Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 103 of 320
Found at i:33065650 original size:54 final size:52
Alignment explanation
Indices: 33065501--33065694 Score: 165
Period size: 54 Copynumber: 3.6 Consensus size: 52
33065491 CATAAATCAG
* * * * *
33065501 GGGTATTTTGGTAATTTTATAAGCCAGAGGTGT-TTTGGTAATTTTACAAACCA
1 GGGTATTTTAGTAATTTTATAAACCA-AGG-GTATTTGGTAATTTTGCAATCGA
* *
33065554 GGGATATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAGATCGA
1 GGG-TATTTTAGTAATTTTATAAACCAAGGGTA-TTTGGTAATTTTGCA-ATCGA
* * * *
33065609 GGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCAGTAATTCTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAACCAAGGGTATTT-GGTAATTTTG-CAATCGA
*** * * *
33065663 GGGTAAAATGGTAATTCTATAAATCAAGGGTA
1 GGGTATTTTAGTAATTTTATAAACCAAGGGTA
33065695 AAATGATAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 8 0.07
54 98 0.85
55 7 0.06
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (52 bp):
GGGTATTTTAGTAATTTTATAAACCAAGGGTATTTGGTAATTTTGCAATCGA
Found at i:33065656 original size:27 final size:27
Alignment explanation
Indices: 33065608--33065667 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
33065598 TTGCAGATCG
* *
33065608 AGGGTATTTTAGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTCTGTAAACCA
* *
33065635 AGGGTATTTCAGTAATTCTGTAAATCG
1 AGGGTATTTCAGTAATTCTGTAAACCA
33065662 AGGGTA
1 AGGGTA
33065668 AAATGGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTCTGTAAACCA
Found at i:33065676 original size:27 final size:27
Alignment explanation
Indices: 33065646--33065829 Score: 251
Period size: 27 Copynumber: 6.8 Consensus size: 27
33065636 GGGTATTTCA
*
33065646 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
33065673 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
33065700 ATAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
33065727 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
33065754 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
33065781 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
33065808 ATAATTTTGTAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
33065830 CTTTCTTAAT
Statistics
Matches: 138, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:33065705 original size:54 final size:54
Alignment explanation
Indices: 33065647--33065829 Score: 285
Period size: 54 Copynumber: 3.4 Consensus size: 54
33065637 GGTATTTCAG
33065647 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGA
* * * * *
33065701 TAATTCTGTAAATCGAGGATAAAACGATAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGA
* * *
33065755 TAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATAA
1 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGA
*
33065809 TAATTTTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
33065830 CTTTCTTAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 115 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGA
Found at i:33065854 original size:81 final size:81
Alignment explanation
Indices: 33065647--33065854 Score: 236
Period size: 81 Copynumber: 2.6 Consensus size: 81
33065637 GGTATTTCAG
* * * * * *
33065647 TAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAATGATAATTCTGTAA
1 TAATTCTATAAATCGAGGGTAAAATCGTAATTTTACAAATCGAGGGTAAAATGATAATTCTATAA
* *
33065712 ATCGAGGATAAAACGA
66 ATCAAGGATAAAACAA
* * *
33065728 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATCGTAATTTTACAAATCGAGGGTAAAATGATAATTCTATAA
* *
33065793 ATCAAGGGTAAAATAA
66 ATCAAGGATAAAACAA
* * *** * *
33065809 TAATTTTGTAAATCGAGGGTACTTTCTTAATTTTACAAATTGAGGG
1 TAATTCTATAAATCGAGGGTAAAATCGTAATTTTACAAATCGAGGG
33065855 CATTTTAGTA
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (81 bp):
TAATTCTATAAATCGAGGGTAAAATCGTAATTTTACAAATCGAGGGTAAAATGATAATTCTATAA
ATCAAGGATAAAACAA
Found at i:33069711 original size:16 final size:16
Alignment explanation
Indices: 33069692--33069723 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33069682 AATTATTTTA
33069692 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
33069708 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
33069724 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:33070025 original size:50 final size:50
Alignment explanation
Indices: 33069969--33070317 Score: 292
Period size: 50 Copynumber: 6.9 Consensus size: 50
33069959 TACGACCTAT
* ** *
33069969 CAATCTGGTACACGTACTAGCCTGGACTTAGTACTGCACACGTGACTTAA
1 CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAA
* * *
33070019 CCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGA-TCGAA
1 CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACT-TAA
* * * * * * * *
33070069 GTTAAT-GGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAT
1 --CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAA
* * *
33070120 CAATCTGGTACAGGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAG
1 CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAA
* * * * * * *
33070170 CCATCTGATACACTTAGTAGCCTACAATTAGAACTACACACATGA-TCGAA
1 CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACT-TAA
* * * * * * * *
33070220 GTTAA-CGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
1 --CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAA
* * *
33070271 CAATCTGGTACACATAGTAGCCTCCACTTAGCACTACACACGTGACT
1 CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACT
33070318 CACAACGGAT
Statistics
Matches: 230, Mismatches: 59, Indels: 20
0.74 0.19 0.06
Matches are distributed among these distances:
49 7 0.03
50 152 0.66
51 68 0.30
52 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
CAATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAA
Found at i:33070217 original size:151 final size:151
Alignment explanation
Indices: 33069926--33070317 Score: 606
Period size: 151 Copynumber: 2.6 Consensus size: 151
33069916 GAAGCTCTCT
* * * * *
33069926 GGTACGCAAAATAG-CTGCACTTTGTACTACACATACGACCTATCAATCTGGTACACGTACTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
33069990 CTGGACTTAGTACTGCACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACAATTAGAACTA
* *
33070055 CACACGTGATCGAAGTTAATG
131 CACACATGATCGAAGTTAACG
* *
33070076 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACAGGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
33070141 CTGCACTTAGTACTACACACGTGACTTAGCCATCTGATACACTTAGTAGCCTACAATTAGAACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACAATTAGAACTA
33070206 CACACATGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* *
33070227 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* *
33070292 CTCCACTTAGCACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
33070318 CACAACGGAT
Statistics
Matches: 220, Mismatches: 21, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
150 12 0.05
151 208 0.95
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACAATTAGAACTA
CACACATGATCGAAGTTAACG
Found at i:33076830 original size:42 final size:42
Alignment explanation
Indices: 33076783--33076874 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
33076773 TGGCCCTTAG
*
33076783 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
33076825 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
33076867 GCCCATTT
1 GCCCATTT
33076875 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
Found at i:33077921 original size:27 final size:28
Alignment explanation
Indices: 33077890--33077958 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
33077880 TACGGAACAT
*
33077890 AAGGGCATATT-C-GTCATTTTACCATAC
1 AAGGGC-TATTACGGTCACTTTACCATAC
*
33077917 AAGGG-TATTACGGTCACTTTACCCTAC
1 AAGGGCTATTACGGTCACTTTACCATAC
33077944 AAGGGCT-TTACGGTC
1 AAGGGCTATTACGGTC
33077959 TTTTTACCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
25 4 0.11
26 1 0.03
27 31 0.84
28 1 0.03
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (28 bp):
AAGGGCTATTACGGTCACTTTACCATAC
Found at i:33077964 original size:27 final size:27
Alignment explanation
Indices: 33077902--33077966 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
33077892 GGGCATATTC
33077902 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* *
33077929 GTCACTTTACCCTACAAGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
33077956 GTCTTTTTACC
1 GTCATTTTACC
33077967 TATTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:33078171 original size:54 final size:54
Alignment explanation
Indices: 33078108--33078266 Score: 155
Period size: 54 Copynumber: 2.9 Consensus size: 54
33078098 TTTGTAAATC
* *
33078108 AGGGCTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACCA
1 AGGG-TATTTTGGTAATTTCACAAACTAG-GGGTATTTCGATAATTTCACAAACCA
* * * * * *
33078163 ATGGTATTTCGATAATTTCACAAACTAGGGGTATTTCGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTCGATAATTTCACAAACCA
**
33078217 AGGGTATTTTGGTAA-TTCTATCCTA-TAGGGGTATTTC-AGTAATTTCACAA
1 AGGGTATTTTGGTAATTTC-A-CAAACTAGGGGTATTTCGA-TAATTTCACAA
33078267 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
54 75 0.88
55 7 0.08
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTCGATAATTTCACAAACCA
Found at i:33078230 original size:27 final size:27
Alignment explanation
Indices: 33077998--33078233 Score: 145
Period size: 27 Copynumber: 8.7 Consensus size: 27
33077988 TTCATCCTAC
* * * *
33077998 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
33078025 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
33078052 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
* **
33078080 CAAGGGTATTTCT-ATAATTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
33078107 CAGGGCTATTTTGGTAATTTTACAAATT
1 AAGGG-TATTTTGGTAATTTTACAAACT
* * * * *
33078135 GAGGGTATTTCGATAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
33078162 AATGGTATTTCGATAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
33078189 AGGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
33078216 AAGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
33078234 CTATCCTATA
Statistics
Matches: 167, Mismatches: 36, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
26 5 0.03
27 128 0.77
28 19 0.11
29 15 0.09
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:33078273 original size:27 final size:26
Alignment explanation
Indices: 33078120--33078273 Score: 89
Period size: 27 Copynumber: 5.7 Consensus size: 26
33078110 GGCTATTTTG
* *
33078120 GTAATTTTACAAATTGA-GGGTATTTC
1 GTAATTTCACAAA-CGAGGGGTATTTC
* **
33078146 GATAATTTCACAAACCAATGGTATTTC
1 G-TAATTTCACAAACGAGGGGTATTTC
*
33078173 GATAATTTCACAAACTAGGGGTATTTC
1 G-TAATTTCACAAACGAGGGGTATTTC
* * * *
33078200 GGTAATTTTACAAACTAAGGGTATTTTG
1 -GTAATTTCACAAACGAGGGGTA-TTTC
** *
33078228 GTAA-TTCTATCCTA-TAGGGGTATTTC
1 GTAATTTC-A-CAAACGAGGGGTATTTC
*
33078254 AGTAATTTCACAATCGAGGG
1 -GTAATTTCACAAACGAGGG
33078274 TAAAATGATA
Statistics
Matches: 100, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
26 8 0.08
27 83 0.83
28 9 0.09
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (26 bp):
GTAATTTCACAAACGAGGGGTATTTC
Found at i:33078289 original size:27 final size:25
Alignment explanation
Indices: 33078255--33078570 Score: 260
Period size: 27 Copynumber: 11.7 Consensus size: 25
33078245 GGGTATTTCA
*
33078255 GTAATTTCACAATCGAGGGTAAAATG
1 GTAATTTTA-AATCGAGGGTAAAATG
* *
33078281 ATAATTTTCTAAA-CTTAGGGTAAAATG
1 GTAA-TTT-TAAATC-GAGGGTAAAATG
* * *
33078308 GTAATTTTGTAAATCAATGGTAAAACG
1 GTAA-TTT-TAAATCGAGGGTAAAATG
*
33078335 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATT-T-TAAATCGAGGGTAAAATG
*
33078362 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATT-T-TAAATCGAGGGTAAAATG
33078389 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAA-TTT-TAAATC-GAGGGTAAAATG
33078416 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAA-TTT-TAAATCGAGGGTAAAATG
33078443 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATT-T-TAAATCGAGGGTAAAATG
* *
33078470 GTAATTCTATTAATCGAGGGTAAAACG
1 GTAATT-T-TAAATCGAGGGTAAAATG
* *
33078497 GTAATGTTGTAAA-CTGAGGGTGAAACG
1 GTAAT-TT-TAAATC-GAGGGTAAAATG
33078524 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATT-T-TAAATCGAGGGTAAAATG
*
33078551 GTAATTCTACAAATCGAGGG
1 GTAATT-T-TAAATCGAGGG
33078571 CATTTCAGTA
Statistics
Matches: 250, Mismatches: 27, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
26 11 0.04
27 232 0.93
28 7 0.03
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (25 bp):
GTAATTTTAAATCGAGGGTAAAATG
Found at i:33078340 original size:54 final size:54
Alignment explanation
Indices: 33078265--33078556 Score: 381
Period size: 54 Copynumber: 5.4 Consensus size: 54
33078255 GTAATTTCAC
* * * * * *
33078265 AATCGAGGGTAAAATGATAATTTTCTAAACTTAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
* * * *
33078319 AATCAATGGTAAAACGGTAATTCTGTAAA-TCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAATGGTAATTCTATA
* *
33078373 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
* * *
33078427 AATCGAGGGTAAAATGGTAATTCTGTAAA-TCGAGGGTAAAATGGTAATTCTATT
1 AATCGAGGGTAAAACGGTAATTTTGTAAACT-GAGGGTAAAATGGTAATTCTATA
* * *
33078481 AATCGAGGGTAAAACGGTAATGTTGTAAACTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
*
33078535 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
33078557 CTACAAATCG
Statistics
Matches: 205, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.01
54 201 0.98
55 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
Found at i:33078382 original size:81 final size:80
Alignment explanation
Indices: 33078265--33078570 Score: 375
Period size: 81 Copynumber: 3.8 Consensus size: 80
33078255 GTAATTTCAC
* * * * * *
33078265 AATCGAGGGTAAAATGATAATTTTCTAAA-CTTAGGGTAAAATGGTAATTTTGTAAATCAATGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
33078329 AAAACGGTAATTCTGTA
65 AAAACGGTAATT-TGTA
* *
33078346 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATC-GAGGGT
*
33078410 AAAATGGTAATTTTGTA
65 AAAACGGTAA-TTTGTA
* * * *
33078427 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATTAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
33078492 AAACGGTAATGTTGTA
66 AAACGGTAAT-TTGTA
* * * **
33078508 AA-CTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATC-GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGG
33078571 CATTTCAGTA
Statistics
Matches: 198, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.02
81 191 0.96
82 4 0.02
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.30
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTTGTA
Found at i:33080784 original size:41 final size:43
Alignment explanation
Indices: 33080688--33080788 Score: 109
Period size: 41 Copynumber: 2.4 Consensus size: 43
33080678 TAACAACGTT
* **
33080688 CTAGACATGGTCTTACATGCTATCTCATATCAATGCCACTGTC
1 CTAGACATGGTCTTACATGCAATCAAATATCAATGCCACTGTC
* * * *
33080731 CCAAACAGGGTCTTACATG-AATCAAATAT-GATGCCGA-TGTC
1 CTAGACATGGTCTTACATGCAATCAAATATCAATGCC-ACTGTC
33080772 CTAGACATGGTCTTACA
1 CTAGACATGGTCTTACA
33080789 CGTAACCATA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
41 23 0.49
42 8 0.17
43 16 0.34
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (43 bp):
CTAGACATGGTCTTACATGCAATCAAATATCAATGCCACTGTC
Found at i:33080830 original size:45 final size:45
Alignment explanation
Indices: 33080780--33080936 Score: 161
Period size: 45 Copynumber: 3.5 Consensus size: 45
33080770 TCCTAGACAT
* * * * **
33080780 GGTCTTACACGTAACCATATTTATCGATGCCAAAATTCCAGACGC
1 GGTCTTACACGAAAACACATATATCGATGCCAAAACCCCAGACGC
* ** *
33080825 GGTCTTACACGAAAACACATATACCGATGCCAACGCCCCAGACGT
1 GGTCTTACACGAAAACACATATATCGATGCCAAAACCCCAGACGC
*** **
33080870 GGTCTTACACGAAAACACATATATCGATGCCAACGTCCCAGACTT
1 GGTCTTACACGAAAACACATATATCGATGCCAAAACCCCAGACGC
* *
33080915 AGTCTTACACAAAAACACATAT
1 GGTCTTACACGAAAACACATAT
33080937 CAAAATCCTA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 97 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.22
Consensus pattern (45 bp):
GGTCTTACACGAAAACACATATATCGATGCCAAAACCCCAGACGC
Found at i:33083482 original size:33 final size:36
Alignment explanation
Indices: 33083422--33083492 Score: 112
Period size: 33 Copynumber: 2.1 Consensus size: 36
33083412 TGTATTTAAG
33083422 TTAAATTAAATAAAAATAAGGGATAAAATTGATTCA
1 TTAAATTAAATAAAAATAAGGGATAAAATTGATTCA
*
33083458 TTAAATTAAA-AAAAA-AA-GGTTAAAATTGATTCA
1 TTAAATTAAATAAAAATAAGGGATAAAATTGATTCA
33083491 TT
1 TT
33083493 CATCCTTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 17 0.50
34 2 0.06
35 5 0.15
36 10 0.29
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.32
Consensus pattern (36 bp):
TTAAATTAAATAAAAATAAGGGATAAAATTGATTCA
Found at i:33094196 original size:30 final size:30
Alignment explanation
Indices: 33094150--33094210 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33094140 ATTCCCGAGC
33094150 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
33094180 TAGGGGTAAAATTGTAATTTTGTAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
33094210 T
1 T
33094211 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.02, G:0.25, T:0.33
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:33094992 original size:68 final size:66
Alignment explanation
Indices: 33094920--33095067 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 66
33094910 CATCATGTGT
* * * *
33094920 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
33094983 TGTAG
62 TGTAG
* * * *
33094988 ACAAGAGAGCTACTGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
33095053 AG
65 AG
33095055 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
33095068 GAGATAAATT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 3 0.04
67 26 0.38
68 13 0.19
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:33095025 original size:64 final size:64
Alignment explanation
Indices: 33094944--33095127 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 64
33094934 AGACATTATG
* * *
33094944 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACTG-GATAT
1 ATGTAGCTAGGTCGCATGCGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC-GAGATAA
* * * *
33095008 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGCGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
33095073 AA
63 AA
* * * *
33095075 AT-TGGCTAGGTCACATGTGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGCGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
33095128 CGAACTTTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGCGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:33098338 original size:40 final size:40
Alignment explanation
Indices: 33098278--33098492 Score: 412
Period size: 40 Copynumber: 5.4 Consensus size: 40
33098268 CGGATGTAAC
* *
33098278 AACCAGCACGAATGACTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
33098318 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
33098358 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
33098398 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
33098438 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
33098478 AACCCGCACGAATGC
1 AACCCGCACGAATGC
33098493 TATGCACATA
Statistics
Matches: 173, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:33106903 original size:40 final size:40
Alignment explanation
Indices: 33106854--33106948 Score: 172
Period size: 40 Copynumber: 2.4 Consensus size: 40
33106844 CGGATGTAGC
33106854 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAATA
1 AACC-GCACGAATGCCTTCGGGACTTAACCCGGTTATAATA
33106895 AACCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATA
1 AACCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATA
*
33106935 ACCCGCACGAATGC
1 AACCGCACGAATGC
33106949 TATGCACATA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 49 0.92
41 4 0.08
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (40 bp):
AACCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATA
Found at i:33115006 original size:36 final size:34
Alignment explanation
Indices: 33114950--33115021 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 34
33114940 AATTTAAAGA
33114950 GAAAAGAAAATAATTCAATTCCAAATGGAAATAG
1 GAAAAGAAAATAATTCAATTCCAAATGGAAATAG
* *
33114984 GAAAAGAGAGAATAA-TCTAATTCCAAATTGAAGTAG
1 GAAAAGA-A-AATAATTC-AATTCCAAATGGAAATAG
33115020 GA
1 GA
33115022 GTACAAAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 7 0.21
35 3 0.09
36 23 0.70
ACGTcount: A:0.53, C:0.08, G:0.18, T:0.21
Consensus pattern (34 bp):
GAAAAGAAAATAATTCAATTCCAAATGGAAATAG
Found at i:33116508 original size:20 final size:19
Alignment explanation
Indices: 33116485--33116541 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 19
33116475 GTATAAACTA
33116485 TAATTCATC-TGTATCAATAG
1 TAATTCATCAT-T-TCAATAG
33116505 TAATTCATTCATTTCAATAG
1 TAATTCA-TCATTTCAATAG
33116525 TAATTCATCCATTTCAA
1 TAATTCAT-CATTTCAA
33116542 CATGGCTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.03
20 29 0.85
21 3 0.09
22 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (19 bp):
TAATTCATCATTTCAATAG
Found at i:33116742 original size:23 final size:23
Alignment explanation
Indices: 33116713--33116788 Score: 91
Period size: 23 Copynumber: 3.3 Consensus size: 23
33116703 CTAATAAATA
33116713 GTAAGCTCTATTGAGTTGAAACG
1 GTAAGCTCTATTGAGTTGAAACG
* * *
33116736 GTAAGCTCTATCGAGCTG-AACA
1 GTAAGCTCTATTGAGTTGAAACG
* * *
33116758 GTAAGCTCAAATGAGTTGAATCG
1 GTAAGCTCTATTGAGTTGAAACG
33116781 GTAAGCTC
1 GTAAGCTC
33116789 CAATGAGCTA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
22 17 0.40
23 26 0.60
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGTTGAAACG
Found at i:33116797 original size:45 final size:45
Alignment explanation
Indices: 33116712--33116797 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
33116702 GCTAATAAAT
* * *
33116712 AGTAAGCTCTATTGAGTTGAAACGGTAAGCTCTATCGAGCTGAAC
1 AGTAAGCTCAAATGAGTTGAAACGGTAAGCTCAATCGAGCTGAAC
*
33116757 AGTAAGCTCAAATGAGTTGAATCGGTAAGCTCCAAT-GAGCT
1 AGTAAGCTCAAATGAGTTGAAACGGTAAGCT-CAATCGAGCT
33116798 AAAAACAGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 33 0.92
46 3 0.08
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (45 bp):
AGTAAGCTCAAATGAGTTGAAACGGTAAGCTCAATCGAGCTGAAC
Found at i:33119156 original size:41 final size:42
Alignment explanation
Indices: 33119079--33119178 Score: 121
Period size: 41 Copynumber: 2.4 Consensus size: 42
33119069 TCCCAAATAA
* *
33119079 GGTCTTACATGCAATCAAATATCGATGCCACTGTCCCAGAAAG
1 GGTCTTACACG-AATCAAATATCGATGCCAATGTCCCAGAAAG
* ** *
33119122 GGTCTTACACGAATCATATA-CGATGCCAATGTCCCAGGCAT
1 GGTCTTACACGAATCAAATATCGATGCCAATGTCCCAGAAAG
*
33119163 GGACTTACACGAATCA
1 GGTCTTACACGAATCA
33119179 CACATTGGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 32 0.64
42 8 0.16
43 10 0.20
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAATCAAATATCGATGCCAATGTCCCAGAAAG
Found at i:33119529 original size:21 final size:21
Alignment explanation
Indices: 33119488--33119538 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
33119478 TTGATCTAAA
* * *
33119488 TTAAT-ACAAATTTTACTAAT
1 TTAATCACACATTTAACCAAT
33119508 TTAATCACACATTTAACCAAT
1 TTAATCACACATTTAACCAAT
*
33119529 TCAATC-CACA
1 TTAATCACACA
33119539 AATACATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (21 bp):
TTAATCACACATTTAACCAAT
Found at i:33120840 original size:24 final size:24
Alignment explanation
Indices: 33120808--33120883 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
33120798 AGTCTGTCAA
* *
33120808 GAGAGGATTTATGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
33120832 GAGAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
33120856 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
33120880 GAGA
1 GAGA
33120884 ACAATGTTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.33, C:0.03, G:0.41, T:0.24
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:33122394 original size:26 final size:26
Alignment explanation
Indices: 33122286--33122396 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
33122276 AGGAAGCGTC
* * *
33122286 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
33122313 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
33122340 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * * *
33122367 CTGGTGACACTGTCACATTATCTATT
1 CTGGTGGCTCTGCCACATTATCTGTT
33122393 CTGG
1 CTGG
33122397 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:33126839 original size:93 final size:93
Alignment explanation
Indices: 33126731--33126903 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
33126721 CGCCCATAAG
* * * *
33126731 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
33126796 ACAAGTTCGGATGCCTAGTTACATTTCA
66 ACAAGTTCGGATGCCTAGTTACATTTCA
* *
33126824 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
33126889 ACGAGTTCGGATGCC
66 ACAAGTTCGGATGCC
33126904 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATTTCA
Found at i:33126899 original size:46 final size:46
Alignment explanation
Indices: 33126724--33126899 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
33126714 TGTAACCCGC
* * * * *
33126724 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
* * * * *
33126770 CCATAGGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTAGCAT
* * *
33126816 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
*
33126863 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
33126900 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 67 0.64
47 34 0.33
48 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
Found at i:33126918 original size:46 final size:45
Alignment explanation
Indices: 33126776--33126918 Score: 128
Period size: 46 Copynumber: 3.1 Consensus size: 45
33126766 GCATCCATAG
* * **
33126776 GTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACATTTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCA
* * * * *
33126824 -CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CA
*
33126869 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCA
33126915 GTGA
1 GTGA
33126919 CATGTCACTT
Statistics
Matches: 75, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
43 3 0.04
45 1 0.01
46 37 0.49
47 30 0.40
48 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCA
Found at i:33132748 original size:22 final size:23
Alignment explanation
Indices: 33132723--33132765 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
33132713 CACAATTTTC
*
33132723 TAGCT-TTGGCTTTTTGTTTTGG
1 TAGCTATTCGCTTTTTGTTTTGG
*
33132745 TAGCTATTCTCTTTTTGTTTT
1 TAGCTATTCGCTTTTTGTTTT
33132766 TCTCTCTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.07, C:0.12, G:0.19, T:0.63
Consensus pattern (23 bp):
TAGCTATTCGCTTTTTGTTTTGG
Found at i:33137017 original size:20 final size:20
Alignment explanation
Indices: 33136946--33137031 Score: 72
Period size: 20 Copynumber: 4.3 Consensus size: 20
33136936 GGATTGCAAA
33136946 TATATGAAATGGAAAAT-AT
1 TATATGAAATGGAAAATGAT
* *
33136965 ATATATGAAAT-GACATATAAT
1 -TATATGAAATGGA-AAATGAT
* *
33136986 TCA-ATGATATGGAAAATGGT
1 T-ATATGAAATGGAAAATGAT
33137006 TATATGAAATGGAAAAGTG-T
1 TATATGAAATGGAAAA-TGAT
33137026 TATATG
1 TATATG
33137032 TGAAAGAGGA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
19 3 0.06
20 44 0.81
21 7 0.13
ACGTcount: A:0.47, C:0.02, G:0.19, T:0.33
Consensus pattern (20 bp):
TATATGAAATGGAAAATGAT
Found at i:33138304 original size:43 final size:44
Alignment explanation
Indices: 33138247--33138375 Score: 165
Period size: 43 Copynumber: 3.0 Consensus size: 44
33138237 ACTACCGCGA
*
33138247 TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-
1 TGAGATAACATGTAAGACCATGTCTGGGACATTGGCATTGTATG
* * **
33138290 TGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATTG-ATG
1 TGAGATAACATGTAAGACCATGTCTGGGACATTGGCATTGTATG
* * *
33138333 TGAGATAACATGTAAGACCGTATCTGGGATA-TGGCATTGTATG
1 TGAGATAACATGTAAGACCATGTCTGGGACATTGGCATTGTATG
33138376 AGCTTTATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 10 0.14
43 64 0.86
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (44 bp):
TGAGATAACATGTAAGACCATGTCTGGGACATTGGCATTGTATG
Found at i:33141961 original size:46 final size:46
Alignment explanation
Indices: 33141870--33142085 Score: 213
Period size: 46 Copynumber: 4.6 Consensus size: 46
33141860 GTGTCAATGC
* * * **
33141870 CATGTCCCAAACATGGTCTTACACTGACTATCATCTC-ATAACCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGA-GGCCGATG
*
33141917 CATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCCGATG
* * * *
33141963 CATGTCCCAGACATGTCTTACAATAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
* * *
33142009 CCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGCCGATG
* * *
33142057 CATGTTCCAGACATCTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTGGCTC
33142086 ATGCAAGTGA
Statistics
Matches: 142, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 76 0.54
47 40 0.28
48 24 0.17
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCCGATG
Found at i:33142059 original size:94 final size:92
Alignment explanation
Indices: 33141870--33142085 Score: 251
Period size: 94 Copynumber: 2.3 Consensus size: 92
33141860 GTGTCAATGC
* * *
33141870 CATGTCCCAAACATGGTCTTACACT-GACTATCATCTCATAACCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCATAACCGATGCATATCCCAGACATGTC
* *
33141934 TTACACTGGCTTACGTCTCGAGGCCGATG
64 TTACACTGGCTTACATATCGAGGCCGATG
* *
33141963 CATGTCCCAGACATGTCTTACAATAGCTCTCATCTCA-ATGCCGATGCCATATCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATA-ACCGATG-CATATCCCAGACAT-GT
*
33142027 CTTACACTGGCTCT-CATAAT-GTGGCCGATG
63 CTTACACTGGCT-TACAT-ATCGAGGCCGATG
* *
33142057 CATGTTCCAGACATCTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
33142086 ATGCAAGTGA
Statistics
Matches: 106, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
91 1 0.01
92 25 0.24
93 27 0.25
94 51 0.48
95 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATAACCGATGCATATCCCAGACATGTCTT
ACACTGGCTTACATATCGAGGCCGATG
Found at i:33143704 original size:12 final size:12
Alignment explanation
Indices: 33143687--33143722 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
33143677 TGAATGTATA
33143687 AGTGTGGTTTTG
1 AGTGTGGTTTTG
33143699 AGTGTGGTTTTG
1 AGTGTGGTTTTG
*
33143711 AGTAT-GTTTTG
1 AGTGTGGTTTTG
33143722 A
1 A
33143723 TGATTTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 7 0.30
12 16 0.70
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (12 bp):
AGTGTGGTTTTG
Found at i:33154323 original size:451 final size:451
Alignment explanation
Indices: 33153470--33154369 Score: 1563
Period size: 451 Copynumber: 2.0 Consensus size: 451
33153460 TGAGGCAAAG
* *
33153470 CCTCTAGTACGTGGTCAAGCCACTTTCAGTACTTCCCCCATCAATAACCTAGTCCCATGCATCAG
1 CCTCCAGTACGTGGTCAAGCCACTTTCAGTACTTCCCCCATCAATAACCCAGTCCCATGCATCAG
* *
33153535 ATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTTAACCTTAACCC
66 ATAATAATAACATGGCATGCAGCAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTTAACCC
33153600 TAGGGGTATATCAGTAATTTTGCTCTTAGGAGTAAAACTGTAAACTTTCCACCTATAAAGGTATT
131 TAGGGGTATATCAGTAATTTTGCTCTTAGGAGTAAAACTGTAAACTTTCCACCTATAAAGGTATT
*
33153665 TCAGTAATTTTATCAGTTTTAAGGGTTCTCATGAATTTTACGGTCCTTACTAGCCCATTTGTCAT
196 TCAGTAATTTTATCAGTTTTAAGGGTTCTCATGAATGTTACGGTCCTTACTAGCCCATTTGTCAT
* *
33153730 CGTAGTAATTTATTTATCTCAATTTCACAATTTTAGCCATTGGGCCCTAAAACCCCTAATGGGCC
261 CGCAGTAATTTATTTATCTCAATTTCACAAGTTTAGCCATTGGGCCCTAAAACCCCTAATGGGCC
* * **
33153795 CTATAGTGTCCATTAGCAATTTAAGCCCATTTAATTCAAGTTTTATGACCAGTTTACTGGTTTAA
326 CTACAGTGTCCATTAGAAATTTAAGCCCATTTAATTCAAGTTTTATGACCAGTTTACCAGTTTAA
* * *
33153860 GCAGTTTCGATTCTACAGTCTAACAGAACATACTTATTGCCT-TT-TTTTTCATATATATATT
391 ACAGTGTCGATTCTACAGTATAACAGAACATACTTATTGCCTATTATTTTT-ATAT-TATATT
* *
33153921 CCTCCAGTACGTGGTCAAGCCACTTTCAGTACTTCCTCCATCAATAACCCAGTCCCATGCATTAG
1 CCTCCAGTACGTGGTCAAGCCACTTTCAGTACTTCCCCCATCAATAACCCAGTCCCATGCATCAG
*
33153986 ATAATAATAACATGGCATGCAGCAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTTAACCC
66 ATAATAATAACATGGCATGCAGCAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTTAACCC
*
33154051 TAGGGGTATATCAGTAATTTTGCT-TCTAGGAGTAAAGCTGTAAACTTTCCACCTATAAAGGTAT
131 TAGGGGTATATCAGTAATTTTGCTCT-TAGGAGTAAAACTGTAAACTTTCCACCTATAAAGGTAT
*
33154115 TTCAGTAATTTTATCAGTTTTAAGGGTTCTCATGAATGTTACGGTCCTTACTAGCCTATTTGTCA
195 TTCAGTAATTTTATCAGTTTTAAGGGTTCTCATGAATGTTACGGTCCTTACTAGCCCATTTGTCA
33154180 TCGCAGTAATTTATTTATCTCAATTTCACAAGTTTAGCCATTGGGCCCTAAAACCCCTAATGGGC
260 TCGCAGTAATTTATTTATCTCAATTTCACAAGTTTAGCCATTGGGCCCTAAAACCCCTAATGGGC
*
33154245 CCTACAGTGTCCATTAGAAATTTAAGCCCATTTAATTCAAGTTTTATGACTAGTTTACCAGTTTA
325 CCTACAGTGTCCATTAGAAATTTAAGCCCATTTAATTCAAGTTTTATGACCAGTTTACCAGTTTA
*
33154310 AACAGTGTCGATTCTACAGTATAATAGAACATACTTATTGCCTATTATTTTTATATTATA
390 AACAGTGTCGATTCTACAGTATAACAGAACATACTTATTGCCTATTATTTTTATATTATA
33154370 CATTTTATTA
Statistics
Matches: 425, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
450 1 0.00
451 413 0.97
452 6 0.01
453 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (451 bp):
CCTCCAGTACGTGGTCAAGCCACTTTCAGTACTTCCCCCATCAATAACCCAGTCCCATGCATCAG
ATAATAATAACATGGCATGCAGCAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTTAACCC
TAGGGGTATATCAGTAATTTTGCTCTTAGGAGTAAAACTGTAAACTTTCCACCTATAAAGGTATT
TCAGTAATTTTATCAGTTTTAAGGGTTCTCATGAATGTTACGGTCCTTACTAGCCCATTTGTCAT
CGCAGTAATTTATTTATCTCAATTTCACAAGTTTAGCCATTGGGCCCTAAAACCCCTAATGGGCC
CTACAGTGTCCATTAGAAATTTAAGCCCATTTAATTCAAGTTTTATGACCAGTTTACCAGTTTAA
ACAGTGTCGATTCTACAGTATAACAGAACATACTTATTGCCTATTATTTTTATATTATATT
Found at i:33162493 original size:18 final size:18
Alignment explanation
Indices: 33162464--33162522 Score: 70
Period size: 17 Copynumber: 3.4 Consensus size: 18
33162454 ACATGATTGG
33162464 ATTCAT-TTTTCAATTAA
1 ATTCATGTTTTCAATTAA
* **
33162481 ATTCATGTTTTC-AGTCG
1 ATTCATGTTTTCAATTAA
33162498 A-TCATGTTTTCAATTAA
1 ATTCATGTTTTCAATTAA
33162515 ATTCATGT
1 ATTCATGT
33162523 ACTTCATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
16 10 0.30
17 12 0.36
18 11 0.33
ACGTcount: A:0.29, C:0.14, G:0.08, T:0.49
Consensus pattern (18 bp):
ATTCATGTTTTCAATTAA
Found at i:33187196 original size:27 final size:27
Alignment explanation
Indices: 33187165--33187229 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
33187155 GATCACTAAA
* *
33187165 CACTTTGCTATGTTTGGCACACTATAT
1 CACTTTGCCATGATTGGCACACTATAT
*
33187192 CACTTTGCCATGATTGGCACACTTTAT
1 CACTTTGCCATGATTGGCACACTATAT
33187219 CACTTTGCCAT
1 CACTTTGCCAT
33187230 AGTTCAACTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (27 bp):
CACTTTGCCATGATTGGCACACTATAT
Found at i:33187400 original size:31 final size:31
Alignment explanation
Indices: 33187319--33187463 Score: 150
Period size: 31 Copynumber: 4.7 Consensus size: 31
33187309 CTTGTCACTT
* * *
33187319 GTAGCCGAAGCTACCACTATTCAC-AGATCAA
1 GTAGTCGAAGCTACCACTTTTCACTA-ATCAG
* * *
33187350 GTAG-CTAGAGCTGCCACTTTTCACTAATCCG
1 GTAGTCGA-AGCTACCACTTTTCACTAATCAG
* * *
33187381 ATAGTCGAAGCTACTACTTTTCACTCATCAG
1 GTAGTCGAAGCTACCACTTTTCACTAATCAG
* * *
33187412 GTAGCCGAAACTACCACTTTTCACTGATCAG
1 GTAGTCGAAGCTACCACTTTTCACTAATCAG
33187443 GTAGTCGAAGCTACCACTTTT
1 GTAGTCGAAGCTACCACTTTT
33187464 TACATTGTAC
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
30 2 0.02
31 88 0.95
32 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (31 bp):
GTAGTCGAAGCTACCACTTTTCACTAATCAG
Found at i:33187543 original size:33 final size:32
Alignment explanation
Indices: 33187469--33187571 Score: 127
Period size: 33 Copynumber: 3.2 Consensus size: 32
33187459 CTTTTTACAT
* *
33187469 TGTACACACAAGGCGTACATTTCCTTTTCAAG
1 TGTACACACAAAGTGTACATTTCCTTTTCAAG
* *
33187501 TGTACACACAAAGTGTACGTTTCCTTTTTAAG
1 TGTACACACAAAGTGTACATTTCCTTTTCAAG
*
33187533 CTGTACACACACAA-TGTACATTTCCTTTTCTAG
1 -TGTACACACA-AAGTGTACATTTCCTTTTCAAG
33187566 TTGTAC
1 -TGTAC
33187572 CTTTTAGGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
32 28 0.46
33 31 0.51
34 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (32 bp):
TGTACACACAAAGTGTACATTTCCTTTTCAAG
Found at i:33195244 original size:27 final size:27
Alignment explanation
Indices: 33195214--33195391 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
33195204 ATATCGAGTC
* *
33195214 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
33195241 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
33195268 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
33195296 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
33195323 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
33195350 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
33195377 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33195392 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33195353 original size:82 final size:81
Alignment explanation
Indices: 33195235--33195390 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33195225 TGCTATATAA
*
33195235 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33195300 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
33195317 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33195381 CACTTAGTGC
65 CACTTAGTGC
33195391 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33200987 original size:20 final size:20
Alignment explanation
Indices: 33200934--33200987 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
33200924 AACAGGGGTC
*
33200934 ACACGCCCATGTGACTTGTG
1 ACACGCCCATGTGGCTTGTG
*
33200954 ACACGCCCGTGTGGCTTGTG
1 ACACGCCCATGTGGCTTGTG
33200974 ACACGCCCATGTGG
1 ACACGCCCATGTGG
33200988 GCAGGCCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (20 bp):
ACACGCCCATGTGGCTTGTG
Found at i:33202852 original size:31 final size:32
Alignment explanation
Indices: 33202814--33202875 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
33202804 CTCGCTGCAA
* *
33202814 TCTGGTGGCTTCGCCAC-ATATATATATCTGT
1 TCTGGTGGCATAGCCACAATATATATATCTGT
*
33202845 TCTGGTGGCATAGCCACAATATCTATATCTG
1 TCTGGTGGCATAGCCACAATATATATATCTG
33202876 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (32 bp):
TCTGGTGGCATAGCCACAATATATATATCTGT
Found at i:33208752 original size:40 final size:40
Alignment explanation
Indices: 33208725--33208867 Score: 169
Period size: 40 Copynumber: 3.6 Consensus size: 40
33208715 TACTTGCTCG
33208725 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
* * *
33208765 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
* * * ** * * * *
33208805 AAAGCCTTCGGGACTTAGCCCGAAGCTAGTCACTAGCGCA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
*
33208845 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACATAGCCCGG
33208868 TTATCATCCA
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (40 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACC
Found at i:33210156 original size:11 final size:10
Alignment explanation
Indices: 33210126--33210160 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
33210116 ACATGAGAGC
33210126 CTTTCTTTTT
1 CTTTCTTTTT
*
33210136 TTTTCTTTTT
1 CTTTCTTTTT
33210146 CTTTCTCTTTT
1 CTTTCT-TTTT
33210157 CTTT
1 CTTT
33210161 TTTCATCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:33221518 original size:32 final size:32
Alignment explanation
Indices: 33221477--33221540 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
33221467 TGGCTTAATC
33221477 GAGTGATCATACATCAAACAAATGGATCTCCT
1 GAGTGATCATACATCAAACAAATGGATCTCCT
33221509 GAGTGATCATACATCAAACAAATGGATCTCCT
1 GAGTGATCATACATCAAACAAATGGATCTCCT
33221541 TACTCCCAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.25
Consensus pattern (32 bp):
GAGTGATCATACATCAAACAAATGGATCTCCT
Found at i:33221916 original size:20 final size:20
Alignment explanation
Indices: 33221891--33221929 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33221881 GGACTAAACC
*
33221891 GATAACTCACGAAATTTTTA
1 GATAACTCAAGAAATTTTTA
*
33221911 GATAACTTAAGAAATTTTT
1 GATAACTCAAGAAATTTTT
33221930 CAAAAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
GATAACTCAAGAAATTTTTA
Found at i:33225821 original size:17 final size:16
Alignment explanation
Indices: 33225797--33225847 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
33225787 CCCTTATTAA
33225797 AAAATAAAATAAAATT
1 AAAATAAAATAAAATT
*
33225813 AACAATAAAAAAAATATT
1 AA-AATAAAATAAA-ATT
*
33225831 AAAATGGAAATAAAATT
1 AAAAT-AAAATAAAATT
33225848 TTCAAAGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 2 0.07
17 16 0.55
18 11 0.38
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (16 bp):
AAAATAAAATAAAATT
Found at i:33232534 original size:43 final size:43
Alignment explanation
Indices: 33232363--33232535 Score: 183
Period size: 43 Copynumber: 4.0 Consensus size: 43
33232353 ACATAGGATT
* *
33232363 TCGATATGTT-ATTTCGTGTAAGACCACGTCTGGGACGTTGGAA
1 TCGATAT-TTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * * *
33232406 TTGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACGTTGGCA
* *
33232450 TC-ATATTTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGCA
* *
33232492 TCGATATTTGATTACATGTAAGACCACGTCTGGGGCGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
33232535 T
1 T
33232536 TATACGAGTT
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 32 0.30
43 44 0.41
44 30 0.28
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:33237512 original size:21 final size:21
Alignment explanation
Indices: 33237486--33237530 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
33237476 TGCATGGTCA
33237486 AATCTACATATATCAAGTATC
1 AATCTACATATATCAAGTATC
33237507 AATCTACATATATCAAGTATC
1 AATCTACATATATCAAGTATC
33237528 AAT
1 AAT
33237531 TCCATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.18, G:0.04, T:0.33
Consensus pattern (21 bp):
AATCTACATATATCAAGTATC
Found at i:33254158 original size:28 final size:28
Alignment explanation
Indices: 33254101--33254160 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
33254091 ATAGACATGC
*
33254101 ATATGGCCCACTAGGCCCAATCTCATTT
1 ATATGGCCCACTAGGCCCAATCACATTT
*
33254129 ATATGGCCCA-TCCGGCCCAAATCACA-TT
1 ATATGGCCCACT-AGGCCC-AATCACATTT
33254157 ATAT
1 ATAT
33254161 TCATGCTCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 1 0.04
28 21 0.75
29 6 0.21
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTT
Found at i:33261270 original size:25 final size:25
Alignment explanation
Indices: 33261239--33261308 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
33261229 GCTGTAAACA
* *
33261239 GTAAGCTCCTCTGAGCTGAATAACG
1 GTAAGCTCATATGAGCTGAATAACG
* *
33261264 GTAAGCTCATATGAGCTGAGTATCG
1 GTAAGCTCATATGAGCTGAATAACG
* *
33261289 ATAAGCTCATAAGAGCTGAA
1 GTAAGCTCATATGAGCTGAA
33261309 ATCCGTAACC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (25 bp):
GTAAGCTCATATGAGCTGAATAACG
Found at i:33263925 original size:24 final size:22
Alignment explanation
Indices: 33263898--33263959 Score: 52
Period size: 24 Copynumber: 2.6 Consensus size: 22
33263888 ATTTTTCTGT
* *
33263898 TTTGAATTTTGAGTTCGAATCAA
1 TTTGAATTTTGAATTCAAAT-AA
**
33263921 GTTTGGTTTTTGAATTCAAATAA
1 -TTTGAATTTTGAATTCAAATAA
33263944 TTTGAATAATTTGAAT
1 TTTGAAT--TTTGAAT
33263960 AAACCGAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
22 5 0.17
23 2 0.07
24 23 0.77
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.47
Consensus pattern (22 bp):
TTTGAATTTTGAATTCAAATAA
Found at i:33264045 original size:19 final size:20
Alignment explanation
Indices: 33264003--33264047 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
33263993 TTACACAAAA
* **
33264003 CTCCCAAACTTCTTTACTTT
1 CTCCCAAAATTCTTTACTAC
33264023 CTCCCAAAATT-TTTACTAC
1 CTCCCAAAATTCTTTACTAC
33264042 CTCCCA
1 CTCCCA
33264048 CTTTTCCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (20 bp):
CTCCCAAAATTCTTTACTAC
Found at i:33275370 original size:30 final size:29
Alignment explanation
Indices: 33275336--33275396 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
33275326 AAACGGAAGT
33275336 TTTGGCACTAAGTGTGAGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTT-AACTAGC
*
33275366 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAACTAGC
33275395 TT
1 TT
33275397 CGACTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGAGATTTAACTAGC
Found at i:33281110 original size:27 final size:27
Alignment explanation
Indices: 33281071--33281248 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
33281061 ACATTGAGCC
* * * *
33281071 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
33281098 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
33281125 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
33281153 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33281180 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
33281207 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
33281234 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
33281249 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33281210 original size:82 final size:81
Alignment explanation
Indices: 33281092--33281247 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
33281082 TGCTATATAA
* * * **
33281092 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
33281157 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33281174 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
33281238 CCCTTAGTGC
65 CACTTAGTGC
33281248 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33304182 original size:19 final size:19
Alignment explanation
Indices: 33304158--33304197 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
33304148 TGAAAATGTG
33304158 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTATAAATT
*
33304177 TAAGTTATGCCTATGAATT
1 TAAGTTATGCCTATAAATT
33304196 TA
1 TA
33304198 TGATGACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (19 bp):
TAAGTTATGCCTATAAATT
Found at i:33309466 original size:30 final size:30
Alignment explanation
Indices: 33309432--33309492 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33309422 TCCTTAACTC
33309432 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
33309462 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
33309492 A
1 A
33309493 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33310402 original size:40 final size:40
Alignment explanation
Indices: 33310304--33310451 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 40
33310294 TGGGCTATTA
* * * * *
33310304 CACACTATGTGCCAATACATAGTCGAAGCTATTTTAATCTCG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTCAA-ATCG
*
33310346 CACACTACGTGCCATACATAGCCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
* * *
33310386 CACACTAAGTGTCATACATAGCCGAAGTTATCTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
* *
33310426 CACACTAAGTGCCGTACATAACCGAA
1 CACACTAAGTGCCATACATAGCCGAA
33310452 TTGTCGTGAA
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 62 0.66
41 20 0.21
42 12 0.13
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCG
Found at i:33325495 original size:39 final size:39
Alignment explanation
Indices: 33325452--33325559 Score: 164
Period size: 39 Copynumber: 2.8 Consensus size: 39
33325442 CCGGACATAT
* * *
33325452 TTCCAGCACGTAGCCTGCGGACCTTAATTCC-AGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGA-ATATAA
33325491 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAA
*
33325530 TTCCAGCACATAGCCAGCGGACCCTAAGTC
1 TTCCAGCACATAGCCTGCGGACCCTAAGTC
33325560 TTGATATACA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
39 63 0.98
40 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGAATATAA
Found at i:33327517 original size:21 final size:20
Alignment explanation
Indices: 33327478--33327517 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
33327468 TTTGTTCTTC
*
33327478 TTTTCTTATTTCAATTAATA
1 TTTTCTTATTTCAAATAATA
*
33327498 TTTTTTTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
33327518 GCAAATTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTCTTATTTCAAATAATA
Found at i:33330695 original size:14 final size:15
Alignment explanation
Indices: 33330667--33330695 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33330657 CAGTTAACTA
33330667 TACTTTAGTTACTTT
1 TACTTTAGTTACTTT
33330682 TACTTTAG-TACTTT
1 TACTTTAGTTACTTT
33330696 AGTAAAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (15 bp):
TACTTTAGTTACTTT
Found at i:33333645 original size:55 final size:54
Alignment explanation
Indices: 33333533--33333723 Score: 226
Period size: 55 Copynumber: 3.5 Consensus size: 54
33333523 AACTTACCAT
* * * * * * *
33333533 TGCCATGTCTTGACATGGTTTTACGTGGT-ATCCTTACCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGA-CCTTTCCTTATAGAACTCATCAA
33333586 TGCCATGCCTTGGCATGGTCTTACATGA-GACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACCTTT-CCTTATAG-AACTCATCAA
* * ** *
33333641 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACCTTTCCTTATAGAACTCATCAA
33333695 TGCCATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGGCATGGTCTTACATGAT
33333724 ATCCTTATCT
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 4 0.03
53 30 0.25
54 37 0.31
55 43 0.36
56 5 0.04
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGACCTTTCCTTATAGAACTCATCAA
Found at i:33333718 original size:54 final size:54
Alignment explanation
Indices: 33333512--33333729 Score: 251
Period size: 54 Copynumber: 4.0 Consensus size: 54
33333502 TCGGGAACCT
* * * * * * * *
33333512 TTTCCTTTTTGAACTTACCATTGCCATGTCTTGACATGGTTTTACGTGGTATCC
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * *
33333566 TTACCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGAGA-CC
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * *
33333618 TTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCC
1 TTT-CCTTATAG-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
* * *
33333674 TTTCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC
1 TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
33333728 TT
1 TT
33333730 ATCTTACCAA
Statistics
Matches: 140, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 39 0.28
54 49 0.35
55 43 0.31
56 5 0.04
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
TTTCCTTATAGAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC
Found at i:33333762 original size:47 final size:47
Alignment explanation
Indices: 33333708--33333829 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
33333698 CATGCCTTGG
*
33333708 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
* * *
33333755 CATGGTCTTACATGGTATCCTTGTCTTACGAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
33333802 CATGGTCTTACATGATATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
33333830 GTGCCAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATATTCCAAA
Found at i:33341072 original size:40 final size:40
Alignment explanation
Indices: 33341039--33341230 Score: 269
Period size: 40 Copynumber: 4.8 Consensus size: 40
33341029 GGATATAACT
* * *
33341039 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
33341079 ACTCGCACCAATGCCTTCGGGACTTAGCTCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
33341119 ACTTGCACAAATGCCTACGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
33341159 ACTCACACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
33341199 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
33341231 TTATCATCCA
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:33349256 original size:40 final size:40
Alignment explanation
Indices: 33349079--33349255 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
33349069 AAGCCAAGTA
* * * * *
33349079 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
33349118 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
33349158 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
33349198 CCTTTGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33349238 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
33349256 ATTATCATCC
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 15 0.12
40 106 0.88
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33354101 original size:73 final size:73
Alignment explanation
Indices: 33353972--33354108 Score: 195
Period size: 73 Copynumber: 1.9 Consensus size: 73
33353962 TGTGGAATGT
* * * * *
33353972 TATCGACTGGCTCGCTAGAGTGGCACCGTGACAATGGTCTATTGACCTTATGGAGTGACACCACA
1 TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCTTATAGAGTGACACCACA
33354037 ATGACAAC
66 ATGACAAC
* *
33354045 TATCGACTAGCTCACTAGAGCGACACTGTGACGATGGTCTATTGA-CTCTATAGAGTGACACCAC
1 TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCT-TATAGAGTGACACCAC
33354109 GATGGTGGTT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 2 0.04
73 54 0.96
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (73 bp):
TATCGACTAGCTCACTAGAGCGACACCGTGACAATGGTCTATTGACCTTATAGAGTGACACCACA
ATGACAAC
Found at i:33361677 original size:43 final size:43
Alignment explanation
Indices: 33361515--33361670 Score: 176
Period size: 42 Copynumber: 3.6 Consensus size: 43
33361505 CATAGGATTC
* ** *
33361515 CGATATGTGATTTTGTGTAAGACCACGTTTGGGACATTGGCAT
1 CGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
*
33361558 C-A-ATTTGATATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATTTG--A-TTACGTGTAAGACCACGTCTGGGACATTGGCAT
* *
33361602 TG-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACATTGGCAT
1 CGATATTTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCAT
*
33361644 CGATATTTGATTACATGTAAGACCACG
1 CGATATTTGATTACGTGTAAGACCACG
33361671 AATGGGATGT
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
41 4 0.04
42 32 0.34
43 23 0.24
44 30 0.32
45 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:33373441 original size:39 final size:39
Alignment explanation
Indices: 33373386--33373529 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
33373376 CCAACATAAT
*
33373386 TGCCTTCGGGACTTAGCCCAGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
33373425 TGCCTTCGGTATTTAGCTCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
33373464 TGCCTCCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
33373503 TGCCTTCGGGACTTAGACCGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
33373530 ATCTCACACA
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:33376367 original size:27 final size:27
Alignment explanation
Indices: 33376328--33376505 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
33376318 ACATTGAGCC
* * * *
33376328 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
33376355 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
33376382 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
33376410 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33376437 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
33376464 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
33376491 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
33376506 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33376467 original size:82 final size:81
Alignment explanation
Indices: 33376349--33376504 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
33376339 TGCTATATAA
* * * **
33376349 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
33376414 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33376431 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
33376495 CCCTTAGTGC
65 CACTTAGTGC
33376505 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33381519 original size:27 final size:26
Alignment explanation
Indices: 33381489--33381692 Score: 194
Period size: 27 Copynumber: 7.5 Consensus size: 26
33381479 AAATTGTACA
*
33381489 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* * *
33381516 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTG
* *
33381543 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
33381570 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
33381597 GCACTAAGTGTGCGAGTCTGACTATGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
33381625 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
33381652 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
33381679 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33381693 GGCTCAATAT
Statistics
Matches: 156, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 128 0.82
28 27 0.17
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:33381549 original size:54 final size:53
Alignment explanation
Indices: 33381489--33381692 Score: 219
Period size: 54 Copynumber: 3.8 Consensus size: 53
33381479 AAATTGTACA
* *
33381489 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * ** *
33381543 GCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
33381597 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
* * * *
33381652 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTTGCACTAAGTGTGCG
33381693 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTTGCACTAAGTGTGCGAATTGAATATGTG
Found at i:33381683 original size:109 final size:108
Alignment explanation
Indices: 33381489--33381692 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
33381479 AAATTGTACA
* * * *
33381489 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
33381554 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
33381597 GCACTAAGTGTGCGAGTCTGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
33381662 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
33381693 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:33389054 original size:27 final size:27
Alignment explanation
Indices: 33389015--33389192 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
33389005 ACATTGAGCC
* * * *
33389015 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
33389042 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
**
33389069 CGCACACTTAGTGCTACATAGTCAGGCT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
33389097 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
33389124 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
33389151 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
33389178 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
33389193 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:33389154 original size:82 final size:81
Alignment explanation
Indices: 33389036--33389191 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
33389026 TGCTATATAA
* * * **
33389036 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGGCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
33389101 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
33389118 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
33389182 CCCTTAGTGC
65 CACTTAGTGC
33389192 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33391638 original size:17 final size:18
Alignment explanation
Indices: 33391609--33391648 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
33391599 TTTTAGCTCG
33391609 ATTTTTGATAATTTCTAT
1 ATTTTTGATAATTTCTAT
33391627 ATTTTTGA-AATTTCTAT
1 ATTTTTGATAATTTCTAT
*
33391644 GTTTT
1 ATTTT
33391649 GAGATGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (18 bp):
ATTTTTGATAATTTCTAT
Found at i:33392380 original size:42 final size:42
Alignment explanation
Indices: 33392270--33392434 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 42
33392260 TTCCGATATG
* *
33392270 TGATTTCGTGTAAGTCCAC-ATCTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACGTTGGCATCGTATT
* *
33392311 TGATAGTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATT
1 TGAT--TT-CGTGTAAGACCCTGTCTGGGACGTTGGCATCGTATT
* *
33392356 TGATTTTGTGTAAGACCCTGTCTGGGA-TTGTGGCATCGATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGACGT-TGGCATCG-TATT
* *
33392399 TGATTACATGTAAGACCAC-GTCTGGGACGTTGGCAT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACGTTGGCAT
33392435 TGTACGAGCT
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
41 5 0.05
42 27 0.26
43 36 0.35
44 29 0.28
45 7 0.07
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACGTTGGCATCGTATT
Found at i:33407040 original size:40 final size:40
Alignment explanation
Indices: 33406983--33407240 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
33406973 CAGATGATAA
* * *
33406983 CCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
33407023 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33407063 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33407103 CCGGGCTAAGTCCCGAAGGGATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33407143 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33407183 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
33407223 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
33407241 TACTTGGTTT
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 17 0.08
40 183 0.91
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:33413711 original size:40 final size:40
Alignment explanation
Indices: 33413656--33413876 Score: 295
Period size: 40 Copynumber: 5.5 Consensus size: 40
33413646 TATTCGAATG
* * *
33413656 ATATCCAGGCTAAGTCTCGAAGGCATTTTTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
33413696 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
* *
33413736 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CT
33413776 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* * *
33413816 ATATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
* *
33413856 ATATCC-GGCTAAATCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
33413877 ATGCTTGGGT
Statistics
Matches: 162, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 146 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
Found at i:33425653 original size:40 final size:40
Alignment explanation
Indices: 33425590--33425783 Score: 352
Period size: 40 Copynumber: 4.8 Consensus size: 40
33425580 TATCTAGCAC
* * *
33425590 AGCCTGCAGGTCTTTAAGGCCGGATACAATTCCAGCATGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
33425630 AGCTTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
33425670 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
33425710 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
33425750 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
33425784 CATCAAATAA
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:33432361 original size:27 final size:27
Alignment explanation
Indices: 33432307--33432364 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
33432297 AAACATAGAA
* * *
33432307 TATTTTATTTTTATTTATTTATTTATT
1 TATTTTATTTTGATTTATATATTAATT
33432334 TATTTTATTTTGATTT-TATATTAAATT
1 TATTTTATTTTGATTTATATATT-AATT
33432361 TATT
1 TATT
33432365 ACGGCCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (27 bp):
TATTTTATTTTGATTTATATATTAATT
Found at i:33434960 original size:37 final size:37
Alignment explanation
Indices: 33434910--33434988 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33434900 TTATAACGAA
* *
33434910 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
33434947 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33434984 GTCTT
1 GTCTT
33434989 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33435185 original size:47 final size:47
Alignment explanation
Indices: 33435107--33435378 Score: 420
Period size: 47 Copynumber: 5.7 Consensus size: 47
33435097 CCCTTCGGGA
* * * * * *
33435107 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33435154 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33435201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33435248 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33435297 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33435344 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
33435379 AGAATTCTAA
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.77
49 47 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33435304 original size:96 final size:96
Alignment explanation
Indices: 33435107--33435357 Score: 416
Period size: 96 Copynumber: 2.6 Consensus size: 96
33435097 CCCTTCGGGA
* * * * * * * *
33435107 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
33435170 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
33435201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
33435266 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
33435297 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
33435358 GCATGTTCAC
Statistics
Matches: 147, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 47 0.32
96 100 0.68
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33435376 original size:143 final size:141
Alignment explanation
Indices: 33435107--33435378 Score: 429
Period size: 143 Copynumber: 1.9 Consensus size: 141
33435097 CCCTTCGGGA
* * * *
33435107 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
33435172 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
33435237 GGCCATTAGGC
131 GGCCATTAGGC
* * *
33435248 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
33435313 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-TGTTCACATCCATCAC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATCCATCAC
33435377 AT
128 AT
33435379 AGAATTCTAA
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
141 10 0.08
142 2 0.02
143 107 0.90
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
GGCCATTAGGC
Found at i:33439071 original size:40 final size:40
Alignment explanation
Indices: 33439027--33439236 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
33439017 TCTTCGAGGT
* * *
33439027 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
* *
33439067 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
*
33439107 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
* * *
33439147 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
* * * * *
33439187 TTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGAC
1 TTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCCTCGGAAC
33439227 TTAGCCCGGA
1 TTAGCCCGGA
33439237 CATCATTCAA
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 138 0.91
41 7 0.05
42 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAAC
Found at i:33439119 original size:80 final size:80
Alignment explanation
Indices: 33439027--33439236 Score: 298
Period size: 80 Copynumber: 2.6 Consensus size: 80
33439017 TCTTCGAGGT
* * *
33439027 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
33439092 AATGCTCCTCGGGAC
66 AATGCTCCTCGGAAC
* *
33439107 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACATTACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
*
33439172 AATGCTCTTCGGAAC
66 AATGCTCCTCGGAAC
* * *
33439187 TTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
33439237 CATCATTCAA
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
80 103 0.88
81 8 0.07
82 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACG
AATGCTCCTCGGAAC
Found at i:33439583 original size:29 final size:29
Alignment explanation
Indices: 33439544--33439622 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
33439534 CTTAATAATC
*
33439544 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
33439574 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
33439603 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
33439623 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:33439665 original size:43 final size:43
Alignment explanation
Indices: 33439604--33439706 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
33439594 TGCATTTCAA
33439604 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33439647 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
33439690 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
33439707 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:33441619 original size:37 final size:37
Alignment explanation
Indices: 33441569--33441647 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
33441559 TTATTACGAA
* *
33441569 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
33441606 GTCTTACCCGGACAAAATTCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
33441643 GTCTT
1 GTCTT
33441648 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:33441882 original size:47 final size:47
Alignment explanation
Indices: 33441765--33441986 Score: 322
Period size: 47 Copynumber: 4.7 Consensus size: 47
33441755 CCCTTCGGGA
* * * * * *
33441765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33441811 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33441858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33441905 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33441952 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
33441987 AGAATCCTAA
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
46 37 0.23
47 123 0.77
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33473436 original size:48 final size:48
Alignment explanation
Indices: 33473335--33473586 Score: 231
Period size: 48 Copynumber: 5.2 Consensus size: 48
33473325 GTGAGTTGCT
* * * * * * *
33473335 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATGTCGA-GCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGCC
* * *
33473383 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCATGGCC
* *
33473431 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATGGCC
* * * * * **
33473479 GATGCCATATCCCACACATGGTCTTACACTGGCTCTCACAACATCCCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCC
* * * * * *
33473527 GATGCCATGTTCCAAATATGGTCTTACACTTGCTCTAATATCGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCC
33473575 GATGCCATGTCC
1 GATGCCATGTCC
33473587 TAGATGTGGC
Statistics
Matches: 164, Mismatches: 35, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 158 0.96
49 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATGGCC
Found at i:33473568 original size:96 final size:95
Alignment explanation
Indices: 33473335--33473582 Score: 268
Period size: 96 Copynumber: 2.6 Consensus size: 95
33473325 GTGAGTTGCT
* * * *
33473335 GATGCCATGTTCCAAACATGGTCTTACA-TTGGCTCACATGTCGA-GCCCAATGCCATGTCCCAG
1 GATGCCATGTTCCAAACATGGTCTTACACTT-GCTCACATATC-ATG-CCGATGCCATATCCCAC
* ** ***
33473398 ACATGGTCTTACACTAGCTCTCATAATGTGGTC
63 ACATGGTCTTACACTAGCTCTCACAACATCCCC
* * * *
33473431 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATATCCCACAC
1 GATGCCATGTTCCAAACATGGTCTTACACTTGCTCACATATC-ATGCCGATGCCATATCCCACAC
*
33473496 ATGGTCTTACACTGGCTCTCACAACATCCCC
65 ATGGTCTTACACTAGCTCTCACAACATCCCC
* *
33473527 GATGCCATGTTCCAAATATGGTCTTACACTTGCTCTA-ATATCGTGGCCGATGCCAT
1 GATGCCATGTTCCAAACATGGTCTTACACTTGCTC-ACATATCAT-GCCGATGCCAT
33473583 GTCCTAGATG
Statistics
Matches: 126, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
95 1 0.01
96 122 0.97
97 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTTCCAAACATGGTCTTACACTTGCTCACATATCATGCCGATGCCATATCCCACACA
TGGTCTTACACTAGCTCTCACAACATCCCC
Found at i:33478036 original size:47 final size:46
Alignment explanation
Indices: 33477913--33478036 Score: 146
Period size: 46 Copynumber: 2.7 Consensus size: 46
33477903 TGTAACCTGC
* * *
33477913 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCCTTTACAT
*
33477959 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCCT--TTACAT
*
33478009 -C-TTA-CGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
33478037 TTTGGAACTC
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
46 36 0.51
47 23 0.33
48 5 0.07
49 1 0.01
50 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCCTTTACAT
Found at i:33478513 original size:30 final size:30
Alignment explanation
Indices: 33478468--33478527 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
33478458 ATTTAATACG
33478468 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
33478498 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
33478528 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:33484765 original size:27 final size:27
Alignment explanation
Indices: 33484735--33484908 Score: 152
Period size: 27 Copynumber: 6.4 Consensus size: 27
33484725 AAATTGTACA
* * *
33484735 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
33484762 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
33484789 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
33484816 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
33484844 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
33484871 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
33484898 GCACTGAGTGT
1 GCACTAAGTGT
33484909 ACGGGCTCAA
Statistics
Matches: 119, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 96 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:33484848 original size:82 final size:81
Alignment explanation
Indices: 33484735--33484890 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
33484725 AAATTGTACA
** * * *
33484735 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
33484799 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
33484816 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
33484881 TGCGAGTTGA
65 TGCGAATTGA
33484891 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33484902 original size:82 final size:81
Alignment explanation
Indices: 33484731--33484908 Score: 187
Period size: 82 Copynumber: 2.2 Consensus size: 81
33484721 GATTAAATTG
* ** * * *
33484731 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33484796 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33484812 TGCGGCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33484876 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33484894 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
33484909 ACGGGCTCAA
Statistics
Matches: 77, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.22
82 60 0.78
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33492756 original size:27 final size:27
Alignment explanation
Indices: 33492726--33492902 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
33492716 AAATTGTACA
* * *
33492726 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
33492753 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
33492780 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
33492807 GCACTAAGTGTGCGAGCCTGACTATGTA
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
33492835 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
33492862 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
33492889 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33492903 GGTTCAATGT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.81
28 23 0.19
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:33492839 original size:82 final size:81
Alignment explanation
Indices: 33492726--33492881 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
33492716 AAATTGTACA
** * * *
33492726 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
33492790 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
33492807 GCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
33492872 TGCGAGTTGA
65 TGCGAATTGA
33492882 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33492893 original size:82 final size:81
Alignment explanation
Indices: 33492722--33492902 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
33492712 GATTAAATTG
* ** * * *
33492722 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33492787 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33492803 TGCGGCACTAAGTGTGCGAGCCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-CCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33492867 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33492885 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33492903 GGTTCAATGT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGACCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33496357 original size:48 final size:48
Alignment explanation
Indices: 33496301--33496630 Score: 240
Period size: 48 Copynumber: 6.9 Consensus size: 48
33496291 GGTGAGTTGC
* *
33496301 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGAT
* * * * ** * * * *
33496349 TGATGCCATGTCCCAGACATAGTTTTACACTAACTCTCGTCTCAATG-T
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGA-GAT
* * * *
33496397 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT-ATCGAGAT
* * * ** * *
33496445 CGATGCCATGTCCCAAAAATGGTCCTACACTAGCGGACATATCAATAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGAT
* * *
33496493 CGATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCACAACATC--G-C
1 CGATGCCATGTCCCAAACATGGTCTTACACTGG--CTCAC-ATATCGAGAT
* * * * * *
33496541 CGATGTCATGTTCCAAACATGGTCTTACATTGGCTCTCATATCGTG-G
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGAT
* * ** *
33496588 CAATGCCATGTCCCAGATGTGGTCTTACACTGGCACACATATC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATC
33496631 ACCCAAATGT
Statistics
Matches: 216, Mismatches: 57, Indels: 19
0.74 0.20 0.07
Matches are distributed among these distances:
45 4 0.02
46 4 0.02
47 38 0.18
48 161 0.75
49 2 0.01
50 3 0.01
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGAT
Found at i:33514540 original size:42 final size:42
Alignment explanation
Indices: 33514494--33514575 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
33514484 CGATATCTCG
* * *
33514494 TATCGATGCCATGCCCCAGACATGGTCTTACATGAAATCAAA
1 TATCGATGCCATACCCCAAACATGGTCTTAAATGAAATCAAA
* * *
33514536 TATCGATGTCATATCCCAAATATGGTCTTAAATGAAATCA
1 TATCGATGCCATACCCCAAACATGGTCTTAAATGAAATCA
33514576 CACATAACCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (42 bp):
TATCGATGCCATACCCCAAACATGGTCTTAAATGAAATCAAA
Found at i:33530807 original size:22 final size:21
Alignment explanation
Indices: 33530780--33530834 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
33530770 TAATTAACTT
33530780 ATTTCTTGATTTTTAAATTTTA
1 ATTTCTTGATTTTTAAA-TTTA
* *
33530802 ATTTCTTAATTTTGAAATTTA
1 ATTTCTTGATTTTTAAATTTA
33530823 A-TT-TTGATTTTT
1 ATTTCTTGATTTTT
33530835 TAAAAATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 7 0.24
20 2 0.07
21 5 0.17
22 15 0.52
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTCTTGATTTTTAAATTTA
Found at i:33530890 original size:19 final size:19
Alignment explanation
Indices: 33530788--33530904 Score: 78
Period size: 19 Copynumber: 5.9 Consensus size: 19
33530778 TTATTTCTTG
*
33530788 ATTTTTAAATTTTAATTTCTT
1 ATTTTTAAA-ATTAATTT-TT
* * *
33530809 AATTTTGAAATTTAATTTTG
1 -ATTTTTAAAATTAATTTTT
*
33530829 ATTTTTTAAAAATAA-TTTT
1 A-TTTTTAAAATTAATTTTT
*
33530848 A-TTTTAAACTATAATTAATTT
1 ATTTTTAAAAT-TAATT--TTT
*
33530869 ATTTCTT-TAATTAATTTTT
1 ATTT-TTAAAATTAATTTTT
33530888 ATTTTTAAAATTAATTT
1 ATTTTTAAAATTAATTT
33530905 CAGTTTAATT
Statistics
Matches: 76, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
17 7 0.09
18 5 0.07
19 22 0.29
20 11 0.14
21 17 0.22
22 12 0.16
23 2 0.03
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.60
Consensus pattern (19 bp):
ATTTTTAAAATTAATTTTT
Found at i:33530939 original size:18 final size:18
Alignment explanation
Indices: 33530916--33531048 Score: 105
Period size: 18 Copynumber: 7.6 Consensus size: 18
33530906 AGTTTAATTC
*
33530916 ATTTAATTTTACAACCAT
1 ATTTAATTTTAAAACCAT
* * ** *
33530934 ATTTAAATCTAAAATTAA
1 ATTTAATTTTAAAACCAT
33530952 ATATT--TTTTAAAACCAT
1 AT-TTAATTTTAAAACCAT
*
33530969 ATTTAATTTTACAACCAT
1 ATTTAATTTTAAAACCAT
* *
33530987 ATTGAATTTTAAAA--TT
1 ATTTAATTTTAAAACCAT
**
33531003 AAAT-ATTTTAAAACCAT
1 ATTTAATTTTAAAACCAT
* *
33531020 ATTTAATTTTAAAGCAAT
1 ATTTAATTTTAAAACCAT
33531038 ATTTAATTTTA
1 ATTTAATTTTA
33531049 TTTTATTTTA
Statistics
Matches: 86, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
15 9 0.10
16 4 0.05
17 12 0.14
18 59 0.69
19 2 0.02
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTAATTTTAAAACCAT
Found at i:33530982 original size:53 final size:51
Alignment explanation
Indices: 33530916--33531043 Score: 186
Period size: 53 Copynumber: 2.5 Consensus size: 51
33530906 AGTTTAATTC
33530916 ATTTAATTTTACAACCATATTTAAATCTAAAATTAAATATTTTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAAATCTAAAATTAAATA--TTTTAAAACCAT
* * *
33530969 ATTTAATTTTACAACCATATTGAATTTTAAAATTAAATATTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAAATCTAAAATTAAATATTTTAAAACCAT
*
33531020 ATTTAATTTTA-AAGCAATATTTAA
1 ATTTAATTTTACAA-CCATATTTAA
33531044 TTTTATTTTA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
50 2 0.03
51 31 0.45
53 36 0.52
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (51 bp):
ATTTAATTTTACAACCATATTTAAATCTAAAATTAAATATTTTAAAACCAT
Found at i:33531040 original size:51 final size:52
Alignment explanation
Indices: 33530916--33531048 Score: 198
Period size: 51 Copynumber: 2.6 Consensus size: 52
33530906 AGTTTAATTC
* *
33530916 ATTTAATTTTACAACCATATTTAAATCTAAAATTAAATATTTTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATA-TTTTTAAAACCAT
*
33530969 ATTTAATTTTACAACCATATTGAATTTTAAAATTAAATA-TTTTAAAACCAT
1 ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATATTTTTAAAACCAT
*
33531020 ATTTAATTTTA-AAGCAATATTTAATTTTA
1 ATTTAATTTTACAA-CCATATTTAATTTTA
33531049 TTTTATTTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 2 0.03
51 36 0.49
53 36 0.49
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (52 bp):
ATTTAATTTTACAACCATATTTAATTTTAAAATTAAATATTTTTAAAACCAT
Found at i:33538061 original size:37 final size:37
Alignment explanation
Indices: 33538011--33538089 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
33538001 TTATTACGAA
* *
33538011 GTCTTACCAGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCAGGACAAAATTC-CCACACGAAGTCATCGG
* *
33538048 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATTCCCACACGAAGTCATCGG
33538085 GTCTT
1 GTCTT
33538090 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATTCCCACACGAAGTCATCGG
Done.