Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 101 of 320
Found at i:32398156 original size:55 final size:55
Alignment explanation
Indices: 32398019--32398169 Score: 180
Period size: 55 Copynumber: 2.8 Consensus size: 55
32398009 ATTGTACAGC
* * * *
32398019 ACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGA-AATGAATATGATGC
1 ACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTATGAATATGATGA
* * * * *
32398073 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATG-TAGA
1 ACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTATGAATATGAT-GA
* *
32398128 ACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 ACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT
32398170 TGATTATATA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
54 36 0.44
55 45 0.56
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (55 bp):
ACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTATGAATATGATGA
Found at i:32398175 original size:27 final size:27
Alignment explanation
Indices: 32398017--32398172 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
32398007 AAATTGTACA
*
32398017 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32398044 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
32398071 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
32398098 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
32398126 GAACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32398153 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32398173 TTATATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32398183 original size:27 final size:27
Alignment explanation
Indices: 32398016--32398193 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
32398006 TAAATTGTAC
32398016 AGCACTAAGTGTGCG-ATTCGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* * *
32398043 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
32398069 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
32398097 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAAT-TGACTATGT
* * * *
32398125 AGAACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
32398152 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
32398179 AGCACTGAGGGTGCG
1 AGCACTAAGTGTGCG
32398194 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:32400592 original size:48 final size:47
Alignment explanation
Indices: 32400521--32400804 Score: 214
Period size: 48 Copynumber: 5.9 Consensus size: 47
32400511 GACATTTGGG
* * * *
32400521 TGATATGTGTGCCAGTGTAAGACCAAGTCAGGGAAATGGCATCGACCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGA-CA
* * *
32400569 TGATATGAGGGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGATGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAA-ATGGCATCGA-CA
* * * *
32400617 TGTTGTGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGACA
* * * * * *
32400664 TTGATACGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGACA
* * * * * * *
32400712 TTGAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGTATC-AGCC
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGA-CA
* * * * *
32400760 TCAACATGTGAACCAGTGTAAGACCATGT-TTGGAACATGGCATCG
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGAA-ATGGCATCG
32400805 GCAACTCACC
Statistics
Matches: 192, Mismatches: 37, Indels: 13
0.79 0.15 0.05
Matches are distributed among these distances:
47 10 0.05
48 178 0.93
49 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGAAATGGCATCGACA
Found at i:32400702 original size:96 final size:96
Alignment explanation
Indices: 32400534--32400807 Score: 267
Period size: 96 Copynumber: 2.9 Consensus size: 96
32400524 TATGTGTGCC
* * * * *
32400534 AGTGTAAGACCAAGTCAGGGAAATGGCATCGACCATGATATGAGGGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGAAATGGCATCGACCATGATACGAGCGCCAGTGTAAGACCATGTCT
**
32400599 GGAACATGGCATC-G-A-TGATGTTGTGAGAGCT
66 GGAACATGGCATCGGCATTGA-G--ACGAGAGCT
* * *
32400630 AGTGTAAGACCATGTCTGGGATATGGCATCGA-CATTGATACGTGCGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGAAATGGCATCGACCA-TGATACGAGCGCCAGTGTAAGACCATGTC
*
32400694 TGGGACATGGCATCGGCATTGAGACGAGAGCT
65 TGGAACATGGCATCGGCATTGAGACGAGAGCT
* * * * *
32400726 AGTGTAAGACCATGTCTAGGACATGGTATC-AGCC-TCA-AC-ATGTGAACCAGTGTAAGACCAT
1 AGTGTAAGACCATGTCTGGGAAATGGCATCGA-CCATGATACGA-GCG--CCAGTGTAAGACCAT
*
32400787 GTTTGGAACATGGCATCGGCA
62 GTCTGGAACATGGCATCGGCA
32400808 ACTCACCCTC
Statistics
Matches: 149, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
94 4 0.03
95 5 0.03
96 133 0.89
97 2 0.01
98 2 0.01
99 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGAAATGGCATCGACCATGATACGAGCGCCAGTGTAAGACCATGTCT
GGAACATGGCATCGGCATTGAGACGAGAGCT
Found at i:32404084 original size:42 final size:43
Alignment explanation
Indices: 32404012--32404137 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 43
32404002 ACATAGGATC
* * *
32404012 CGATATGTGTTTTCGTGTATGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
** *
32404055 C-ATATTTGATTTCGTGTAAGACCTTGTCTGGGATAG-TGGCAT
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGGA-CGTTGGCAT
* * *
32404097 CGATATTTGATTACATGTAAGACCACGTCTGGGACTTTGGC
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGC
32404138 TTTGTATGAG
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:32404116 original size:43 final size:42
Alignment explanation
Indices: 32404027--32404130 Score: 129
Period size: 43 Copynumber: 2.5 Consensus size: 42
32404017 TGTGTTTTCG
* * * *
32404027 TGTATGACCACGTCTGGGA-CGTTGGCATCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGATAG-TGGCATCATATTTGATTACA
**
32404069 TGTAAGACCTTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGATAGTGGCATC-ATATTTGATTACA
32404112 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
32404131 CTTTGGCTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
42 23 0.44
43 29 0.56
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATAGTGGCATCATATTTGATTACA
Found at i:32411761 original size:43 final size:43
Alignment explanation
Indices: 32411636--32411797 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 43
32411626 CCATATGTGT
* ** *
32411636 TTTCGTGTAAGACTGCGTCTGGGACGTTGGCATCAACT-TATGA
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCATCAA-TATTTGA
* * *
32411679 TTTACGTATAAGACCACGTCTGGGATGTTGGCATC-ATATTTGA
1 TTT-CATGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGA
*
32411722 TTTCATGTAAGACC-CTGTCTGGGACAG-TGGCATCAATATTTAA
1 TTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATCAATATTTGA
*
32411765 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCAT
32411798 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.25
43 47 0.46
44 28 0.27
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TTTCATGTAAGACCACGTCTGGGACGTTGGCATCAATATTTGA
Found at i:32415567 original size:30 final size:30
Alignment explanation
Indices: 32415533--32415592 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32415523 ATGCCTTCGG
*
32415533 GACTTAACCCGGTTATAATAACCCGCACGA
1 GACTTAACCCAGTTATAATAACCCGCACGA
32415563 GACTTAACCCAGTTATAATAACCCGCACGA
1 GACTTAACCCAGTTATAATAACCCGCACGA
32415593 ATGCCTTCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (30 bp):
GACTTAACCCAGTTATAATAACCCGCACGA
Found at i:32421633 original size:48 final size:47
Alignment explanation
Indices: 32421567--32421844 Score: 184
Period size: 48 Copynumber: 5.8 Consensus size: 47
32421557 TCGACCACGA
* * * * * *
32421567 TATGGGAGTCAGTATAAGACCATTTTTGGAACATGGCATTGGCGATGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGC-ATGT
* * * * *
32421615 TGTGAGAGCCAGTGTAAGACCATGTCAGGGACATGACATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA-TGT
* * * * **
32421663 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGTCACAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATGT
* * * *
32421710 TATGAGAGCCAATGTAAGACAATGTTTGGGACATGGCA-T--CAATAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGC-ATGT
* * * * *
32421755 TAAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 T---ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-GT
* * * * * *
32421806 CATGTGAGCTAGTGTAAGTCCATGTTTGGAACATGGCAT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
32421845 CAGCAACTCA
Statistics
Matches: 177, Mismatches: 44, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
44 1 0.01
45 4 0.02
46 1 0.01
47 33 0.19
48 136 0.77
50 1 0.01
51 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATGT
Found at i:32427250 original size:17 final size:17
Alignment explanation
Indices: 32427215--32427250 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32427205 GGTTTTGTGG
*
32427215 TTCATTAATTAGTTATA
1 TTCATTAATTAGATATA
*
32427232 TTCATTAATTAGATGTA
1 TTCATTAATTAGATATA
32427249 TT
1 TT
32427251 AATTCGTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (17 bp):
TTCATTAATTAGATATA
Found at i:32434554 original size:27 final size:27
Alignment explanation
Indices: 32434515--32434692 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
32434505 ACATTGAGCC
* * * *
32434515 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
32434542 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
32434569 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
32434597 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32434624 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
32434651 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32434678 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
32434693 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32434654 original size:82 final size:81
Alignment explanation
Indices: 32434536--32434691 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
32434526 TGCTATATAA
* * * **
32434536 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
32434601 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32434618 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
32434682 CCCTTAGTGC
65 CACTTAGTGC
32434692 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32453489 original size:27 final size:27
Alignment explanation
Indices: 32453450--32453627 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
32453440 ACATTGAGCC
* * * *
32453450 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
32453477 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
32453504 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
32453532 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32453559 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
32453586 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32453613 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
32453628 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32453589 original size:82 final size:81
Alignment explanation
Indices: 32453471--32453626 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
32453461 TGCTATATAA
* * * **
32453471 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
32453536 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32453553 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
32453617 CCCTTAGTGC
65 CACTTAGTGC
32453627 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32458656 original size:20 final size:20
Alignment explanation
Indices: 32458631--32458702 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 20
32458621 TAACTAGGCA
32458631 TCCGAGCTCATTGAGTTGAG
1 TCCGAGCTCATTGAGTTGAG
*
32458651 TCCGAGTTCACTT-ATGGATGTGAACG
1 TCCGAGCTCA-TTGA--G-T-TG-A-G
*
32458677 CCCGAGCTCATTGAGTTGAG
1 TCCGAGCTCATTGAGTTGAG
32458697 TCCGAG
1 TCCGAG
32458703 TTCGCTTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 16
0.67 0.07 0.27
Matches are distributed among these distances:
20 16 0.40
21 3 0.08
22 3 0.08
23 2 0.05
24 3 0.08
25 3 0.08
26 10 0.25
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (20 bp):
TCCGAGCTCATTGAGTTGAG
Found at i:32458696 original size:46 final size:46
Alignment explanation
Indices: 32458550--32458713 Score: 167
Period size: 46 Copynumber: 3.5 Consensus size: 46
32458540 TGAACTCGTC
* * * * * *
32458550 GAGTTGAGTCCCAGTTCACTTATGGATGCGAATGTCCGAACTCGTT
1 GAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATT
*
32458596 GAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGGCATCCGAGCTCATT
1 GAGTTGAGTCCGAGTTCACTTATG-GATGTGAAC---GC--CCGAGCTCATT
32458643 GAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATT
1 GAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATT
*
32458689 GAGTTGAGTCCGAGTTCGCTTATGG
1 GAGTTGAGTCCGAGTTCACTTATGG
32458714 GCGGGTTACA
Statistics
Matches: 98, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 1 0.01
46 50 0.51
47 25 0.26
48 2 0.02
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATT
Found at i:32471091 original size:21 final size:20
Alignment explanation
Indices: 32471062--32471107 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
32471052 CGAAATACAA
32471062 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
32471083 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
32471103 T-AACC
1 TCAACC
32471108 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:32471961 original size:10 final size:10
Alignment explanation
Indices: 32471931--32471983 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
32471921 CAATTCTGTC
* *
32471931 AAAAATAATC
1 AAAATTAATT
*
32471941 AAAACTAATT
1 AAAATTAATT
*
32471951 AAAATTTATTAT
1 AAAA-TTAAT-T
32471963 AAAATTAATT
1 AAAATTAATT
32471973 AAAATTAATT
1 AAAATTAATT
32471983 A
1 A
32471984 CGTTAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 24 0.67
11 7 0.19
12 5 0.14
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTAATT
Found at i:32471971 original size:22 final size:22
Alignment explanation
Indices: 32471941--32471983 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32471931 AAAAATAATC
*
32471941 AAAACTAATTAAAATTTATTAT
1 AAAACTAATTAAAATTAATTAT
*
32471963 AAAATTAATTAAAATTAATTA
1 AAAACTAATTAAAATTAATTA
32471984 CGTTAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAACTAATTAAAATTAATTAT
Found at i:32477697 original size:47 final size:47
Alignment explanation
Indices: 32477626--32478042 Score: 582
Period size: 47 Copynumber: 8.6 Consensus size: 47
32477616 CCCTTCGGGA
* * * * * * *
32477626 CTTATCACATTTATAGACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32477673 CCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32477720 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32477767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32477814 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG---------C--C-ATTAGGC
32477873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32477920 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32477969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32478016 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32478043 TATTCAAATA
Statistics
Matches: 336, Mismatches: 20, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
47 242 0.72
48 1 0.00
49 45 0.13
50 1 0.00
56 1 0.00
58 1 0.00
59 45 0.13
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32477870 original size:59 final size:59
Alignment explanation
Indices: 32477794--32478010 Score: 235
Period size: 59 Copynumber: 4.1 Consensus size: 59
32477784 CTTTCACATT
32477794 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
32477853 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * *
32477912 CAT----TAGGCC-TTA----TCA-CATATATATACACTTTCACATTCAT--CA-----
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
32477954 CAT----T-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
32478008 CAT
1 CAT
32478011 TAGGTCTTAT
Statistics
Matches: 137, Mismatches: 8, Indels: 31
0.78 0.05 0.18
Matches are distributed among these distances:
41 4 0.03
42 6 0.04
46 2 0.01
47 26 0.19
49 26 0.19
50 2 0.01
54 6 0.04
55 4 0.03
59 61 0.45
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (59 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:32477875 original size:106 final size:105
Alignment explanation
Indices: 32477747--32478042 Score: 461
Period size: 106 Copynumber: 2.9 Consensus size: 105
32477737 CTTTCACATT
32477747 CATCGCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATC-CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
32477812 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
65 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
32477853 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATC-CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
32477918 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
65 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
32477961 CAT---T---C-----GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CATCCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
32478015 TCTTATCACATATATACACTTTCACATT
66 CCTTATCACATATATACACTTTCACATT
32478043 TATTCAAATA
Statistics
Matches: 185, Mismatches: 3, Indels: 16
0.91 0.01 0.08
Matches are distributed among these distances:
94 19 0.10
96 57 0.31
101 1 0.01
104 1 0.01
106 74 0.40
108 33 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (105 bp):
CATCCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:32478007 original size:155 final size:153
Alignment explanation
Indices: 32477700--32478010 Score: 550
Period size: 155 Copynumber: 2.0 Consensus size: 153
32477690 CTTTCACATT
* *
32477700 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAG
1 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
32477765 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
32477830 ACTTTCACATTCATCACATCGGC
131 ACTTTCACATTCATCACATCGGC
* *
32477853 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
32477918 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
32477983 ACACTTTCACATTCATCACATCGGC
129 ACACTTTCACATTCATCACATCGGC
32478008 CAT
1 CAT
32478011 TAGGTCTTAT
Statistics
Matches: 150, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
153 71 0.47
155 79 0.53
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (153 bp):
CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGC
Found at i:32478008 original size:202 final size:200
Alignment explanation
Indices: 32477670--32478042 Score: 665
Period size: 202 Copynumber: 1.9 Consensus size: 200
32477660 TTGGCCACTC
32477670 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
1 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
* *
32477735 CACTTTCACATTCATCGCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
32477800 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
131 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
32477865 TATTA
196 TATTA
* *
32477870 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC--ATATA
* *
32477935 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
64 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
*
32478000 ACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATT
129 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
32478043 TATTCAAATA
Statistics
Matches: 164, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
200 56 0.34
202 108 0.66
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (200 bp):
GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
TATTA
Found at i:32481176 original size:40 final size:40
Alignment explanation
Indices: 32481132--32481403 Score: 409
Period size: 40 Copynumber: 6.8 Consensus size: 40
32481122 CCAGCATGAT
* * * * * *
32481132 TGCTCTTCAGGACCTAGCTCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
32481172 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
32481212 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
32481252 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
32481292 TGCTCTTTGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
32481332 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
32481372 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
32481404 CTCAATTTTC
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:32482884 original size:47 final size:47
Alignment explanation
Indices: 32482813--32483229 Score: 573
Period size: 47 Copynumber: 8.6 Consensus size: 47
32482803 CCCTTCGGGA
* * * * * * *
32482813 CTTATCACATTTATAGACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32482860 CCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32482907 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32482954 CTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32483001 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG---------C--C-ATTAGGC
32483060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32483107 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32483156 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32483203 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
32483230 TATTCAAATA
Statistics
Matches: 334, Mismatches: 22, Indels: 28
0.87 0.06 0.07
Matches are distributed among these distances:
47 240 0.72
48 1 0.00
49 45 0.13
50 1 0.00
56 1 0.00
58 1 0.00
59 45 0.13
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32483057 original size:59 final size:59
Alignment explanation
Indices: 32482981--32483197 Score: 226
Period size: 59 Copynumber: 4.1 Consensus size: 59
32482971 CTTTCACATT
*
32482981 CATCACTTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
32483040 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * *
32483099 CAT----TAGGCC-TTA----TCA-CATATATATACACTTTCACATTCAT--CA-----
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
32483141 CAT----T-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
32483195 CAT
1 CAT
32483198 TAGGTCTTAT
Statistics
Matches: 136, Mismatches: 9, Indels: 31
0.77 0.05 0.18
Matches are distributed among these distances:
41 4 0.03
42 6 0.04
46 2 0.01
47 26 0.19
49 26 0.19
50 2 0.01
54 6 0.04
55 4 0.03
59 60 0.44
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (59 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:32483063 original size:106 final size:105
Alignment explanation
Indices: 32482934--32483229 Score: 452
Period size: 106 Copynumber: 2.9 Consensus size: 105
32482924 CTTTCACATT
*
32482934 CATCGCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAG
1 CATC-CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
32482999 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
65 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
32483040 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATC-CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
32483105 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
65 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
32483148 CAT---T---C-----GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CATCCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
32483202 TCTTATCACATATATACACTTTCACATT
66 CCTTATCACATATATACACTTTCACATT
32483230 TATTCAAATA
Statistics
Matches: 184, Mismatches: 4, Indels: 16
0.90 0.02 0.08
Matches are distributed among these distances:
94 19 0.10
96 57 0.31
101 1 0.01
104 1 0.01
106 73 0.40
108 33 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (105 bp):
CATCCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:32483196 original size:155 final size:153
Alignment explanation
Indices: 32482887--32483197 Score: 543
Period size: 155 Copynumber: 2.0 Consensus size: 153
32482877 CTTTCACATT
* *
32482887 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAG
1 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
32482952 GCCTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAC
66 GCCTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAC
32483017 ACTTTCACATTCATCACATCGGC
131 ACTTTCACATTCATCACATCGGC
* *
32483040 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
32483105 GCCTTATCACATATATATACACTTTCACATTCATCACATT-GGCCATTCGGCCTTATCACATATA
66 GCCTTATCAC--ATATATACACTTTCACATTCATCAC-TTCGGCCATTAGGCCTTATCACATATA
32483169 TACACTTTCACATTCATCACATCGGC
128 TACACTTTCACATTCATCACATCGGC
32483195 CAT
1 CAT
32483198 TAGGTCTTAT
Statistics
Matches: 150, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
153 71 0.47
155 77 0.51
156 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (153 bp):
CATCACATCAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGC
Found at i:32483196 original size:202 final size:200
Alignment explanation
Indices: 32482857--32483229 Score: 656
Period size: 202 Copynumber: 1.9 Consensus size: 200
32482847 TTGGCCACTC
32482857 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
1 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
* *
32482922 CACTTTCACATTCATCGCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
66 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
32482987 TTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
131 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
32483052 TATTA
196 TATTA
* *
32483057 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC--ATATA
* *
32483122 TACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATC
64 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
*
32483187 ACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATT
129 ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
32483230 TATTCAAATA
Statistics
Matches: 163, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
200 56 0.34
202 107 0.66
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (200 bp):
GGCCCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGC
TATTA
Found at i:32486254 original size:46 final size:46
Alignment explanation
Indices: 32486187--32486357 Score: 252
Period size: 46 Copynumber: 3.7 Consensus size: 46
32486177 TGTAACCCGC
* * *
32486187 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
* *
32486233 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
* * * *
32486279 CCATAAGTGAACTCAGACTCAGCTCAATGAGTTCGGATGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
*
32486325 CCATAAGTGAACTCGAACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
32486358 TAGATGCCCA
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 110 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:32491214 original size:46 final size:46
Alignment explanation
Indices: 32491147--32491365 Score: 219
Period size: 46 Copynumber: 4.7 Consensus size: 46
32491137 TGTAACCTGC
*
32491147 CCATAAGA-GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAA-ATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
* * *
32491193 CCATAAATGAACTTGGACTCAACTCAACGAGTTC-GG-ATTCCTAGTT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTA--T
* ** * * **
32491239 ACATTTCACGAACTCGAACTCAACTCAACGAGTTCGTACGTTCGTAT
1 CCA-TAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
* * ** *
32491286 CCATAAGTGAACTCGGACTCAGCTCAACGAGTTCGGTTGTTCGCAT
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
* *
32491332 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CCATAAATGAACTCGGACTCAACTCAACGAGTTC
32491366 AGATGCCCAA
Statistics
Matches: 140, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
44 5 0.04
45 3 0.02
46 98 0.70
47 29 0.21
49 5 0.04
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (46 bp):
CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGTAT
Found at i:32496823 original size:24 final size:24
Alignment explanation
Indices: 32496791--32496839 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
32496781 TGCCATTATG
32496791 ACACGTTTCAGATAATGTGTAGCC
1 ACACGTTTCAGATAATGTGTAGCC
32496815 ACACGTTTCAGATAATGTGTAGCC
1 ACACGTTTCAGATAATGTGTAGCC
32496839 A
1 A
32496840 AGCTGGCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
ACACGTTTCAGATAATGTGTAGCC
Found at i:32498851 original size:22 final size:22
Alignment explanation
Indices: 32498826--32498868 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
32498816 TAGCCCAACT
*
32498826 ATGGTCTTACACATA-TCTTACC
1 ATGGCCTTAC-CATAGTCTTACC
*
32498848 ATGGCCTTGCCATAGTCTTAC
1 ATGGCCTTACCATAGTCTTAC
32498869 ACATATCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (22 bp):
ATGGCCTTACCATAGTCTTACC
Found at i:32503038 original size:42 final size:42
Alignment explanation
Indices: 32502992--32503186 Score: 216
Period size: 42 Copynumber: 4.6 Consensus size: 42
32502982 TGAGTTTACG
*
32502992 TGTAAGACTATATCTGGGATATGGCATC-ATTATGAGAATTCA
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGAATTCA
* * * *
32503034 TGTAAGACCATGTTTGGGACATGGCATCGATATGAGAATTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGAATTCA
* * * * *
32503076 TGTAAGACAATGTTTGGGACATGGCATCGATATGAGAATT-G
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGAATTCA
* * *
32503117 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAG-ATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAAT-TCA
*
32503160 TGTAAGACCATATCTGGAATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
32503187 TGGTATGATT
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
41 18 0.14
42 95 0.72
43 19 0.14
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGAATTCA
Found at i:32511218 original size:93 final size:93
Alignment explanation
Indices: 32511106--32511277 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32511096 GCCCATAAGT
* * *
32511106 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
32511171 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
32511199 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
32511264 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
32511278 CAAATGTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:32511273 original size:46 final size:46
Alignment explanation
Indices: 32511098--32511273 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
32511088 TGTAACCCGC
* * *
32511098 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32511144 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
32511190 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
32511237 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32511274 TGCCCAAATG
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:32514413 original size:34 final size:34
Alignment explanation
Indices: 32514341--32514587 Score: 325
Period size: 34 Copynumber: 7.2 Consensus size: 34
32514331 TGTAAAATGT
* *
32514341 CATACCTACGTTTCATAACTCAGTATGGAAAATAC
1 CATACCTACGTATCATAGCTCAGTATGG-AAATAC
* * *
32514376 CATACCTATGTATCATAGCTCGGTATAGAAATAC
1 CATACCTACGTATCATAGCTCAGTATGGAAATAC
* * * *
32514410 CATACCTACATATTACAGCTCGGTATGGAAATAC
1 CATACCTACGTATCATAGCTCAGTATGGAAATAC
*
32514444 CATACCTACGTATGATAGCTCAGTATGGAAATAC
1 CATACCTACGTATCATAGCTCAGTATGGAAATAC
*
32514478 CATACTTACGTATCATAGCTCAGTATGGAAATAC
1 CATACCTACGTATCATAGCTCAGTATGGAAATAC
* * *
32514512 AATACCTATGTATCATAGCTCAGTTTGGAAATAC
1 CATACCTACGTATCATAGCTCAGTATGGAAATAC
* *
32514546 GATACCTACATATCATAGCTC-GATATGGAAATAC
1 CATACCTACGTATCATAGCTCAG-TATGGAAATAC
32514580 CATACCTA
1 CATACCTA
32514588 TGCTTCACAT
Statistics
Matches: 186, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
33 1 0.01
34 162 0.87
35 23 0.12
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (34 bp):
CATACCTACGTATCATAGCTCAGTATGGAAATAC
Found at i:32516333 original size:793 final size:793
Alignment explanation
Indices: 32514807--32516907 Score: 4186
Period size: 793 Copynumber: 2.7 Consensus size: 793
32514797 ATATGAATTT
32514807 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
1 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
32514872 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
66 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
32514937 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
131 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
32515002 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
196 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
32515067 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
261 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
32515132 ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
326 ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
32515197 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
391 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
32515262 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGTATCT
456 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGTATCT
32515327 GCCTCTCATCACCCTCGCATAACAATTAAGCATGCATTGCAAAAGGAATGTTATTTTTCAGCATA
521 GCCTCTCATCACCCTCGCATAACAATTAAGCATGCATTGCAAAAGGAATGTTATTTTTCAGCATA
32515392 TGAAGAGACATAAGTAACAATGCTATACATAAATATCTTATCTCTTAGTCACCTTAAGGTGGGTT
586 TGAAGAGACATAAGTAACAATGCTATACATAAATATCTTATCTCTTAGTCACCTTAAGGTGGGTT
*
32515457 TACCAAACATCTCTTTTATTTACATTTTTGAAGGTATAAGAATAAAAATCTCTTTATGGGAAAAC
651 TACCAAACATCTCTTTTATTTACATTTTTGAAGGTATAAGAATAAAAATCTCTTTACGGGAAAAC
32515522 CCCATCTTTGTTGATCTAATGGACTTGTCGGAGATCTATCTCCTTATCCAAGAAGTTAAAGGTTT
716 CCCATCTTTGTTGATCTAATGGACTTGTCGGAGATCTATCTCCTTATCCAAGAAGTTAAAGGTTT
32515587 ATTCATCCTTTTG
781 ATTCATCCTTTTG
32515600 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
1 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
32515665 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
66 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
32515730 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
131 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
32515795 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
196 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
32515860 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
261 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
32515925 ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
326 ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
32515990 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
391 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
32516055 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGTATCT
456 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGTATCT
32516120 GCCTCTCATCACCCTCGCATAACAATTAAGCATGCATTGCAAAAGGAATGTTATTTTTCAGCATA
521 GCCTCTCATCACCCTCGCATAACAATTAAGCATGCATTGCAAAAGGAATGTTATTTTTCAGCATA
32516185 TGAAGAGACATAAGTAACAATGCTATACATAAATATCTTATCTCTTAGTCACCTTAAGGTGGGTT
586 TGAAGAGACATAAGTAACAATGCTATACATAAATATCTTATCTCTTAGTCACCTTAAGGTGGGTT
32516250 TACCAAACATCTCTTTTATTTACATTTTTGAAGGTATAAGAATAAAAATCTCTTTACGGGAAAAC
651 TACCAAACATCTCTTTTATTTACATTTTTGAAGGTATAAGAATAAAAATCTCTTTACGGGAAAAC
32516315 CCCATCTTTGTTGATCTAATGGACTTGTCGGAGATCTATCTCCTTATCCAAGAAGTTAAAGGTTT
716 CCCATCTTTGTTGATCTAATGGACTTGTCGGAGATCTATCTCCTTATCCAAGAAGTTAAAGGTTT
32516380 ATTCATCCTTTTG
781 ATTCATCCTTTTG
32516393 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
1 ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
32516458 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
66 TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
32516523 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
131 ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
32516588 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
196 TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
32516653 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
261 CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
32516718 AC-TTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
326 ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
32516782 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
391 CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
32516847 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGT
456 TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGT
32516908 CACAAAAACA
Statistics
Matches: 1307, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
792 188 0.14
793 1119 0.86
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (793 bp):
ACCTGGGCCAATTTGTAGAAGTTATGGAAATTCAGAGACTAATCAGAAATTTCCTCTATTCCACG
TTTATCTTCGAATTCTCGATCTATAATATAGAATTTTCCATTCATTAGCATTCACTCCAGTTCTA
ATTCACTTCACAATTTATGCCCTTAAATTTTCAAAATTACACTTTTACCCTAAGATTTACATTTT
TTACAATATAGTCCTGTGCAATTCACCCATCAACTAAGCTAATTTTTCTGAATTCACACTTTGTT
CCACTATTCCAAACTACCACACAACCTTTGATAATCATAATTTCAACATTAAACCTTAATTCACA
ACTTTTTCACAATTAGGTCCTAAAATCAATTTCTATTGAAATTACTTGATAAAATCATCATACAA
CAAAATTAAAGCTTCAAATCCATGTTAATTCATCATAAACAACCAACACTTATCAATGGTAACTT
TCAATTTTGTCCATAGAATCAAAAAATAATGAATTAAATACTTGAACCTAATTGTAAAAGTATCT
GCCTCTCATCACCCTCGCATAACAATTAAGCATGCATTGCAAAAGGAATGTTATTTTTCAGCATA
TGAAGAGACATAAGTAACAATGCTATACATAAATATCTTATCTCTTAGTCACCTTAAGGTGGGTT
TACCAAACATCTCTTTTATTTACATTTTTGAAGGTATAAGAATAAAAATCTCTTTACGGGAAAAC
CCCATCTTTGTTGATCTAATGGACTTGTCGGAGATCTATCTCCTTATCCAAGAAGTTAAAGGTTT
ATTCATCCTTTTG
Found at i:32518455 original size:20 final size:20
Alignment explanation
Indices: 32518430--32518467 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32518420 GCCACATATA
32518430 TCATGAGCTCAGACCACAAC
1 TCATGAGCTCAGACCACAAC
*
32518450 TCATGAGCTCAGATCACA
1 TCATGAGCTCAGACCACA
32518468 TAATTCCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.18
Consensus pattern (20 bp):
TCATGAGCTCAGACCACAAC
Found at i:32520361 original size:42 final size:42
Alignment explanation
Indices: 32520313--32520551 Score: 259
Period size: 42 Copynumber: 5.7 Consensus size: 42
32520303 TATGAGTTTA
* * *
32520313 CGTGTAAGACCATATCTAGGATATGGCATCGTTATGAGAATT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATT
** * * * *
32520355 TTTGTAAGACCATGTTTGGGACATGGCATCAATATGAGAGTT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATT
* *
32520397 CGTGTAAGACCATGTCTAGGACATGGCATCGATATGAGAATT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATT
* * *
32520439 TGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGAA-T
1 CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATT
* *
32520480 CGTGTAAGACCATAGCTGGG-CTATTGGCATCGATATGAG-ATCC
1 CGTGTAAGACCATATCTGGGAC-A-TGGCATCGATATGAGAAT-T
* * *
32520523 CCTGAAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGACATGGCAT
32520552 TGGTATGATT
Statistics
Matches: 165, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.01
41 20 0.12
42 126 0.76
43 18 0.11
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATGGCATCGATATGAGAATT
Found at i:32527684 original size:15 final size:15
Alignment explanation
Indices: 32527660--32527707 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
32527650 AGGAAACCGA
32527660 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
32527675 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
32527689 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
32527705 ATA
1 ATA
32527708 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32531933 original size:15 final size:15
Alignment explanation
Indices: 32531909--32531956 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
32531899 AGGAAACCGA
32531909 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
32531924 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
32531938 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
32531954 ATA
1 ATA
32531957 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32538925 original size:42 final size:41
Alignment explanation
Indices: 32538866--32538987 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 41
32538856 TTAGGGTTAC
* * *
32538866 TGAGATTTTGTGTAAGACCATATCTAGGATATGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATATGGCATCAATA
* * * *
32538908 TGAGACTTCGTGTAAGACCGTAGCTGGGCTATTGCCATCAATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCAATA
* *
32538951 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCAT
32538988 TGGTACGGTA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 32 0.50
43 32 0.50
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:32548099 original size:23 final size:23
Alignment explanation
Indices: 32548073--32548123 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
32548063 AGTTATAGCT
32548073 TTCTAATCCATGAAGTACTCCTA
1 TTCTAATCCATGAAGTACTCCTA
32548096 TTCTAATCCATGAAGTACTCCTA
1 TTCTAATCCATGAAGTACTCCTA
32548119 TTCTA
1 TTCTA
32548124 GGGCTAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (23 bp):
TTCTAATCCATGAAGTACTCCTA
Found at i:32548355 original size:32 final size:32
Alignment explanation
Indices: 32548313--32548383 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
32548303 AAAACGATGC
* *
32548313 ATTAAGTGATTGAAGAACGGAAAGATCTCACCG
1 ATTAA-TGATTGAAGAACGAAAAGAGCTCACCG
32548346 ATTAATGATTGAAGAACGAAAAGAGCTCACCG
1 ATTAATGATTGAAGAACGAAAAGAGCTCACCG
32548378 ATTAAT
1 ATTAAT
32548384 CAAGAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 31 0.86
33 5 0.14
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.23
Consensus pattern (32 bp):
ATTAATGATTGAAGAACGAAAAGAGCTCACCG
Found at i:32553811 original size:30 final size:30
Alignment explanation
Indices: 32553775--32553834 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
32553765 AAATTTGAAG
32553775 TTGAAAAAATTATTTTATTATTATTTTAGA
1 TTGAAAAAATTATTTTATTATTATTTTAGA
32553805 TTGAAAAAATTATTTTATTATTATTTTAGA
1 TTGAAAAAATTATTTTATTATTATTTTAGA
32553835 GTCATAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (30 bp):
TTGAAAAAATTATTTTATTATTATTTTAGA
Found at i:32554964 original size:27 final size:27
Alignment explanation
Indices: 32554916--32555074 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
32554906 GCGAGGCTGC
* *
32554916 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
32554943 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
32554969 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
32554996 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
32555023 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
32555050 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
32555075 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:32555009 original size:54 final size:54
Alignment explanation
Indices: 32554934--32555074 Score: 239
Period size: 54 Copynumber: 2.6 Consensus size: 54
32554924 GTGACGAAGT
*
32554934 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
32554988 CACCAGATCAGATAATCGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
32555042 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
32555075 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:32555482 original size:8 final size:8
Alignment explanation
Indices: 32555466--32555495 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
32555456 CTCAAAATAC
32555466 CGGCTTTT
1 CGGCTTTT
*
32555474 CGGCATTT
1 CGGCTTTT
32555482 CGGCTTTT
1 CGGCTTTT
32555490 CGGCTT
1 CGGCTT
32555496 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:32556710 original size:26 final size:26
Alignment explanation
Indices: 32556674--32556782 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
32556664 ATGAAATGCC
*
32556674 TATCATGGAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
32556700 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
32556726 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
32556752 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
32556778 TATCA
1 TATCA
32556783 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:32558199 original size:46 final size:46
Alignment explanation
Indices: 32558052--32558223 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
32558042 CATTTGTGTG
* * *
32558052 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATAAG-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAG--ACCTTGAGACGA
* * *
32558098 AGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACATTGAGAC-A
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGACCTTGAGACGA
32558144 AGGGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CCTTGAGACGTA
1 A--GCTAGTGTAAGACATGTCTGGGACATGCATCAGACCTTGAGACG-A
* *
32558192 AGTTAGTGTAAGACTTGTCTGGGACATGCATC
1 AGCTAGTGTAAGACATGTCTGGGACATGCATC
32558224 GACTACGGGA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
45 5 0.05
46 57 0.53
47 28 0.26
48 18 0.17
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGACCTTGAGACGA
Found at i:32558246 original size:46 final size:46
Alignment explanation
Indices: 32558056--32558259 Score: 136
Period size: 46 Copynumber: 4.4 Consensus size: 46
32558046 TGTGTGAGCT
* ** *
32558056 AGTGTAAGACATGTCTGGGACATGCATCAG-C-C-ACATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAGA-CGT-A-AGTC
* * *
32558102 AGTGTAAGACCATGTCTAGGACATGGCATC-GACATTGAGAC--AAGGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGAC-TCGAGACGTAA-GTC
* * *
32558149 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGACGTAAGTT
1 -AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAGACGTAAGTC
* * *
32558196 AGTGTAAGACTTGTCTGGGACATGCATC-GACTACGGGATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGACT-CGAGACGTA-AGTC
32558242 AGTGTAAGACCATGTCTG
1 AGTGTAAGA-CATGTCTG
32558260 CGATATGGCA
Statistics
Matches: 128, Mismatches: 16, Indels: 27
0.75 0.09 0.16
Matches are distributed among these distances:
45 4 0.03
46 65 0.51
47 40 0.31
48 17 0.13
51 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGACTCGAGACGTAAGTC
Found at i:32558310 original size:140 final size:140
Alignment explanation
Indices: 32558055--32558313 Score: 326
Period size: 140 Copynumber: 1.9 Consensus size: 140
32558045 TTGTGTGAGC
**
32558055 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAGAGCCAGTGTAAGACCATGTCTA
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGGATAAGAGCCAGTGTAAGACCATGTCTA
* * *
32558120 GGACATGGCATCGACATTGAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTG
66 GGACATGGCATCGACATTGAGACAAGAGCAAGTGTAAGACATGTCCGGGACATGCATCAGCCTTG
32558185 AGACGTAAGT
131 AGACGTAAGT
* * * * * *
32558195 TAGTGTAAGACTTGTCTGGGACATGCATC-GACTACGGGATGATAGTCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCAG-CCACAGGATAAGAGCCAGTGTAAGACCATGTCT
* * * * *
32558259 -GCGATATGGCATCGA-TTTGAGATATGAGCAAGTGTAAGACCATTTCCGGGACATG
65 AG-GACATGGCATCGACATTGAGACAAGAGCAAGTGTAAGA-CATGTCCGGGACATG
32558314 GCATTGGCAC
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
139 21 0.21
140 79 0.79
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (140 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCACAGGATAAGAGCCAGTGTAAGACCATGTCTA
GGACATGGCATCGACATTGAGACAAGAGCAAGTGTAAGACATGTCCGGGACATGCATCAGCCTTG
AGACGTAAGT
Found at i:32559418 original size:21 final size:21
Alignment explanation
Indices: 32559392--32559431 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32559382 GACACAAGCA
*
32559392 TGTTACCCTTCCATACGGGCG
1 TGTTACCCTTCCACACGGGCG
32559413 TGTTACCCTTCCACACGGG
1 TGTTACCCTTCCACACGGG
32559432 TGTGCCCTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.35, G:0.23, T:0.28
Consensus pattern (21 bp):
TGTTACCCTTCCACACGGGCG
Found at i:32565950 original size:19 final size:19
Alignment explanation
Indices: 32565926--32565969 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32565916 TGCCTCTTTT
*
32565926 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
*
32565945 TGCATTGCATTTTATCATA
1 TGCATTGCATTTCATCATA
32565964 TGCATT
1 TGCATT
32565970 AAATTTCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:32568468 original size:10 final size:10
Alignment explanation
Indices: 32568453--32568480 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
32568443 CAGAGGTAGC
32568453 AAAAAAAACA
1 AAAAAAAACA
32568463 AAAAAAAACA
1 AAAAAAAACA
32568473 AAAAAAAA
1 AAAAAAAA
32568481 ATATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:32568469 original size:11 final size:11
Alignment explanation
Indices: 32568453--32568492 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
32568443 CAGAGGTAGC
32568453 AAAAAAAAC-A
1 AAAAAAAACAA
32568463 AAAAAAAACAA
1 AAAAAAAACAA
*
32568474 AAAAAAAATATA
1 AAAAAAAACA-A
32568486 AAAAAAA
1 AAAAAAA
32568493 GATTGTGGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 9 0.33
11 10 0.37
12 8 0.30
ACGTcount: A:0.90, C:0.05, G:0.00, T:0.05
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:32569424 original size:53 final size:53
Alignment explanation
Indices: 32569344--32569446 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
32569334 TGGGCTATGC
*
32569344 TCCCAATCAAGTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCAT
1 TCCCAATAAAGTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCAT
*
32569397 TCCCAATAAATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATT
1 TCCCAATAAAGTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATT
32569447 TGTTTCGAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.25, C:0.21, G:0.05, T:0.49
Consensus pattern (53 bp):
TCCCAATAAAGTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCAT
Found at i:32569444 original size:27 final size:27
Alignment explanation
Indices: 32569361--32569446 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
32569351 CAAGTTCCTT
32569361 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATTACATTTGCTATCTTTGATTAA
** ** **
32569388 CTTATT-CATTCCCAATAAATTTCCTT--
1 CTTATTACATTTGC--TATCTTTGATTAA
32569414 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATTACATTTGCTATCTTTGATTAA
32569441 CTTATT
1 CTTATT
32569447 TGTTTCGAGC
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 7 0.17
26 11 0.26
27 17 0.40
28 7 0.17
ACGTcount: A:0.26, C:0.19, G:0.05, T:0.51
Consensus pattern (27 bp):
CTTATTACATTTGCTATCTTTGATTAA
Found at i:32569929 original size:46 final size:46
Alignment explanation
Indices: 32569892--32569999 Score: 162
Period size: 46 Copynumber: 2.3 Consensus size: 46
32569882 TGAGCTCCAA
*
32569892 TGAGATGGATTGAAGAGGATACAAATCCTATACCCCTGAGTTGCAG
1 TGAGATGGATTGAAGAGGATACAAATCCGATACCCCTGAGTTGCAG
* * * *
32569938 TGGGATGGATTGGAGATGATACAAATCCGATACCCTTGAGTTGCAG
1 TGAGATGGATTGAAGAGGATACAAATCCGATACCCCTGAGTTGCAG
*
32569984 TGAGATGGATGGAAGA
1 TGAGATGGATTGAAGA
32570000 AACCAAATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (46 bp):
TGAGATGGATTGAAGAGGATACAAATCCGATACCCCTGAGTTGCAG
Found at i:32570458 original size:45 final size:44
Alignment explanation
Indices: 32570351--32570831 Score: 122
Period size: 45 Copynumber: 10.8 Consensus size: 44
32570341 GTGAATCCAC
* * * * *
32570351 AAATCTCATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGTTGA
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
* * *
32570395 AGATGTTATC-TCCTTGAAGTTGCAGTGGAGTAGA-TCAAATATGGA
1 AAATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTCAAAT-T-GA
* * * * ***
32570440 AAATCTTATCTTCCTGAAGTTACAGTGAAACAGATT-GAAGCCA
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
* ** * * * * * **
32570483 CCAGCCTTATC-TCCTTGAAGTTGTAGCGGAGCAAACTGAAGATAAA
1 -AAATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTCAA-ATTGA
* * * ** * * * *
32570529 AAATCTCATCTCCCTAAAGTAACAATGGAGCATATTGAAGTT-A
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
* *
32570572 AAGATCTTATC-TCCTTGAAGTTGCAGTGGAGTAGA-TCAAATATGGC
1 AA-ATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTCAAAT-T-GA
* * * * * ***
32570618 GAATCCTATCTTCTTGAAGTTGCAGCGAAGCAGATT-AAAGCCA
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
* ** * * * * * *
32570661 CTAGCCTTATC-CCTCTGAAGTTGCAGAGGAGCAGACTAAAGATAGC
1 -AAATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTCAA-ATTGA
* * * * * * *
32570707 AAATCTCATCCTCCTGAAGTAGCAGTGGAGCATATTGAAGTTTA
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
* * *
32570751 AGAA-CTTATC-TCCTTGAAGTTGCAGTGGAGTAGA-TCAATTATGGC
1 A-AATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTCAA--ATTGA
* * * *
32570796 GAATCTTATCTTCCTAAAGTTACAGTGGAACAGATT
1 AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATT
32570832 GAAGTCACTA
Statistics
Matches: 299, Mismatches: 109, Indels: 56
0.64 0.23 0.12
Matches are distributed among these distances:
43 26 0.09
44 122 0.41
45 133 0.44
46 18 0.06
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
AAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTCAAATTGA
Found at i:32570502 original size:89 final size:89
Alignment explanation
Indices: 32570350--32570924 Score: 402
Period size: 89 Copynumber: 6.5 Consensus size: 89
32570340 GGTGAATCCA
* * * **
32570350 CAAATCTCATCTCCCTGAAG-TAGCAGTGGAGCAGATTGAAGTTGA--AGATGTTATCTCCTTGA
1 CAAATCTTATCTTCCTGAAGTTA-CAGTGGAGCAGATTGAAG-TCACTAG-CCTTATCTCCTTGA
32570412 AGTTGCAGTGGAGTAGATCAAATATGG
63 AGTTGCAGTGGAGTAGATCAAATATGG
* * * * *
32570439 AAAATCTTATCTTCCTGAAGTTACAGTGAAACAGATTGAAGCCACCAGCCTTATCTCCTTGAAGT
1 CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGTCACTAGCCTTATCTCCTTGAAGT
* * * * * *
32570504 TGTAGCGGAGCAAACTGAAGATA--A
66 TGCAGTGGAGTAGA-TCAA-ATATGG
* * * * * * * * * *
32570528 AAAATCTCATCTCCCTAAAGTAACAATGGAGCATATTGAAGTTA-AAGATCTTATCTCCTTGAAG
1 CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGTCACTAG-CCTTATCTCCTTGAAG
32570592 TTGCAGTGGAGTAGATCAAATATGG
65 TTGCAGTGGAGTAGATCAAATATGG
* * * * * * * *
32570617 CGAATCCTATCTTCTTGAAGTTGCAGCGAAGCAGATTAAAGCCACTAGCCTTATC-CCTCTGAAG
1 CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGTCACTAGCCTTATCTCCT-TGAAG
* * * *
32570681 TTGCAGAGGAGCAGA-CTAAAGATAG
65 TTGCAGTGGAGTAGATC-AAATATGG
* * * * *
32570706 CAAATCTCATCCTCCTGAAG-TAGCAGTGGAGCATATTGAAGT--TTAAGAACTTATCTCCTTGA
1 CAAATCTTATCTTCCTGAAGTTA-CAGTGGAGCAGATTGAAGTCACT-AG-CCTTATCTCCTTGA
*
32570768 AGTTGCAGTGGAGTAGATCAATTATGG
63 AGTTGCAGTGGAGTAGATCAAATATGG
* * * * * *
32570795 CGAATCTTATCTTCCTAAAGTTACAGTGGAACAGATTGAAGTCACTAGCTTTATCTCCCTAAAGT
1 CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGTCACTAGCCTTATCTCCTTGAAGT
** * ** *
32570860 AACAGCGGAACAGACTGAAGATA--G
66 TGCAGTGGAGTAGA-TCAA-ATATGG
* * * *
32570884 CAAATCTCATTTTCCTGAAGTTGCAGTGGAGCAAATTGAAG
1 CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAG
32570925 CTATAAGTTA
Statistics
Matches: 367, Mismatches: 98, Indels: 42
0.72 0.19 0.08
Matches are distributed among these distances:
87 4 0.01
88 13 0.04
89 324 0.88
90 20 0.05
91 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (89 bp):
CAAATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGTCACTAGCCTTATCTCCTTGAAGT
TGCAGTGGAGTAGATCAAATATGG
Found at i:32570602 original size:44 final size:44
Alignment explanation
Indices: 32570353--32570785 Score: 209
Period size: 44 Copynumber: 9.8 Consensus size: 44
32570343 GAATCCACAA
* * * *
32570353 ATCTCATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGTTGAAG
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAG
* * * *
32570397 ATGTTATCTCCTTGAAGTTGCAGTGGAGTAGA-TCAAATATGGAAA-
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGT-T--AAAG
* * * ** *
32570442 ATCTTATCTTCC-TGAAGTTACAGTGAAACAGATTGAAGCCACCAG
1 ATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTA-AAG
* * * * * * *
32570487 -CCTTATCTCCTTGAAGTTGTAGCGGAGCAAACTGAAGATAAAAA
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAG-TTAAAG
* * * ** * *
32570531 ATCTCATCTCCCTAAAGTAACAATGGAGCATATTGAAGTTAAAG
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAG
* * * ***
32570575 ATCTTATCTCCTTGAAGTTGCAGTGGAGTAGA-TCAAATATGGCG
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGT-TAAAG
* * * * * ** *
32570619 AATCCTATCTTCTTGAAGTTGCAGCGAAGCAGATTAAAGCCACTAG
1 -ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTA-AAG
* * * * *
32570665 -CCTTATC-CCTCTGAAGTTGCAGAGGAGCAGACTAAAGATAGCAA-
1 ATCTTATCTCCT-TGAAGTTGCAGTGGAGCAGATTGAAGTTA--AAG
* * * *
32570709 ATCTCATCCTCC-TGAAGTAGCAGTGGAGCATATTGAAGTTTAAG
1 ATCTTAT-CTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAG
* *
32570753 AACTTATCTCCTTGAAGTTGCAGTGGAGTAGAT
1 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGAT
32570786 CAATTATGGC
Statistics
Matches: 277, Mismatches: 91, Indels: 42
0.68 0.22 0.10
Matches are distributed among these distances:
43 20 0.07
44 137 0.49
45 105 0.38
46 13 0.05
47 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTAAAG
Found at i:32570661 original size:178 final size:177
Alignment explanation
Indices: 32570350--32570924 Score: 767
Period size: 178 Copynumber: 3.2 Consensus size: 177
32570340 GGTGAATCCA
* * *
32570350 CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGTTGAAGATGTTATCTCCTTGAAGT
1 CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGTTAAAGATCTTATCTCCTTGAAGT
** *
32570415 TGCAGTGGAGTAGATCAAATATGGAAAATCTTATCTTCCTGAAGTTACAGTGAAACAGATTGAAG
66 TGCAGTGGAGTAGATCAAATATGGCGAATCTTATCTTCCTGAAGTTACAGCG-AACAGATTGAAG
* * * *
32570480 CCACCAGCCTTATCTCCTTGAAGTTGTAGCGGAGCAAACTGAAGATAA
130 CCACTAGCCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGATAG
* * * *
32570528 AAAATCTCATCTCCCTAAAGTAACAATGGAGCATATTGAAGTTAAAGATCTTATCTCCTTGAAGT
1 CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGTTAAAGATCTTATCTCCTTGAAGT
* * * *
32570593 TGCAGTGGAGTAGATCAAATATGGCGAATCCTATCTTCTTGAAGTTGCAGCGAAGCAGATTAAAG
66 TGCAGTGGAGTAGATCAAATATGGCGAATCTTATCTTCCTGAAGTTACAGCGAA-CAGATTGAAG
* *
32570658 CCACTAGCCTTATC-CCTCTGAAGTTGCAGAGGAGCAGACTAAAGATAG
130 CCACTAGCCTTATCTCCT-TGAAGTTGCAGCGGAGCAGACTGAAGATAG
* *
32570706 CAAATCTCATC-CTCCTGAAGTAGCAGTGGAGCATATTGAAGTTTAAGAACTTATCTCCTTGAAG
1 CAAATCTCATCTC-CCTGAAGTAGCAGTGGAGCATATTGAAGTTAAAGATCTTATCTCCTTGAAG
* * *
32570770 TTGCAGTGGAGTAGATCAATTATGGCGAATCTTATCTTCCTAAAGTTACAGTGGAACAGATTGAA
65 TTGCAGTGGAGTAGATCAAATATGGCGAATCTTATCTTCCTGAAGTTACAG-CGAACAGATTGAA
* * * * ** *
32570835 GTCACTAGCTTTATCTCCCTAAAGTAACAGCGGAACAGACTGAAGATAG
129 GCCACTAGCCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGATAG
* * * *
32570884 CAAATCTCATTTTCCTGAAGTTGCAGTGGAGCAAATTGAAG
1 CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCATATTGAAG
32570925 CTATAAGTTA
Statistics
Matches: 345, Mismatches: 46, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
177 6 0.02
178 334 0.97
179 5 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (177 bp):
CAAATCTCATCTCCCTGAAGTAGCAGTGGAGCATATTGAAGTTAAAGATCTTATCTCCTTGAAGT
TGCAGTGGAGTAGATCAAATATGGCGAATCTTATCTTCCTGAAGTTACAGCGAACAGATTGAAGC
CACTAGCCTTATCTCCTTGAAGTTGCAGCGGAGCAGACTGAAGATAG
Found at i:32572569 original size:4 final size:4
Alignment explanation
Indices: 32572560--32572587 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
32572550 TGTTTGATGT
32572560 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA
32572588 TTTTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:32572821 original size:24 final size:23
Alignment explanation
Indices: 32572787--32572848 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
32572777 TAGAGTATTA
*
32572787 TTAT-TATTATTTTATTGT-TTAT
1 TTATATATTATTTTATTATCTT-T
32572809 TTATATATCTA-TTTATTATCCTTT
1 TTATATAT-TATTTTATTAT-CTTT
32572833 TTATATATATATTTTA
1 TTATATAT-TATTTTA
32572849 AAATTTAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
22 4 0.12
23 10 0.30
24 13 0.39
25 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (23 bp):
TTATATATTATTTTATTATCTTT
Found at i:32572942 original size:16 final size:16
Alignment explanation
Indices: 32572890--32572943 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
32572880 TATATTGTTA
32572890 TTATTA-TTAT-TACT
1 TTATTATTTATGTACT
*
32572904 ATTATTATTTATTGT-CA
1 -TTATTATTTA-TGTACT
*
32572921 TCATTATTTATGTACT
1 TTATTATTTATGTACT
32572937 TTATTAT
1 TTATTAT
32572944 AAATTGTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 9 0.29
16 19 0.61
17 2 0.06
18 1 0.03
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (16 bp):
TTATTATTTATGTACT
Found at i:32577842 original size:68 final size:68
Alignment explanation
Indices: 32577731--32577868 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
32577721 ACCCGATGAA
32577731 TGCCTAAAATGTGCTATATCTTTGCTACGTGATTCTGCATACTATTGGTGGAATACGCTAATTTC
1 TGCCTAAAATGTGCTATATCTTTGCTACGTGATTCTGCATACTATTGGTGGAATACGCTAATTTC
32577796 TGT
66 TGT
*
32577799 TGCCTAAAATGTGCTATATCTTTGCTACGTGATTCTGCCTACTATTGGTGGAATACGCTAATTTC
1 TGCCTAAAATGTGCTATATCTTTGCTACGTGATTCTGCATACTATTGGTGGAATACGCTAATTTC
32577864 TGT
66 TGT
32577867 TG
1 TG
32577869 TGCCCAGAGA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (68 bp):
TGCCTAAAATGTGCTATATCTTTGCTACGTGATTCTGCATACTATTGGTGGAATACGCTAATTTC
TGT
Found at i:32583050 original size:39 final size:40
Alignment explanation
Indices: 32582908--32583053 Score: 204
Period size: 40 Copynumber: 3.7 Consensus size: 40
32582898 TGAGGAATTG
32582908 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
32582948 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
* * * * * *
32582988 TATCCGGGCTTAAAGACCTGCAGGCTTTGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
* * *
32583028 TATCTGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAAGCTA
32583054 CGAGCTGGTA
Statistics
Matches: 96, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 14 0.15
40 82 0.85
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATGT
Found at i:32584476 original size:20 final size:22
Alignment explanation
Indices: 32584436--32584477 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
32584426 ATTACTAATA
*
32584436 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
32584458 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
32584478 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:32584565 original size:15 final size:15
Alignment explanation
Indices: 32584533--32584603 Score: 54
Period size: 15 Copynumber: 4.5 Consensus size: 15
32584523 TATTATTCAC
*
32584533 ATATTATTAA-AATTA
1 ATATT-TTAATAATAA
32584548 ATATTTTAATAATAA
1 ATATTTTAATAATAA
*
32584563 ATATTTATTACAATTATAA
1 ATA-TT-TT--AATAATAA
*
32584582 ATATATTAATAATAA
1 ATATTTTAATAATAA
*
32584597 ATGTTTT
1 ATATTTT
32584604 GTAGTACAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
14 4 0.09
15 24 0.53
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (15 bp):
ATATTTTAATAATAA
Found at i:32585639 original size:25 final size:26
Alignment explanation
Indices: 32585611--32585661 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32585601 AGATTAAATG
32585611 ATACTTAG-AAAAAAATATAAATTTA
1 ATACTTAGAAAAAAAATATAAATTTA
32585636 ATACTTAGAAAAAAAATATAAATTTA
1 ATACTTAGAAAAAAAATATAAATTTA
32585662 CTTTTTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (26 bp):
ATACTTAGAAAAAAAATATAAATTTA
Found at i:32586533 original size:13 final size:13
Alignment explanation
Indices: 32586494--32586537 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
32586484 ACTCTTCCAC
32586494 AAGAAAACTC-AA
1 AAGAAAACTCAAA
* *
32586506 AAGAAATTCTTAAA
1 AAGAAA-ACTCAAA
32586520 AAGAAAACTCAAA
1 AAGAAAACTCAAA
32586533 AAGAA
1 AAGAA
32586538 TTTATTAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 6 0.23
13 12 0.46
14 8 0.31
ACGTcount: A:0.66, C:0.11, G:0.09, T:0.14
Consensus pattern (13 bp):
AAGAAAACTCAAA
Found at i:32586545 original size:27 final size:26
Alignment explanation
Indices: 32586494--32586545 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
32586484 ACTCTTCCAC
*
32586494 AAGAAAACTCAAAAGAAATTCTTAAA
1 AAGAAAACTCAAAAGAAATTATTAAA
*
32586520 AAGAAAACTCAAAAAGAATTTATTAA
1 AAGAAAACTC-AAAAGAAATTATTAA
32586546 TTAAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.21
Consensus pattern (26 bp):
AAGAAAACTCAAAAGAAATTATTAAA
Found at i:32592610 original size:17 final size:18
Alignment explanation
Indices: 32592583--32592619 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
32592573 AATTAAAACC
32592583 AAAATTTAAATAATAATT
1 AAAATTTAAATAATAATT
*
32592601 AAAA-TTAAATATTAATT
1 AAAATTTAAATAATAATT
32592618 AA
1 AA
32592620 CACATATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTAAATAATAATT
Found at i:32599051 original size:21 final size:23
Alignment explanation
Indices: 32599027--32599068 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
32599017 ATATTTTAAG
*
32599027 GTGTAATGAT-GATGG-TTAAAA
1 GTGTAAAGATGGATGGCTTAAAA
32599048 GTGTAAAGATGGATGGCTTAA
1 GTGTAAAGATGGATGGCTTAA
32599069 GGACTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.36, C:0.02, G:0.31, T:0.31
Consensus pattern (23 bp):
GTGTAAAGATGGATGGCTTAAAA
Found at i:32600113 original size:27 final size:27
Alignment explanation
Indices: 32600083--32600187 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
32600073 AATTAGCACA
32600083 CTTATCATATTATTTTGCACTTTGGTG
1 CTTATCATATTATTTTGCACTTTGGTG
* *
32600110 CTTATCGT-TGTAAAAATTTGCACTTTGGT-
1 CTTATCATAT-T---ATTTTGCACTTTGGTG
*
32600139 CTTATCATTATTATTTTGCACTTCGGTG
1 CTTATCA-TATTATTTTGCACTTTGGTG
32600167 CTTATC--ATTA-TTTGCACTTTG
1 CTTATCATATTATTTTGCACTTTG
32600188 TGAATAGTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
24 10 0.15
25 4 0.06
26 1 0.02
27 21 0.32
28 6 0.09
29 6 0.09
30 16 0.25
31 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (27 bp):
CTTATCATATTATTTTGCACTTTGGTG
Found at i:32600183 original size:51 final size:53
Alignment explanation
Indices: 32600083--32600187 Score: 135
Period size: 57 Copynumber: 2.0 Consensus size: 53
32600073 AATTAGCACA
* *
32600083 CTTATCATATTATTTTGCACTTTGGTGCTTATCGTTGTAAAAATTTGCACTTTGGT
1 CTTATCATATTATTTTGCACTTCGGTGCTTATCGATGT---AATTTGCACTTTGGT
32600139 CTTATCATTATTATTTTGCACTTCGGTGCTTATC-AT-T-ATTTGCACTTTG
1 CTTATCA-TATTATTTTGCACTTCGGTGCTTATCGATGTAATTTGCACTTTG
32600188 TGAATAGTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
51 12 0.26
55 1 0.02
56 8 0.17
57 25 0.54
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (53 bp):
CTTATCATATTATTTTGCACTTCGGTGCTTATCGATGTAATTTGCACTTTGGT
Found at i:32611330 original size:11 final size:11
Alignment explanation
Indices: 32611314--32611338 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32611304 TTAAATTTAG
32611314 AAATAAAATAA
1 AAATAAAATAA
32611325 AAATAAAATAA
1 AAATAAAATAA
32611336 AAA
1 AAA
32611339 CCAAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:32624139 original size:48 final size:47
Alignment explanation
Indices: 32624068--32624197 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 47
32624058 TAGGGGATAC
* * *
32624068 ATTGATTTGACTTCGAGCCATGATATCAGCACTTCGGGTGCGAGCTTT
1 ATTGATTTGACTTAGGGCCATGATAT-AGCACTTCGGGTGCGACCTTT
*
32624116 ATTGATTTGACTTAGGGCCATGATATTGACACTTCGGGTGCGACCTTT
1 ATTGATTTGACTTAGGGCCATGATATAG-CACTTCGGGTGCGACCTTT
* *
32624164 ATTGATTTGGCTTTGGGCCATGATATTAGCACTT
1 ATTGATTTGACTTAGGGCCATGATA-TAGCACTT
32624198 AGTGTACGAG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 1 0.01
48 70 0.96
49 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (47 bp):
ATTGATTTGACTTAGGGCCATGATATAGCACTTCGGGTGCGACCTTT
Found at i:32629950 original size:42 final size:43
Alignment explanation
Indices: 32629835--32629993 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
32629825 TGTGTTATCG
* * * *
32629835 TGTAAGACCACGTCT-GTGACGTTGGCATTGACT-TATGACTTACG
1 TGTAAGACCATGTCTAG-GACGTTGACATTGA-TATCTGA-TTACA
* * *
32629879 TGTAAGACCATGTCTGGGACGTTGGCATTG-TATCTGATTTCA
1 TGTAAGACCATGTCTAGGACGTTGACATTGATATCTGATTACA
* *
32629921 TGTAAGACCCTGTCTAGGACAG-TGACATTGATATTTGATTACA
1 TGTAAGACCATGTCTAGGAC-GTTGACATTGATATCTGATTACA
* * *
32629964 TGTAAGACCACGTCTGGGACGTTGGCATTG
1 TGTAAGACCATGTCTAGGACGTTGACATTG
32629994 TATGGTCTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 27 0.28
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACGTTGACATTGATATCTGATTACA
Found at i:32643186 original size:26 final size:26
Alignment explanation
Indices: 32643150--32643242 Score: 141
Period size: 26 Copynumber: 3.6 Consensus size: 26
32643140 CGTCAGAAAA
32643150 TGGAAGCCTTTGTGGCGTATCTGAAG
1 TGGAAGCCTTTGTGGCGTATCTGAAG
*
32643176 TGGAAGCCTTTGTGGTGTATCTGAAG
1 TGGAAGCCTTTGTGGCGTATCTGAAG
* * *
32643202 TGGAAGCTTTTGTGGCGTAACTGAAA
1 TGGAAGCCTTTGTGGCGTATCTGAAG
*
32643228 TGGAAGCCTTCGTGG
1 TGGAAGCCTTTGTGG
32643243 TGATCTATGG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.31
Consensus pattern (26 bp):
TGGAAGCCTTTGTGGCGTATCTGAAG
Found at i:32643387 original size:27 final size:27
Alignment explanation
Indices: 32643340--32643398 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
32643330 CCAGAAAGGG
** *
32643340 AAGAATGGTAAATGTGACAAACTCTAA
1 AAGAATGGTAAAAATGACAAACGCTAA
* *
32643367 AAGAATGGTAAAAATGGCAAACGCTGA
1 AAGAATGGTAAAAATGACAAACGCTAA
32643394 AAGAA
1 AAGAA
32643399 CAATCCGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.51, C:0.10, G:0.22, T:0.17
Consensus pattern (27 bp):
AAGAATGGTAAAAATGACAAACGCTAA
Found at i:32644739 original size:70 final size:69
Alignment explanation
Indices: 32644653--32644809 Score: 228
Period size: 70 Copynumber: 2.3 Consensus size: 69
32644643 TCTTCACTAT
* *
32644653 TTAAAAAGTTAATTTTAATCCTACACTGACTAGAAAACACTCTCATAGCTCACTTAT-TCACTAT
1 TTAAAAAGTTAATTTTAATCCTAAACTGACTAGAAAACACTCCCATAGCTCACTT-TCTCACTAT
32644717 TTTTA
65 TTTTA
* * *
32644722 TTAAAAAAGTTAATTTTAATCTTAAATTGACTAGAAAATACTCCCATAGCTCACTTTCTCACTAT
1 TT-AAAAAGTTAATTTTAATCCTAAACTGACTAGAAAACACTCCCATAGCTCACTTTCTCACTAT
*
32644787 TTTAA
65 TTTTA
32644792 TTAAAAA-TTAATTTTAAT
1 TTAAAAAGTTAATTTTAAT
32644810 GTTAATTTTA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
68 11 0.14
69 8 0.10
70 61 0.76
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (69 bp):
TTAAAAAGTTAATTTTAATCCTAAACTGACTAGAAAACACTCCCATAGCTCACTTTCTCACTATT
TTTA
Found at i:32646095 original size:20 final size:20
Alignment explanation
Indices: 32646072--32646125 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
32646062 ACAACTCCAC
*
32646072 TTCTATCCATACATGTTAAG
1 TTCTACCCATACATGTTAAG
* * *
32646092 TTCTACCCATACAAGTTTAT
1 TTCTACCCATACATGTTAAG
32646112 TTCTACCCATACAT
1 TTCTACCCATACAT
32646126 CTTGTAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.39
Consensus pattern (20 bp):
TTCTACCCATACATGTTAAG
Found at i:32652595 original size:27 final size:27
Alignment explanation
Indices: 32652556--32652733 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
32652546 ACATTGAGCC
* * * *
32652556 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
32652583 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
32652610 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
32652638 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32652665 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
32652692 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32652719 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
32652734 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32652695 original size:82 final size:81
Alignment explanation
Indices: 32652577--32652732 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
32652567 TGCTATATAA
* * * **
32652577 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
32652642 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32652659 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
32652723 CCCTTAGTGC
65 CACTTAGTGC
32652733 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32660535 original size:27 final size:27
Alignment explanation
Indices: 32660496--32660673 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
32660486 ACATTGAGCC
* * *
32660496 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
32660523 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
32660550 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAATCA-AAT
** ** *
32660578 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
32660605 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* * *
32660632 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
32660659 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
32660674 GTATAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:32660635 original size:82 final size:81
Alignment explanation
Indices: 32660517--32660672 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
32660507 TGCTATATAA
* * * **
32660517 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
32660582 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32660599 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
32660663 CCCTTAGTGC
65 CACTTAGTGC
32660673 TGTATAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32663675 original size:24 final size:24
Alignment explanation
Indices: 32663643--32663692 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
32663633 TAGGCCGTGT
32663643 CCTCCACACGGTTGAGACACACGG
1 CCTCCACACGGTTGAGACACACGG
*
32663667 CCTCTACACGGTTGAGACACACGG
1 CCTCCACACGGTTGAGACACACGG
32663691 CC
1 CC
32663693 GTGCCTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (24 bp):
CCTCCACACGGTTGAGACACACGG
Found at i:32682465 original size:26 final size:26
Alignment explanation
Indices: 32682424--32682501 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
32682414 ATTAATAAGA
*
32682424 TATGATTA-GCACTTCGGTGCGATAT
1 TATGATTATGCACTTCGGTGCAATAT
32682449 TATGATTATGCACTTCGGTGCAATAT
1 TATGATTATGCACTTCGGTGCAATAT
* * * *
32682475 TGTGATTATGCATTTCAGTGCATTAT
1 TATGATTATGCACTTCGGTGCAATAT
32682501 T
1 T
32682502 GTTAATTTTC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.17
26 39 0.83
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (26 bp):
TATGATTATGCACTTCGGTGCAATAT
Found at i:32699873 original size:42 final size:42
Alignment explanation
Indices: 32699827--32699917 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
32699817 TGATTTTGTA
* *
32699827 TAAGACCATTTATGGGACACGGCATCGATA-AGAGACATCATG
1 TAAGACCATGTATGGGACACGGCATCGATATA-AAACATCATG
* * * *
32699869 TAAGACCATGTCTGGTACATGGCATCGATATAAAACATCGTG
1 TAAGACCATGTATGGGACACGGCATCGATATAAAACATCATG
32699911 TAAGACC
1 TAAGACC
32699918 GTAGCTGGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (42 bp):
TAAGACCATGTATGGGACACGGCATCGATATAAAACATCATG
Found at i:32703113 original size:42 final size:42
Alignment explanation
Indices: 32703066--32703183 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
32703056 TGTACCAATG
* * *
32703066 CCATATCCCAGATATGGTATTACATGTAATCTCATATTGATGT
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATAGAT-T
*
32703109 -CATATCCCAGATATGGTCTTACACGTAGTCTCATATAGATT
1 CCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATT
32703150 CCATATCCCAGATATGGTCTTACACGTAATCTCA
1 CCATATCCCAGATATGGTCTTACACGTAATCTCA
32703184 GTAACCCTAA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.01
42 68 0.99
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATT
Found at i:32704976 original size:13 final size:13
Alignment explanation
Indices: 32704958--32704986 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32704948 TAATCTGTTA
32704958 TTTTTGTATCTAT
1 TTTTTGTATCTAT
32704971 TTTTTGTATCTAT
1 TTTTTGTATCTAT
32704984 TTT
1 TTT
32704987 GGGGTGGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (13 bp):
TTTTTGTATCTAT
Found at i:32716251 original size:34 final size:34
Alignment explanation
Indices: 32716213--32716280 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
32716203 TATTAAATTA
32716213 ATGAATGGACTAAAATTGTAAATATGTGAAAAGT
1 ATGAATGGACTAAAATTGTAAATATGTGAAAAGT
32716247 ATGAATGGACTAAAATTGTAAATATGTGAAAAGT
1 ATGAATGGACTAAAATTGTAAATATGTGAAAAGT
32716281 TTTGTGGCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.21, T:0.29
Consensus pattern (34 bp):
ATGAATGGACTAAAATTGTAAATATGTGAAAAGT
Found at i:32719260 original size:24 final size:24
Alignment explanation
Indices: 32719225--32719332 Score: 93
Period size: 24 Copynumber: 4.7 Consensus size: 24
32719215 GTGAATGTTC
*
32719225 AACCTTTTACCTTTCATTTTCCTT
1 AACCTTTCACCTTTCATTTTCCTT
*
32719249 AACCTTCCACCTTTCA---T-CTT
1 AACCTTTCACCTTTCATTTTCCTT
* * *
32719269 -ACCTTTCATCTTTCATCTTCTTT
1 AACCTTTCACCTTTCATTTTCCTT
* * *
32719292 AACTTTTCACATTTCATTTTCTTT
1 AACCTTTCACCTTTCATTTTCCTT
32719316 AA-CTCTTCACCTTTCAT
1 AACCT-TTCACCTTTCAT
32719333 GTCTTTGTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
19 13 0.19
20 3 0.04
21 1 0.01
22 1 0.01
23 3 0.04
24 46 0.69
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.51
Consensus pattern (24 bp):
AACCTTTCACCTTTCATTTTCCTT
Found at i:32719281 original size:19 final size:19
Alignment explanation
Indices: 32719231--32719287 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
32719221 GTTCAACCTT
32719231 TTACCTTTCAT-TTTC--C
1 TTACCTTTCATCTTTCATC
* *
32719247 TTAACCTTCCACCTTTCATC
1 TT-ACCTTTCATCTTTCATC
32719267 TTACCTTTCATCTTTCATC
1 TTACCTTTCATCTTTCATC
32719286 TT
1 TT
32719288 CTTTAACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 4 0.12
19 17 0.52
20 3 0.09
ACGTcount: A:0.16, C:0.33, G:0.00, T:0.51
Consensus pattern (19 bp):
TTACCTTTCATCTTTCATC
Found at i:32719294 original size:43 final size:43
Alignment explanation
Indices: 32719226--32719308 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
32719216 TGAATGTTCA
* * *
32719226 ACCTTTTACCTTTCATTTTCCTTAACCTTCCACCTTTCATCTT
1 ACCTTTCACCTTTCATCTTCCTTAACCTTCCACATTTCATCTT
* * * *
32719269 ACCTTTCATCTTTCATCTTCTTTAACTTTTCACATTTCAT
1 ACCTTTCACCTTTCATCTTCCTTAACCTTCCACATTTCAT
32719309 TTTCTTTAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.18, C:0.31, G:0.00, T:0.51
Consensus pattern (43 bp):
ACCTTTCACCTTTCATCTTCCTTAACCTTCCACATTTCATCTT
Found at i:32724898 original size:45 final size:45
Alignment explanation
Indices: 32724751--32724993 Score: 198
Period size: 45 Copynumber: 5.4 Consensus size: 45
32724741 CCTGCATTAG
* * * * * * *
32724751 GGAAACATCTTGTTTCCTCTGTCCATATCCTGTTGCTAGCATCAA
1 GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
* * * * *
32724796 GGAAACTTCGTATTTCCTATATCTATATCCTGTTGCTAGCATCAA
1 GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
* * *
32724841 CGAAACTTCTTGTTTCCTATATCTACATCCTGTTTATGGCACCAA
1 GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
* * * * * * * * *
32724886 GGAAACTCCTTGTTCCCTGTATCCATAGCATGTTTCCGGCTCCAT
1 GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
* * * * ** *
32724931 GGAAACTTCTTGTTTCCTTTATCCATAGCCTGTTTCCGGCTTCAT
1 GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
*
32724976 GGAAACTTCTCGTTTCCT
1 GGAAACTTCTTGTTTCCT
32724994 GCACCTGTAG
Statistics
Matches: 166, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 166 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (45 bp):
GGAAACTTCTTGTTTCCTATATCTATATCCTGTTTCTGGCACCAA
Found at i:32726583 original size:8 final size:8
Alignment explanation
Indices: 32726570--32726599 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
32726560 AGTCTTATTC
32726570 AAAAAAAG
1 AAAAAAAG
32726578 AAAAAAAG
1 AAAAAAAG
32726586 -AAAAAAG
1 AAAAAAAG
32726593 AAAAAAA
1 AAAAAAA
32726600 AAAGGAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:32726591 original size:15 final size:15
Alignment explanation
Indices: 32726571--32726599 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32726561 GTCTTATTCA
32726571 AAAAAAGAAAAAAAG
1 AAAAAAGAAAAAAAG
32726586 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
32726600 AAAGGAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAG
Found at i:32728963 original size:41 final size:42
Alignment explanation
Indices: 32728918--32729009 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
32728908 ACGACCAAAG
32728918 CACATGCCCATGGGACA-GCCGTGTGTCAGACACGGCCTAGA
1 CACATGCCCATGGGACAGGCCGTGTGTCAGACACGGCCTAGA
*
32728959 CACATGCCCATGGGACAGGCCGTGTGTCAGACATGGCCTAGA
1 CACATGCCCATGGGACAGGCCGTGTGTCAGACACGGCCTAGA
32729001 CACATGCCC
1 CACATGCCC
32729010 GTGTGTCTAC
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 17 0.35
42 32 0.65
ACGTcount: A:0.24, C:0.33, G:0.28, T:0.15
Consensus pattern (42 bp):
CACATGCCCATGGGACAGGCCGTGTGTCAGACACGGCCTAGA
Found at i:32738958 original size:36 final size:36
Alignment explanation
Indices: 32738901--32738990 Score: 135
Period size: 36 Copynumber: 2.5 Consensus size: 36
32738891 ACATCAATAT
* *
32738901 TCCAACCAAAACACACCAGATGCTCATAAGAGTTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
* * *
32738937 TCCATCCGAAACACACTAGATGTTCATAAGAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
32738973 TCCATCCAAAACACACCA
1 TCCATCCAAAACACACCA
32738991 ATGGCTTCGA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.42, C:0.30, G:0.10, T:0.18
Consensus pattern (36 bp):
TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
Found at i:32760341 original size:14 final size:14
Alignment explanation
Indices: 32760322--32760349 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32760312 ATTGTGTTAG
32760322 GTTTCAGTTCAAAA
1 GTTTCAGTTCAAAA
32760336 GTTTCAGTTCAAAA
1 GTTTCAGTTCAAAA
32760350 TTATTTGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GTTTCAGTTCAAAA
Found at i:32764585 original size:21 final size:21
Alignment explanation
Indices: 32764561--32764604 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
32764551 TGGGGTCGAA
*
32764561 GAGGCTATGTGGGAACCTGAG
1 GAGGCTAAGTGGGAACCTGAG
*
32764582 GAGGCTAAGTGGGAACTTGAG
1 GAGGCTAAGTGGGAACCTGAG
32764603 GA
1 GA
32764605 AGTTATGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.43, T:0.18
Consensus pattern (21 bp):
GAGGCTAAGTGGGAACCTGAG
Found at i:32766637 original size:14 final size:15
Alignment explanation
Indices: 32766609--32766639 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
32766599 TGAATGATGA
32766609 GTTGATGTCTTGGTT
1 GTTGATGTCTTGGTT
32766624 GTTGATGT-TTGGTT
1 GTTGATGTCTTGGTT
32766638 GT
1 GT
32766640 ATGTATATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.06, C:0.03, G:0.35, T:0.55
Consensus pattern (15 bp):
GTTGATGTCTTGGTT
Found at i:32770044 original size:36 final size:36
Alignment explanation
Indices: 32769941--32770052 Score: 118
Period size: 36 Copynumber: 3.1 Consensus size: 36
32769931 ACATCAATAT
* *
32769941 TCCAACCAAAACACACCATATGCTCATAAGAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
* * ** *
32769977 TCCATCTAAAGCACATTAGATGTTCATAAGAGCTAA
1 TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
** *
32770013 TCCATCCAAAACACACCA-ATGGCTCCGAAGAGCTAG
1 TCCATCCAAAACACACCAGAT-GCTCATAAGAGCTAA
32770049 TCCA
1 TCCA
32770053 ACCGAGACAC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 2 0.03
36 58 0.97
ACGTcount: A:0.39, C:0.29, G:0.12, T:0.20
Consensus pattern (36 bp):
TCCATCCAAAACACACCAGATGCTCATAAGAGCTAA
Found at i:32780010 original size:79 final size:78
Alignment explanation
Indices: 32779907--32780129 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
32779897 GCTCCTCGTT
* *
32779907 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
32779972 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
32779987 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
32780050 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
32780065 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
32780128 GA
63 GA
32780130 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:32780024 original size:39 final size:40
Alignment explanation
Indices: 32779907--32780129 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
32779897 GCTCCTCGTT
* *
32779907 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
32779947 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32779987 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
32780026 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
32780065 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
32780106 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32780130 CAGCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:32788002 original size:39 final size:40
Alignment explanation
Indices: 32787885--32788068 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
32787875 GCTCCTCGTT
*
32787885 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
32787925 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
32787965 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
32788004 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
*
32788045 C-AA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32788069 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.02
39 49 0.39
40 64 0.51
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:32788029 original size:79 final size:82
Alignment explanation
Indices: 32787885--32788068 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 82
32787875 GCTCCTCGTT
* *
32787885 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
32787949 GAT-TTAGTAAC-TCGCA
66 GATATT-GTAACTTAGCA
**
32787965 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
32788026 CGGATATTGTCACTTAGCA
64 CGGATATTGTAACTTAGCA
*
32788045 C-AA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32788069 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTAACTTAGCA
Found at i:32790045 original size:48 final size:46
Alignment explanation
Indices: 32789925--32790054 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 46
32789915 TTCAATCGAT
* *
32789925 AAATACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCT
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCG
* * *
32789971 AGAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCCG
1 A-AATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT--TATCCG
32790020 AAATACCTATACCATGGCCCGTAGCCAAATCAAGG
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGG
32790055 CATCACTCAC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.01
47 36 0.49
48 32 0.43
49 5 0.07
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (46 bp):
AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCG
Found at i:32792445 original size:40 final size:40
Alignment explanation
Indices: 32792383--32792597 Score: 321
Period size: 40 Copynumber: 5.4 Consensus size: 40
32792373 AAACCAAGTA
* * *
32792383 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
32792422 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32792462 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32792502 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
32792542 CCTTCGGGACTTAGCCAGAAT-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32792581 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
32792598 CGTTATCATC
Statistics
Matches: 162, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 48 0.30
40 114 0.70
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32805307 original size:33 final size:33
Alignment explanation
Indices: 32805265--32805332 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
32805255 GTGGTGCTTG
32805265 TGAGTAGTTGATTGGTCGTGTTACATGATGACA
1 TGAGTAGTTGATTGGTCGTGTTACATGATGACA
32805298 TGAGTAGTTGATTGGTCGTGTTACATGATGACA
1 TGAGTAGTTGATTGGTCGTGTTACATGATGACA
32805331 TG
1 TG
32805333 TTTGCGTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.24, C:0.09, G:0.31, T:0.37
Consensus pattern (33 bp):
TGAGTAGTTGATTGGTCGTGTTACATGATGACA
Found at i:32820161 original size:36 final size:36
Alignment explanation
Indices: 32820114--32820182 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
32820104 ATACACTATT
32820114 AGAGTATTTGATGAACTTTCTTACACACCGGTAATC
1 AGAGTATTTGATGAACTTTCTTACACACCGGTAATC
*
32820150 AGAGTATTTGATGAACTTTCTTGCACACCGGTA
1 AGAGTATTTGATGAACTTTCTTACACACCGGTA
32820183 GAGTGTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (36 bp):
AGAGTATTTGATGAACTTTCTTACACACCGGTAATC
Found at i:32823719 original size:30 final size:30
Alignment explanation
Indices: 32823683--32823741 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
32823673 TCTGAGAGAG
32823683 TAATTCAGATTCTCGAAGATGTGCTTCGTC
1 TAATTCAGATTCTCGAAGATGTGCTTCGTC
32823713 TAATTCAGATTCTCGAAGATGTGCTTCGT
1 TAATTCAGATTCTCGAAGATGTGCTTCGT
32823742 TTTTGTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (30 bp):
TAATTCAGATTCTCGAAGATGTGCTTCGTC
Found at i:32828087 original size:43 final size:42
Alignment explanation
Indices: 32828000--32828157 Score: 104
Period size: 43 Copynumber: 3.7 Consensus size: 42
32827990 AGCTCTTAAA
* **** * *
32828000 ATGCCATATCCTAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATAGCCTAGATATGGTCTTACACAAAATCAAATAACG
*
32828042 ATGCCGATAGCCTAGCTATGGTCTTACACAAAATCAAATAACG
1 ATGCC-ATAGCCTAGATATGGTCTTACACAAAATCAAATAACG
* * * * * * *
32828085 ATGCCA-ATGTCCCAGACATGGTTTTACACATAGTCACATAATG
1 ATGCCATA-G-CCTAGATATGGTCTTACACAAAATCAAATAACG
* *
32828128 ATGCCA-ATGTCCCAGACATGGTCTTACACA
1 ATGCCATA-G-CCTAGATATGGTCTTACACA
32828158 TATTCACATC
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 88 0.92
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCTAGATATGGTCTTACACAAAATCAAATAACG
Found at i:32828158 original size:43 final size:43
Alignment explanation
Indices: 32828016--32828166 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
32828006 TATCCTAGAT
** * * * *
32828016 ATGGTCTTACATGTTATCACATATCGATGCCGATAG-CCTAG-C
1 ATGGTCTTACACATAATCACATAACGATGCCAAT-GTCCCAGAC
* *
32828058 TATGGTCTTACACAAAATCAAATAACGATGCCAATGTCCCAGAC
1 -ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
* * *
32828102 ATGGTTTTACACATAGTCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
*
32828145 ATGGTCTTACACATATTCACAT
1 ATGGTCTTACACATAATCACAT
32828167 CTCGTTAATC
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 89 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Done.