Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 102 of 320
Found at i:32831261 original size:18 final size:20
Alignment explanation
Indices: 32831233--32831269 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
32831223 ATCCCTTTAC
32831233 TTTTAGAAATTTA-TAAAAT
1 TTTTAGAAATTTATTAAAAT
32831252 TTTTAG-AATTTATTAAAA
1 TTTTAGAAATTTATTAAAA
32831270 ATTTATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTTTAGAAATTTATTAAAAT
Found at i:32831274 original size:18 final size:19
Alignment explanation
Indices: 32831234--32831274 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
32831224 TCCCTTTACT
*
32831234 TTTAGAAATTTATAAAATT
1 TTTAGAAATTTATAAAATA
32831253 TTTAG-AATTTATTAAAA-A
1 TTTAGAAATTTA-TAAAATA
32831271 TTTA
1 TTTA
32831275 TTATATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTAGAAATTTATAAAATA
Found at i:32832399 original size:16 final size:16
Alignment explanation
Indices: 32832378--32832409 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32832368 CTTTCCATTC
32832378 CCATTTTTGCTTTATA
1 CCATTTTTGCTTTATA
32832394 CCATTTTTGCTTTATA
1 CCATTTTTGCTTTATA
32832410 TCTTATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
CCATTTTTGCTTTATA
Found at i:32840989 original size:38 final size:38
Alignment explanation
Indices: 32840933--32841012 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
32840923 GATGTGTATT
* * *
32840933 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
32840971 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
32841009 CGGG
1 CGGG
32841013 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:32841059 original size:43 final size:43
Alignment explanation
Indices: 32840984--32841202 Score: 361
Period size: 43 Copynumber: 5.1 Consensus size: 43
32840974 GATAAATCCC
* * *
32840984 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32841025 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32841068 GCAGGCTTAGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32841111 GCAGGCTTGGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32841154 GCAGGCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32841197 GCAGGC
1 GCAGGC
32841203 GTAATGCCTG
Statistics
Matches: 168, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
43 151 0.90
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:32842607 original size:40 final size:41
Alignment explanation
Indices: 32842557--32842766 Score: 277
Period size: 40 Copynumber: 5.2 Consensus size: 41
32842547 CACAAGGTCG
* * * * *
32842557 TCGGGTCTTAGCCCGGATA-TGGTCACTAGCGCAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
32842597 TCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
*
32842637 TCGGGACTTAGCCC-GAAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
32842677 TCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
* * * * *
32842717 TCGGGACTTAGCCCGGA-ATTAATCACTAGCACCAATGTCT
1 TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
*
32842757 TTGGGACTTA
1 TCGGGACTTA
32842767 ACCCCGTTAG
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 151 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
TCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATGCCT
Found at i:32844749 original size:38 final size:38
Alignment explanation
Indices: 32844693--32844772 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
32844683 GATGTGTATT
* * *
32844693 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
32844731 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
32844769 CGGG
1 CGGG
32844773 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:32844819 original size:43 final size:43
Alignment explanation
Indices: 32844744--32844962 Score: 334
Period size: 43 Copynumber: 5.1 Consensus size: 43
32844734 GATAAATCCC
* * *
32844744 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32844785 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCTTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
32844828 GCAGGCTTAGTGCCGATGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
32844871 GCAGGCTTGGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * *
32844914 GCAGGCTTCGTGTCGGTGATGTGTATTTGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
32844957 GCAGGC
1 GCAGGC
32844963 GTAATGCCTG
Statistics
Matches: 163, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
43 146 0.90
ACGTcount: A:0.12, C:0.23, G:0.34, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:32846017 original size:79 final size:80
Alignment explanation
Indices: 32845867--32846085 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 80
32845857 GATGTCCGGG
* * * * *
32845867 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
1 CTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGC
32845930 GAGATACTAAATCCAGA
64 GAGATACTAAATCCAGA
*
32845947 CTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTG
1 CTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTG
* ** *
32846008 CGAGTTACTAAATCTGGG
63 CGAGATACTAAATCCAGA
* * *
32846026 TTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGTTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
32846086 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
78 2 0.02
79 65 0.55
80 41 0.35
81 9 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
CTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
GATACTAAATCCAGA
Found at i:32846049 original size:40 final size:40
Alignment explanation
Indices: 32845861--32846085 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
32845851 TTGAATGATG
* * *
32845861 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
32845901 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
32845941 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
32845981 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
32846020 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
* *
32846061 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32846086 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 116 0.71
41 12 0.07
42 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:32846099 original size:40 final size:40
Alignment explanation
Indices: 32846023--32846118 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 40
32846013 TACTAAATCT
** **
32846023 GGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACC
1 GGGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAACC
* *
32846063 GGGTTATGTCCCGAAGGCATTTGAACG-AGGAGCTATATCC
1 GGGTTAAGTCCCGAAGGCATTTGAACGAAGGA-CTATAACC
* *
32846103 -GGTTAAATTCCGAAGG
1 GGGTTAAGTCCCGAAGG
32846119 TACGTGATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
39 15 0.33
40 31 0.67
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGAACGAAGGACTATAACC
Found at i:32846107 original size:79 final size:79
Alignment explanation
Indices: 32845954--32846118 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
32845944 AGACTAAGAT
* ** *
32845954 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
32846019 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
32846033 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGTTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
32846095 CTATATC-CGGTTAAATT
62 CTAAATCTCGGTTAAATC
32846112 CCGAAGG
1 CCGAAGG
32846119 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 24 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCTCGGTTAAATC
Found at i:32853928 original size:79 final size:78
Alignment explanation
Indices: 32853801--32853970 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
32853791 GGACTAAGAT
32853801 CCGAAGGCATTTGTGCGAGATACTAATCCAGACTAAGATCCGAAGGCATTTGTGCGAGA-TACTA
1 CCGAAGGCATTTGTGCGAGATACTAATCCAGACTAAGATCCGAAGGCATTTGTGCGA-ATTACTA
*
32853865 -ATTCCGGGCTAAG-C
65 TA-ACCGGG-TAAGTC
* * **
32853879 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAATTACT
1 CCGAAGGCATTTGTGCGAGATACT-AATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAATTACT
*
32853943 ATAACCGGGTATGTC
64 ATAACCGGGTAAGTC
32853958 CCGAAGGCATTTG
1 CCGAAGGCATTTG
32853971 AACGAGGAGC
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
78 28 0.35
79 52 0.64
80 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATCCAGACTAAGATCCGAAGGCATTTGTGCGAATTACTAT
AACCGGGTAAGTC
Found at i:32853970 original size:39 final size:39
Alignment explanation
Indices: 32853750--32853970 Score: 197
Period size: 39 Copynumber: 5.6 Consensus size: 39
32853740 TGAATGATGT
* * * *
32853750 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTA-AA
* *
32853789 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAAA
* * *
32853828 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTAA-A
*
32853868 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
*
32853906 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AA
*
32853947 CCGGG-TATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32853971 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 12, Indels: 20
0.83 0.06 0.10
Matches are distributed among these distances:
39 107 0.67
40 43 0.27
41 9 0.06
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:32853988 original size:79 final size:78
Alignment explanation
Indices: 32853840--32854003 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
32853830 AGACTAAGAT
* ** *
32853840 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
32853905 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
*
32853919 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGG-TATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
32853980 CTATATCCGGTTAAATT
62 CTAAATCCGGTTAAATC
32853997 CCGAAGG
1 CCGAAGG
32854004 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
78 21 0.29
79 52 0.71
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:32860570 original size:13 final size:13
Alignment explanation
Indices: 32860552--32860576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32860542 CCGAAACTAG
32860552 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
32860565 AAAGAAAAAAAA
1 AAAGAAAAAAAA
32860577 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:32861816 original size:79 final size:80
Alignment explanation
Indices: 32861656--32861880 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 80
32861646 TTGAATGATG
* * * * * *
32861656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
32861719 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
32861736 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
32861797 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
32861815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
32861880 G
66 G
32861881 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
78 2 0.02
79 68 0.54
80 46 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:32861844 original size:40 final size:40
Alignment explanation
Indices: 32861656--32861880 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
32861646 TTGAATGATG
* * * *
32861656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32861696 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
32861736 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
32861776 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32861815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32861856 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32861881 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32861872 original size:119 final size:120
Alignment explanation
Indices: 32861656--32861880 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
32861646 TTGAATGATG
*
32861656 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
32861721 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
32861776 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
32861838 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
32861881 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 3 0.03
119 69 0.75
120 20 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32861902 original size:79 final size:78
Alignment explanation
Indices: 32861663--32861913 Score: 244
Period size: 79 Copynumber: 3.2 Consensus size: 78
32861653 ATGTCCGGGC
* * * *
32861663 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
32861726 AGATACTAAATCCGGAC
64 AG-GACTAAATCCGG-T
32861743 TAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 TAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
32861804 GAGTTACTAAATCCGGGT
63 GAG-GACTAAATCC-GGT
* * **
32861822 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
32861887 GAGCTATATCCGGT
66 GA-CTAAATCCGGT
* *
32861901 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
32861914 TACGTGATTT
Statistics
Matches: 146, Mismatches: 14, Indels: 23
0.80 0.08 0.13
Matches are distributed among these distances:
78 2 0.01
79 81 0.55
80 53 0.36
81 9 0.06
82 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
GACTAAATCCGGT
Found at i:32863280 original size:43 final size:43
Alignment explanation
Indices: 32863232--32863325 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
32863222 GGGTGTTACA
** *
32863232 TAGCAGGCTTGGTGCCGGTGATGTGTATTCGGGCCTTCGTGCC
1 TAGCAGGCTTCATACCGGTGATGTGTATTCGGGCCTTCGTGCC
*
32863275 TAGCAGGCTTCATACCGGTGATGTGTATTCGGGCCTTTGTGCC
1 TAGCAGGCTTCATACCGGTGATGTGTATTCGGGCCTTCGTGCC
32863318 TAGCAGGC
1 TAGCAGGC
32863326 GTAATGCCGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
TAGCAGGCTTCATACCGGTGATGTGTATTCGGGCCTTCGTGCC
Found at i:32863336 original size:43 final size:43
Alignment explanation
Indices: 32863244--32863338 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 43
32863234 GCAGGCTTGG
* *
32863244 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCA
1 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
* *
32863287 TACCGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCGTAA
1 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
32863330 TGCCGGTGA
1 TGCCGGTGA
32863339 AATGATATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (43 bp):
TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCGTAA
Found at i:32867208 original size:15 final size:14
Alignment explanation
Indices: 32867173--32867211 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
32867163 CCAAACATTC
32867173 AAGAAAAAAAAAGA
1 AAGAAAAAAAAAGA
32867187 AAGAAAAGAAAAAG-
1 AAGAAAA-AAAAAGA
32867201 AAGTAAAAAAA
1 AAG-AAAAAAA
32867212 TTGCAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (14 bp):
AAGAAAAAAAAAGA
Found at i:32867855 original size:22 final size:22
Alignment explanation
Indices: 32867823--32867865 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32867813 GACACGTGAA
32867823 AGATGTCATGGATGCGATCTAC
1 AGATGTCATGGATGCGATCTAC
*
32867845 AGATGTTATGGATGCGATCTA
1 AGATGTCATGGATGCGATCTA
32867866 ACTCTGGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (22 bp):
AGATGTCATGGATGCGATCTAC
Found at i:32874523 original size:48 final size:48
Alignment explanation
Indices: 32874465--32874792 Score: 550
Period size: 48 Copynumber: 6.9 Consensus size: 48
32874455 ATATACACAC
* * *
32874465 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32874513 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
32874561 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
32874609 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
32874657 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32874705 ATCTCATACATGTTTCACACT-GCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
32874752 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
32874793 CACATATATA
Statistics
Matches: 265, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 47 0.18
48 218 0.82
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:32879056 original size:131 final size:131
Alignment explanation
Indices: 32878876--32879304 Score: 653
Period size: 131 Copynumber: 3.3 Consensus size: 131
32878866 CAAATTAATA
* * * * * * *
32878876 AACTTAAGCTGTGATCGTAAATCAATGAGCCTTAGTAATATCAGTTGTGATCTTAAATCAACGAG
1 AACTTAGGCTATGATTGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAATCAATGAG
*
32878941 CTATTTGGAGTAGCGATAGTAAATCAACTAACTTAGAGAAGATTGTTCATGAGAGTAAATCAAAT
66 CTATTTGGAGTAGCGATAGTAAATCAACTAACTTAGAGAAGATTGTTCATGATAGTAAATCAAAT
32879006 G
131 G
*
32879007 AACTTAGGCTATGATAGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAAT-AAGTGA
1 AACTTAGGCTATGATTGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAATCAA-TGA
* * * *
32879071 GCTATTTGGAGCAGCAATAGTAAATCAACTAACTTAGAGAAAATTGTTCATGATAGTAACTCAAA
65 GCTATTTGGAGTAGCGATAGTAAATCAACTAACTTAGAGAAGATTGTTCATGATAGTAAATCAAA
32879136 TG
130 TG
* *
32879138 AACTTAGGTTATGATTGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAATCATTGAG
1 AACTTAGGCTATGATTGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAATCAATGAG
* * * *
32879203 ATGTTTGGAGTAGCGATAGTAAATCAACTAACTCAGAAAAGATTGTTCATGATAGTAAATCAAAT
66 CTATTTGGAGTAGCGATAGTAAATCAACTAACTTAGAGAAGATTGTTCATGATAGTAAATCAAAT
32879268 G
131 G
* *
32879269 AACTTAGGCTGTGATTGTAAATCACCGAGCCTTAAT
1 AACTTAGGCTATGATTGTAAATCAACGAGCCTTAAT
32879305 TGTAACAACC
Statistics
Matches: 270, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
130 2 0.01
131 267 0.99
132 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.31
Consensus pattern (131 bp):
AACTTAGGCTATGATTGTAAATCAACGAGCCTTAATAATATTAGTTGTGATCTTAAATCAATGAG
CTATTTGGAGTAGCGATAGTAAATCAACTAACTTAGAGAAGATTGTTCATGATAGTAAATCAAAT
G
Found at i:32882002 original size:54 final size:54
Alignment explanation
Indices: 32881906--32882036 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
32881896 GATCGTGAGC
* * * *
32881906 TACATGGTCACAGTGAGTTACATAGCCTAGCCAAACGGCCATGTAACCTTATTT
1 TACATGGGCACAGTTAGTTACACAGCCTAGCCAAACGACCATGTAACCTTATTT
* * *
32881960 TACATGGGCACAGTTAGTTACACAGCCTGGCCACACGACCATGTGACCTTATTT
1 TACATGGGCACAGTTAGTTACACAGCCTAGCCAAACGACCATGTAACCTTATTT
* *
32882014 TACACGGGCATAGTTAGTTACAC
1 TACATGGGCACAGTTAGTTACAC
32882037 GGTCTGTGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (54 bp):
TACATGGGCACAGTTAGTTACACAGCCTAGCCAAACGACCATGTAACCTTATTT
Found at i:32885421 original size:43 final size:43
Alignment explanation
Indices: 32885373--32885570 Score: 360
Period size: 43 Copynumber: 4.6 Consensus size: 43
32885363 CCGGCATTAC
32885373 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
32885416 GCCTGCTAGGCACGAAGGCCCGAGTACACATCACCGGAACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
32885459 GCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
32885502 GCCTGCTAGGCACGAAGGCCCTAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
32885545 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
32885571 TAATACCAGC
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 147 1.00
ACGTcount: A:0.30, C:0.33, G:0.26, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:32885666 original size:38 final size:38
Alignment explanation
Indices: 32885563--32885666 Score: 127
Period size: 38 Copynumber: 2.7 Consensus size: 38
32885553 GGCACGAAGG
* * * *
32885563 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
32885601 CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
* **
32885639 CCTGAATATTTTACCAGCACGAAGCCTG
1 CCCGAATATAATACCAGCACGAAGCCTG
32885667 AGGGTCTTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:32892863 original size:35 final size:35
Alignment explanation
Indices: 32892812--32892881 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
32892802 TATCACTGAG
32892812 AAAGAAAGATTCGATCTGAGTTATTATTGATAGAT
1 AAAGAAAGATTCGATCTGAGTTATTATTGATAGAT
*
32892847 AAAGAAAGATTTGATCTGAGTTATTATTGATAGAT
1 AAAGAAAGATTCGATCTGAGTTATTATTGATAGAT
32892882 TAACAAAGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.40, C:0.04, G:0.20, T:0.36
Consensus pattern (35 bp):
AAAGAAAGATTCGATCTGAGTTATTATTGATAGAT
Found at i:32898222 original size:79 final size:79
Alignment explanation
Indices: 32898091--32898250 Score: 311
Period size: 79 Copynumber: 2.0 Consensus size: 79
32898081 TATACACTGC
*
32898091 GTTATCTTTGAATAGGTGATAATAGTTTGGACGAGATAAAGATAATGAGATTGTCTATTATAACG
1 GTTATCTTTGAATAGGTGATAATAGTTTGGACGAGATAAAAATAATGAGATTGTCTATTATAACG
32898156 AACGAACCAGGATG
66 AACGAACCAGGATG
32898170 GTTATCTTTGAATAGGTGATAATAGTTTGGACGAGATAAAAATAATGAGATTGTCTATTATAACG
1 GTTATCTTTGAATAGGTGATAATAGTTTGGACGAGATAAAAATAATGAGATTGTCTATTATAACG
32898235 AACGAACCAGGATG
66 AACGAACCAGGATG
32898249 GT
1 GT
32898251 AGGATGAAAA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.31
Consensus pattern (79 bp):
GTTATCTTTGAATAGGTGATAATAGTTTGGACGAGATAAAAATAATGAGATTGTCTATTATAACG
AACGAACCAGGATG
Found at i:32898653 original size:13 final size:13
Alignment explanation
Indices: 32898635--32898675 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
32898625 TTATATATTC
32898635 AAATTTTACAAAT
1 AAATTTTACAAAT
*
32898648 AAATTTTGA-TAAT
1 AAATTTT-ACAAAT
32898661 AAATTTTACAAAT
1 AAATTTTACAAAT
32898674 AA
1 AA
32898676 TTAATAGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.92
14 1 0.04
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (13 bp):
AAATTTTACAAAT
Found at i:32902704 original size:25 final size:25
Alignment explanation
Indices: 32902670--32902781 Score: 136
Period size: 25 Copynumber: 4.5 Consensus size: 25
32902660 ACCCAAACTT
* *
32902670 GTGAGAGCATACTGATTTACAGCTC
1 GTGAGAGCATACCGATTTATAGCTC
*
32902695 GTGAGAGCATACCGATTTATAGCTT
1 GTGAGAGCATACCGATTTATAGCTC
*
32902720 GTGAGAGCACACCGATTTATAGCTC
1 GTGAGAGCATACCGATTTATAGCTC
* * * *
32902745 GAGTGAGCATATCGATTCATAGCTC
1 GTGAGAGCATACCGATTTATAGCTC
32902770 GT-ATGAGCATAC
1 GTGA-GAGCATAC
32902782 ATATACAGGA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
GTGAGAGCATACCGATTTATAGCTC
Found at i:32905723 original size:6 final size:6
Alignment explanation
Indices: 32905693--32905762 Score: 54
Period size: 6 Copynumber: 11.3 Consensus size: 6
32905683 AAGAAACATT
* * *
32905693 ATCAGA ACCAGA ATCAGGTA A-CAGA ATCAGA ATTAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
32905744 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
32905763 GTGAATGCAA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
5 4 0.08
6 37 0.74
7 6 0.12
8 3 0.06
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32905743 original size:31 final size:31
Alignment explanation
Indices: 32905693--32905762 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
32905683 AAGAAACATT
* *
32905693 ATCAGAACCAGAATCAGGTAACAGAATCAGA
1 ATCAGAATCAGAATCAGGTAACAGAATCAAA
* *
32905724 ATTAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTAACAGAATCAAA
32905755 ATCAGAAT
1 ATCAGAAT
32905763 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTAACAGAATCAAA
Found at i:32905928 original size:27 final size:26
Alignment explanation
Indices: 32905880--32905939 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
32905870 GCGAGGCTGC
*
32905880 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
32905907 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
32905933 AAGATAT
1 CAGATAT
32905940 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32906028 original size:27 final size:26
Alignment explanation
Indices: 32905980--32906031 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32905970 GCGAGGCTGC
*
32905980 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32906006 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
32906032 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32906298 original size:27 final size:27
Alignment explanation
Indices: 32906268--32906866 Score: 644
Period size: 27 Copynumber: 22.2 Consensus size: 27
32906258 AACACCCTAG
** * *
32906268 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
32906295 GGGTAAAAC-GATAATTCTGTAAATCGA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
* * *
32906322 GGGTAAAACAGTAATTTTTTAAATAGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32906349 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906376 CGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32906403 GGGTAAAAC-GATAATTATGTAAATTGA
1 GGGTAAAACAG-TAATTCTGTAAATCGA
* * *
32906430 GGGTAAAACAATAATTTTGTAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32906457 GGGTAAAACGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906484 AGGTAAAACAGTAATTTTCTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
32906511 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906538 GGGTGAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* ** * *
32906565 GGATAAAATGGTAATTATGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * * * *
32906592 GGGTAGAACAATAATTTTATAAATTGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906619 AGGTAAAACAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32906646 TGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
*
32906673 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
** *
32906700 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * **
32906727 GGGTAAAACGGTAATTTTACAAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906754 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906781 GGGTAAAATAATAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* *
32906808 GGGTAAAATAGTAATTCTGTAATTCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
* * *
32906835 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTCTGTAAATCGA
32906862 GGGTA
1 GGGTA
32906867 CTTTCATAAT
Statistics
Matches: 489, Mismatches: 79, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.00
27 486 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTCTGTAAATCGA
Found at i:32906876 original size:27 final size:27
Alignment explanation
Indices: 32906817--32906933 Score: 89
Period size: 27 Copynumber: 4.3 Consensus size: 27
32906807 AGGGTAAAAT
* **
32906817 AGTAATTCTGTAATTCGAGGGTAAAAT-
1 AGTAATTTTGTAATTCGAGGGT-ATTTC
32906844 AGTAATTTTGTAATTCGAGGGTACTTTC
1 AGTAATTTTGTAATTCGAGGGTA-TTTC
** * *
32906872 A-TAATTTTACAAGTCAAGGGTATTTC
1 AGTAATTTTGTAATTCGAGGGTATTTC
*
32906898 AGTAATTTT-TCAA-ACTGAGGGTATTTC
1 AGTAATTTTGT-AATTC-GAGGGTATTTC
*
32906925 GGTAATTTT
1 AGTAATTTT
32906934 ACAAATCAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
26 7 0.09
27 66 0.89
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGTAATTTTGTAATTCGAGGGTATTTC
Found at i:32906902 original size:54 final size:53
Alignment explanation
Indices: 32906844--32907019 Score: 160
Period size: 54 Copynumber: 3.3 Consensus size: 53
32906834 AGGGTAAAAT
* * *
32906844 AGTAATTTTGTAATTCGAGGGTACTTTCATAATTTTACAAGTCAAGGGTATTTC
1 AGTAATTTTGTAA-ACGAGGGTACTTTCGTAATTTTACAAATCAAGGGTATTTC
* *
32906898 AGTAATTTT-TCAAACTGAGGGTA-TTTCGGTAATTTTACAAATCAAGGATATTTG
1 AGTAATTTTGT-AAAC-GAGGGTACTTTC-GTAATTTTACAAATCAAGGGTATTTC
* * * * * * **
32906952 GGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACTACT-GGGGGTATTTC
1 AGTAATTTTGTAAA-CGAGGGTACTTTCGTAATTTTACAAATCAAGGGTATTTC
*
32907005 AGTAATTTGGTAAAC
1 AGTAATTTTGTAAAC
32907020 TAAAGTATTC
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
52 1 0.01
53 24 0.24
54 69 0.70
55 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (53 bp):
AGTAATTTTGTAAACGAGGGTACTTTCGTAATTTTACAAATCAAGGGTATTTC
Found at i:32906938 original size:27 final size:27
Alignment explanation
Indices: 32906888--32907012 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
32906878 TTACAAGTCA
* *
32906888 AGGGTATTTCAGTAATTTTTCAAACTG
1 AGGGTATTTCGGTAATTTTACAAACTG
*
32906915 AGGGTATTTCGGTAATTTTACAAA-TCA
1 AGGGTATTTCGGTAATTTTACAAACT-G
* * * *
32906942 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAACTG
* *
32906969 GGGGTACTTT-GGTAATTTTAC-TACTG
1 AGGGTA-TTTCGGTAATTTTACAAACTG
* *
32906995 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
32907013 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
25 3 0.04
26 17 0.21
27 57 0.71
28 3 0.04
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAACTG
Found at i:32907009 original size:26 final size:26
Alignment explanation
Indices: 32906860--32907012 Score: 103
Period size: 27 Copynumber: 5.7 Consensus size: 26
32906850 TTTGTAATTC
* *
32906860 GAGGGTACTTTC-ATAATTTTACAAGT
1 GAGGGTA-TTTCGGTAATTTTACAACT
* * *
32906886 CAAGGGTATTTCAGTAATTTTTCAAACT
1 -GAGGGTATTTCGGTAATTTTAC-AACT
*
32906914 GAGGGTATTTCGGTAATTTTACAAAT
1 GAGGGTATTTCGGTAATTTTACAACT
* * * * *
32906940 CAAGGATATTTGGGTAATTTTATAAACC
1 -GAGGGTATTTCGGTAATTTTA-CAACT
* *
32906968 GGGGGTACTTT-GGTAATTTTACTACT
1 GAGGGTA-TTTCGGTAATTTTACAACT
* *
32906994 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCGGTAATTT
32907013 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
25 3 0.03
26 23 0.23
27 65 0.66
28 8 0.08
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GAGGGTATTTCGGTAATTTTACAACT
Found at i:32908610 original size:24 final size:23
Alignment explanation
Indices: 32908577--32908643 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 23
32908567 GTAGATTGGC
*
32908577 AAAAGCCGAAAAGCTGAATTACCG
1 AAAAG-CGAAAAGCTGAAATACCG
*
32908601 AAAAGTCGAAAAGCCGAAATACCG
1 AAAAG-CGAAAAGCTGAAATACCG
*
32908625 AAAAGCTGAAGAGCTGAAA
1 AAAAGC-GAAAAGCTGAAA
32908644 GTTTGGCTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 1 0.03
24 36 0.97
ACGTcount: A:0.49, C:0.18, G:0.22, T:0.10
Consensus pattern (23 bp):
AAAAGCGAAAAGCTGAAATACCG
Found at i:32908617 original size:16 final size:16
Alignment explanation
Indices: 32908577--32908643 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
32908567 GTAGATTGGC
32908577 AAAAGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
*
32908593 AATTA-CCGAAAAG-TCG
1 AA-AAGCCGAAAAGCT-G
*
32908609 AAAAGCCGAAATA-CCG
1 AAAAGCCGAAA-AGCTG
* *
32908625 AAAAGCTGAAGAGCTG
1 AAAAGCCGAAAAGCTG
32908641 AAA
1 AAA
32908644 GTTTGGCTGC
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
15 3 0.08
16 34 0.87
17 2 0.05
ACGTcount: A:0.49, C:0.18, G:0.22, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:32908951 original size:29 final size:29
Alignment explanation
Indices: 32908864--32908961 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
32908854 GAATAGAAAG
*
32908864 GTGATTTGGGCCTAATGGG-TCATATGAAT
1 GTGAATTGGGCCTAATGGGCT-ATATGAAT
* *
32908893 ATGAATTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCTATATGAAT
*
32908922 GTGAATTGGGCCTGATGGGCTATATGAAT
1 GTGAATTGGGCCTAATGGGCTATATGAAT
*
32908951 GAG-ATTGGGCC
1 GTGAATTGGGCC
32908962 AAGTAGGCCA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
28 8 0.13
29 53 0.87
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.30
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCTATATGAAT
Found at i:32913791 original size:24 final size:24
Alignment explanation
Indices: 32913762--32913855 Score: 118
Period size: 24 Copynumber: 3.9 Consensus size: 24
32913752 TATTGATATT
*
32913762 CAAATCTGCACATATAGTGCCATA
1 CAAATCTGCACACATAGTGCCATA
** *
32913786 CAAATCCACACACATAGTGCCGTA
1 CAAATCTGCACACATAGTGCCATA
*
32913810 CAAAT-TCGCACACATAGTGCCATT
1 CAAATCT-GCACACATAGTGCCATA
*
32913834 CAAATTTGCACACATAGTGCCA
1 CAAATCTGCACACATAGTGCCA
32913856 AAATCATTTC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 59 0.98
25 1 0.02
ACGTcount: A:0.36, C:0.29, G:0.13, T:0.22
Consensus pattern (24 bp):
CAAATCTGCACACATAGTGCCATA
Found at i:32913816 original size:72 final size:72
Alignment explanation
Indices: 32913722--32913855 Score: 178
Period size: 72 Copynumber: 1.9 Consensus size: 72
32913712 TGTTTACCTG
* ** * * * *
32913722 CACACATAGTGCCTTAGTAATTCACATACATATTGATATTCAAATCTGCACATATAGTGCCATAC
1 CACACATAGTGCCGTACAAATTCACACACATAGTGACATTCAAATCTGCACACATAGTGCCATAC
32913787 AAATCCA
66 AAATCCA
* * *
32913794 CACACATAGTGCCGTACAAATTCGCACACATAGTGCCATTCAAATTTGCACACATAGTGCCA
1 CACACATAGTGCCGTACAAATTCACACACATAGTGACATTCAAATCTGCACACATAGTGCCA
32913856 AAATCATTTC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 52 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (72 bp):
CACACATAGTGCCGTACAAATTCACACACATAGTGACATTCAAATCTGCACACATAGTGCCATAC
AAATCCA
Found at i:32915133 original size:15 final size:14
Alignment explanation
Indices: 32915107--32915142 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
32915097 CCTTTTATTC
*
32915107 TTTTATTCATTCAT
1 TTTTATTAATTCAT
32915121 TTCTTATTAATTCAT
1 TT-TTATTAATTCAT
32915136 TTTTATT
1 TTTTATT
32915143 TGGATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTATTAATTCAT
Found at i:32916603 original size:29 final size:28
Alignment explanation
Indices: 32916570--32916676 Score: 128
Period size: 29 Copynumber: 3.7 Consensus size: 28
32916560 TAAAGGTGTT
*
32916570 TTGGGCCTAATGGGTCATATGAATATGAA
1 TTGGGCC-AATGGGCCATATGAATATGAA
*
32916599 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCC-AATGGGCCATATGAATATGAA
*
32916628 TTGGGCCAGATGGGCTATATG-A-ATGAGA
1 TTGGGCCA-ATGGGCCATATGAATATGA-A
32916656 TTGGGCCAAGTGGGCCATATG
1 TTGGGCCAA-TGGGCCATATG
32916677 CATGTATGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
27 4 0.06
28 21 0.30
29 45 0.64
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (28 bp):
TTGGGCCAATGGGCCATATGAATATGAA
Found at i:32916980 original size:27 final size:26
Alignment explanation
Indices: 32916933--32916987 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
32916923 GAAACCATAT
* ** *
32916933 TAAGGGGAAAATTACTGAAATGCCCC
1 TAAGGGGAAAATGACCAAAATACCCC
32916959 TAAGGGCGAAAATGACCAAAATACCCC
1 TAAGGG-GAAAATGACCAAAATACCCC
32916986 TA
1 TA
32916988 GGTGTTGAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (26 bp):
TAAGGGGAAAATGACCAAAATACCCC
Found at i:32923165 original size:25 final size:25
Alignment explanation
Indices: 32923131--32923243 Score: 117
Period size: 25 Copynumber: 4.6 Consensus size: 25
32923121 TGACCCACAA
*
32923131 CTCGTGAGAGCATACCAATTTATAG
1 CTCGTGAGAGCATACCAATTTACAG
*
32923156 CTCGTGAGAGCATA-TAGATTTACAG
1 CTCGTGAGAGCATACCA-ATTTACAG
32923181 CTCGTGAGAGC-T-CCAATTTACAG
1 CTCGTGAGAGCATACCAATTTACAG
* * * * *
32923204 CTCGAGTGAGCATACCGATTCACAT
1 CTCGTGAGAGCATACCAATTTACAG
32923229 CTCGT-ATGAGCATAC
1 CTCGTGA-GAGCATAC
32923244 ATGTATAGGA
Statistics
Matches: 73, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
23 17 0.23
24 4 0.05
25 52 0.71
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
CTCGTGAGAGCATACCAATTTACAG
Found at i:32923233 original size:48 final size:50
Alignment explanation
Indices: 32923126--32923243 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 50
32923116 CATTTTGACC
* * *
32923126 CACAACTCGTGAGAGCATACCAATTTATAGCTCGTGAGAGCATATAGATT
1 CACAACTCGTGAGAGCATACCAATTTACAGCTCGAGAGAGCATACAGATT
* * * *
32923176 TACAGCTCGTGAGAGC-T-CCAATTTACAGCTCGAGTGAGCATACCGATT
1 CACAACTCGTGAGAGCATACCAATTTACAGCTCGAGAGAGCATACAGATT
*
32923224 CACATCTCGT-ATGAGCATAC
1 CACAACTCGTGA-GAGCATAC
32923244 ATGTATAGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.02
48 38 0.68
49 2 0.04
50 15 0.27
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (50 bp):
CACAACTCGTGAGAGCATACCAATTTACAGCTCGAGAGAGCATACAGATT
Found at i:32937934 original size:28 final size:29
Alignment explanation
Indices: 32937878--32937944 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
32937868 TAAATGGAAA
* *
32937878 TTAGTGTGC-AAAGTATCGAGGATGACAC
1 TTAGTGTGCGAAAGTATCCAGAATGACAC
32937906 TTAGTGTGCGAAAG-ATCCAGAAT-AGCAC
1 TTAGTGTGCGAAAGTATCCAGAATGA-CAC
32937934 TTAGTGTGCGA
1 TTAGTGTGCGA
32937945 GGTATCGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.03
28 30 0.86
29 4 0.11
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
TTAGTGTGCGAAAGTATCCAGAATGACAC
Found at i:32945605 original size:27 final size:27
Alignment explanation
Indices: 32945574--32945751 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
32945564 TAAATTGTAC
32945574 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *** *
32945601 TGCACTAAGTGTACGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32945627 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32945655 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32945683 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
32945710 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32945737 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32945752 GACTCAATAT
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32945742 original size:82 final size:81
Alignment explanation
Indices: 32945571--32945751 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
32945561 GATTAAATTG
* *
32945571 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTACGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAACGAATACGATGCACTAA
32945636 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *** *
32945652 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTACGAAACGAATACGAT-GCACT
**
32945716 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
32945734 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32945752 GACTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTACGAAACGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32947172 original size:48 final size:48
Alignment explanation
Indices: 32947101--32947222 Score: 165
Period size: 48 Copynumber: 2.5 Consensus size: 48
32947091 GGGTGTTACA
* *
32947101 GTAAGACCATGTGTGGGACATGGCATCAACCAC-ATTATAAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCAACCACTA-TATAAGAGCCAGT
* ** **
32947149 GTAAGACCATGTCTGGGACATGGCATCAGCTTCTATATGTGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCAACCACTATATAAGAGCCAGT
32947197 GTAAGACCATGTCTGGGACATGGCAT
1 GTAAGACCATGTCTGGGACATGGCAT
32947223 TAGCAGTTTA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 65 0.98
49 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCAACCACTATATAAGAGCCAGT
Found at i:32948869 original size:24 final size:24
Alignment explanation
Indices: 32948837--32948907 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
32948827 CTGTCAGGAG
32948837 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
32948861 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* **
32948885 AGTATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
32948908 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.35, C:0.01, G:0.37, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:32950365 original size:27 final size:26
Alignment explanation
Indices: 32950325--32950436 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
32950315 AGGAAGCGTC
* *
32950325 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
32950352 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
32950378 ACTGGTGGTTCTGCCACGATTATTTGTAT
1 -CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
32950407 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
32950433 CTGG
1 CTGG
32950437 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.11
27 47 0.66
28 15 0.21
29 1 0.01
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32950429 original size:54 final size:54
Alignment explanation
Indices: 32950325--32950436 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
32950315 AGGAAGCGTC
*
32950325 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTA
1 CTGGTGGCTATGCCACAATTATTTGATCTGGTGACTCTGCCACATATATCTGTA
* * * * *
32950379 CTGGTGGTTCTGCCACGATTATTTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATTTG-ATCTGGTGACTCTGCCACATATATCTGTA
32950433 CTGG
1 CTGG
32950437 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATTTGATCTGGTGACTCTGCCACATATATCTGTA
Found at i:32958079 original size:30 final size:30
Alignment explanation
Indices: 32958045--32958141 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
32958035 TAAACTAAAA
32958045 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
32958075 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
32958105 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
32958135 TGAGCTA
1 TGAGCTA
32958142 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:32962785 original size:30 final size:30
Alignment explanation
Indices: 32962751--32962847 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
32962741 TTAAACTAAA
32962751 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
32962781 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
32962811 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
32962841 TGAGCTA
1 TGAGCTA
32962848 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:32963168 original size:24 final size:24
Alignment explanation
Indices: 32963127--32963173 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32963117 CTGTCAAGAG
***
32963127 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAACAGATAAGGGAT
32963151 AGGATTTAGGAACAGATAAGGGA
1 AGGATTTAGGAACAGATAAGGGA
32963174 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAACAGATAAGGGAT
Found at i:32964631 original size:27 final size:26
Alignment explanation
Indices: 32964591--32964702 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
32964581 AGGAAGCGTC
*
32964591 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
32964618 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
32964645 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
32964673 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
32964699 CTGG
1 CTGG
32964703 CAGCCATGTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:32964695 original size:54 final size:54
Alignment explanation
Indices: 32964591--32964702 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
32964581 AGGAAGCGTC
*
32964591 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
32964645 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
32964699 CTGG
1 CTGG
32964703 CAGCCATGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:32969243 original size:48 final size:48
Alignment explanation
Indices: 32969129--32969634 Score: 627
Period size: 48 Copynumber: 10.6 Consensus size: 48
32969119 AGGTCCCGTA
* * * *
32969129 TAAGACCATGTCTGGGACATGGCATCGGCATCGATATGAGA-CCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * * *
32969176 TAAGAACATGTCTAGGACATGGCATCGACATTGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * * **
32969224 TAAGACCATGTCTGAGACATAGCATTGTTGTTGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * *
32969272 TAATACCATGTTTGGGACATGGCATCGGCGTGGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
*
32969320 TAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * *
32969368 TAAGACTATGCCTGGGACATGGCATCGGCGTTAATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * * * * *
32969416 TAAGACCATGTCTAGGATATGACATCAGTGTGGATATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * *
32969464 TAAGACCATGTCTGGGACATGGCATCAGTGTTGATATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* ** *
32969512 TAAGACCATGTTTGGGACATGGCATCGGTATTGATATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
* * *** * * * *
32969560 TAAGACGATGTTTGGGACATGGCATCGGTACTAATATGTGTGCTAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
32969608 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
32969635 ACACTGACAT
Statistics
Matches: 402, Mismatches: 56, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
47 36 0.09
48 366 0.91
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTG
Found at i:32975478 original size:17 final size:17
Alignment explanation
Indices: 32975456--32975500 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
32975446 AATAGCGTGG
32975456 TGTTTTGAAAACATTTA
1 TGTTTTGAAAACATTTA
*
32975473 TGTTTTGAAAACCTTTA
1 TGTTTTGAAAACATTTA
*
32975490 TCTTTTGAAAA
1 TGTTTTGAAAA
32975501 TTCGTGTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47
Consensus pattern (17 bp):
TGTTTTGAAAACATTTA
Found at i:32976163 original size:26 final size:26
Alignment explanation
Indices: 32976133--32976193 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
32976123 ATGCTCAAAT
**
32976133 ACAGTCATACATTTCATAGGGGTATA
1 ACAGTCATACACCTCATAGGGGTATA
* **
32976159 TCAGTCATTTTACCTCATAGGGGTATA
1 ACAGTCA-TACACCTCATAGGGGTATA
32976186 ACAGTCAT
1 ACAGTCAT
32976194 TTCATCAGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (26 bp):
ACAGTCATACACCTCATAGGGGTATA
Found at i:32979925 original size:44 final size:44
Alignment explanation
Indices: 32979862--32980040 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 44
32979852 TATATTGTAG
32979862 ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGCTAAATAT
1 ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGCTAAATAT
* *
32979906 ATTGGCACTAAGTGTGTGAGAC-AAGATAGCTTCGGCTAAATACT
1 ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGCTAAATA-T
* * * * * *
32979950 -TTGGCACTAAGTATGCGAGA-TCAAATAACTTCGGCTGTATACATAT
1 ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGC--TA-A-ATAT
* * * *
32979996 ATTGGCACTTAGTGTGTGTA-ATTGAGATAGCTCCAGCTATATAT
1 ATTGGCACTAAGTGTGTG-AGACTGAGATAGCTTCAGCTAAATAT
32980040 A
1 A
32980041 CATATTAGAT
Statistics
Matches: 110, Mismatches: 16, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
43 47 0.43
44 28 0.25
45 2 0.02
46 4 0.04
47 18 0.16
48 11 0.10
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (44 bp):
ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGCTAAATAT
Found at i:32979947 original size:43 final size:43
Alignment explanation
Indices: 32979862--32980013 Score: 173
Period size: 43 Copynumber: 3.4 Consensus size: 43
32979852 TATATTGTAG
* *
32979862 ATTGGCACTAAGTGTGTGAGACTGAGATAGCTTCAGCTAAATAT
1 ATTGGCACTAAGTGTGTGAGAC-AAGATAGCTTCGGCTAAATAT
32979906 ATTGGCACTAAGTGTGTGAGACAAGATAGCTTCGGCTAAATACT
1 ATTGGCACTAAGTGTGTGAGACAAGATAGCTTCGGCTAAATA-T
* * *
32979950 -TTGGCACTAAGTATGCGAGATCAA-ATAACTTCGGCTGTATACATAT
1 ATTGGCACTAAGTGTGTGAGA-CAAGATAGCTTCGGC--TA-A-ATAT
*
32979996 ATTGGCACTTAGTGTGTG
1 ATTGGCACTAAGTGTGTG
32980014 TAATTGAGAT
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
43 46 0.49
44 26 0.28
45 2 0.02
46 2 0.02
47 17 0.18
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGTGAGACAAGATAGCTTCGGCTAAATAT
Found at i:32981297 original size:17 final size:16
Alignment explanation
Indices: 32981264--32981298 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
32981254 ATGAAAGCTA
*
32981264 TTTCAATTGTTGAAGT
1 TTTCAATTGTCGAAGT
32981280 TTTCAATTGTGCGAAGT
1 TTTCAATTGT-CGAAGT
32981297 TT
1 TT
32981299 GATTTGGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.49
Consensus pattern (16 bp):
TTTCAATTGTCGAAGT
Found at i:32982184 original size:43 final size:43
Alignment explanation
Indices: 32982096--32982213 Score: 182
Period size: 43 Copynumber: 2.7 Consensus size: 43
32982086 ATATATATTG
*
32982096 TACATTGGCACTAAGTGTGCGAGACTGAGATAGCTCCGGCTAAA
1 TACATTGGCACTAAGTGTGCGAGAC-CAGATAGCTCCGGCTAAA
* *
32982140 TATATTGGCACTAAGTGTGCGAGACCAGATAGCTTCGGCTAAA
1 TACATTGGCACTAAGTGTGCGAGACCAGATAGCTCCGGCTAAA
* *
32982183 TACATTGGCACTAAGTGTGCGAAATCAGATA
1 TACATTGGCACTAAGTGTGCGAGACCAGATA
32982214 ACTTTAGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 44 0.65
44 24 0.35
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (43 bp):
TACATTGGCACTAAGTGTGCGAGACCAGATAGCTCCGGCTAAA
Found at i:32984267 original size:48 final size:48
Alignment explanation
Indices: 32984152--32984282 Score: 156
Period size: 48 Copynumber: 2.7 Consensus size: 48
32984142 AACATTATGA
* * * * *
32984152 GAGCCAGTGTAAGAGCATGTCTGGGACATGGCATTAGTATTGAGACTG
1 GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTGACACTG
* * *
32984200 GAGCTAGTGCAAGAACATGTCTAGGACATGGCATCAGCCTTGACA-TG
1 GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTGACACTG
* *
32984247 TGAGCCAATGTAAGACCATGTCTAGGACATGGCATC
1 -GAGCCAGTGTAAGAACATGTCTAGGACATGGCATC
32984283 GGCAATTTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
47 2 0.03
48 68 0.97
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTGACACTG
Found at i:32985796 original size:37 final size:37
Alignment explanation
Indices: 32985746--32985825 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
32985736 TTATTACGAA
* * * *
32985746 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTTCCCGGACAAAATCCCCACACGAAGTCATCGG
*
32985783 GTCTTTCCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTTCCCGGACAAAATCCCCACACGAAGTCATCGG
32985820 GTCTTT
1 GTCTTT
32985826 AGAGCTCGGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTTCCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32986065 original size:47 final size:47
Alignment explanation
Indices: 32985943--32986398 Score: 702
Period size: 47 Copynumber: 9.7 Consensus size: 47
32985933 CCCTCCGGGA
* * * * * *
32985943 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32985990 CCTGTCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32986035 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32986082 CTTACCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32986129 CTTACCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32986176 CTTACCACATATGTACACTTTCACATTCATCACATCGGCCATTAGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32986223 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32986270 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32986317 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32986364 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32986399 AGAATCCTAA
Statistics
Matches: 387, Mismatches: 19, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
45 37 0.10
46 1 0.00
47 349 0.90
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32989188 original size:25 final size:25
Alignment explanation
Indices: 32989151--32989202 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
32989141 AAGGAATTCG
32989151 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
32989176 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
32989201 CA
1 CA
32989203 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:32989422 original size:40 final size:40
Alignment explanation
Indices: 32989378--32989720 Score: 327
Period size: 40 Copynumber: 8.6 Consensus size: 40
32989368 CCAGCATGAT
* * * * *
32989378 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
32989418 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
32989458 TGCTCTTCGGAACTTAGCCCGGAGACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
32989498 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
32989538 TGCTCTTCGGAACTTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * *
32989578 TGCTCTTCGGGACTTAGCTCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* ** * * *
32989619 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
32989659 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
*
32989699 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
32989721 CATCATTTGA
Statistics
Matches: 256, Mismatches: 42, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.01
40 233 0.91
41 20 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:32991626 original size:37 final size:37
Alignment explanation
Indices: 32991576--32991654 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32991566 TTATTATGAA
* * *
32991576 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32991613 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32991650 GTCTT
1 GTCTT
32991655 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32991851 original size:47 final size:47
Alignment explanation
Indices: 32991773--32992089 Score: 492
Period size: 47 Copynumber: 6.7 Consensus size: 47
32991763 CCCTTCGGGA
* * * * * *
32991773 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32991820 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32991867 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32991914 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32991961 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32992008 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32992055 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32992090 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 253 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32997312 original size:33 final size:33
Alignment explanation
Indices: 32997270--32997335 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
32997260 TCTATTCTAA
32997270 CTTAACCTAACAATTAAAACAACCCTTCATTAT
1 CTTAACCTAACAATTAAAACAACCCTTCATTAT
32997303 CTTAACCTAACAATTAAAACAACCCTTCATTAT
1 CTTAACCTAACAATTAAAACAACCCTTCATTAT
32997336 AAACTTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.30
Consensus pattern (33 bp):
CTTAACCTAACAATTAAAACAACCCTTCATTAT
Found at i:33001637 original size:23 final size:23
Alignment explanation
Indices: 33001614--33001659 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
33001604 TTTTTCTATT
*
33001614 ATAAAAATATAATTTATTTAATTA
1 ATAAAAATA-AATTTAGTTAATTA
*
33001638 ATTAAAATAAATTTAGTTAATT
1 ATAAAAATAAATTTAGTTAATT
33001660 TACTCAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
ATAAAAATAAATTTAGTTAATTA
Found at i:33017397 original size:27 final size:27
Alignment explanation
Indices: 33017349--33017428 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
33017339 CTAGTGGCTA
*
33017349 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTGGTGGCAC
*
33017377 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTGGTGGCAC
*
33017404 AGCCACAAAATATCTGTATCTGGTG
1 TGCCAC-AAATATCTGT-TCTGGTG
33017429 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 22 0.48
28 17 0.37
29 7 0.15
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGGCAC
Found at i:33017916 original size:19 final size:19
Alignment explanation
Indices: 33017892--33017930 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
33017882 TTTTAATTAT
* *
33017892 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
33017911 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
33017930 T
1 T
33017931 ATGATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:33020373 original size:42 final size:43
Alignment explanation
Indices: 33020326--33020408 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
33020316 TGTACAACCA
* *
33020326 TGTTTGGGACA-TCGGCATCG-TATTTGATTTCTTGTAAGACAC
1 TGTTTGGGACAGT-GGCATCGATATTTGATTACATGTAAGACAC
33020368 TGTTTGGGACAGTGGCATCGATATTTGATTACATGTAAGAC
1 TGTTTGGGACAGTGGCATCGATATTTGATTACATGTAAGAC
33020409 TACGACTGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (43 bp):
TGTTTGGGACAGTGGCATCGATATTTGATTACATGTAAGACAC
Found at i:33020419 original size:43 final size:42
Alignment explanation
Indices: 33020330--33020419 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 42
33020320 CAACCATGTT
* * **
33020330 TGGGACATCGGCATCGTATTTGATTTCTTGTAAGACACTGTT
1 TGGGACATCGGCATCGTATTTGATTACATGTAAGACACTGAC
33020372 TGGGACAGT-GGCATCGATATTTGATTACATGTAAGACTAC-GAC
1 TGGGACA-TCGGCATCG-TATTTGATTACATGTAAGAC-ACTGAC
33020415 TGGGA
1 TGGGA
33020420 TGTTGGCATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
42 14 0.34
43 25 0.61
44 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (42 bp):
TGGGACATCGGCATCGTATTTGATTACATGTAAGACACTGAC
Found at i:33021236 original size:22 final size:23
Alignment explanation
Indices: 33021194--33021236 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
33021184 TTATGATTTG
*
33021194 GCATGATTTTGATATGGTTATAA
1 GCATGAATTTGATATGGTTATAA
*
33021217 GCATGAATTTGGT-TGGTTAT
1 GCATGAATTTGATATGGTTAT
33021237 GATATGGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (23 bp):
GCATGAATTTGATATGGTTATAA
Found at i:33023336 original size:12 final size:12
Alignment explanation
Indices: 33023319--33023343 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33023309 TTTTGGATGA
33023319 ATTTGATTGAAT
1 ATTTGATTGAAT
33023331 ATTTGATTGAAT
1 ATTTGATTGAAT
33023343 A
1 A
33023344 ATTTTAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTTGATTGAAT
Found at i:33026348 original size:31 final size:31
Alignment explanation
Indices: 33026313--33026375 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
33026303 CCTTTTCATA
* *
33026313 TTTCATATTTCATAACATTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
**
33026344 TTTCATATTCCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
33026375 T
1 T
33026376 CACTGTAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:33026655 original size:26 final size:25
Alignment explanation
Indices: 33026584--33026667 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
33026574 CTGGAGGCCT
* *
33026584 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTAGGGCAAA
33026608 AGCCCTTTTGATAAACTAGGGCAAA
1 AGCCCTTTTGATAAACTAGGGCAAA
*
33026633 AGCCCTTTTCGGTAAACTAGGGCAAA
1 AGCCCTTTT-GATAAACTAGGGCAAA
*
33026659 GGCCCTTTT
1 AGCCCTTTT
33026668 TGCACTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 7 0.13
24 12 0.23
25 11 0.21
26 23 0.43
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTAGGGCAAA
Found at i:33034274 original size:26 final size:25
Alignment explanation
Indices: 33034203--33034286 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
33034193 CTGGAGGCCT
*
33034203 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
33034227 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
*
33034252 AGCCCTTTTCGGTAAACTGGGGCAAA
1 AGCCCTTTT-GATAAACTGGGGCAAA
33034278 AGCCCTTTT
1 AGCCCTTTT
33034287 TGCACTTCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 11 0.20
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:33040661 original size:40 final size:40
Alignment explanation
Indices: 33040459--33040654 Score: 297
Period size: 40 Copynumber: 4.9 Consensus size: 40
33040449 CCTTTGGAAT
* * *
33040459 TTAG-CCGGATATAG-CAACTCGCACGAATGCCTTCGGGAT
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGAC
*
33040498 TTAGCCCGGACATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* *
33040538 TTAACCTGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
33040578 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* *
33040618 TTAGCCCGGATGTAATCACTAGCACAAATGCCTTCGG
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
33040655 ATCTTAGTCC
Statistics
Matches: 144, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 4 0.03
40 139 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:33043116 original size:22 final size:23
Alignment explanation
Indices: 33043091--33043136 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
33043081 CAACCAAATC
33043091 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
33043113 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
33043136 A
1 A
33043137 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:33043142 original size:23 final size:23
Alignment explanation
Indices: 33043098--33043142 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
33043088 ATCAATTCAA
*
33043098 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
33043121 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
33043143 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:33058651 original size:25 final size:25
Alignment explanation
Indices: 33058623--33058692 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
33058613 CTCTTTTAAT
33058623 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
33058648 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
33058673 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33058693 AGCACTTCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:33058927 original size:27 final size:27
Alignment explanation
Indices: 33058897--33059055 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
33058887 GGCAAAATGA
* * * *
33058897 TAATTTTACCCCACAAGAGTATGTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
33058924 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
* * *
33058951 TATTTCTACCCTACAAGGTTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGG
*
33058978 TAATTCTACCCTAC-AGAGGTATTTCAG
1 TAATTCTACCCTACAAG-GGTATTTCGG
*
33059005 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGG
33059032 TAATTCTACCCTACAAGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
33059056 TGTTATTTTA
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 111 0.97
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGG
Found at i:33059032 original size:81 final size:81
Alignment explanation
Indices: 33058897--33059057 Score: 252
Period size: 81 Copynumber: 2.0 Consensus size: 81
33058887 GGCAAAATGA
* * *
33058897 TAATTTTACCCCACAAGAGTATGTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCCACAAGAGTATGTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
*
33058962 TACAAGGTTATTTTGG
66 TACAAGGGTATTTTGG
* *
33058978 TAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 TAATTCTACCCCACAAGA-GTATGTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
33059042 CTACAAGGGTATTTTG
65 CTACAAGGGTATTTTG
33059058 TTATTTTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
80 3 0.04
81 70 0.96
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCCACAAGAGTATGTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAAGGGTATTTTGG
Found at i:33059131 original size:27 final size:27
Alignment explanation
Indices: 33059047--33059186 Score: 133
Period size: 27 Copynumber: 5.2 Consensus size: 27
33059037 CTACCCTACA
*
33059047 AGGGTATTTT-GTTATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
* * * *
33059073 AGAGTATTTCGATAATTTCACAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
**
33059099 AGGGGTATTTTGGTAATTTTACTGATCG
1 A-GGGTATTTTGGTAATTTTACAAATCG
* *
33059127 AGGGTATTTTGGTAATTTT-CTAAACCA
1 AGGGTATTTTGGTAATTTTAC-AAATCG
* **
33059154 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
33059181 AGGGTA
1 AGGGTA
33059187 AAACGGTAAT
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
26 10 0.11
27 79 0.88
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:33059183 original size:54 final size:54
Alignment explanation
Indices: 33059137--33059388 Score: 184
Period size: 54 Copynumber: 4.7 Consensus size: 54
33059127 AGGGTATTTT
*
33059137 GGTAATTTTCTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
* * **** * *
33059191 GGTAATTCTGTAAATCAAGGGTAAAGCAGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
* * *** *
33059245 GGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCG-GGGATAAAAC
1 GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGG-TAAAAC
* * * * * *** * * * *
33059299 ATGT-ATTCTATAAATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAAT
1 -GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
* * * * *
33059353 GGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTT
1 GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTT
33059389 ACAAATTGAG
Statistics
Matches: 164, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
53 5 0.03
54 154 0.94
55 5 0.03
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (54 bp):
GGTAATTTTCTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:33059212 original size:81 final size:81
Alignment explanation
Indices: 33059138--33059375 Score: 255
Period size: 81 Copynumber: 2.9 Consensus size: 81
33059128 GGGTATTTTG
* ***
33059138 GTAATTTTCTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTCTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
33059203 AATCAAGGGTAAAGCA
66 AATCAAGGGTAAAGCA
* * * * * *
33059219 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTA
1 GTAATTCTCTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
* *
33059284 AATC-GGGGATAAAACA
66 AATCAAGGG-TAAAGCA
* * * * * * * *
33059300 TGT-ATTCTATAAATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGT
1 -GTAATTCTCTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
*
33059364 AAATCGAGGGTA
65 AAATCAAGGGTA
33059376 CTTTGGTAAT
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.02
81 128 0.94
82 5 0.04
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (81 bp):
GTAATTCTCTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
AATCAAGGGTAAAGCA
Found at i:33059386 original size:27 final size:27
Alignment explanation
Indices: 33059165--33059375 Score: 275
Period size: 27 Copynumber: 7.8 Consensus size: 27
33059155 GGGTATTTTA
* *
33059165 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* ***
33059192 GTAATTCTGTAAATCAAGGGTAAAGCA
1 GTAATTCTGTAAATCGAGGGTAAAATG
33059219 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33059246 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33059273 GTAATTTTGTAAATCG-GGGATAAAACAT-
1 GTAATTCTGTAAATCGAGGG-T-AAA-ATG
* *
33059301 GT-ATTCTATAAATCGAGGATAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
33059327 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
33059354 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
33059376 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
25 2 0.01
26 8 0.05
27 145 0.88
28 7 0.04
29 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:33059394 original size:27 final size:27
Alignment explanation
Indices: 33059101--33059400 Score: 158
Period size: 27 Copynumber: 11.1 Consensus size: 27
33059091 CACAAATCAG
* * *
33059101 GGGTATTTTGGTAATTTTACT-GATCGA
1 GGGTAATTTGGTAATTCTA-TAAATCGA
* * * * *
33059128 GGGTATTTTGGTAATTTTCTAAACCAA
1 GGGTAATTTGGTAATTCTATAAATCGA
* * * *
33059155 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTCTATAAATCGA
*** * *
33059182 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAATTTGGTAATTCTATAAATCGA
**** *
33059209 GGGTAAAGCAGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTCTATAAATCGA
** * *
33059236 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTCTATAAATCGA
** * *
33059263 GGGTAAAATGGTAATTTTGTAAATCG-
1 GGGTAATTTGGTAATTCTATAAATCGA
**
33059289 GGGATAAAACAT-GT-ATTCTATAAATCGA
1 GGG-T--AATTTGGTAATTCTATAAATCGA
* **
33059317 GGATAAAATGGTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTCTATAAATCGA
** *
33059344 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTCTATAAATCGA
* * * *
33059371 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAATTTGGTAATTCTATAAATCGA
33059398 GGG
1 GGG
33059401 CATTTTAGTA
Statistics
Matches: 230, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
25 4 0.02
26 6 0.03
27 212 0.92
28 4 0.02
29 4 0.02
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.34
Consensus pattern (27 bp):
GGGTAATTTGGTAATTCTATAAATCGA
Found at i:33059400 original size:54 final size:54
Alignment explanation
Indices: 33059165--33059400 Score: 253
Period size: 54 Copynumber: 4.4 Consensus size: 54
33059155 GGGTATTTTA
* * * ***
33059165 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAGCA
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAATTG
* * * *
33059219 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAATTG
* * * *
33059273 GTAATTTTGTAAATCG-GGGATAAAACAT-GT-ATTCTATAAATCGAGGATAAAATG
1 GTAATTTTATAAATCGAGGG-T-AAA-ATGGTAATTCTGTAAATCGAGGGTAAATTG
* **
33059327 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAATTG
* *
33059381 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
33059401 CATTTTAGTA
Statistics
Matches: 155, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
52 2 0.01
53 8 0.05
54 135 0.87
55 8 0.05
56 2 0.01
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAATTG
Found at i:33059413 original size:81 final size:81
Alignment explanation
Indices: 33059123--33059400 Score: 242
Period size: 81 Copynumber: 3.4 Consensus size: 81
33059113 AATTTTACTG
* * * * ***
33059123 ATCGAGGGTATTTTGGTAATT-TTCTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 ATCGAGGGTACTTTGGTAATTCTAC-AAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTA
*
33059187 AAACGGTAATTCTGTAA
65 AAATGGTAATTCTGTAA
* ***** ** *
33059204 ATCAAGGGTAAAGCAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAA
1 ATCGAGGGTACTTTGGTAATTCTACAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAA
*
33059269 AATGGTAATTTTGTAA
66 AATGGTAATTCTGTAA
* * * * * *
33059285 ATCG-GGGATAAAAC-AT-GT-ATTCTATAAATCGAGGATAAAATGGTAATTCTATAAATCGAGG
1 ATCGAGGG-T---ACTTTGGTAATTCTACAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGG
33059346 GTAAAATGGTAATTCTGTAA
62 GTAAAATGGTAATTCTGTAA
* *
33059366 ATCGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 ATCGAGGGTACTTTGGTAATTCTACAAATCGAGGG
33059401 CATTTTAGTA
Statistics
Matches: 158, Mismatches: 30, Indels: 18
0.77 0.15 0.09
Matches are distributed among these distances:
78 2 0.01
79 1 0.01
80 5 0.03
81 143 0.91
82 6 0.04
84 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (81 bp):
ATCGAGGGTACTTTGGTAATTCTACAAATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAA
AATGGTAATTCTGTAA
Found at i:33061838 original size:25 final size:25
Alignment explanation
Indices: 33061804--33061873 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
33061794 CTCTTTTAAT
*
33061804 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * *
33061829 AACTTGGGCAAAGCCCTTTACGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
33061854 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
33061874 AGCACTTTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:33062106 original size:27 final size:27
Alignment explanation
Indices: 33062076--33062236 Score: 180
Period size: 27 Copynumber: 6.0 Consensus size: 27
33062066 GGGCAAAATG
* * *
33062076 GTAATTTTACCCTACAAGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
** *
33062103 GTAATTCTACCCTATGGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
** * ** *
33062130 GTGTTTTTACCCTACAAAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
33062157 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
33062184 GTAATTCTACCCTACAGGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
33062210 GATAATTCTACCCTACAGGGGTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
33062237 GATATTTTAC
Statistics
Matches: 110, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 109 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:33062140 original size:54 final size:53
Alignment explanation
Indices: 33062075--33062246 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 53
33062065 GGGGCAAAAT
*
33062075 GGTAATTTTACCCTACAAGGGTATCTCAGTAATTCTACCCTATGGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTAT-TCAGTAATTCTACCCTATAGGGGTATTTC
** * *
33062129 GGTGTTTTTACCCTACAAAGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTA-TTCAGTAATTCTACCCTATAGGGGTATTTC
* * * ** *
33062183 AGTAATTCTACCCTACAGGGGTATTTTGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTCAG-TAATTCTACCCTATAGGGGTATTTC
*
33062237 GAT-ATTTTAC
1 GGTAATTTTAC
33062247 AAATTGAGAG
Statistics
Matches: 99, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
53 9 0.09
54 89 0.90
55 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.37
Consensus pattern (53 bp):
GGTAATTTTACCCTACAAGGGTATTCAGTAATTCTACCCTATAGGGGTATTTC
Found at i:33062222 original size:81 final size:81
Alignment explanation
Indices: 33062075--33062237 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 81
33062065 GGGGCAAAAT
* ** * ** *
33062075 GGTAATTTTACCCTACAAGGGTATCTCAGTAATTCTACCCTATGGGGGTATTTCGGTGTTTTTAC
1 GGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
33062140 CCTACAAAGGTATTTC
66 CCTACAAAGGTATTTC
* * * *
33062156 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
**
33062221 CCTACAGGGGTATTTC
66 CCTACAAAGGTATTTC
33062237 G
1 G
33062238 ATATTTTACA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
CCTACAAAGGTATTTC
Found at i:33062295 original size:27 final size:27
Alignment explanation
Indices: 33062279--33062423 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
33062269 TTCATAAATT
*
33062279 AGGGGTATTTTGGTAATTTTACAAGCC
1 AGGGGTATTTTGGTAATTTTACAAACC
33062306 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
33062333 GGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
33062360 AGGGGTATTTTGGTAATTTTACTAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
**
33062387 -GAGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACC
*
33062414 AAGGGTATTT
1 AGGGGTATTT
33062424 CAGTAATTCT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.99
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:33062370 original size:81 final size:81
Alignment explanation
Indices: 33062279--33062431 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
33062269 TTCATAAATT
**
33062279 AGGGGTATTTTGGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCGGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACTAAGCCA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
33062343 TAGTAATTTTACAAACC
65 CAGTAATTTTACAAACC
* * **
33062360 AGGGGTATTTTGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
1 AGGGGTATTTTGGTAATTTTACTAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
33062425 AGTAATT
66 AGTAATT
33062432 CTGTAAATCA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
81 60 0.94
82 4 0.06
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACTAAGCCAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
AGTAATTTTACAAACC
Found at i:33062430 original size:54 final size:53
Alignment explanation
Indices: 33062281--33062458 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 53
33062271 CATAAATTAG
* * * *
33062281 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AATCGA
* *
33062335 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC-AATCGA
** ** *
33062389 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTCTGTA-AATCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT-T-TACAATCGA
**
33062443 GGGTAAATTGGTAATT
1 GGGTATTTTGGTAATT
33062459 CTGTAAATCG
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
54 105 0.97
55 1 0.01
56 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAATCGA
Found at i:33062436 original size:27 final size:26
Alignment explanation
Indices: 33062362--33062499 Score: 109
Period size: 27 Copynumber: 5.1 Consensus size: 26
33062352 TACAAACCAG
*
33062362 GGGTATTTTGGTAATT-T-TACTAATCGA
1 GGGTA-TTTGGTAATTCTGTA--AATCAA
* *
33062389 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTA-TTTGGTAATTCTGTAAATCAA
*
33062416 GGGTATTTCAGTAATTCTGTAAATCAA
1 GGGTATTT-GGTAATTCTGTAAATCAA
* *
33062443 GGGTAAATTGGTAATTCTGTAAATCGA
1 GGGT-ATTTGGTAATTCTGTAAATCAA
** *
33062470 GGGTAAAATGGTAATTCTATAAATCGAA
1 GGGT-ATTTGGTAATTCTGTAAATC-AA
33062498 GG
1 GG
33062500 TTAAACGGTA
Statistics
Matches: 95, Mismatches: 11, Indels: 9
0.83 0.10 0.08
Matches are distributed among these distances:
26 3 0.03
27 83 0.87
28 7 0.07
29 2 0.02
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
GGGTATTTGGTAATTCTGTAAATCAA
Found at i:33062447 original size:81 final size:80
Alignment explanation
Indices: 33062281--33062474 Score: 219
Period size: 81 Copynumber: 2.4 Consensus size: 80
33062271 CATAAATTAG
* * ** *
33062281 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCGGGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAATCGA-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG
* *
33062346 TAATTTTACAAACCAG
65 TAATTCTACAAACCAA
**
33062362 GGGTATTTTGGTAATTTTACTAATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTAC-AATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAG
** *
33062427 TAATTCTGTAAATCAA
65 TAATTCTACAAACCAA
**
33062443 GGGTAAATTGGTAATTCTGTA-AATCGAGGGTA
1 GGGTATTTTGGTAATT-T-TACAATCGAGGGTA
33062475 AAATGGTAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
81 89 0.93
82 5 0.05
83 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGT
AATTCTACAAACCAA
Found at i:33062482 original size:81 final size:81
Alignment explanation
Indices: 33062383--33062636 Score: 246
Period size: 81 Copynumber: 3.1 Consensus size: 81
33062373 TAATTTTACT
*** * * ** * *
33062383 AATCGAGGGTATTTTGGTAATTTTGTAAA-CCAAGGGTATTTCAGTAATTCTGTAAATCAAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATCCAAGGGTA-AACAGTAATTCTATAAATCAAGGAT
** * *
33062447 AAATTGGTAATTCTGTA
65 AAAACGATAATTCTATA
* * * *
33062464 AATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTTAAACGGTAATTCTATAAATCGAGGATA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCCAAGGGTAAACAGTAATTCTATAAATCAAGGATA
*
33062529 AAACGATAATTTTATA
66 AAACGATAATTCTATA
* * *
33062545 AATCGAGGGTAAAATGGTAATTCTATAAAT-CGAGGGTAAA-ATGGTAATTCTATAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCCAAGGGTAAACA--GTAATTCTATAAATCAAGGA
33062608 TAAAAC-AGTAATTCTATA
64 TAAAACGA-TAATTCTATA
*
33062626 AATCGATGGTA
1 AATCGAGGGTA
33062637 CTTTGGTAAT
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
80 8 0.06
81 129 0.90
82 7 0.05
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCCAAGGGTAAACAGTAATTCTATAAATCAAGGATA
AAACGATAATTCTATA
Found at i:33062644 original size:81 final size:80
Alignment explanation
Indices: 33062426--33062663 Score: 296
Period size: 81 Copynumber: 2.9 Consensus size: 80
33062416 GGGTATTTCA
* * ** *
33062426 GTAATTCTGTAAATCAAGGGTAAATTGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAA-ACGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
*
33062491 AATCGAAGGTTAAACG
65 AATCGAAGGTAAAACG
* *
33062507 GTAATTCTATAAATCGAGGATAAAACGATAATTTTATAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACG-TAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
* *
33062572 AATCGAGGGTAAAATG
65 AATCGAAGGTAAAACG
* *** * *
33062588 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGATGGTACTTTGGTAATTTTACA
1 GTAATTCTATAAATCGAGGGTAAAAC-GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
*
33062653 AATTGAAGGTA
65 AATCGAAGGTA
33062664 TTTCAGTAAT
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.01
81 133 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (80 bp):
GTAATTCTATAAATCGAGGGTAAAACGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAA
ATCGAAGGTAAAACG
Found at i:33062647 original size:27 final size:27
Alignment explanation
Indices: 33062426--33062636 Score: 296
Period size: 27 Copynumber: 7.8 Consensus size: 27
33062416 GGGTATTTCA
* * *
33062426 GTAATTCTGTAAATCAAGGGTAAATTG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
33062453 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
33062480 GTAATTCTATAAATCGAAGGTTAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
33062507 GTAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
33062534 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
33062561 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
33062588 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
33062615 GTAATTCTATAAATCGATGGTA
1 GTAATTCTATAAATCGAGGGTA
33062637 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:33062674 original size:54 final size:54
Alignment explanation
Indices: 33062453--33062663 Score: 242
Period size: 54 Copynumber: 3.9 Consensus size: 54
33062443 GGGTAAATTG
* * * *
33062453 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTTAAACG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTAAAACA
* * * * * * **
33062507 GTAATTCTATAAATCGAGGATAAAACGATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTAAAACA
* *
33062561 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTAAAACA
* *** * *
33062615 GTAATTCTATAAATCGATGGTACTTTGGTAATTTTACAAATTGAAGGTA
1 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTA
33062664 TTTCAGTAAT
Statistics
Matches: 135, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 135 1.00
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAAGGTAAAACA
Found at i:33065070 original size:24 final size:25
Alignment explanation
Indices: 33065043--33065120 Score: 97
Period size: 25 Copynumber: 3.2 Consensus size: 25
33065033 GCCTAGCCTC
33065043 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* *
33065067 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
** *
33065092 TTTTGGTAAACTGGGGCATAG-CCT
1 TTTTAATAAACTGGGGCAAAGCCCT
33065116 TTTTA
1 TTTTA
33065121 GCACTTCCTC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 13 0.28
25 34 0.72
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:33065078 original size:25 final size:25
Alignment explanation
Indices: 33065050--33065119 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
33065040 CTCTTTTAAT
33065050 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
33065075 AACTAGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
33065100 AACTGGGGCATAG-CCTTTTT
1 AACTGGGGCAAAGCCCTTTTT
33065120 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 7 0.17
25 34 0.83
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:33065360 original size:27 final size:27
Alignment explanation
Indices: 33065322--33065455 Score: 196
Period size: 27 Copynumber: 5.0 Consensus size: 27
33065312 GGGGCAAAAT
* * *
33065322 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33065349 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33065376 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
33065403 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
33065430 AGTAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
33065456 TGATATTTTA
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:33065536 original size:27 final size:26
Alignment explanation
Indices: 33065447--33065643 Score: 162
Period size: 27 Copynumber: 7.3 Consensus size: 26
33065437 CTACCCTACA
* *
33065447 AGGGTATTTTGAT-ATTTTACAAATCG
1 AGGGTATTTTGGTAATTTTACAAA-CC
* * * * * *
33065473 AGAGTATTTCGATAATTTCATAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
* *
33065499 AGGGGTATTTTGGTAATTTTATAAGCC
1 A-GGGTATTTTGGTAATTTTACAAACC
*
33065526 AGAGGTGTTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACC
*
33065553 AGGGATATTTTAGTAATTTTACAAACC
1 AGGG-TATTTTGGTAATTTTACAAACC
* * *
33065580 AGGGGTATTTTGGTAATTTTGCAGATCG
1 A-GGGTATTTTGGTAATTTTACA-AACC
* **
33065608 AGGGTATTTTAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
33065634 AAGGGTATTT
1 -AGGGTATTT
33065644 CAGTAATTCT
Statistics
Matches: 139, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
26 17 0.12
27 116 0.83
28 6 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:33065623 original size:81 final size:81
Alignment explanation
Indices: 33065460--33065651 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 81
33065450 GTATTTTGAT
* * * * * * *
33065460 ATTTTACAAATCGAGAGTATTTC-GATAATTTCATAAATCAGGGGTATTTTGGTAATTTTATAAG
1 ATTTTACAAACCAAGGGTATTTCAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAG
* *
33065524 CCAGAGGTGTTTTGGTA
65 CCAGAGGTATTTTAGTA
* *
33065541 ATTTTACAAACC-AGGGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAGA
1 ATTTTACAAACCAAGGG-TATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACA-A
* *
33065605 TCGAG-GGTATTTTAGTA
64 GCCAGAGGTATTTTAGTA
**
33065622 ATTTTGTAAACCAAGGGTATTTCAGTAATT
1 ATTTTACAAACCAAGGGTATTTCAGTAATT
33065652 CTGTAAATCG
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
80 3 0.03
81 80 0.87
82 9 0.10
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
ATTTTACAAACCAAGGGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAGC
CAGAGGTATTTTAGTA
Done.