGTCGT
1 ATCAGGCACTTATGTGTCGT
193986 AT
1 AT
193988 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 11 0.31
21 24 0.67
22 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (20 bp):
ATCAGGCACTTATGTGTCGT
Found at i:196995 original size:21 final size:21
Alignment explanation
Indices: 196971--197012 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
196961 CTTTTTGTTC
*
196971 AATTAATTATCGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
**
196992 AATTTCTTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
197013 TACTAACTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Done.