Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 104 of 320
Found at i:33538286 original size:47 final size:47
Alignment explanation
Indices: 33538208--33538679 Score: 773
Period size: 47 Copynumber: 10.0 Consensus size: 47
33538198 CCCTTCGGGA
* * * * * * *
33538208 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
33538255 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33538302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33538349 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33538396 CTTATCACATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33538443 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33538490 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33538537 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33538584 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33538633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33538680 TTTACTATCA
Statistics
Matches: 400, Mismatches: 23, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 354 0.88
49 46 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33548939 original size:30 final size:30
Alignment explanation
Indices: 33548905--33548962 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
33548895 TCATTAACTC
33548905 AAACTTTTGCAAAATT-ACAATTTTGCCCCT
1 AAACTTTTGC-AAATTCACAATTTTGCCCCT
* *
33548935 AAACTTTTGCATATTCACACTTTTGCCC
1 AAACTTTTGCAAATTCACAATTTTGCCC
33548963 TTAGGCTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAATTCACAATTTTGCCCCT
Found at i:33560909 original size:49 final size:49
Alignment explanation
Indices: 33560837--33561025 Score: 227
Period size: 49 Copynumber: 3.8 Consensus size: 49
33560827 TGAGGTCACG
* * *
33560837 TGTGTAGTATTAAGTGCAGGCTACTACGTGTACCGGATAGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGTTGGTCGCA
** * * * * * *
33560886 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAGT-TGGTCGCA
*
33560937 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TAGTTGGTCGCA
*
33560986 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAG
33561026 CTTCAGCTAC
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
48 2 0.02
49 71 0.61
50 5 0.04
51 38 0.33
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGTTGGTCGCA
Found at i:33561005 original size:100 final size:100
Alignment explanation
Indices: 33560832--33561019 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
33560822 TATTGTGAGG
* *
33560832 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCGGATAGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACT
33560897 AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
33560932 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTGGTCGCATGTGTAGTAC
*
33560996 TAAGTGCAGGCTACTATGCGTACC
65 TAAGTGCAGGCTACTATACGTACC
33561020 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
100 82 0.98
101 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
Found at i:33563489 original size:19 final size:19
Alignment explanation
Indices: 33563443--33563489 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
33563433 ACATAACTAA
*
33563443 TGACTTTCCATACATAAGT
1 TGACTTTCTATACATAAGT
33563462 TGACTTTCTATACATAAGT
1 TGACTTTCTATACATAAGT
*
33563481 TGTCTTTCT
1 TGACTTTCT
33563490 TCTTAAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TGACTTTCTATACATAAGT
Found at i:33564716 original size:38 final size:38
Alignment explanation
Indices: 33564674--33564752 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
33564664 TACGTGGACT
33564674 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
1 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
33564712 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
1 TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
33564750 TCA
1 TCA
33564753 CCAATTATAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (38 bp):
TCAAATCAGAATCTATCTATTCATGTTGTCATGATTAG
Found at i:33567050 original size:14 final size:15
Alignment explanation
Indices: 33567015--33567052 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
33567005 AAAAGTTTAA
**
33567015 AATTTAATTTTTATT
1 AATTTAATTTTTAGG
33567030 AATTTAATTTTTAGG
1 AATTTAATTTTTAGG
33567045 AA-TTAATT
1 AATTTAATT
33567053 ATAATAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (15 bp):
AATTTAATTTTTAGG
Found at i:33571925 original size:18 final size:18
Alignment explanation
Indices: 33571904--33571938 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33571894 GTATCAGAAC
*
33571904 AGGAACCTGTGTCAAAAT
1 AGGAACCTGAGTCAAAAT
33571922 AGGAACCTGAGTCAAAA
1 AGGAACCTGAGTCAAAA
33571939 CAGATTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (18 bp):
AGGAACCTGAGTCAAAAT
Found at i:33588887 original size:12 final size:12
Alignment explanation
Indices: 33588856--33588936 Score: 92
Period size: 12 Copynumber: 6.8 Consensus size: 12
33588846 CATGTGGTAT
* *
33588856 GCCCATGTCTCA
1 GCCCGTGTCTTA
*
33588868 GGCCGTGT-TCTA
1 GCCCGTGTCT-TA
33588880 GCCCGTGTCTTA
1 GCCCGTGTCTTA
33588892 GCCCGTGTCTTA
1 GCCCGTGTCTTA
* * *
33588904 GCCTGTGCCCTA
1 GCCCGTGTCTTA
33588916 GCCCGTGTCTTA
1 GCCCGTGTCTTA
33588928 GCCCGTGTC
1 GCCCGTGTC
33588937 CTTACTCATG
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
11 1 0.02
12 55 0.96
13 1 0.02
ACGTcount: A:0.09, C:0.36, G:0.26, T:0.30
Consensus pattern (12 bp):
GCCCGTGTCTTA
Found at i:33590251 original size:24 final size:24
Alignment explanation
Indices: 33590186--33590253 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
33590176 GAAAGCTTGT
*
33590186 AAAGAGCCATAATCGGGAAGTTCAC
1 AAAGAACCAT-ATCGGGAAGTTCAC
* * * *
33590211 AAAGAATCTTATCGGGAAGTTGAG
1 AAAGAACCATATCGGGAAGTTCAC
*
33590235 AAAGAACCATATTGGGAAG
1 AAAGAACCATATCGGGAAG
33590254 CTCCGGATAG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
24 28 0.80
25 7 0.20
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.19
Consensus pattern (24 bp):
AAAGAACCATATCGGGAAGTTCAC
Found at i:33591822 original size:16 final size:15
Alignment explanation
Indices: 33591795--33591828 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
33591785 ATAACTAGTA
*
33591795 TATAATTATATTTAT
1 TATAATTATATTAAT
33591810 TATAATATATATTAAT
1 TATAAT-TATATTAAT
33591826 TAT
1 TAT
33591829 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:33593403 original size:37 final size:37
Alignment explanation
Indices: 33593345--33593489 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
33593335 GCTCAGACGA
* *
33593345 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACA-
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
33593381 AATTCTCCACACGTATTCATCGGGTCTTATCCGAACAT
1 AA-TCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
33593419 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
33593456 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
33593490 ATATATTTCC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
36 2 0.02
37 95 0.96
38 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:33593695 original size:47 final size:47
Alignment explanation
Indices: 33593644--33593837 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
33593634 CCTACATATT
* * * *
33593644 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
33593691 TCACATTGGCCATTCGGCCTTATCACACATATGTATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
33593738 TCGCATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
33593785 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
33593832 TCACAT
1 TCACAT
33593838 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:33596973 original size:536 final size:536
Alignment explanation
Indices: 33595963--33599176 Score: 6126
Period size: 536 Copynumber: 6.0 Consensus size: 536
33595953 TTAAAATTTC
33595963 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
*
33596028 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCATTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
33596093 AGTCACGGCAATGGGGAGTAA-GGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
*
33596157 TTTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
*
33596222 TCACCATCTAGA-TTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
33596286 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
*
33596351 TGCAATCGACTAAATTGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
* *
33596416 TATGACAGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCAACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
33596481 AATTAGGGGTGTCACA
521 AATTAGGGGTGTCACA
*
33596497 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCTTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
33596562 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
*
33596627 ATTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
*
33596692 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGA
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
33596757 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
33596822 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
*
33596887 TTCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
*
33596952 TATGATGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
33597017 AATTAGGGGTGTCACA
521 AATTAGGGGTGTCACA
*
33597033 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCTTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
33597098 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
* *
33597163 AGTCACGGCAATGGGGAGCAAAGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
33597228 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
33597293 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
33597358 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
** * *
33597423 TGCAATTAACTAAATCGAAGCATAAAGCTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
33597488 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
*
33597553 AATTAAGGGTGTCACA
521 AATTAGGGGTGTCACA
33597569 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
33597634 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
33597699 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
*
33597764 ATTATTCTTCCCACACATATTAGCATAAAACGTCTATAATATGTTTTACCCCATAGCATCGCCGG
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
33597829 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
33597894 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
*
33597959 TGCAATCGACTAAATCGAAGCTTAAAATTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
**
33598024 TATGACAACTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
33598089 AATTAGGGGTGTCACA
521 AATTAGGGGTGTCACA
*
33598105 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCTTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
33598170 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
33598235 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
33598300 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
*
33598365 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAT
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
33598430 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
33598495 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
*
33598560 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCAACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
33598625 AATTAGGGGTGTCACA
521 AATTAGGGGTGTCACA
33598641 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
1 ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
33598706 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
66 TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
33598771 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
131 AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
33598836 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
196 ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
33598901 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
261 CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
* * * *
33598966 GTCCTTATAGATTAACCTATCGCATTCCAAAAGTGTCACATATAAGTCTTATTACTAAATTCTCA
326 GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
*
33599031 TGCAATCGACTAAATCAAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
391 TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
*
33599096 TATGACTGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
456 TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
33599161 AATTAGGGGTGTCACA
521 AATTAGGGGTGTCACA
33599177 GAAATGGTAA
Statistics
Matches: 2628, Mismatches: 50, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
534 148 0.06
535 117 0.04
536 2363 0.90
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (536 bp):
ACAATTTGACATAATATACTAACCTTTTTAATGACTCAAGTGACCCAAAAATTCTTCCCCTCCTT
TGTTTCTTCTATTCGGCCAAGTTGAACAACAAAGAAAGAACTTTGTTTTTTCCTCCCCTTTCTCT
AGTCACGGCAATGGGGAGTAAGGGGGAGACAACTTTGGTTTCTCCTCCCACTCCCCTCATATTTT
ATTATTCTTCCCACACATATTAGCATAAAATGTCTATAATATGTTTTACCCCATAGCATCGCCGG
CCACCATCTAGATTTTTGGCTAATTTGACATGCAAACCCTTCTTTTATACAACATGCATTAATAG
GTCCTTATAGATTAACCTATCGCATTTCAAAAGTGTCACACATAAGTCCTATTACTAAATTCACA
TGCAATCGACTAAATCGAAGCTTAAAACTTTCACACATTCATATTCACATATAATAAACATAAAA
TATGACGGCTAATTATTTTTATGACTCGATTTTGTGGTCCCGAAACCATTTTTCGACTAGGGTCA
AATTAGGGGTGTCACA
Found at i:33619635 original size:536 final size:536
Alignment explanation
Indices: 33618623--33619702 Score: 2124
Period size: 536 Copynumber: 2.0 Consensus size: 536
33618613 ATTTTGGGGG
33618623 TGAGTATGGTTTTCGACTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
1 TGAGTATGGTTTTCGACTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
33618688 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
66 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
33618753 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
131 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
33618818 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
196 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
33618883 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAAAAAAAAGAGAGCAAAGGGGG
261 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAAAAAAAAGAGAGCAAAGGGGG
33618948 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
326 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
*
33619013 GCCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
391 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
33619078 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
456 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
33619143 CATTCGGCCATCTAAT
521 CATTCGGCCATCTAAT
*
33619159 TGAGTATGGTTTTCGGCTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
1 TGAGTATGGTTTTCGACTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
33619224 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
66 TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
33619289 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
131 CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
*
33619354 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAATCTTGTAAGTTGGATGATGAAATTCATGCT
196 TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
*
33619419 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAACAAAAAGAGAGCAAAGGGGG
261 TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAAAAAAAAGAGAGCAAAGGGGG
33619484 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
326 AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
33619549 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
391 ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
33619614 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
456 ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
33619679 CATTCGGCCATCTAAT
521 CATTCGGCCATCTAAT
33619695 TGAGTATG
1 TGAGTATG
33619703 AAGGTGGTGT
Statistics
Matches: 540, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
536 540 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (536 bp):
TGAGTATGGTTTTCGACTATAAAAGATTAATAAGGGTGATGATTGTGTTTCATGCTAAACTTAGA
TGAATAATGGTAGTTGCTCACATCTTGATATCTATGAGTTCCTTTCTTGGTTCTACCATAGACCC
CCAAAGTATATGTTTATTGGGTGTTGTTGGAGGTTTATGATAGAAGCTAATGAGTGAGAGTTTGA
TAGGTACCATGAGGTTAAACTTCATGAGATTGTAAGCTTGTAAGTTGGATGATGAAATTCATGCT
TTGTGAAGGTAAAAGGAGTAGAAGGAGCATTCGGCCATGAAGAAAAAAAAAGAGAGCAAAGGGGG
AAATTTATGATGAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGGTATGTATATTCG
ACCATATGAGTAAATATATAGATGATGTTAAATTTTATTATGTATAATGGGCATTAAGATGTGGA
ACATAAGAAATGTAGTATATGTGGATCTACATGATGTTATAGTTGACATTGTGCATATACACATG
CATTCGGCCATCTAAT
Found at i:33619760 original size:12 final size:12
Alignment explanation
Indices: 33619743--33619769 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33619733 ATTCCGAAGT
33619743 ATATATATATAC
1 ATATATATATAC
33619755 ATATATATATAC
1 ATATATATATAC
33619767 ATA
1 ATA
33619770 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:33620283 original size:27 final size:27
Alignment explanation
Indices: 33620252--33620429 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
33620242 TAAATTGTAC
33620252 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
33620279 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33620305 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
33620333 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33620361 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33620388 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33620415 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33620430 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33620366 original size:82 final size:81
Alignment explanation
Indices: 33620253--33620408 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33620243 AAATTGTACA
* *
33620253 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
33620317 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33620334 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
33620399 TGCGAGTTGA
65 TGCGAATTGA
33620409 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33620420 original size:82 final size:81
Alignment explanation
Indices: 33620249--33620429 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
33620239 GATTAAATTG
* *
33620249 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33620314 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33620330 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33620394 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33620412 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33620430 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33644379 original size:42 final size:42
Alignment explanation
Indices: 33644310--33644427 Score: 112
Period size: 44 Copynumber: 2.8 Consensus size: 42
33644300 ATTCAGTTTT
* * * *
33644310 GATGCCTCTGTCCCAAACAGGGACTTACACGAAA-TCAAATAC
1 GATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAAT-C
** *
33644352 GATGCCTATGTCCCAGACATAGTCTTACACATAAATCTCAAATC
1 GATGCCTATGTCCCAGACACGGTCTTACAC-GAAA-CTCAAATC
* * *
33644396 GAGGCCTGTCTCCCAGACACGGTCTTACACGA
1 GATGCCTATGTCCCAGACACGGTCTTACACGA
33644428 TATCTCAGAT
Statistics
Matches: 61, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
42 25 0.41
43 4 0.07
44 26 0.43
45 6 0.10
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (42 bp):
GATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAAATC
Found at i:33649036 original size:16 final size:17
Alignment explanation
Indices: 33649015--33649048 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33649005 GAATATTATG
33649015 AAATAAA-ACCAAACAA
1 AAATAAACACCAAACAA
*
33649031 AAATAAACATCAAACAA
1 AAATAAACACCAAACAA
33649048 A
1 A
33649049 TGCCATCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.74, C:0.18, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAAACACCAAACAA
Found at i:33652649 original size:27 final size:26
Alignment explanation
Indices: 33652619--33652795 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 26
33652609 AAATTGTACA
* *
33652619 GCACTAAGTGTGCGATTCGACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTG
* *
33652646 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCG-ATTGACTATG-TG
* *
33652673 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTG
*
33652700 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTG
* *
33652728 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTG
* * *
33652755 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTG
*
33652782 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
33652796 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 26 0.21
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTG
Found at i:33652742 original size:82 final size:81
Alignment explanation
Indices: 33652619--33652774 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
33652609 AAATTGTACA
* * * *
33652619 GCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
33652683 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
33652700 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
33652765 TGCGAGTTGA
65 TGCGAATTGA
33652775 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:33652786 original size:82 final size:81
Alignment explanation
Indices: 33652615--33652795 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
33652605 GATTAAATTG
* * * *
33652615 TACAGCACTAAGTGTGCGATTCGACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
33652680 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
33652696 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33652760 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
33652778 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33652796 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:33660705 original size:27 final size:27
Alignment explanation
Indices: 33660641--33660816 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
33660631 TAAATTGTAC
33660641 AGCACTAAGTGTGCG-ATTCGACT-TGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
* * *
33660667 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
33660693 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
33660721 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
33660748 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
33660775 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
33660802 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33660817 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
26 17 0.14
27 108 0.86
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:33660736 original size:54 final size:54
Alignment explanation
Indices: 33660641--33660816 Score: 198
Period size: 54 Copynumber: 3.3 Consensus size: 54
33660631 TAAATTGTAC
* * **
33660641 AGCACTAAGTGTGCG-ATTCGACTTGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGAATT-GACATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
33660695 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGAATTGA-CATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
33660748 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGAATTGA-CATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
33660802 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33660817 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
53 17 0.16
54 88 0.84
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:33660763 original size:81 final size:80
Alignment explanation
Indices: 33660642--33660795 Score: 213
Period size: 81 Copynumber: 1.9 Consensus size: 80
33660632 AAATTGTACA
* *
33660642 GCACTAAGTGTGCGATTCGACTTGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTTGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTGT
33660706 GCGAATTGACCATGCG
65 GCGAATTGACCATGCG
** *
33660722 GCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACT-TGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
33660786 TGCGAGTTGA
64 TGCGAATTGA
33660796 TTATATAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
80 20 0.31
81 45 0.69
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (80 bp):
GCACTAAGTGTGCGATTCGACTTGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGTG
CGAATTGACCATGCG
Found at i:33660807 original size:81 final size:80
Alignment explanation
Indices: 33660638--33660816 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 80
33660628 GATTAAATTG
* *
33660638 TACAGCACTAAGTGTGCGATTCGACTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATTCGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
33660703 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
33660718 TGCGGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACT-TGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
33660781 AAGTGTGCGAGTTGATTA
63 AAGTGTGCGAATTGACCA
* *
33660799 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
33660817 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 22 0.27
81 60 0.73
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATTCGACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAG
TGTGCGAATTGACCA
Found at i:33678207 original size:16 final size:17
Alignment explanation
Indices: 33678175--33678208 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33678165 GGGGATGGCG
33678175 TTTGTTTGATGTTTATT
1 TTTGTTTGATGTTTATT
*
33678192 TTTGTTTGGT-TTTATT
1 TTTGTTTGATGTTTATT
33678208 T
1 T
33678209 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.74
Consensus pattern (17 bp):
TTTGTTTGATGTTTATT
Found at i:33679503 original size:21 final size:21
Alignment explanation
Indices: 33679486--33679546 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
33679476 AATCAACACC
33679486 CTCAGATGCATCCACAACAAA
1 CTCAGATGCATCCACAACAAA
* * *
33679507 GTTAGATGCATCCACATCGAAA
1 CTCAGATGCATCCACAAC-AAA
* *
33679529 -TCAGACGCAGCCACAACA
1 CTCAGATGCATCCACAACA
33679547 CTCTTCAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
20 1 0.03
21 28 0.88
22 3 0.09
ACGTcount: A:0.39, C:0.31, G:0.15, T:0.15
Consensus pattern (21 bp):
CTCAGATGCATCCACAACAAA
Found at i:33681520 original size:46 final size:46
Alignment explanation
Indices: 33681470--33681642 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
33681460 TGGTTGAGCA
*
33681470 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
33681516 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
33681561 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33681609 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33681643 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33681626 original size:93 final size:93
Alignment explanation
Indices: 33681467--33681637 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
33681457 GGATGGTTGA
* *
33681467 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
*
33681532 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
33681560 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
33681625 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33681638 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33688595 original size:46 final size:46
Alignment explanation
Indices: 33688545--33688810 Score: 278
Period size: 46 Copynumber: 5.7 Consensus size: 46
33688535 TGGTTGAGCA
33688545 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
33688591 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33688636 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
33688684 TCTGAACTCGTTGGGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
33688729 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
33688777 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33688811 GGGGCGGGTT
Statistics
Matches: 183, Mismatches: 19, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 89 0.49
47 55 0.30
48 6 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:33688663 original size:47 final size:47
Alignment explanation
Indices: 33688594--33688759 Score: 216
Period size: 47 Copynumber: 3.6 Consensus size: 47
33688584 GCGAATGTCC
33688594 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCT
* * *
33688641 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
* *
33688687 GAACTCGTTGGGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCT
33688734 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
33688760 ACTTATGGAT
Statistics
Matches: 101, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 28 0.28
47 53 0.52
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCT
Found at i:33688702 original size:93 final size:93
Alignment explanation
Indices: 33688542--33688805 Score: 474
Period size: 93 Copynumber: 2.8 Consensus size: 93
33688532 GGATGGTTGA
33688542 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
33688607 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
33688635 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGGGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
33688700 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
33688728 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
33688793 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33688806 ACTTAGGGGC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33691494 original size:48 final size:48
Alignment explanation
Indices: 33691429--33691670 Score: 246
Period size: 48 Copynumber: 5.1 Consensus size: 48
33691419 AAAATTACAT
* * *
33691429 TCACATAGTAGGATGCCAATGCCATTTCCCAAATATGGTCTTACATGGGA
1 TCACATA-TA-GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
*
33691479 TCACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGA
1 TCACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* * * * *
33691527 TCATGCATATCGAAGCCGAT---A-G-CCCAG-CTATGGTCTTACACGATG-
1 TCA--CATATAGATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGA
* * *
33691572 TCTCATATTGATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGA
1 TCACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* * *
33691620 TCACATTTCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGA
1 TCACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
33691668 TCA
1 TCA
33691671 TGCATATCCC
Statistics
Matches: 159, Mismatches: 22, Indels: 24
0.78 0.11 0.12
Matches are distributed among these distances:
43 12 0.08
44 1 0.01
45 18 0.11
46 3 0.02
47 3 0.02
48 100 0.63
49 3 0.02
50 19 0.12
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
TCACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
Found at i:33701295 original size:17 final size:17
Alignment explanation
Indices: 33701273--33701305 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33701263 GTTAGCGAAC
*
33701273 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
33701290 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
33701306 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:33701645 original size:81 final size:81
Alignment explanation
Indices: 33701510--33701670 Score: 322
Period size: 81 Copynumber: 2.0 Consensus size: 81
33701500 TGAACGAGTT
33701510 GCATAAATTTGACTGAATGTTGTATCTTCAATTCTTTGATGAATGATTTAGGTTCCATTAGTAAT
1 GCATAAATTTGACTGAATGTTGTATCTTCAATTCTTTGATGAATGATTTAGGTTCCATTAGTAAT
33701575 GGATGACAAGTAGCAA
66 GGATGACAAGTAGCAA
33701591 GCATAAATTTGACTGAATGTTGTATCTTCAATTCTTTGATGAATGATTTAGGTTCCATTAGTAAT
1 GCATAAATTTGACTGAATGTTGTATCTTCAATTCTTTGATGAATGATTTAGGTTCCATTAGTAAT
33701656 GGATGACAAGTAGCA
66 GGATGACAAGTAGCA
33701671 TTCCTTGAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
GCATAAATTTGACTGAATGTTGTATCTTCAATTCTTTGATGAATGATTTAGGTTCCATTAGTAAT
GGATGACAAGTAGCAA
Found at i:33706539 original size:15 final size:17
Alignment explanation
Indices: 33706509--33706541 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
33706499 GACTTGTAAC
33706509 TCAAATCATATACATCT
1 TCAAATCATATACATCT
33706526 TCAAA-CAT-TACATCT
1 TCAAATCATATACATCT
33706541 T
1 T
33706542 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 3 0.19
17 5 0.31
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.36
Consensus pattern (17 bp):
TCAAATCATATACATCT
Found at i:33727130 original size:43 final size:43
Alignment explanation
Indices: 33727077--33727231 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
33727067 CCAGCATTAT
*
33727077 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
33727120 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
33727163 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
33727206 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
33727232 TAATACCAGC
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:33727278 original size:38 final size:38
Alignment explanation
Indices: 33727224--33727307 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
33727214 GGCACGAAGG
* * *
33727224 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
33727262 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
33727300 CCCGAATA
1 CCCGAATA
33727308 CACATCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:33745176 original size:11 final size:11
Alignment explanation
Indices: 33745160--33745184 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
33745150 GCCTGGACTG
33745160 ATAATCTTGCC
1 ATAATCTTGCC
33745171 ATAATCTTGCC
1 ATAATCTTGCC
33745182 ATA
1 ATA
33745185 TATGTGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (11 bp):
ATAATCTTGCC
Found at i:33763957 original size:13 final size:13
Alignment explanation
Indices: 33763939--33763975 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
33763929 TTACCACAAA
33763939 AATTTTTTTTTTG
1 AATTTTTTTTTTG
33763952 AA-TTTTTTTTTG
1 AATTTTTTTTTTG
*
33763964 AGTTTTTTTTTT
1 AATTTTTTTTTT
33763976 CGAGAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (13 bp):
AATTTTTTTTTTG
Found at i:33769654 original size:79 final size:79
Alignment explanation
Indices: 33769523--33769681 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
33769513 CATGCTGATA
33769523 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
1 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
33769588 TGTTGTTTGTGTTT
66 TGTTGTTTGTGTTT
33769602 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
1 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
33769667 TGTTGTTTGTGTTT
66 TGTTGTTTGTGTTT
33769681 T
1 T
33769682 AATGAATAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.55
Consensus pattern (79 bp):
TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
TGTTGTTTGTGTTT
Found at i:33769968 original size:52 final size:52
Alignment explanation
Indices: 33769885--33769985 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
33769875 TAAGGCAACG
* *
33769885 TAATGGACAGCAGCTTAAGATCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
33769937 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
33769986 TATGTGCATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:33774196 original size:47 final size:47
Alignment explanation
Indices: 33774138--33774677 Score: 866
Period size: 47 Copynumber: 11.5 Consensus size: 47
33774128 ATTCATCCAA
33774138 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774185 GAAAGTGTATATGTGTGATAAGGCCTAATCGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
33774232 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
33774279 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774328 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774375 GAAAGTGTATATGTGTG-TAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774421 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
33774468 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774515 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATCAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
33774562 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
33774609 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
33774656 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
33774678 TCCCGAAGGG
Statistics
Matches: 465, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 46 0.10
47 373 0.80
49 46 0.10
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:33774852 original size:37 final size:37
Alignment explanation
Indices: 33774796--33774874 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
33774786 CCGAGCTCTA
* *
33774796 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
33774833 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33774870 AAGAC
1 AAGAC
33774875 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33776782 original size:43 final size:43
Alignment explanation
Indices: 33776734--33776836 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
33776724 GTTGGTTTTA
33776734 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
33776777 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
33776820 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
33776837 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:33776853 original size:29 final size:29
Alignment explanation
Indices: 33776818--33776891 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
33776808 GTTGTGAGAT
* *
33776818 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
33776847 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
33776876 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33776892 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:33780892 original size:47 final size:47
Alignment explanation
Indices: 33780834--33781178 Score: 584
Period size: 47 Copynumber: 7.3 Consensus size: 47
33780824 ATTCAGCCAA
*
33780834 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33780881 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCAATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33780928 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33780975 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
33781024 GAAAGTGAATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33781071 GAAAGTGTATATGT-TGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
33781117 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
33781164 GAAAGTGTATATATG
1 GAAAGTGTATATATG
33781179 ATAAGTGTAT
Statistics
Matches: 284, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 46 0.16
47 191 0.67
49 47 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:33781190 original size:62 final size:62
Alignment explanation
Indices: 33781119--33781240 Score: 226
Period size: 62 Copynumber: 2.0 Consensus size: 62
33781109 ATGAATGTGA
*
33781119 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGAT
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGAT
*
33781181 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
33781241 TGACTGGGCC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (62 bp):
AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGAT
Found at i:33781197 original size:17 final size:17
Alignment explanation
Indices: 33781160--33781200 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 17
33781150 GATGTGATGA
33781160 ATGTGA-AAGTGTATAT
1 ATGTGATAAGTGTATAT
33781176 A--TGATAAGTGTATAT
1 ATGTGATAAGTGTATAT
33781191 ATGTGATAAG
1 ATGTGATAAG
33781201 GCCTAATGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 3 0.14
15 11 0.50
16 1 0.05
17 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (17 bp):
ATGTGATAAGTGTATAT
Found at i:33781226 original size:31 final size:30
Alignment explanation
Indices: 33781130--33781227 Score: 76
Period size: 31 Copynumber: 3.2 Consensus size: 30
33781120 AGTGTATATG
33781130 TGTGATAAGGCCTAATAGCCGATGTGATGAA
1 TGTGATAAGGCCTAAT-GCCGATGTGATGAA
** ** *
33781161 TGTGA-AAGTGTATATATG-ATAAGTGTAT-ATA
1 TGTGATAAG-GCCTA-ATGCCGATGTG-ATGA-A
33781192 TGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGATAAGGCCTAAT-GCCGATGTGATGAA
33781223 TGTGA
1 TGTGA
33781228 AAGTGTATAT
Statistics
Matches: 49, Mismatches: 10, Indels: 16
0.65 0.13 0.21
Matches are distributed among these distances:
30 10 0.20
31 29 0.59
32 10 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.31
Consensus pattern (30 bp):
TGTGATAAGGCCTAATGCCGATGTGATGAA
Found at i:33781258 original size:47 final size:47
Alignment explanation
Indices: 33781181--33781294 Score: 140
Period size: 47 Copynumber: 2.4 Consensus size: 47
33781171 TATATATGAT
* * *
33781181 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
* * *
33781228 AAGTGTATATATGTGACT-GGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGA-TAAGGCCGAATGGCCAACGTGATGAATGTGA
* *
33781275 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
33781295 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 1 0.02
47 54 0.96
48 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGA
Found at i:33781276 original size:109 final size:108
Alignment explanation
Indices: 33781073--33781279 Score: 299
Period size: 109 Copynumber: 1.9 Consensus size: 108
33781063 ATGAATGTGA
* *
33781073 AAGTGTATATGTTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AAGTGTATATATTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
33781138 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGAT
66 GGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATATATGAT
*
33781181 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACT
1 AAGTGTATATAT-TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-T
* * * *
33781246 -GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
64 AAGGCCGAATAGCCAACGTGATGAATGTGAAAGTG
33781280 CATAAATGTG
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
108 11 0.13
109 75 0.86
110 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.29
Consensus pattern (108 bp):
AAGTGTATATATTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATATATGAT
Found at i:33781469 original size:37 final size:37
Alignment explanation
Indices: 33781413--33781491 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
33781403 CCGAGCTCTA
* * *
33781413 AAGATCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
33781450 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
33781487 AAGAC
1 AAGAC
33781492 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:33791808 original size:40 final size:40
Alignment explanation
Indices: 33791750--33791974 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
33791740 AACCCAATTA
* * ** *
33791750 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
33791790 CCTTTGGGACTTAACCCGGAAATAGCAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
33791830 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
** *
33791870 CCTTCATGACTTAACCCAGG-AATAACAACCGGCACGAATG
1 CCTTCGGGACTTAACCC-GGAAATAACAACCAGCACGAATG
* *
33791910 CCTTCGGGACTTAACCCGAAAATAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
33791950 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
33791975 TCCTCAATTG
Statistics
Matches: 162, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 159 0.98
41 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:33800849 original size:27 final size:27
Alignment explanation
Indices: 33800796--33801033 Score: 287
Period size: 27 Copynumber: 8.8 Consensus size: 27
33800786 AAACTTACAT
* * **
33800796 CACATAAGGGAAAAATAGTCAGCTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * * *
33800823 CATATAAGGGAAAAAAAGTTATATTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
33800850 CACATAAAGGCAAAACAGTTATTTTTC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
33800877 CACATAAGGGCAAAACAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
33800904 CACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
33800931 CACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
33800958 CACATAAGGGCAAAACAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
33800985 CACATAAGAGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
33801012 CACATAAGGGCAAAACAGTCAT
1 CACATAAGGGCAAAACAGTCAT
33801034 GTCATCAAAT
Statistics
Matches: 191, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 191 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:33803047 original size:28 final size:28
Alignment explanation
Indices: 33803016--33803096 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 28
33803006 TGGGAAGTAG
*
33803016 TTGGGCCTAATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* * *
33803044 TTGGGCCTGATAGGCCATGTGAATGAGA
1 TTGGGCCTAATGGGCCATATGAATGAGA
* *
33803072 TTGGGCCTAAAAGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
33803097 AAGTGTGGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 32 0.74
29 11 0.26
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGAGA
Found at i:33803441 original size:27 final size:26
Alignment explanation
Indices: 33803411--33803520 Score: 148
Period size: 27 Copynumber: 4.1 Consensus size: 26
33803401 GCTGAAATAC
*
33803411 CCCCAATTTGTAAAATTATCGAAGTA
1 CCCCAGTTTGTAAAATTATCGAAGTA
*
33803437 TCCCCCGTTTGTAAAATTATCGAAGTA
1 -CCCCAGTTTGTAAAATTATCGAAGTA
33803464 CCCTCAGTTTGTAAAATTATCGAAGTA
1 CCC-CAGTTTGTAAAATTATCGAAGTA
* * *
33803491 CCCCCGGTTTGTAAAATTATAGAAATA
1 -CCCCAGTTTGTAAAATTATCGAAGTA
33803518 CCC
1 CCC
33803521 TTGTAGTGTA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 6 0.08
27 66 0.88
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (26 bp):
CCCCAGTTTGTAAAATTATCGAAGTA
Found at i:33803478 original size:54 final size:54
Alignment explanation
Indices: 33803404--33803521 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
33803394 ATAAATTGCT
* *
33803404 GAAATACCCCCAATTTGTAAAATTATCGAAGTATCCCCC-GTTTGTAAAATTATC
1 GAAATACCCTCAATTTGTAAAATTATCGAAGTA-CCCCCGGTTTGTAAAATTATA
* *
33803458 GAAGTACCCTCAGTTTGTAAAATTATCGAAGTACCCCCGGTTTGTAAAATTATA
1 GAAATACCCTCAATTTGTAAAATTATCGAAGTACCCCCGGTTTGTAAAATTATA
33803512 GAAATACCCT
1 GAAATACCCT
33803522 TGTAGTGTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 5 0.09
54 53 0.91
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.31
Consensus pattern (54 bp):
GAAATACCCTCAATTTGTAAAATTATCGAAGTACCCCCGGTTTGTAAAATTATA
Found at i:33803530 original size:27 final size:27
Alignment explanation
Indices: 33803500--33803588 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
33803490 ACCCCCGGTT
**
33803500 TGTAAAATTATAGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
33803527 TGTATAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* *
33803554 TGTAAAATGACCGACATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
33803581 GGTAAAAT
1 TGTAAAAT
33803589 GACTATTTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:33803536 original size:54 final size:53
Alignment explanation
Indices: 33803404--33803547 Score: 164
Period size: 54 Copynumber: 2.7 Consensus size: 53
33803394 ATAAATTGCT
* * * *
33803404 GAAATACCCCCAATTTGTAAAATTATCGAAGTATCCCCCGTTTGTAAAATTATC
1 GAAATACCCTCAGTGTGTAAAATTATCGAAGTA-CCCCCGTTTGTAAAATTATA
* *
33803458 GAAGTACCCTCAGTTTGTAAAATTATCGAAGTACCCCCGGTTTGTAAAATTATA
1 GAAATACCCTCAGTGTGTAAAATTATCGAAGTACCCCC-GTTTGTAAAATTATA
* * * *
33803512 GAAATACCCT-TGTAGTGTATAATTACCGAAATACCC
1 GAAATACCCTCAGT-GTGTAAAATTATCGAAGTACCC
33803548 TTGTAGTGTA
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 7 0.09
54 71 0.91
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.31
Consensus pattern (53 bp):
GAAATACCCTCAGTGTGTAAAATTATCGAAGTACCCCCGTTTGTAAAATTATA
Found at i:33808643 original size:14 final size:14
Alignment explanation
Indices: 33808624--33808650 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33808614 ACAGCGGTCA
33808624 CACGCCCATGTGGT
1 CACGCCCATGTGGT
33808638 CACGCCCATGTGG
1 CACGCCCATGTGG
33808651 GTAGACCGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.37, G:0.30, T:0.19
Consensus pattern (14 bp):
CACGCCCATGTGGT
Found at i:33810953 original size:44 final size:41
Alignment explanation
Indices: 33810856--33810955 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
33810846 CAATGGTATT
* *
33810856 TGGCACTAAGTGTGCGATTCAAAATAGCTTCAACTATTTGA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCAACTAATTGA
* * **
33810897 -GGCACTAAGTGTGCGATACCGAGATAGCTTCAGTTAATTGAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCAACTAATTG--A
33810940 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
33810956 GATGTTAAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 17 0.35
41 16 0.33
43 1 0.02
44 15 0.31
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCAACTAATTGA
Found at i:33817438 original size:11 final size:11
Alignment explanation
Indices: 33817422--33817448 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
33817412 AATAAAACAA
33817422 AAGCTTCAAAT
1 AAGCTTCAAAT
33817433 AAGCTTCAAAT
1 AAGCTTCAAAT
33817444 AAGCT
1 AAGCT
33817449 CATTTCATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.26
Consensus pattern (11 bp):
AAGCTTCAAAT
Found at i:33824225 original size:105 final size:102
Alignment explanation
Indices: 33824046--33824273 Score: 280
Period size: 105 Copynumber: 2.2 Consensus size: 102
33824036 ACCTGACGGA
* * * *
33824046 TAAGACCATGGTTAGACCATGGCAAAGTGTTAAATGTAAGACCATAGCTGGGCTATGGCATTTTA
1 TAAGACCATGGTTGGACCATGACAAAGTGTTAAATGTAAGACCATAGCTGGGCTATGGCATCTGA
* *
33824111 GTGAAAAGACCATAATTAGGTTATGGCACTGTGAACG
66 GTGAAAAGACCATAACTAGGTTATGGCACTATGAACG
* *
33824148 TAAGACCATGGTTGGACCATGACAGTATA-TGTATAAGTGTAAGACCATAGTTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGACA--A-AGTGT-TAAATGTAAGACCATAGCTGGGCTATGGCAT
* **
33824212 CCTGA-TGATAAGACCATAACTAGGTTATGGCACTATGAGTG
62 -CTGAGTGAAAAGACCATAACTAGGTTATGGCACTATGAACG
* *
33824253 TAAGACCATGGTAGGGCCATG
1 TAAGACCATGGTTGGACCATG
33824274 GCAATATACG
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
102 22 0.20
104 4 0.04
105 80 0.74
106 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.26
Consensus pattern (102 bp):
TAAGACCATGGTTGGACCATGACAAAGTGTTAAATGTAAGACCATAGCTGGGCTATGGCATCTGA
GTGAAAAGACCATAACTAGGTTATGGCACTATGAACG
Found at i:33827139 original size:40 final size:39
Alignment explanation
Indices: 33826949--33827132 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
33826939 TGAATGATGT
* * * *
33826949 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
33826989 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
33827029 CCGGGCTAAG-CCCGAAGGCATTTGTTCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33827067 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33827108 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33827133 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33827154 original size:79 final size:79
Alignment explanation
Indices: 33827001--33827165 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
33826991 GGACTAAGAT
* **
33827001 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTTCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
33827066 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
33827080 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
33827143 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
33827159 CCGAAGG
1 CCGAAGG
33827166 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 22 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:33833682 original size:27 final size:26
Alignment explanation
Indices: 33833634--33833685 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33833624 GCGAGGCTGC
*
33833634 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
33833660 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
33833686 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33841111 original size:27 final size:26
Alignment explanation
Indices: 33841063--33841114 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33841053 GTAAGGCTGC
*
33841063 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
33841089 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
33841115 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33843872 original size:31 final size:31
Alignment explanation
Indices: 33843812--33843873 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
33843802 GATCTTTGAG
** *
33843812 ATTGTGCATAGATTACGGACAACTGAACAAT
1 ATTGTGCATAGATTACAAACAACTAAACAAT
*
33843843 ATTGTGCATAGATTACAAACAGCTAAACAAT
1 ATTGTGCATAGATTACAAACAACTAAACAAT
33843874 GTCACAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (31 bp):
ATTGTGCATAGATTACAAACAACTAAACAAT
Found at i:33847318 original size:93 final size:92
Alignment explanation
Indices: 33847159--33847340 Score: 244
Period size: 93 Copynumber: 2.0 Consensus size: 92
33847149 GTGTATGCTA
* * * * *
33847159 GTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTATCTG
1 GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGATATGCAAGCCAGTGTAAGACCTATCTG
*
33847224 GGACATGGCATCGGCTTGAGGTGTGTCT
66 GGACATGGCATCGACTT-AGGTGTGTCT
*
33847252 GTGTAAAACCTATCTGGGACATGGCATC-GACAC-AGATGA-GCTAGAGCCAGTGTAAGACCTGT
1 GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGAT-ATGC-A-AGCCAGTGTAAGACCTAT
33847314 CTGGGACATGGCATCGACTTAGGTGTG
63 CTGGGACATGGCATCGACTTAGGTGTG
33847341 AGAGCCAGTG
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
91 6 0.08
92 12 0.15
93 61 0.77
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (92 bp):
GTGTAAAACCTATCTGGGACATGGCATCGGACACAAGATATGCAAGCCAGTGTAAGACCTATCTG
GGACATGGCATCGACTTAGGTGTGTCT
Found at i:33847330 original size:49 final size:48
Alignment explanation
Indices: 33847158--33847380 Score: 172
Period size: 49 Copynumber: 4.7 Consensus size: 48
33847148 TGTGTATGCT
* * *
33847158 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAAGAT-ATGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACAC-AGATGA-GCAGAGCC
* * * ** * *
33847207 AGTGTAAGACCTATCTGGGACATGGCATCG--GC--TTGAGGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
* * *
33847251 TGTGTAAAACCTATCTGGGACATGGCATCGACACAGATGAGCTAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGC-AGAGCC
** * *
33847300 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGGTGTG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
* * *
33847347 AGTGTAAGACCATGTTTGGAACATGGCTTCGACA
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACA
33847381 TCGTACCCTA
Statistics
Matches: 139, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
43 2 0.01
44 30 0.22
46 2 0.01
47 17 0.12
48 23 0.17
49 65 0.47
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACAGATGAGCAGAGCC
Found at i:33850258 original size:64 final size:64
Alignment explanation
Indices: 33850177--33850360 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
33850167 AAACACTATG
* *
33850177 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
33850241 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
33850305 TAA
62 TAA
* * * * *
33850308 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
33850361 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 23 0.23
65 4 0.04
66 19 0.19
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:33853585 original size:30 final size:30
Alignment explanation
Indices: 33853551--33853611 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33853541 TCGTTAACTC
33853551 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
33853581 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
33853611 A
1 A
33853612 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33857144 original size:39 final size:39
Alignment explanation
Indices: 33857049--33857427 Score: 518
Period size: 39 Copynumber: 9.6 Consensus size: 39
33857039 TTGAATGATG
*
33857049 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
33857087 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
33857128 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
33857167 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33857206 TCCGGGCTAAGCCCGAAGGTATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
33857245 TCCAGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
33857284 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
33857323 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
33857362 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
33857401 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
33857428 AATGAGGAGC
Statistics
Matches: 309, Mismatches: 24, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
39 240 0.78
40 57 0.18
41 11 0.04
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33862723 original size:15 final size:14
Alignment explanation
Indices: 33862679--33862723 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
33862669 ATCCTGGGAT
33862679 ATTAA-AACAAG-A
1 ATTAAGAACAAGTA
33862691 ATTAAGAACACA-TA
1 ATTAAGAACA-AGTA
33862705 ATTAAGAACAAGTTA
1 ATTAAGAACAAG-TA
33862720 ATTA
1 ATTA
33862724 TTTATCATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.18
13 5 0.18
14 12 0.43
15 6 0.21
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.24
Consensus pattern (14 bp):
ATTAAGAACAAGTA
Found at i:33867193 original size:16 final size:16
Alignment explanation
Indices: 33867174--33867204 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33867164 CTTCTTCACT
33867174 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33867190 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33867205 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33867210 original size:20 final size:20
Alignment explanation
Indices: 33867171--33867210 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33867161 AAACTTCTTC
* *
33867171 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33867191 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33867211 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33867622 original size:55 final size:52
Alignment explanation
Indices: 33867396--33867650 Score: 198
Period size: 55 Copynumber: 4.8 Consensus size: 52
33867386 AAGCGAGTAC
* * * **
33867396 CTTACCATTGCCATGACTTGTCATGGTCTTATGTGGTATCC-TT--TT-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTTCCTTAGAAA
* * *
33867445 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTTCCTTA-GAAA
* * * * * *
33867498 CTCACCAATTCCTTGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTT-CC-T-TAGAAA
* * *
33867553 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCTTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTTCCTTAGAAA
* *
33867606 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
33867651 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 6 0.04
53 40 0.24
54 12 0.07
55 63 0.38
56 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTTCCTTAGAAA
Found at i:33874697 original size:16 final size:16
Alignment explanation
Indices: 33874678--33874708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33874668 CTTCTTCACT
33874678 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33874694 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33874709 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33874714 original size:20 final size:20
Alignment explanation
Indices: 33874675--33874714 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33874665 AAACTTCTTC
* *
33874675 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33874695 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33874715 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33875090 original size:55 final size:54
Alignment explanation
Indices: 33874901--33875154 Score: 254
Period size: 55 Copynumber: 4.8 Consensus size: 54
33874891 AGCGGGTACT
* * * * * *
33874901 TTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GA-AAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* *
33874950 TTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* * * * *
33875003 TCACCAATTCCTTGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AAC
* * * *
33875058 TTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGA-AACC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAA-C
*
33875112 TTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
33875155 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
52 4 0.02
53 44 0.26
54 8 0.05
55 73 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
Found at i:33888553 original size:27 final size:27
Alignment explanation
Indices: 33888495--33888584 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
33888485 AGGAAGCGTC
33888495 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
33888523 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
33888550 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
33888579 CTGGTG
1 CTGGTG
33888585 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:33888603 original size:55 final size:56
Alignment explanation
Indices: 33888495--33888609 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
33888485 AGGAAGCGTC
* *
33888495 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
33888550 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
33888606 CTGG
1 CTGG
33888610 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:33889072 original size:19 final size:19
Alignment explanation
Indices: 33889048--33889086 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
33889038 TTTTAATTAT
* *
33889048 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
33889067 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
33889086 T
1 T
33889087 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:33890494 original size:49 final size:49
Alignment explanation
Indices: 33890424--33890602 Score: 225
Period size: 49 Copynumber: 3.7 Consensus size: 49
33890414 CATCAAAGTC
* * *
33890424 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCC
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
* * *
33890473 GATGTCTTGTCCCAGATAGGTCTTACACTAACATTCATATATCGAGGCT
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
* * * ** *
33890522 GATGTCATGTCCCAGATAGATCTTACACTGGCTCTCACCTATCG-GTGTT
1 GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAG-GCT
*
33890571 GATGCCATGTCCCAGATAGGTCTTACACTGAC
1 GATGTCATGTCCCAGATAGGTCTTACACTGAC
33890603 ACACAACAAG
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 110 0.99
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (49 bp):
GATGTCATGTCCCAGATAGGTCTTACACTGACTTTCATATATCGAGGCT
Found at i:33893654 original size:27 final size:27
Alignment explanation
Indices: 33893623--33893773 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
33893613 TAAATTGTAC
*
33893623 AGCACTAAGTGTGGGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
33893650 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33893677 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
33893705 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33893732 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33893759 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33893774 GACTCAATAT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
27 83 0.78
28 24 0.22
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33893710 original size:55 final size:55
Alignment explanation
Indices: 33893622--33893773 Score: 182
Period size: 55 Copynumber: 2.8 Consensus size: 55
33893612 TTAAATTGTA
* * *
33893622 CAGCACTAAGTGTGGGA-TTTGACTATGTTGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * **
33893676 CGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
33893731 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
33893774 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 36 0.43
55 48 0.57
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:33901680 original size:27 final size:27
Alignment explanation
Indices: 33901649--33901798 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
33901639 TAAATTGTAC
33901649 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
33901676 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33901703 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
33901731 -GCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
33901757 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
33901784 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33901799 GACTCAATAT
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.08
27 90 0.84
28 8 0.07
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:33901789 original size:81 final size:81
Alignment explanation
Indices: 33901650--33901798 Score: 208
Period size: 81 Copynumber: 1.8 Consensus size: 81
33901640 AAATTGTACA
* * * *
33901650 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
33901715 GCGAGTTTGACTATGT
66 GCGAGTTTGACTATGT
* * ** * *
33901731 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
33901796 GCG
66 GCG
33901799 GACTCAATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTGT
GCGAGTTTGACTATGT
Found at i:33903672 original size:17 final size:17
Alignment explanation
Indices: 33903650--33903682 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33903640 TCAATTCAAT
33903650 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
33903667 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
33903683 TTAGATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:33906587 original size:40 final size:40
Alignment explanation
Indices: 33906543--33906807 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
33906533 TACCGGATAT
* * * ** *
33906543 AAACAGGGGAATGTAAGTGCATTCAGGAATACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
*
33906583 AAACAGGGGCATGTATGTGCAATCAGGGGTACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * * *
33906623 AAACAGGGGCACGTATGTGCAATCAAGGGCACCGAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * * *
33906663 AAATAGGAGCACGTATGTACAATC-GGGGATACCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGG-TACCAAAGTAC
*
33906703 AAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
* * *
33906743 AAACAAGGGCATGTATGTGCAATCAAGGGTACCAAAGTAT
1 AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
**
33906783 AAACAGGGGCACATATGTGCAATCA
1 AAACAGGGGCATGTATGTGCAATCA
33906808 CTAATAATTA
Statistics
Matches: 199, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
39 3 0.02
40 192 0.96
41 4 0.02
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.17
Consensus pattern (40 bp):
AAACAGGGGCATGTATGTGCAATCAGGGGTACCAAAGTAC
Found at i:33906611 original size:20 final size:20
Alignment explanation
Indices: 33906586--33906654 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
33906576 GAAGTACAAA
*
33906586 CAGGGGCATGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
33906606 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCAAT
33906626 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
*
33906646 CAAGGGCAC
1 CAGGGGCAC
33906655 CGAAGTACAA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 2 0.05
20 34 0.92
21 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.33, T:0.16
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:33906771 original size:20 final size:20
Alignment explanation
Indices: 33906706--33906771 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
33906696 AAAGTACAAA
33906706 CAAGGGCATGTATGTGCAAT
1 CAAGGGCATGTATGTGCAAT
* * *** * * *
33906726 CAGGGGTACCAAAGTACAAA
1 CAAGGGCATGTATGTGCAAT
33906746 CAAGGGCATGTATGTGCAAT
1 CAAGGGCATGTATGTGCAAT
33906766 CAAGGG
1 CAAGGG
33906772 TACCAAAGTA
Statistics
Matches: 30, Mismatches: 16, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (20 bp):
CAAGGGCATGTATGTGCAAT
Found at i:33906800 original size:120 final size:120
Alignment explanation
Indices: 33906571--33906806 Score: 364
Period size: 120 Copynumber: 2.0 Consensus size: 120
33906561 GCATTCAGGA
* * * *
33906571 ATACCGAAGTACAAACAGGGGCATGTATGTGCAATCAGGGGTACCGAAGTACAAACAGGGGCACG
1 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
* * *
33906636 TATGTGCAATCAAGGGCACCGAAGTACAAATAGGAGCACGTATGTACAATCGGGG
66 TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATCGGGG
*
33906691 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCATG
1 ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
* * * *
33906756 TATGTGCAATCAAGGGTACCAAAGTATAAACAGGGGCACATATGTGCAATC
66 TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATC
33906807 ACTAATAATT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 104 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (120 bp):
ATACCAAAGTACAAACAAGGGCATGTATGTGCAATCAGGGGTACCAAAGTACAAACAAGGGCACG
TATGTGCAATCAAGGGCACCAAAGTACAAACAGGAGCACATATGTACAATCGGGG
Found at i:33913589 original size:17 final size:17
Alignment explanation
Indices: 33913567--33913599 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
33913557 TCAATTCAAT
33913567 CATTTATCGGGATTTAA
1 CATTTATCGGGATTTAA
*
33913584 CATTTATCGGGCTTTA
1 CATTTATCGGGATTTA
33913600 TCCGATATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.42
Consensus pattern (17 bp):
CATTTATCGGGATTTAA
Found at i:33915974 original size:40 final size:40
Alignment explanation
Indices: 33915869--33916052 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
33915859 GGATTGATAC
* * *
33915869 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
33915909 CCGAGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
33915948 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
33915988 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
33916028 CCAGGCTAAGTCCCGAAGACATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
33916053 AGCTAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 32 0.24
40 101 0.76
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:33920822 original size:14 final size:16
Alignment explanation
Indices: 33920792--33920824 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
33920782 TTTTCTTTAT
33920792 TTTATTATTTATCATC
1 TTTATTATTTATCATC
33920808 TTTATT-TTT-TCATC
1 TTTATTATTTATCATC
33920822 TTT
1 TTT
33920825 CCAATTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTATTTATCATC
Found at i:33923468 original size:50 final size:49
Alignment explanation
Indices: 33923346--33923521 Score: 203
Period size: 50 Copynumber: 3.5 Consensus size: 49
33923336 TGAGGTCGCA
* * * *
33923346 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
33923397 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * * *
33923447 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
33923496 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
33923522 TGCTACCAGA
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 30 0.28
50 42 0.39
51 31 0.29
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:33923551 original size:101 final size:99
Alignment explanation
Indices: 33923346--33923532 Score: 218
Period size: 99 Copynumber: 1.9 Consensus size: 99
33923336 TGAGGTCGCA
* *
33923346 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCC-AAAACTGTGATCACATGTGTAGTACTAAG
** * *
33923411 TGCAGGCTACTACGTGTATTAGATGGTGAGGTCACG
65 TGCAGGCTACTAC-TGTACCAGATGCTGAGGTCAAG
* * * * *
33923447 TGTGTAGTACTAAGTGTAGGCTACTACGTGTA-CC-AGACTGTTGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTG-TGATCACATGTGTAGTACTAAG
33923510 TGCAGGCTACTA-TGCTACCAGAT
65 TGCAGGCTACTACTG-TACCAGAT
33923533 AGCTTCGGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
97 2 0.03
98 11 0.15
99 31 0.41
100 2 0.03
101 29 0.39
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAACTGTGATCACATGTGTAGTACTAAGT
GCAGGCTACTACTGTACCAGATGCTGAGGTCAAG
Found at i:33926054 original size:30 final size:30
Alignment explanation
Indices: 33926020--33926079 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
33926010 CTTTAATACG
33926020 AACTTTGGCAA-AATTACA-TTTTTGCCCCTA
1 AACTTTGG-AATAATTACACTTTTT-CCCCTA
*
33926050 AACTTTTGAATAATTACACTTTTTCCCCTA
1 AACTTTGGAATAATTACACTTTTTCCCCTA
33926080 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 2 0.07
30 20 0.74
31 5 0.19
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGAATAATTACACTTTTTCCCCTA
Found at i:33933471 original size:30 final size:29
Alignment explanation
Indices: 33933426--33933483 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
33933416 CTTTAATACG
*
33933426 AACTTTGGAAAAATTACATTTTTGCCCCTT
1 AACTTTGGAAAAATTACACTTTT-CCCCTT
* *
33933456 AACTTTTGAATAATTACACTTTTCCCCT
1 AACTTTGGAAAAATTACACTTTTCCCCT
33933484 AGGCTCGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTT
Found at i:33934783 original size:40 final size:40
Alignment explanation
Indices: 33934736--33934993 Score: 356
Period size: 40 Copynumber: 6.5 Consensus size: 40
33934726 GTATAAATAG
* * * ** * *
33934736 GGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAG
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* *
33934776 GGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAATAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* * *
33934816 GGGCACGTATGTGCAATTAGGGGTACCGAAGTACAAATAG
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
*
33934856 GGGCACGTATGTGCAATCAGGGGTA-CAAAGTACAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
*
33934895 GGGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
* * *
33934935 GGGCACGTATGTGCAATCAAGGGTACCAAAGTATAAACAA
1 GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
33934975 GGGCACGTATGTGCAATCA
1 GGGCACGTATGTGCAATCA
33934994 CCAATAATTA
Statistics
Matches: 196, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 35 0.18
40 161 0.82
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (40 bp):
GGGCACGTATGTGCAATCAGGGGTACCGAAGTACAAACAA
Found at i:33934858 original size:20 final size:19
Alignment explanation
Indices: 33934762--33934931 Score: 67
Period size: 20 Copynumber: 8.6 Consensus size: 19
33934752 TTAGGAATAC
* *
33934762 CGAAGTACAAAGAGGGGCA
1 CGAAGTACAAATAGGGGTA
* *
33934781 CGTATGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
* * *
33934801 CCAAAGTACAAATAAGGGCA
1 -CGAAGTACAAATAGGGGTA
* * *
33934821 CGTATGTGCAATTAGGGGTA
1 CG-AAGTACAAATAGGGGTA
*
33934841 CCGAAGTACAAATAGGGGCA
1 -CGAAGTACAAATAGGGGTA
* *
33934861 CGTATGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
* * * *
33934881 CAAAGTACAAACAAGGGCA
1 CGAAGTACAAATAGGGGTA
*
33934900 CGTAAGTGC-AATCAGGGGTA
1 CG-AAGTACAAAT-AGGGGTA
33934920 CCGAAGTACAAA
1 -CGAAGTACAAA
33934932 CAAGGGCACG
Statistics
Matches: 104, Mismatches: 34, Indels: 24
0.64 0.21 0.15
Matches are distributed among these distances:
19 22 0.21
20 72 0.69
21 10 0.10
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.16
Consensus pattern (19 bp):
CGAAGTACAAATAGGGGTA
Found at i:33934863 original size:80 final size:80
Alignment explanation
Indices: 33934736--33934991 Score: 397
Period size: 80 Copynumber: 3.2 Consensus size: 80
33934726 GTATAAATAG
* ** *
33934736 GGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAGGGGCACGTATGTGCAATCAGGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
*
33934801 CCAAAGTACAAATAA
66 CCAAAGTACAAACAA
* *
33934816 GGGCACGTATGTGCAATTAGGGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATCAGGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
33934881 -CAAAGTACAAACAA
66 CCAAAGTACAAACAA
* * *
33934895 GGGCACGTAAGTGCAATCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTA
1 GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
*
33934960 CCAAAGTATAAACAA
66 CCAAAGTACAAACAA
*
33934975 GGGCACGTATGTGCAAT
1 GGGCACGTAAGTGCAAT
33934992 CACCAATAAT
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
79 73 0.45
80 89 0.55
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.17
Consensus pattern (80 bp):
GGGCACGTAAGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTA
CCAAAGTACAAACAA
Found at i:33934931 original size:119 final size:120
Alignment explanation
Indices: 33934730--33934993 Score: 368
Period size: 119 Copynumber: 2.2 Consensus size: 120
33934720 TACCGGGTAT
* * * * * * *
33934730 AAATAGGGGCACGTAAGTGCATTTAGGAATACCGAAGTACAAAGAGGGGCACGTATGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
* * * *
33934795 GGGGTACCAAAGTACAAATAAGGGCACGTATGTGCAATTAGGGGTACCGAAGTAC
66 GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
**
33934850 AAATAGGGGCACGTATGTGCAATCAGGGGTA-CAAAGTACAAACAAGGGCACGTAAGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
* *
33934914 GGGGTACCGAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAT
66 GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
* *
33934969 AAACAAGGGCACGTATGTGCAATCA
1 AAATAGGGGCACGTATGTGCAATCA
33934994 CCAATAATTA
Statistics
Matches: 127, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
119 101 0.80
120 26 0.20
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (120 bp):
AAATAGGGGCACGTATGTGCAATCAGGAATACCAAAGTACAAACAAGGGCACGTAAGTGCAATCA
GGGGTACCAAAGTACAAACAAGGGCACGTATGTGCAATCAAGGGTACCAAAGTAC
Found at i:33936707 original size:36 final size:36
Alignment explanation
Indices: 33936625--33936707 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
33936615 CATATTATAA
33936625 TCACTATCACATGGCATGAATAACATAACCACATAT
1 TCACTATCACATGGCATGAATAACATAACCACATAT
* * * **
33936661 TTACTATCACATGGCATGCATAACATACCCATGTAT
1 TCACTATCACATGGCATGAATAACATAACCACATAT
*
33936697 TCACTTTCACA
1 TCACTATCACA
33936708 ACAATCATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (36 bp):
TCACTATCACATGGCATGAATAACATAACCACATAT
Found at i:33937671 original size:28 final size:28
Alignment explanation
Indices: 33937631--33937688 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
33937621 AGATTTATGG
*
33937631 TTCAAAGGATGTTGGAAATCAAGAGGAA
1 TTCAAAGGATGTTGGAAATCAAGAGAAA
33937659 TTCAAAGGATGTTGGAAATCAAGAGAAA
1 TTCAAAGGATGTTGGAAATCAAGAGAAA
33937687 TT
1 TT
33937689 AGGATTTGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.26, T:0.24
Consensus pattern (28 bp):
TTCAAAGGATGTTGGAAATCAAGAGAAA
Found at i:33940874 original size:20 final size:20
Alignment explanation
Indices: 33940841--33940915 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
33940831 ATACGTGGGA
33940841 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
33940858 ATATGTTATGCACATGATATG
1 -TATGATATGCACATGATATG
33940879 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
33940899 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
33940916 GTATTCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 7 0.14
20 42 0.82
21 2 0.04
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:33941043 original size:52 final size:51
Alignment explanation
Indices: 33940965--33941094 Score: 203
Period size: 52 Copynumber: 2.6 Consensus size: 51
33940955 GAGGAAGTGC
*
33940965 AAAAGGGCTTATGCCCTAGTTTATTGAAAACGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTT-TGCCCCAATTTACCG
* *
33941017 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTTTGCCCCAATTTACCG
33941068 AAAAGGGCTT-TGCCCCAG-TTATT-AAAA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA
33941095 GAGGCTAGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
48 4 0.05
49 5 0.07
50 8 0.11
51 24 0.32
52 34 0.45
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAACGGCTTTGCCCCAATTTACCG
Found at i:33941062 original size:25 final size:26
Alignment explanation
Indices: 33940965--33941100 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
33940955 GAGGAAGTGC
*
33940965 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
33940991 AAAACGGCTTATGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
33941017 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
33941043 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
33941068 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
33941091 AAAAGAGGCT
1 AAAAG-GGCT
33941101 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.32
26 53 0.55
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:33943410 original size:53 final size:53
Alignment explanation
Indices: 33943307--33943410 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 53
33943297 TTCCTTTTTA
* * * *
33943307 AACTTACCATTGCTATGTCTTGACATAGTCTTACGTGGTATCCTTCCCTTATG
1 AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTATG
* * * *
33943360 AACTCACCATTGCTATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTA
33943411 CCGTAGTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCTATGCCTTGACATAGTCTTACATGGGATCCTTCCCTTATG
Found at i:33950691 original size:53 final size:53
Alignment explanation
Indices: 33950607--33950711 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
33950597 TTCCTTTTTA
* * * * *
33950607 AACTTACCATTGCTATGTCTTGACATAGTCTTACATGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTACCTTATG
* *
33950660 AACTCACCATTGCCATGCCTT-AGCATGGTCTTACATGGGATCTTTACCTTAT
1 AACTCACCATTGCCATGCCTTGA-CATAGTCTTACATGGGATCCTTACCTTAT
33950712 CGTAGTTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATAGTCTTACATGGGATCCTTACCTTATG
Found at i:33962308 original size:51 final size:51
Alignment explanation
Indices: 33962237--33962375 Score: 145
Period size: 51 Copynumber: 2.7 Consensus size: 51
33962227 CGCATGTATA
* * * *** *
33962237 GTACTAGGTGTAGGCTACTATGTGTGCTAGATAGCTTCGATCACATGTGTG
1 GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
* * *
33962288 GTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTGGGTCACAAGTGTG
1 GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
* * *
33962339 GTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTT
1 GTACTAAGTGAAGGCCACTATGTGTAA-AAGATAGCTT
33962376 TGACTACAAC
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 2 0.03
51 72 0.97
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (51 bp):
GTACTAAGTGAAGGCCACTATGTGTAAAAGATAGCTTCGATCACAAGTGTG
Found at i:33967784 original size:27 final size:26
Alignment explanation
Indices: 33967736--33967787 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
33967726 GCGAGGCTAC
*
33967736 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
33967762 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
33967788 TTGCGCGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33969597 original size:28 final size:28
Alignment explanation
Indices: 33969557--33969624 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
33969547 GCAATCAAAT
33969557 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
33969585 ATGGCATTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
**
33969613 ATGAAACTTAGT
1 ATGGCACTTAGT
33969625 TTGCAAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:33969635 original size:28 final size:28
Alignment explanation
Indices: 33969562--33969635 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
33969552 CAAATATGGC
* * **
33969562 ACTTAGTGTACGAAATATTGAGAATGGC
1 ACTTAGTGTGCAAAATATTGAGAATGAA
* * *
33969590 ATTTAGTGTGCGAGATATTGAGAATGAA
1 ACTTAGTGTGCAAAATATTGAGAATGAA
*
33969618 ACTTAGTTTGCAAAATAT
1 ACTTAGTGTGCAAAATAT
33969636 CGAATGATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (28 bp):
ACTTAGTGTGCAAAATATTGAGAATGAA
Found at i:33985812 original size:50 final size:49
Alignment explanation
Indices: 33985694--33985919 Score: 258
Period size: 50 Copynumber: 4.5 Consensus size: 49
33985684 CTTATACGCA
* *
33985694 TAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACAATCCGTTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAAC-ATCTGATACACG
* *
33985743 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CTCAACATCTGATACACG
* * * * * *
33985793 TAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAA--CATCTGA-TACACG
* *
33985844 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACTCAACA-TCTGATACACG
* *
33985894 TAGTAGCCTACACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
33985920 CGTGTATTCA
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
49 34 0.22
50 72 0.47
51 46 0.30
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACTCAACATCTGATACACG
Done.