Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 106 of 320
Found at i:34321745 original size:81 final size:81
Alignment explanation
Indices: 34321521--34321758 Score: 228
Period size: 81 Copynumber: 2.9 Consensus size: 81
34321511 TTTCATCCTA
* * * * * ** *
34321521 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
* *
34321586 CTA-TAATTTTTAGAAAG
66 C-AGTAA-TTTCACAAAG
* ** ** ***
34321603 TCAAGGGTATTTTTGTAATTTTTTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 -CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
*
34321668 TCGGTAATTTCACAAA-
65 TCAGTAATTTCACAAAG
* *
34321684 CTAGTGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAAG-GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
*
34321749 TTAGTAATTT
65 TCAGTAATTT
34321759 TGTAAATCGA
Statistics
Matches: 122, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
80 3 0.02
81 59 0.48
82 7 0.06
83 53 0.43
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
CAGTAATTTCACAAAG
Found at i:34321747 original size:54 final size:54
Alignment explanation
Indices: 34321521--34321773 Score: 222
Period size: 54 Copynumber: 4.6 Consensus size: 54
34321511 TTTCATCCTA
* * * * *
34321521 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAAC
* * * ** * *
34321575 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTTTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TCAAGGGTATTTCGGTAATTTTGTAAAC
* ** ***
34321631 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAAC
* * * *
34321684 CTAGTGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAAC
* ** *
34321739 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTA
34321774 AAACGATAAT
Statistics
Matches: 156, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
53 2 0.01
54 100 0.64
55 19 0.12
56 35 0.22
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTGTAAAC
Found at i:34321783 original size:27 final size:27
Alignment explanation
Indices: 34321752--34321908 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
34321742 GGGTATTTTA
*
34321752 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
34321779 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
34321806 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
34321833 GTAATTCTATAAATCGAGGATAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
34321860 ATAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
34321887 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
34321909 TTTTGGTAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:34321784 original size:54 final size:54
Alignment explanation
Indices: 34321724--34321909 Score: 214
Period size: 54 Copynumber: 3.4 Consensus size: 54
34321714 GGGGTATTTT
* * * **
34321724 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAAC
* * * * * *
34321778 GATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAT
1 GGTAATTCTGTAAATCGAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAAC
* * *
34321832 GGTAATTCTATAAATCGA-GG-ATAAAACGATAATTTTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCGAGGGTATAATA-G-TAATTTTGTAAATCGAGGGTAAAAC
34321886 GGTAATTCTGTAAATCGAGGGTAT
1 GGTAATTCTGTAAATCGAGGGTAT
34321910 TTTGGTAATT
Statistics
Matches: 107, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
52 3 0.03
53 3 0.03
54 97 0.91
55 2 0.02
56 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (54 bp):
GGTAATTCTGTAAATCGAGGGTATAATAGTAATTTTGTAAATCGAGGGTAAAAC
Found at i:34321800 original size:81 final size:81
Alignment explanation
Indices: 34321723--34321933 Score: 278
Period size: 81 Copynumber: 2.6 Consensus size: 81
34321713 AGGGGTATTT
* * * * * *
34321723 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGATAAAACGATAATTCTG
*
34321788 TAAATCGAGGGTAAAA
66 TAAATCAAGGGTAAAA
* *** * *
34321804 TGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGATAAAACGATAATTTTG
1 TGGTAATTCTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGATAAAACGATAATTCTG
34321869 TAAATCAAGGGTAAAA
66 TAAATCAAGGGTAAAA
* * *
34321885 CGGTAATTCTGTAAATCGAGGGTATTTTGGTAATTTTACAAATTGAGGA
1 TGGTAATTCTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGA
34321934 CATTTTAGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.33
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGATAAAACGATAATTCTG
TAAATCAAGGGTAAAA
Found at i:34321916 original size:27 final size:27
Alignment explanation
Indices: 34321606--34321921 Score: 188
Period size: 27 Copynumber: 11.7 Consensus size: 27
34321596 TAGAAAGTCA
* *
34321606 AGGGTATTTTTGTAATTTTTTAAATC-
1 AGGGTATTTTGGTAATTTTGTAAATCG
** *
34321632 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTGTAAATCG
* *** *
34321660 AGGGTATTTCGGTAATTTCACAAA-CT
1 AGGGTATTTTGGTAATTTTGTAAATCG
** *
34321686 AGTGGTATTTTGGTAATTTTACAAAT-T
1 AG-GGTATTTTGGTAATTTTGTAAATCG
* *
34321713 AGGGGTATTTTGGTAATTTTGTAAACCA
1 A-GGGTATTTTGGTAATTTTGTAAATCG
*
34321741 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
**** * *
34321768 AGGGTAAAACGATAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
*** * *
34321795 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTATTTTGGTAATTTTGTAAATCG
*** * *
34321822 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
* **** * *
34321849 AGGATAAAACGATAATTTTGTAAATCA
1 AGGGTATTTTGGTAATTTTGTAAATCG
**** *
34321876 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTTGGTAATTTTGTAAATCG
34321903 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
34321922 ACAAATTGAG
Statistics
Matches: 240, Mismatches: 44, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 234 0.98
28 3 0.01
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTGTAAATCG
Found at i:34329912 original size:120 final size:119
Alignment explanation
Indices: 34329681--34329938 Score: 292
Period size: 120 Copynumber: 2.2 Consensus size: 119
34329671 TTGAATGATG
* * * *
34329681 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGTGACTATATCCGGACTAAGATCTGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
**
34329746 TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
34329800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
* * * *
34329864 TGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
34329920 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34329939 TATGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
119 38 0.32
120 78 0.66
121 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:34329919 original size:40 final size:40
Alignment explanation
Indices: 34329681--34329905 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
34329671 TTGAATGATG
* * *
34329681 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
34329720 TCCGGACTAAGAT-CTGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34329760 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34329800 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
34329840 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
34329881 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34329906 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 18 0.11
40 148 0.88
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34337742 original size:39 final size:40
Alignment explanation
Indices: 34337698--34337844 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
34337688 GAGCATCGAT
*
34337698 AATCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTA
1 AATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
*
34337737 AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
34337777 AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
34337817 TAA-CCGGGCTATGTCCCGAAGGCATTTG
1 -AATCCGGGCTAAGTCCCGAAGGCATTTG
34337845 AACGAGTAGC
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 20 0.20
40 78 0.77
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
Found at i:34337851 original size:40 final size:40
Alignment explanation
Indices: 34337713--34337844 Score: 223
Period size: 40 Copynumber: 3.3 Consensus size: 40
34337703 GGACTAAGAT
34337713 CCGAAGGCA-TTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
34337752 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
34337792 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
34337832 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34337845 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
39 9 0.10
40 78 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:34337851 original size:80 final size:78
Alignment explanation
Indices: 34337713--34337867 Score: 215
Period size: 80 Copynumber: 2.0 Consensus size: 78
34337703 GGACTAAGAT
* **
34337713 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTA
34337777 AATCCGGGTTAAGTC
65 AATCC-GGTTAAGTC
*
34337792 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
34337856 ATATCCGGTTAA
64 AAATCCGGTTAA
34337868 ATTCGAAGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 17 0.25
80 49 0.72
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:34351677 original size:92 final size:93
Alignment explanation
Indices: 34351552--34351721 Score: 272
Period size: 92 Copynumber: 1.8 Consensus size: 93
34351542 GCCCCTAAGT
* *
34351552 GAACTCAGACTCAACTCAACGAGCTTGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
34351617 -CAGTTCGGATGCCTAGTTACATTTCAC
66 TCAGTTCGGATGCCTAGTTACATTTCAC
* *
34351644 GAACTCGGAGTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
*
34351708 ATGAGTTCGGATGC
65 ATCAGTTCGGATGC
34351722 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
91 2 0.03
92 58 0.82
93 11 0.15
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
TCAGTTCGGATGCCTAGTTACATTTCAC
Found at i:34351715 original size:46 final size:46
Alignment explanation
Indices: 34351547--34351718 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
34351537 AACCCGCCCC
* *
34351547 TAAGTGAACTCAGACTCAACTCAACGAGCTT-GGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
34351593 TAAGTGAACTCGGACTCAACTCAAC-AGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
34351640 TCA-CGAACTCGGAGTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
34351685 TAAGTGAACTCGGAATCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
34351719 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 13, Indels: 22
0.74 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 6 0.06
46 70 0.69
47 10 0.10
48 1 0.01
49 4 0.04
50 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:34352167 original size:29 final size:29
Alignment explanation
Indices: 34352135--34352192 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
34352125 ATTTAATACG
*
34352135 AACTTTGGAAAAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTGCCCCTA
* * *
34352164 AACTTTTGCATAATTACACTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTGCCCCTA
34352193 GGCTCGGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTGCCCCTA
Found at i:34354389 original size:43 final size:43
Alignment explanation
Indices: 34354326--34354481 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 43
34354316 AGCTCGTACA
* * *
34354326 ATGCC-ATATCCCAAATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATATCG
* * *
34354368 ATGCCAATGTCCCAAACATGGTCTTACATGAAATCATATAACG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATATCG
* ** *
34354411 ATGCCAATGTCTCAAACATGGTCTTACACATAATCGCAATAT-G
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAC-ATATCG
* *
34354454 ATGCCAATGTCTCAGACATGGTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
34354482 CATAACCACG
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 5 0.05
43 90 0.92
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACATATCG
Found at i:34358204 original size:27 final size:27
Alignment explanation
Indices: 34358174--34358349 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
34358164 ATATTGAGTC
* * * *
34358174 CGCACACTCAGTGCAATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * *
34358201 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
*
34358228 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTCAAA-T
** *
34358256 CGCACACTTAGTGCCGCATGGTC-AAT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * * **
34358282 TGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAAT
34358309 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
34358336 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34358350 TGTACAATTT
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
26 19 0.15
27 85 0.68
28 21 0.17
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:34367986 original size:40 final size:40
Alignment explanation
Indices: 34367927--34368239 Score: 502
Period size: 40 Copynumber: 7.8 Consensus size: 40
34367917 GAACATTGGA
*
34367927 ATATATCC-GGCTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGC-TAAGACCCGAAGGCAATTATGCGAGTTG
*
34367967 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
34368007 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
34368047 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34368087 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
34368127 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34368167 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
34368207 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
34368240 TTTGCGGCTG
Statistics
Matches: 253, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 250 0.99
41 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:34375715 original size:40 final size:40
Alignment explanation
Indices: 34375660--34375847 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
34375650 GAGCATTGGA
34375660 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34375700 ATATATCCGGGCTAAGACCCGAAGGCAATTATACGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34375740 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
34375780 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
34375820 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
34375848 CTGTGTTTGC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:34382574 original size:40 final size:40
Alignment explanation
Indices: 34382392--34382614 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34382382 TCCTCGTTCA
* * * * *
34382392 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34382431 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34382471 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34382511 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
34382551 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34382591 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34382615 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34382623 original size:41 final size:41
Alignment explanation
Indices: 34382546--34382623 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34382536 TTAGTATCTC
* * *
34382546 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34382587 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34382624 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34386319 original size:40 final size:40
Alignment explanation
Indices: 34386271--34386498 Score: 420
Period size: 40 Copynumber: 5.7 Consensus size: 40
34386261 GCAAACACAG
* * *
34386271 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34386311 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34386351 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34386391 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34386431 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34386471 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
34386499 TCCAATGCTC
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:34389502 original size:40 final size:40
Alignment explanation
Indices: 34389454--34389641 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
34389444 GCAAACACAG
* * *
34389454 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34389494 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34389534 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34389574 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34389614 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
34389642 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:34398754 original size:40 final size:40
Alignment explanation
Indices: 34398706--34398893 Score: 340
Period size: 40 Copynumber: 4.7 Consensus size: 40
34398696 GCAAACACAG
* * *
34398706 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
34398746 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34398786 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34398826 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
34398866 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
34398894 TCCAATGCTC
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:34406773 original size:40 final size:40
Alignment explanation
Indices: 34406591--34406813 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
34406581 TCCTCGTTCA
* * * * *
34406591 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34406630 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34406670 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34406710 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
34406750 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34406790 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34406814 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34406822 original size:41 final size:41
Alignment explanation
Indices: 34406745--34406822 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34406735 TTAGTATCTC
* * *
34406745 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34406786 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34406823 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34412990 original size:43 final size:43
Alignment explanation
Indices: 34412932--34413080 Score: 126
Period size: 42 Copynumber: 3.5 Consensus size: 43
34412922 CAATGCCAAC
*
34412932 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTAT
** * *
34412975 GTCCCAGACAGGGTCTTACA-CAAAATCAGATA-CGATGCCGAT
1 GTCCCAGACAGGGTCTTACATGTAATTCA-ATATCGATGCCTAT
* * * *
34413017 GTCCCAGACATGGTCTTACATGTGAATCTCAA-ATCAAAGCCTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGCCTAT
** *
34413061 GTCTGAGACATGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
34413081 CGATATTTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 11
0.77 0.14 0.10
Matches are distributed among these distances:
42 32 0.38
43 22 0.26
44 28 0.33
45 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:34418036 original size:25 final size:25
Alignment explanation
Indices: 34418008--34418092 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
34417998 AGACCATGCC
34418008 AAGGCATGGCATTGATAAGTTCTAT
1 AAGGCATGGCATTGATAAGTTCTAT
* * * *
34418033 AAGGCAAGGAAATCATG-TAAG-ACCAT
1 AAGGCATGG-CAT--TGATAAGTTCTAT
34418059 GCCAAGGCATGGCATTGATAAGTTCTAT
1 ---AAGGCATGGCATTGATAAGTTCTAT
34418087 AAGGCA
1 AAGGCA
34418093 AGGAAATCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
25 14 0.32
26 7 0.16
27 8 0.18
28 7 0.16
29 8 0.18
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (25 bp):
AAGGCATGGCATTGATAAGTTCTAT
Found at i:34418048 original size:54 final size:54
Alignment explanation
Indices: 34417984--34418245 Score: 348
Period size: 54 Copynumber: 4.9 Consensus size: 54
34417974 TTGGTAAGAT
34417984 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
*
34418038 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * *
34418092 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTAATATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
** * * *
34418147 AAAGG-TCCCATGTAACACCATGCCAAGGCATGGCATTGGTGAGTT-TATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * * *
34418200 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC
34418246 AAAAAGGAAA
Statistics
Matches: 185, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
52 4 0.02
53 41 0.22
54 96 0.52
55 40 0.22
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:34420423 original size:18 final size:18
Alignment explanation
Indices: 34420398--34420434 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
34420388 TGTGTATTTG
34420398 TATGAATTATGTTGTGAT
1 TATGAATTATGTTGTGAT
34420416 TATGAATTATGTTGTGAT
1 TATGAATTATGTTGTGAT
34420434 T
1 T
34420435 GATCGATAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (18 bp):
TATGAATTATGTTGTGAT
Found at i:34425732 original size:31 final size:31
Alignment explanation
Indices: 34425697--34425763 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
34425687 TTTCGAAAGT
34425697 AAACCAAAATATCATCTATAAATACAACCAC
1 AAACCAAAATATCATCTATAAATACAACCAC
*
34425728 AAACCAAAATATCATCTATAAATACCACCAC
1 AAACCAAAATATCATCTATAAATACAACCAC
34425759 AAACC
1 AAACC
34425764 TGTCTAAATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (31 bp):
AAACCAAAATATCATCTATAAATACAACCAC
Found at i:34427912 original size:39 final size:39
Alignment explanation
Indices: 34427802--34427984 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 39
34427792 GAATGATGTC
* * * *
34427802 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
* * *
34427841 CCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTACTAATT
1 -CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
34427881 CTGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
34427920 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
34427961 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
34427985 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 32 0.27
40 75 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:34449715 original size:21 final size:22
Alignment explanation
Indices: 34449671--34449712 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34449661 CGATGGATGC
*
34449671 GCATTGAGTTATAATATGTAAT
1 GCATTGAGTTATAAAATGTAAT
34449693 GCATT-AGTTAGTAAAATGTA
1 GCATTGAGTTA-TAAAATGTA
34449713 TGCCATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (22 bp):
GCATTGAGTTATAAAATGTAAT
Found at i:34449719 original size:22 final size:23
Alignment explanation
Indices: 34449667--34449719 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
34449657 TAAACGATGG
*
34449667 ATGCGCATTGAGTTATAATATGTA
1 ATGC-CATTGAGTTATAAAATGTA
34449691 ATG-CATT-AGTTAGTAAAATGT-
1 ATGCCATTGAGTTA-TAAAATGTA
34449712 ATGCCATT
1 ATGCCATT
34449720 TATATGTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 8 0.31
22 15 0.58
24 3 0.12
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (23 bp):
ATGCCATTGAGTTATAAAATGTA
Found at i:34451282 original size:47 final size:47
Alignment explanation
Indices: 34451228--34451421 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
34451218 TTAGGATTTT
** * * *
34451228 ATGTGATGAATGTGAATGTGTATACATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34451275 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34451322 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34451369 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34451416 ATGTGA
1 ATGTGA
34451422 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34451328 original size:22 final size:22
Alignment explanation
Indices: 34451257--34451328 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
34451247 GTATACATGA
34451257 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
34451279 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
34451304 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
34451326 GAT
1 GAT
34451329 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:34451377 original size:25 final size:25
Alignment explanation
Indices: 34451302--34451377 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
34451292 ATGCATATAT
34451302 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
34451327 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
34451349 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
34451374 GTGA
1 GTGA
34451378 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:34451549 original size:52 final size:48
Alignment explanation
Indices: 34451391--34451577 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
34451381 TGAACATGCA
*
34451391 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
34451439 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
34451487 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
34451539 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34451578 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 1 0.01
50 2 0.02
51 1 0.01
52 40 0.32
53 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:34451561 original size:100 final size:96
Alignment explanation
Indices: 34451392--34451577 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
34451382 GAACATGCAT
*
34451392 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
34451457 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
34451488 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGAAATGTATATGTGGTAAA
*
34451552 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
34451578 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
98 1 0.01
99 1 0.01
100 52 0.64
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:34451758 original size:13 final size:13
Alignment explanation
Indices: 34451740--34451767 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34451730 AAGACCCGAT
34451740 GACTACGTGTGGA
1 GACTACGTGTGGA
34451753 GACTACGTGTGGA
1 GACTACGTGTGGA
34451766 GA
1 GA
34451768 TTATGTCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.21
Consensus pattern (13 bp):
GACTACGTGTGGA
Found at i:34451844 original size:37 final size:37
Alignment explanation
Indices: 34451754--34451844 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
34451744 ACGTGTGGAG
* *
34451754 ACTACGTGTGGAGATTATGTCCGAGTAAGACCCGATG
1 ACTACGTGTGGAGATTTTGTCCGAGTAAGACCCGATA
* *
34451791 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCTGATA
1 ACTACGTGTGGAGATTTTGTCCGAGTAAGACCCGATA
*
34451828 ACTTCGTGTGGAGATTT
1 ACTACGTGTGGAGATTT
34451845 CGTCTGAGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (37 bp):
ACTACGTGTGGAGATTTTGTCCGAGTAAGACCCGATA
Found at i:34454454 original size:17 final size:17
Alignment explanation
Indices: 34454423--34454455 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
34454413 TAACGCAAGG
34454423 GACCTTTTCATGATCCC
1 GACCTTTTCATGATCCC
34454440 GACCTGTTTCA-GATCC
1 GACCT-TTTCATGATCC
34454456 GTCACTGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.33, G:0.15, T:0.33
Consensus pattern (17 bp):
GACCTTTTCATGATCCC
Found at i:34459775 original size:41 final size:41
Alignment explanation
Indices: 34459730--34459811 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
34459720 ATGATTAAAG
34459730 AATGGCAGGTGAATACTTGGTAATGATTAGCTTATAATATA
1 AATGGCAGGTGAATACTTGGTAATGATTAGCTTATAATATA
*
34459771 AATGGCAGGTGAATACTTGGTAATGATTAGCTTATGATATA
1 AATGGCAGGTGAATACTTGGTAATGATTAGCTTATAATATA
34459812 GCTAAACAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.34
Consensus pattern (41 bp):
AATGGCAGGTGAATACTTGGTAATGATTAGCTTATAATATA
Found at i:34469610 original size:50 final size:49
Alignment explanation
Indices: 34469498--34469673 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 49
34469488 TAAGGTCGCA
*** * * *
34469498 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTA-CC--AGACTGTAGGTCACG
* * **
34469549 TGTGTCGTACTAAGTGCAGGCTGCTACATGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACT-GT-AGGTCACG
* * * * *
34469599 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTAGGTCACG
34469648 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
34469674 TGCGTACCAG
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 30 0.30
50 39 0.39
51 28 0.28
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGACTGTAGGTCACG
Found at i:34469658 original size:49 final size:49
Alignment explanation
Indices: 34469491--34469684 Score: 167
Period size: 49 Copynumber: 3.9 Consensus size: 49
34469481 TCTATTGTAA
* * * *
34469491 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACT-AT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CC--AGACTGTT
* * * * ** ** *
34469542 GATCACGTGTGTCGTACTAAGTGCAGGCTGCTACATGTATTAGA-TGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACT-GT-T
* * *
34469592 GGTCACGTGTGTAGTACTAAGTGCGGGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTT
* *
34469641 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA
34469685 TAGCTTCGGC
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
47 1 0.01
48 2 0.02
49 39 0.35
50 39 0.35
51 32 0.28
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGACTGTT
Found at i:34475945 original size:16 final size:17
Alignment explanation
Indices: 34475926--34475959 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
34475916 CCGAATGTAC
34475926 TTTTCATATACA-CATA
1 TTTTCATATACATCATA
*
34475942 TTTTCATTTACATCATA
1 TTTTCATATACATCATA
34475959 T
1 T
34475960 ATAATTTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTCATATACATCATA
Found at i:34476186 original size:43 final size:43
Alignment explanation
Indices: 34476139--34476268 Score: 183
Period size: 43 Copynumber: 3.1 Consensus size: 43
34476129 AATGCCAACG
34476139 TCCCAGACATGGTCTTACATGTAATCACATATCAATGCCACTA
1 TCCCAGACATGGTCTTACATGTAATCACATATCAATGCCACTA
* * * * * *
34476182 TCCCAGACAGGGTCTTACACG-AATCAAATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCAATGCCACTA
*
34476223 TCCCAAACATGGTCTTACATGTAATCACATATCAATGCCACTA
1 TCCCAGACATGGTCTTACATGTAATCACATATCAATGCCACTA
34476266 TCC
1 TCC
34476269 TAGCTATTCC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 26 0.36
42 16 0.22
43 30 0.42
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.25
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCAATGCCACTA
Found at i:34476237 original size:41 final size:42
Alignment explanation
Indices: 34476125--34476262 Score: 161
Period size: 43 Copynumber: 3.3 Consensus size: 42
34476115 CACACATATC
* * *
34476125 ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
* * *
34476167 ATATCAATGCCACTATCCCAGACAGGGTCTTACACG-AATCAA
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
* * * *
34476209 ATACGATGCCAATGTCCCAAACATGGTCTTACATGTAATCAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
34476251 ATATCAATGCCA
1 ATA-CAATGCCA
34476263 CTATCCTAGC
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
41 26 0.33
42 19 0.24
43 34 0.43
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
Found at i:34479244 original size:46 final size:46
Alignment explanation
Indices: 34479092--34479259 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 46
34479082 TGTGTAAGCT
* * *
34479092 AGTGTAAGACATGTCTGGGACATACATCAGCCA-C-ATTATGAG-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGA-GA-GAGTAGCC
* *
34479138 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAAGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAG-AGAGTAGCC
* * * * *
34479186 AGTGTAAAACATGTATGGGACATGCTTCGGCCTCGAG-GCGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAGAGT-AGCC
*
34479232 AGTGTAAGACATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
34479260 AGCTACGAGA
Statistics
Matches: 98, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
44 3 0.03
46 46 0.47
47 30 0.31
48 17 0.17
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAGAGTAGCC
Found at i:34491269 original size:40 final size:40
Alignment explanation
Indices: 34491214--34491397 Score: 282
Period size: 40 Copynumber: 4.6 Consensus size: 40
34491204 CGGATGATAA
* *
34491214 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
34491254 CCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
34491293 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
34491333 CCGGGCTAAGTCCCGAAAGCATTTGTGCGAGTTACTTTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TAAAT
34491373 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34491398 AGCAAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 35 0.26
40 96 0.72
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:34491345 original size:79 final size:80
Alignment explanation
Indices: 34491211--34491397 Score: 315
Period size: 79 Copynumber: 2.4 Consensus size: 80
34491201 ATTCGGATGA
*
34491211 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGTCCCG-AAGCAT
1 TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAAGCAT
34491275 TTGTGCGAGTTA-TT
66 TTGTGCGAGTTACTT
* * *
34491289 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAAGCA
1 -TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAAGCA
34491354 TTTGTGCGAGTTACTT
65 TTTGTGCGAGTTACTT
34491370 TAACCGGGCTAAGTCCCGAAGGCATTTG
1 TAACCGGGCTAAGTCCCGAAGGCATTTG
34491398 AGCAAGTAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
79 54 0.53
80 45 0.45
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
TAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAAGCAT
TTGTGCGAGTTACTT
Found at i:34491411 original size:80 final size:79
Alignment explanation
Indices: 34491210--34491420 Score: 304
Period size: 79 Copynumber: 2.7 Consensus size: 79
34491200 TATTCGGATG
* *
34491210 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTAAATCCGGGCTAAGTCCCGAAGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATCCGGGCTAAGTCCCGAAGCA
34491274 TTTGTGCGAGTTATT
65 TTTGTGCGAGTTATT
* *
34491289 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAAGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCG-AAGC
34491353 ATTTGTGCGAGTTACTT
64 ATTTGTGCGAGTTA-TT
* *
34491370 -TAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATTC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAA
34491421 ATTCTGAAGG
Statistics
Matches: 120, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
79 61 0.51
80 57 0.47
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGCAT
TTGTGCGAGTTATT
Found at i:34496693 original size:48 final size:48
Alignment explanation
Indices: 34496624--34497251 Score: 1049
Period size: 48 Copynumber: 13.0 Consensus size: 48
34496614 ATATACACAC
* * * *
34496624 ATCTCCTACATATTGCTCATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
34496672 CTCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34496720 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34496768 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34496816 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
34496864 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
34496912 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34496960 GTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC--AT
34497010 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34497058 GTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34497106 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
34497154 ATCTCAAACATATTTCACATTAGCCATTCAGCTTTACTACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
34497202 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
34497250 AT
1 AT
34497252 TTATCTTGTA
Statistics
Matches: 550, Mismatches: 28, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
48 503 0.91
50 47 0.09
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:34500718 original size:28 final size:27
Alignment explanation
Indices: 34500677--34500776 Score: 83
Period size: 28 Copynumber: 3.6 Consensus size: 27
34500667 GAAACACACT
* * *
34500677 TCGCATACACAGTGCCCACTGACTGATT
1 TCGCACACATAGTGCCCACT-ACTGATC
* * ** *
34500705 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGC-CCACTACTGATC
34500733 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCC-C-ACTACTGATC
*
34500762 TGGCACACATAGTGC
1 TCGCACACATAGTGC
34500777 TCAGTTGAAG
Statistics
Matches: 55, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
27 1 0.02
28 31 0.56
29 23 0.42
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (27 bp):
TCGCACACATAGTGCCCACTACTGATC
Found at i:34500768 original size:57 final size:57
Alignment explanation
Indices: 34500677--34500806 Score: 158
Period size: 57 Copynumber: 2.3 Consensus size: 57
34500667 GAAACACACT
* * *
34500677 TCGCATACACAGTGCC-CACTGACTGATTTCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCCTCACTGACTGATCTCGCACACATAGTGCTCAG-TTAAAGAAC
* * *
34500733 TCGCACACATAGTGCCTCAACT-ACTGATCTGGCACACATAGTGCTCAGTTGAAGAGC
1 TCGCACACATAGTGCCTC-ACTGACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
*
34500790 TTGCACACATAGTGCCT
1 TCGCACACATAGTGCCT
34500807 TATAATTCCA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
56 14 0.22
57 46 0.72
58 4 0.06
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (57 bp):
TCGCACACATAGTGCCTCACTGACTGATCTCGCACACATAGTGCTCAGTTAAAGAAC
Found at i:34500796 original size:28 final size:27
Alignment explanation
Indices: 34500705--34500804 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
34500695 CTGACTGATT
34500705 TCGCACACATAGTGCTC-GATTAAAGAAC
1 TCGCACACATAGTGCTCAG-TT-AAGAAC
** * *
34500733 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCAGTTA-AGAAC
* *
34500762 TGGCACACATAGTGCTCAGTTGAAGAGC
1 TCGCACACATAGTGCTCAGTT-AAGAAC
*
34500790 TTGCACACATAGTGC
1 TCGCACACATAGTGC
34500805 CTTATAATTC
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
28 37 0.64
29 21 0.36
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (27 bp):
TCGCACACATAGTGCTCAGTTAAGAAC
Found at i:34500871 original size:40 final size:40
Alignment explanation
Indices: 34500816--34500971 Score: 285
Period size: 40 Copynumber: 3.9 Consensus size: 40
34500806 TTATAATTCC
* *
34500816 AGCACGAATGCTCTTCAGGACTTAGCCCGTATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
34500856 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
34500896 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
*
34500936 AGCACGAATGCTCTTTGGGACTTAGCCCGGATATAT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
34500972 AACTCTCAAT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:34502430 original size:48 final size:48
Alignment explanation
Indices: 34502359--34503076 Score: 1169
Period size: 48 Copynumber: 15.0 Consensus size: 48
34502349 ATATACACAC
* * * *
34502359 ATCTCCTACATATTGCTCATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
34502407 CTCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
34502455 ATCTCATACATATTCCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502503 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
34502551 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502597 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502643 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502691 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502739 ATCTCATACATATTTCACATTAGCCATTAGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502787 GTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC--AT
34502837 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502885 GTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
34502933 ATCTCATACATATTTCACATTAGCCA-T-GGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
34502979 ATCTCAAACATATTTCACATTAGCCATTCAGCTTTACTACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
34503027 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
34503075 AT
1 AT
34503077 TTATCTTGTA
Statistics
Matches: 633, Mismatches: 31, Indels: 12
0.94 0.05 0.02
Matches are distributed among these distances:
46 133 0.21
47 2 0.00
48 451 0.71
50 47 0.07
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:34508284 original size:25 final size:25
Alignment explanation
Indices: 34508226--34508295 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
34508216 GTTATAAATG
*
34508226 GTAAGCTCCA-CCGAGCTGAATAACC
1 GTAAGCT-CATCCGAGCTAAATAACC
34508251 GTAAGCTCATCCGAGCTAAATAA-C
1 GTAAGCTCATCCGAGCTAAATAACC
**
34508275 GATAAGCTCATAAGAGCTAAA
1 G-TAAGCTCATCCGAGCTAAA
34508296 ATCGGTAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.10
25 36 0.90
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.19
Consensus pattern (25 bp):
GTAAGCTCATCCGAGCTAAATAACC
Found at i:34509648 original size:37 final size:37
Alignment explanation
Indices: 34509602--34509719 Score: 117
Period size: 37 Copynumber: 3.4 Consensus size: 37
34509592 AAAAATAATG
*
34509602 TTATTTTAATAGTTTAATATTAAATTTAATTTAATAC
1 TTATCTTAATAGTTTAATATTAAATTTAATTTAATAC
34509639 TTATCTTAATAG--T-AT-TT-AA-TTAATTTAATA-
1 TTATCTTAATAGTTTAATATTAAATTTAATTTAATAC
* * * *
34509669 TTAATGTGATTA-TCTTAATATTAGATTTAATTTAATAC
1 TT-ATCTTAATAGT-TTAATATTAAATTTAATTTAATAC
34509707 TTATCTTAATAGT
1 TTATCTTAATAGT
34509720 ATTTCATTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
30 2 0.03
31 17 0.27
32 2 0.03
33 3 0.05
34 4 0.06
35 3 0.05
36 1 0.02
37 28 0.44
38 3 0.05
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.53
Consensus pattern (37 bp):
TTATCTTAATAGTTTAATATTAAATTTAATTTAATAC
Found at i:34509665 original size:31 final size:30
Alignment explanation
Indices: 34509627--34509740 Score: 93
Period size: 31 Copynumber: 3.5 Consensus size: 30
34509617 AATATTAAAT
34509627 TTAATTTAATACTTATCTTAATAGTATTTAA
1 TTAATTTAATA-TTATCTTAATAGTATTTAA
* * **
34509658 TTAATTTAATATTAATGTGATTATCTTAATATTAGA
1 TTAATTTAATATT-ATCT--TAATAGT-AT-TTA-A
*
34509694 TTTAATTTAATACTTATCTTAATAGTATTTCA
1 -TTAATTTAATA-TTATCTTAATAGTATTTAA
*
34509726 TTAATATAATATTAT
1 TTAATTTAATATTAT
34509741 AGTGATTATC
Statistics
Matches: 65, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
30 6 0.09
31 24 0.37
32 1 0.02
33 6 0.09
34 4 0.06
35 7 0.11
36 1 0.02
37 14 0.22
38 2 0.03
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.52
Consensus pattern (30 bp):
TTAATTTAATATTATCTTAATAGTATTTAA
Found at i:34509711 original size:68 final size:68
Alignment explanation
Indices: 34509615--34509768 Score: 240
Period size: 68 Copynumber: 2.2 Consensus size: 68
34509605 TTTTAATAGT
*
34509615 TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTAATTAATTTAATATTA-ATGTGAT
1 TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTAATTAATATAATATTATA-GTGAT
34509679 TATC
65 TATC
* *
34509683 TTAATATTAGATTTAATTTAATACTTATCTTAATAGTATTTCATTAATATAATATTATAGTGATT
1 TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTAATTAATATAATATTATAGTGATT
34509748 ATC
66 ATC
34509751 TTTTAA-ATTAAATTTAAT
1 --TTAATATTAAATTTAAT
34509769 GCTTATCTTG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
68 63 0.80
69 12 0.15
70 4 0.05
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (68 bp):
TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTAATTAATATAATATTATAGTGATT
ATC
Found at i:34515904 original size:31 final size:31
Alignment explanation
Indices: 34515869--34515942 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
34515859 CGGGTTAGGG
*
34515869 ACACGGGCGTGTGTGACCACACGGTCAACCT
1 ACACGGGCATGTGTGACCACACGGTCAACCT
34515900 ACACGGGCATGTGTGACCACACGGTCAACCT
1 ACACGGGCATGTGTGACCACACGGTCAACCT
*
34515931 ACACAGGCATGT
1 ACACGGGCATGT
34515943 CTCCAGCTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.26, C:0.31, G:0.27, T:0.16
Consensus pattern (31 bp):
ACACGGGCATGTGTGACCACACGGTCAACCT
Found at i:34523874 original size:17 final size:17
Alignment explanation
Indices: 34523828--34523875 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
34523818 ATAAGGGACA
*
34523828 AATTGATTG-A-GAATG
1 AATTGATTGAATGTATG
*
34523843 AA-TGA-TGACTGTATG
1 AATTGATTGAATGTATG
34523858 AATTGATTGAATGTATG
1 AATTGATTGAATGTATG
34523875 A
1 A
34523876 GAAAAGTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
13 2 0.08
14 3 0.12
15 8 0.31
16 3 0.12
17 10 0.38
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (17 bp):
AATTGATTGAATGTATG
Found at i:34539836 original size:23 final size:23
Alignment explanation
Indices: 34539810--34539877 Score: 64
Period size: 28 Copynumber: 2.7 Consensus size: 23
34539800 GATGGATTAT
34539810 ATTATTCTGGTGTGTTTGGGAGG
1 ATTATTCTGGTGTGTTTGGGAGG
*
34539833 ATTATATGATACTGGTGTGTTTTGGAGG
1 A-T-TAT--T-CTGGTGTGTTTGGGAGG
* *
34539861 ATCATACTGGTGTGTTT
1 ATTATTCTGGTGTGTTT
34539878 TGGTTGGACA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
23 12 0.32
24 1 0.03
25 3 0.08
26 2 0.05
27 2 0.05
28 17 0.46
ACGTcount: A:0.18, C:0.06, G:0.32, T:0.44
Consensus pattern (23 bp):
ATTATTCTGGTGTGTTTGGGAGG
Found at i:34539836 original size:28 final size:28
Alignment explanation
Indices: 34539783--34539862 Score: 124
Period size: 28 Copynumber: 2.8 Consensus size: 28
34539773 CACTTTGTGC
34539783 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
34539812 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
34539840 GATACTGGTGTGTTTTGGAGGAT
1 TATTCTGGTGTGTTTTGGAGGAT
34539863 CATACTGGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 29 0.62
29 18 0.38
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:34543862 original size:48 final size:48
Alignment explanation
Indices: 34543791--34544026 Score: 264
Period size: 48 Copynumber: 4.9 Consensus size: 48
34543781 GACAATTGGG
* *
34543791 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATAAGCAT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
* *
34543839 TGATATGTGTA-CTAGTGTAAGACCATGTTTCGGACATGGCATC-GCCA-
1 TGATATGTG-AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT
* * * * *
34543886 -CATTATGAGAGCTAGTGTAAGACCATGTCTAGGAAATGGCATCGGCAT
1 TGA-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
* * * * *
34543934 TGAGATGAGAGCTTGTGTAAGACCATGTTTGGGACATGGCATCAGCCT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
* * *
34543982 CGACATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAG
34544027 TGATTTACCC
Statistics
Matches: 158, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
46 2 0.01
47 37 0.23
48 118 0.75
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT
Found at i:34543969 original size:95 final size:96
Alignment explanation
Indices: 34543801--34544026 Score: 305
Period size: 95 Copynumber: 2.4 Consensus size: 96
34543791 TGATATGTGT
* * *
34543801 GCTAGTGTAAGACCATGTCTGGGACATGGCATAAGCATTGATATGTGTACTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGTACTAGTGTAAGACCATG
*
34543866 TTTCGGACATGGCATC-GCCAC-ATTATGAGA
66 TTTCGGACATGGCATCAGCCACGA-CATGAGA
* * * *
34543896 GCTAGTGTAAGACCATGTCTAGGAAATGGCATCGGCATTGAGATGAG-AGCTTGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGTA-CTAGTGTAAGACCAT
* * *
34543960 GTTTGGGACATGGCATCAGCCTCGACATGTGA
65 GTTTCGGACATGGCATCAGCCACGACATGAGA
*
34543992 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG
34544027 TGATTTACCC
Statistics
Matches: 113, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
94 1 0.01
95 71 0.63
96 40 0.35
97 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGTACTAGTGTAAGACCATG
TTTCGGACATGGCATCAGCCACGACATGAGA
Found at i:34548970 original size:27 final size:26
Alignment explanation
Indices: 34548932--34549044 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
34548922 GAGGAAGTGT
34548932 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-AATATCTGA
34548959 TCTGGTGGCTCTGCCACAAATATCT-A
1 TCTGGTGGCTCTGCCAC-AATATCTGA
*
34548985 TTTCTGGTGGCTTTGCCACAATATCTGTA
1 --TCTGGTGGCTCTGCCACAATATCTG-A
* * *
34549014 TCTGGTGACTCTGTCACAATATCTGT
1 TCTGGTGGCTCTGCCACAATATCTGA
34549040 TCTGG
1 TCTGG
34549045 CAGTCGTGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
26 6 0.08
27 54 0.70
28 16 0.21
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACAATATCTGA
Found at i:34549017 original size:55 final size:54
Alignment explanation
Indices: 34548931--34549037 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 54
34548921 GGAGGAAGTG
*
34548931 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCAC-AATATCTAT
* *
34548986 TTCTGGTGGCTTTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTGCCACAATATCT
34549038 GTTCTGGCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
54 15 0.31
55 33 0.69
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAATATCTAT
Found at i:34552772 original size:26 final size:27
Alignment explanation
Indices: 34552738--34552811 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 27
34552728 CTAAAATAGT
* *
34552738 TAAATTTACTAAAATACCCCTAAGT-C
1 TAAAATTACCAAAATACCCCTAAGTGC
** *
34552764 TAAAATTACCATTATACCCCTAGGTGC
1 TAAAATTACCAAAATACCCCTAAGTGC
**
34552791 -AAAATTACCATTATACCCCTA
1 TAAAATTACCAAAATACCCCTA
34552812 GGGTTAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 41 0.98
27 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTAAGTGC
Found at i:34552812 original size:26 final size:26
Alignment explanation
Indices: 34552751--34552813 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
34552741 ATTTACTAAA
*
34552751 ATACCCCTAAGTCTAAAATTACCATT
1 ATACCCCTAGGTCTAAAATTACCATT
34552777 ATACCCCTAGGTGC-AAAATTACCATT
1 ATACCCCTAGGT-CTAAAATTACCATT
34552803 ATACCCCTAGG
1 ATACCCCTAGG
34552814 GTTAATTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 34 0.97
27 1 0.03
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGGTCTAAAATTACCATT
Found at i:34553003 original size:27 final size:28
Alignment explanation
Indices: 34552916--34553025 Score: 179
Period size: 28 Copynumber: 4.0 Consensus size: 28
34552906 GGAGGAAGCG
34552916 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
34552944 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
34552972 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
34552999 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
34553026 CCTGGCAGTC
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 33 0.42
28 46 0.58
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:34553012 original size:55 final size:55
Alignment explanation
Indices: 34552916--34553025 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 55
34552906 GGAGGAAGCG
* *
34552916 TTCTGGTGGCTCTGCCACAAATATCTGTTTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGTATCTGGTGACTCTGCCAC-AATATCTGT
*
34552972 TTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGTATCTGGTGACTCTGCCACAATATCTGT
34553026 CCTGGCAGTC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
54 9 0.18
55 24 0.47
56 18 0.35
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (55 bp):
TTCTGGTGGCTCTGCCACAAATATCTGTATCTGGTGACTCTGCCACAATATCTGT
Found at i:34556384 original size:42 final size:42
Alignment explanation
Indices: 34556231--34556385 Score: 102
Period size: 42 Copynumber: 3.7 Consensus size: 42
34556221 TGAGTTGTTG
* * * * *
34556231 TGTAAGACCACGTATGGGATGTTGGCGTCAAT-TTGAGATTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GATTACA
* ** * ** * *
34556274 TGTAAGACCATGTCCAGGACATAAGCATTGA-ATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATA-TTGATTACA
* *
34556316 TGTAAGACC-CTGTCTGGAATAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTGATTACA
34556358 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
34556386 TGTACTTGCT
Statistics
Matches: 80, Mismatches: 25, Indels: 15
0.67 0.21 0.12
Matches are distributed among these distances:
41 1 0.01
42 55 0.69
43 22 0.28
44 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTACA
Found at i:34560133 original size:27 final size:27
Alignment explanation
Indices: 34560103--34560280 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
34560093 ATATTGAGCC
* *
34560103 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
34560130 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
34560157 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
34560185 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
34560212 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
34560239 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
34560266 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34560281 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34560215 original size:55 final size:54
Alignment explanation
Indices: 34560103--34560280 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
34560093 ATATTGAGCC
* * * * *
34560103 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
34560157 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
34560212 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
34560266 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34560281 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:34578382 original size:40 final size:40
Alignment explanation
Indices: 34578284--34578546 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
34578274 TCCTCGTTCA
* * * * *
34578284 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34578323 AATGCCTTCGGGACATAACCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34578363 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34578403 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34578443 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
34578483 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34578523 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34578547 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34583780 original size:31 final size:31
Alignment explanation
Indices: 34583742--34583802 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
34583732 ATAATGAATG
34583742 AATTAATTATTAAATGTATTTAAATTGTAAA
1 AATTAATTATTAAATGTATTTAAATTGTAAA
*
34583773 AATTAATTATTAAGTGTATTTAAATTGTAA
1 AATTAATTATTAAATGTATTTAAATTGTAA
34583803 TTAATTGACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (31 bp):
AATTAATTATTAAATGTATTTAAATTGTAAA
Found at i:34586769 original size:21 final size:21
Alignment explanation
Indices: 34586744--34586783 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34586734 TACAATTCAT
34586744 TATTTCACA-ATTTTCACAATG
1 TATTTCACACATTTT-ACAATG
*
34586765 TATTTTACACATTTTACAA
1 TATTTCACACATTTTACAA
34586784 ATAAATCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (21 bp):
TATTTCACACATTTTACAATG
Found at i:34596121 original size:35 final size:35
Alignment explanation
Indices: 34596081--34596151 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
34596071 AGGGCAATAG
* *
34596081 TGTAAATTTGCCTTAATGTGTATTTTGGACTAAAT
1 TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
*
34596116 TGTAAATTTTCCCTAATGTGTATTTTGGAATAAAT
1 TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
34596151 T
1 T
34596152 AAATAGAGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.46
Consensus pattern (35 bp):
TGTAAATTTGCCCTAATGTGTATTTTGGAATAAAT
Found at i:34613721 original size:40 final size:40
Alignment explanation
Indices: 34613677--34613893 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
34613667 CGGATGATAA
*
34613677 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
34613717 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
34613757 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
34613797 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
34613837 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
* *
34613876 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34613894 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 133 0.82
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:34615714 original size:53 final size:53
Alignment explanation
Indices: 34615651--34615755 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
34615641 TCATATCGCT
34615651 TGAAGTTAAATTTGCATAAAACTCACGAACAAGTTCCTCATCCACACTTGGTA
1 TGAAGTTAAATTTGCATAAAACTCACGAACAAGTTCCTCATCCACACTTGGTA
*
34615704 TGAAGTTAAATTTGCATAAAACTCACGAACTAGTTCCTCATCCACACTTGGT
1 TGAAGTTAAATTTGCATAAAACTCACGAACAAGTTCCTCATCCACACTTGGT
34615756 CTCTTTTCAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (53 bp):
TGAAGTTAAATTTGCATAAAACTCACGAACAAGTTCCTCATCCACACTTGGTA
Found at i:34627243 original size:47 final size:48
Alignment explanation
Indices: 34627177--34627491 Score: 183
Period size: 47 Copynumber: 6.7 Consensus size: 48
34627167 TTTGTATGCT
*
34627177 AGTGTAAGA-CATGTTTGGGACAT-GCATTGGCCACATTATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCAC-TTATGATGAGCC
* * * * *
34627223 AGTGTAAGACCATGTCTGGGACATGGCA-TCGACA-TTAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACTTATGA--TGAGCC
* * * * * * * *
34627271 AGTGCAAGA-CATGTTTGGGACAT-GTATCGGCTAC-GA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACTTATGATGAGCC
* * * * * *
34627315 AGTGTAAGACCATGT-TGGGACATGGCATCGG-CACGTATAAAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACTTAT-GATGAGCC
* ** * * *
34627362 AGTGTAAGACCATGTCTAGGACATGGCAACGGCACGAATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-C-ACT-TATGATGAGCC
34627412 AGTGTAAGACCATGTCTGGGACATGGCATT-G--ACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACTT-AT-GATGAGCC
* * *
34627459 AGTGTAAGACTATGTTTGGGAGATGGCATTGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC
34627492 ATTATACCCT
Statistics
Matches: 206, Mismatches: 41, Indels: 41
0.72 0.14 0.14
Matches are distributed among these distances:
44 21 0.10
45 20 0.10
46 15 0.07
47 85 0.41
48 30 0.15
49 1 0.00
50 30 0.15
51 2 0.01
52 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACTTATGATGAGCC
Found at i:34627376 original size:92 final size:95
Alignment explanation
Indices: 34627217--34627440 Score: 223
Period size: 92 Copynumber: 2.4 Consensus size: 95
34627207 CCACATTATG
34627217 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACGAGAGCTAGTGCAAGACA
1 AGAG-CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACGAGAGCTAGTGCAAGACA
* * * *
34627282 TGTTTGGGACAT-GTATCGGCTACG-AGATGT
65 TGTCTAGGACATGGCAACGGC-ACGAAGATGT
* * * *
34627312 -G-TCAGTGTAAGACCATGT-TGGGACATGGCATCGGCACGTATAA-A-G-GTG-TCAGTGTAAG
1 AGAGCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAT-TAAGACGAGAGCT-AGTGCAAG
*
34627370 ACCATGTCTAGGACATGGCAACGGCACGAATATGT
62 A-CATGTCTAGGACATGGCAACGGCACGAAGATGT
34627405 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 -AGAGC-AGTGTAAGACCATGTCTGGGACATGGCAT
34627441 TGACTTGATG
Statistics
Matches: 107, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
90 1 0.01
91 24 0.22
92 33 0.31
93 15 0.14
94 4 0.04
95 1 0.01
96 1 0.01
97 15 0.14
98 13 0.12
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (95 bp):
AGAGCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAAGACGAGAGCTAGTGCAAGACAT
GTCTAGGACATGGCAACGGCACGAAGATGT
Found at i:34627428 original size:50 final size:48
Alignment explanation
Indices: 34627312--34627439 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 48
34627302 TACGAGATGT
* * *
34627312 GTCAGTGTAAGACCATGT-TGGGACATGGCATCGGCACGTATAAAGGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCAACGGCACGAATAAAGGA
* *
34627359 GTCAGTGTAAGACCATGTCTAGGACATGGCAACGGCACGAAT-ATGTGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCAACGGCACGAATAAAG-GA
*
34627407 GAGCTAGTGTAAGACCATGTCTGGGACATGGCA
1 G-TC-AGTGTAAGACCATGTCTGGGACATGGCA
34627440 TTGACTTGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
47 20 0.29
48 22 0.31
49 1 0.01
50 27 0.39
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (48 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCAACGGCACGAATAAAGGA
Found at i:34627485 original size:97 final size:94
Alignment explanation
Indices: 34627177--34627486 Score: 253
Period size: 97 Copynumber: 3.3 Consensus size: 94
34627167 TTTGTATGCT
** * * *
34627177 AGTGTAAGACATGTTTGGGACAT-GCATTGGCCAC-A-TTATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTTTGGGACATGGCAACGGCTACGAGATGTGAGAG-CAGTGTAAGACCATGTC
* * *
34627239 TGGGACATGGCATCGACATTAAGACGAGAGCT
65 TGGGACATGGCATCGAC-TTGATA-GAGAGCC
* * * *
34627271 AGTGCAAGACATGTTTGGGACAT-GTATCGGCTACGAGATGT--G-TCAGTGTAAGACCATGT-T
1 AGTGTAAGACATGTTTGGGACATGGCAACGGCTACGAGATGTGAGAGCAGTGTAAGACCATGTCT
* * * *
34627331 GGGACATGGCATCGGCACGT-ATAAAGGTGTC
66 GGGACATGGCATC-G-ACTTGATAGA-GAGCC
* * *
34627362 AGTGTAAGACCATGTCTAGGACATGGCAACGGC-ACGAATATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGA-CATGTTTGGGACATGGCAACGGCTACG-AGATGTGAGAGC-AGTGTAAGACCATG
* *
34627426 TCTGGGACATGGCATTGACTTGATGGATGAGCC
63 TCTGGGACATGGCATCGACTTGATAGA-GAGCC
*
34627459 AGTGTAAGACTATGTTTGGGAGATGGCA
1 AGTGTAAGAC-ATGTTTGGGACATGGCA
34627487 TTGGCATTAT
Statistics
Matches: 171, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
90 1 0.01
91 26 0.15
92 33 0.19
93 13 0.08
94 31 0.18
95 2 0.01
96 7 0.04
97 45 0.26
98 13 0.08
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGGCAACGGCTACGAGATGTGAGAGCAGTGTAAGACCATGTCT
GGGACATGGCATCGACTTGATAGAGAGCC
Found at i:34628886 original size:46 final size:46
Alignment explanation
Indices: 34628836--34629011 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
34628826 TGATTGAGCA
*
34628836 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34628882 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34628927 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34628974 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34629012 GCGGGTTACC
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34628992 original size:93 final size:93
Alignment explanation
Indices: 34628833--34629004 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
34628823 GGATGATTGA
**
34628833 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGT
34628898 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
34628926 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CACCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACC-GAACTCGTTGAG
34628990 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
34629005 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34639784 original size:49 final size:50
Alignment explanation
Indices: 34639708--34639940 Score: 247
Period size: 49 Copynumber: 4.7 Consensus size: 50
34639698 ATCTATTATG
* *
34639708 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * * * *
34639758 -GGTCGCATGTGTAGTATTAAGAGCAGGCTACTATGCGTACTC-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCGGATAA-TT
* * ** * * **
34639808 CGATCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
* * * * *
34639858 AGGCCACGTCTGTAGTACTAAGTGCAGGCTCCTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
34639908 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
34639941 TGCGTACTAG
Statistics
Matches: 146, Mismatches: 33, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
49 66 0.45
50 47 0.32
51 33 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
Found at i:34651397 original size:19 final size:19
Alignment explanation
Indices: 34651373--34651411 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
34651363 TTACCAACCC
34651373 AAAATA-CGATATTTGTACA
1 AAAATATCG-TATTTGTACA
*
34651392 AAAATATTGTATTTGTACA
1 AAAATATCGTATTTGTACA
34651411 A
1 A
34651412 TTATATTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (19 bp):
AAAATATCGTATTTGTACA
Found at i:34652228 original size:45 final size:45
Alignment explanation
Indices: 34652118--34652248 Score: 155
Period size: 45 Copynumber: 3.0 Consensus size: 45
34652108 CCGAATTCAT
* * *
34652118 TCACCGGCATT-TTGCCTACTAGGCTTG-AAGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGT-ATC
* *
34652160 TCACTGACATTATAGCCTACTAGGCTCGAAAGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGTATC
*
34652205 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTACTAGGCTCGAAA-GCCCGAATAGTAT
34652249 TGTGCGATAT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
42 9 0.12
43 14 0.18
44 10 0.13
45 42 0.55
46 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTACTAGGCTCGAAAGCCCGAATAGTATC
Found at i:34653107 original size:47 final size:46
Alignment explanation
Indices: 34653051--34653145 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 46
34653041 AAAATTTTCT
34653051 TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATGAAGAGC-AATTTAACAAGC
*
34653098 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAATTTAACAAGC
34653144 TT
1 TT
34653146 TAAATTCAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 14 0.30
47 33 0.70
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATATGAAGAGCAATTTAACAAGC
Found at i:34660757 original size:14 final size:14
Alignment explanation
Indices: 34660746--34660775 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
34660736 GTAAAATGTT
34660746 TTTC-GGAAAATGA
1 TTTCTGGAAAATGA
34660759 TTTCTGGAAAATGA
1 TTTCTGGAAAATGA
34660773 TTT
1 TTT
34660776 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATGA
Found at i:34676253 original size:48 final size:47
Alignment explanation
Indices: 34676159--34676518 Score: 273
Period size: 48 Copynumber: 7.7 Consensus size: 47
34676149 TTATTTGTAT
* * *
34676159 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCA-GATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-TATGA-GATGAGA
*
34676205 GCTAGTCTAAGACCATGTCTGGGACATGGCATCAGTATTGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTA-TGAGATGAGA
* * * *
34676253 GTTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-AGTATGAGATGAGA
* * * * *
34676298 TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTA-TGAGATGAGA
* *
34676345 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-TATGAGATGAGA
* * * * *
34676390 TC-AGTATAAGACCATGTTTGGGACATGGCATCGACACGTAT-AG--GGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT---CA-GTATGAGATGAGA
* * * *
34676437 G-TCAGTGTAAGATCATGTCTGGGACATGGCATCAGCACGAATATGCGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGTATG-AGAT--GAGA
34676487 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
34676519 TGGCATTATA
Statistics
Matches: 249, Mismatches: 38, Indels: 50
0.74 0.11 0.15
Matches are distributed among these distances:
44 19 0.08
45 30 0.12
46 55 0.22
47 46 0.18
48 60 0.24
49 6 0.02
50 32 0.13
51 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGTATGAGATGAGA
Found at i:34676337 original size:92 final size:92
Alignment explanation
Indices: 34676159--34676422 Score: 352
Period size: 92 Copynumber: 2.8 Consensus size: 92
34676149 TTATTTGTAT
* * * * * *
34676159 GCTAGTGTAAGACATGTCTAGGACATGCATC-AGCCA-GATTATGAGAGCTAGTCTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTACGA-GATGTG-TC-AGTATAAGACCATG
* * * *
34676222 TCTGGGACATGGCATCAGTATTGAGATGAGA
62 TTTGGGACATGGCATCGGCATTGAGACGAGA
* *
34676253 GTTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTGTAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
34676318 GGACATGGCATCGGCATTGAGACGAGA
66 GGACATGGCATCGGCATTGAGACGAGA
* *
34676345 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTATAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
34676410 GGACATGGCATCG
66 GGACATGGCATCG
34676423 ACACGTATAG
Statistics
Matches: 153, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
92 114 0.75
93 1 0.01
94 35 0.23
95 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
GGACATGGCATCGGCATTGAGACGAGA
Found at i:34676443 original size:140 final size:139
Alignment explanation
Indices: 34676162--34676514 Score: 384
Period size: 140 Copynumber: 2.5 Consensus size: 139
34676152 TTTGTATGCT
* ** * *
34676162 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-CAGATTA-TGAGAGCTAGTCTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-GAAGAGCGAGAGCTAGTGTAAGACCATGT
* *
34676223 CTGGGACATGGCATCAGTATTGAGATGAGAGTTAGTGTAAGACATGTCTGGGACATGCATCGACT
65 CTGGGACAT-GCATCAGTATTGAGAT-AGAGTCAGTATAAGACATGTCTGGGACATGCATCGACT
*
34676288 ACGAGATGTGTC
128 ACGAGAGGTGTC
* * *
34676300 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-AGA-CGAGAGCTAGTGTAAGA-CATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGAAGAGCGAGAGCTAGTGTAAGACCATGT
* * *
34676362 CTGGGACATGCATCGGCTA-TGAGAT-GTGTCAGTATAAGACCATGTTTGGGACATGGCATCGAC
65 CTGGGACATGCATCAG-TATTGAGATAGAGTCAGTATAAGA-CATGTCTGGGACAT-GCATCGAC
*
34676425 -ACGTATAGGGGTGTC
127 TACG---AGAGGTGTC
* *
34676440 AGTGTAAGATCATGTCTGGGACATGGCATCAGCACGAATATGCGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGA-GCGAGAGCTAGTGTAAGACCATGT
34676505 CTGGGACATG
65 CTGGGACATG
34676515 GCATTGGCAT
Statistics
Matches: 181, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
136 11 0.06
137 16 0.09
138 29 0.16
139 29 0.16
140 63 0.35
141 1 0.01
142 17 0.09
143 15 0.08
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (139 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAAGAGCGAGAGCTAGTGTAAGACCATGTC
TGGGACATGCATCAGTATTGAGATAGAGTCAGTATAAGACATGTCTGGGACATGCATCGACTACG
AGAGGTGTC
Found at i:34676444 original size:92 final size:92
Alignment explanation
Indices: 34676159--34676469 Score: 326
Period size: 92 Copynumber: 3.3 Consensus size: 92
34676149 TTATTTGTAT
* * * * * *
34676159 GCTAGTGTAAGACATGTCTAGGACATGCATC-AGCCA-GATTATGAGAGCTAGTCTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CTACGA-GATGTG-TC-AGTATAAGACCATG
* * * *
34676222 TCTGGGACATGGCATC-AGTATTGAGATGAGA
62 TTTGGGACATGGCATCGA-CAGTGAGACGAGA
* *
34676253 GTTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTGTAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
* *
34676318 GGACATGGCATCGGCATTGAGACGAGA
66 GGACATGGCATCGACAGTGAGACGAGA
* *
34676345 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTATAAGACCATGTTTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
* * * *
34676410 GGACATGGCATCGACACGT-ATAGGGGT
66 GGACATGGCATCGACA-GTGAGACGAGA
34676437 G-TCAGTGTAAGATCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
34676470 AGCACGAATA
Statistics
Matches: 189, Mismatches: 21, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
91 1 0.01
92 129 0.68
93 16 0.08
94 40 0.21
95 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAGTATAAGACCATGTTTG
GGACATGGCATCGACAGTGAGACGAGA
Found at i:34677942 original size:27 final size:27
Alignment explanation
Indices: 34677880--34677943 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
34677870 CAGTCACTTG
*
34677880 CCCACAAGGGCAAAACAGTCATTTAAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
* ** ** *
34677907 ACCTTAAGGGCAAAATTGTAATTTTAC
1 CCCACAAGGGCAAAACAGTAATTTAAC
34677934 CCCACAAGGG
1 CCCACAAGGG
34677944 TATCTCGATA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (27 bp):
CCCACAAGGGCAAAACAGTAATTTAAC
Found at i:34677955 original size:27 final size:27
Alignment explanation
Indices: 34677924--34678037 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
34677914 GGGCAAAATT
* * *
34677924 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
34677951 ATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
34677978 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
34678005 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
34678032 GTAATT
1 GTAATT
34678038 TTACAAACTA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:34677995 original size:54 final size:53
Alignment explanation
Indices: 34677927--34678041 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 53
34677917 CAAAATTGTA
34677927 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTGGT
1 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTGGT
* * * *
34677980 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGT
1 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTGGT
34678034 AATTTTAC
1 -ATTTTAC
34678042 AAACTAGGGG
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
53 4 0.07
54 48 0.86
55 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (53 bp):
ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTTGGT
Found at i:34678049 original size:27 final size:27
Alignment explanation
Indices: 34678019--34678281 Score: 307
Period size: 27 Copynumber: 9.8 Consensus size: 27
34678009 TTCTACCCTA
34678019 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
**
34678046 TAGGGGTATTTTGGTAATTTTGTAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
* **
34678073 CAGGGGTATTTTGGTAATTTTACAAGT
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * * *
34678100 TAAGGGTATTTTAGTAATTTCACAAAT
1 TAGGGGTATTTTGGTAATTTTACAAAC
**
34678127 TAGGGGTATTTTGGTAATTTTGTAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
* * *
34678154 CAAGGGTATTTTGGTAATTTTAC-AAG
1 TAGGGGTATTTTGGTAATTTTACAAAC
* ** *
34678180 TCGAGGGTATTTCAGTAATTTCACAAA-
1 TAG-GGGTATTTTGGTAATTTTACAAAC
*
34678207 TCAGGGGTATTTTGGTAATTTCACAAAC
1 T-AGGGGTATTTTGGTAATTTTACAAAC
*
34678235 TAGGGGTATTTTAGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC
34678262 TA-GGGTATTTTGGTAATTTT
1 TAGGGGTATTTTGGTAATTTT
34678282 GCTAATCGAG
Statistics
Matches: 197, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
26 19 0.10
27 174 0.88
28 4 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTTGGTAATTTTACAAAC
Found at i:34678051 original size:81 final size:80
Alignment explanation
Indices: 34677966--34678280 Score: 280
Period size: 81 Copynumber: 3.9 Consensus size: 80
34677956 TCTACCCTAC
** * *
34677966 AGGGGTATTTTGGTA-TTTCTACCCTACAAGGGTATTTCGGTAATTCTAC-CCTATAGGGGTATT
1 AGGGGTATTTTGGTATTTTCTAAAC--CAAGGGTATTTCGGTAATTCTACAACT-TAAGGGTATT
* *
34678029 TTGGTAATTTTACAAACT
63 TTAGTAATTTCACAAACT
* * * * *
34678047 AGGGGTATTTTGGTAATTTTGTAAACCAGGGGTATTTTGGTAATTTTACAAGTTAAGGGTATTTT
1 AGGGGTATTTTGGT-ATTTTCTAAACCAAGGGTATTTCGGTAATTCTACAACTTAAGGGTATTTT
*
34678112 AGTAATTTCACAAATT
65 AGTAATTTCACAAACT
* * * * ** *
34678128 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTC
1 AGGGGTATTTTGGT-ATTTTCTAAACCAAGGGTATTTCGGTAATTCTACAACTTAAGGGTATTTT
34678193 AGTAATTTCACAAA-T
65 AGTAATTTCACAAACT
* * * * ** *
34678208 CAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTAGTAATTTTACAAAC-T-AGGGTATT
1 -AGGGGTATTTTGGTATTTTC-TAAACCAAGGGTATTTCGGTAATTCTAC-AACTTAAGGGTATT
*
34678271 TTGGTAATTT
63 TTAGTAATTT
34678281 TGCTAATCGA
Statistics
Matches: 202, Mismatches: 26, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
80 21 0.10
81 171 0.85
82 4 0.02
83 6 0.03
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.40
Consensus pattern (80 bp):
AGGGGTATTTTGGTATTTTCTAAACCAAGGGTATTTCGGTAATTCTACAACTTAAGGGTATTTTA
GTAATTTCACAAACT
Found at i:34678053 original size:54 final size:54
Alignment explanation
Indices: 34677952--34678280 Score: 264
Period size: 54 Copynumber: 6.1 Consensus size: 54
34677942 GGTATCTCGA
* ** *
34677952 TAATTCTACCCTAC-AGGGGTATTTTGGT-ATTTCTACCCTAC-AAGGGTATTTCGG
1 TAATT-TACCCAACTAGGGGTATTTTGGTAATTT-TA-CAAACTAAGGGTATTTTGG
* *
34678006 TAATTCTACCCTA-TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 TAATT-TACCCAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
**** * ** *
34678060 TAATTTTGTAAACCAGGGGTATTTTGGTAATTTTACAAGTTAAGGGTATTTTAG
1 TAATTTACCCAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
* * ** *
34678114 TAATTT-CACAAATTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTAC-CCAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
* * ** * *
34678168 TAATTTTA--CAAGTCGAGGGTATTTCAGTAATTTCACAAA-TCAGGGGTATTTTGG
1 TAA-TTTACCCAACTAG-GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTGG
* *
34678222 TAATTT-CACAAACTAGGGGTATTTTAGTAATTTTACAAACT-AGGGTATTTTGG
1 TAATTTAC-CCAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
34678275 TAATTT
1 TAATTT
34678281 TGCTAATCGA
Statistics
Matches: 222, Mismatches: 40, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
53 29 0.13
54 181 0.82
55 12 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (54 bp):
TAATTTACCCAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
Found at i:34682452 original size:40 final size:40
Alignment explanation
Indices: 34682394--34682570 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
34682384 CGGATGATAA
* *
34682394 CCGGGCCAAGGCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
34682434 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
34682474 CCGGGCTAAGACCTGAAGGCATTTGTACGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
34682514 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
34682554 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
34682571 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 112 0.90
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:34682839 original size:22 final size:22
Alignment explanation
Indices: 34682797--34682840 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
34682787 AAAATGTGCA
* *
34682797 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
34682819 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
34682841 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:34703374 original size:23 final size:24
Alignment explanation
Indices: 34703348--34703408 Score: 67
Period size: 22 Copynumber: 2.7 Consensus size: 24
34703338 AATCATTGGG
**
34703348 GCTTACCATTTCAGCTTGTAT-GA
1 GCTTACCATTTCAGCTTCAATAGA
34703371 GCTTA-C-TGTTCAGC-TCAATAGA
1 GCTTACCAT-TTCAGCTTCAATAGA
34703393 GCTTACCATTTCAGCT
1 GCTTACCATTTCAGCT
34703409 CGTTAGAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 4 0.13
22 14 0.45
23 12 0.39
24 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (24 bp):
GCTTACCATTTCAGCTTCAATAGA
Found at i:34703394 original size:22 final size:22
Alignment explanation
Indices: 34703369--34703426 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
34703359 CAGCTTGTAT
34703369 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
**
34703391 GAGCTTACCAT-TTCAGCTCGTTA
1 GAGCTTA-C-TGTTCAGCTCAATA
34703414 GAG-TTACTGTTCA
1 GAGCTTACTGTTCA
34703427 TCAACTTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 1 0.03
21 5 0.16
22 10 0.32
23 14 0.45
24 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:34703415 original size:23 final size:22
Alignment explanation
Indices: 34703348--34703420 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 22
34703338 AATCATTGGG
*
34703348 GCTTACCATTTCAGCTTGTATGA
1 GCTTACCATTTCAGCTCGTA-GA
*
34703371 GCTTA-C-TGTTCAGCTCAATAGA
1 GCTTACCAT-TTCAGCTC-GTAGA
34703393 GCTTACCATTTCAGCTCGTTAGA
1 GCTTACCATTTCAGCTCG-TAGA
34703416 G-TTAC
1 GCTTAC
34703421 TGTTCATCAA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
21 1 0.02
22 19 0.45
23 21 0.50
24 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (22 bp):
GCTTACCATTTCAGCTCGTAGA
Found at i:34712496 original size:42 final size:43
Alignment explanation
Indices: 34712450--34712530 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
34712440 TGTGATTACA
* *
34712450 TGTAA-AACATGTCTGGGACATTAGCATCGTTATATGATTTCG
1 TGTAAGAACATGTCTGGGACAGTAGCATCGATATATGATTTCG
* * * *
34712492 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGAT
1 TGTAAGAACATGTCTGGGACAGTAGCATCGATATATGAT
34712531 AACATGTAGA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 5 0.16
43 27 0.84
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGAACATGTCTGGGACAGTAGCATCGATATATGATTTCG
Found at i:34713721 original size:42 final size:42
Alignment explanation
Indices: 34713674--34713760 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
34713664 TTTCATATGA
* *
34713674 CCTGAGACACGGGCGTGTCAGGTGGCCGTGTGAGGCATACGG
1 CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
* *
34713716 CCTGAGACACGAGTGTGTTAGGTGGCCGTGTGAGGCACACGG
1 CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
34713758 CCT
1 CCT
34713761 ATTCACACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.17, C:0.24, G:0.40, T:0.18
Consensus pattern (42 bp):
CCTGAGACACGAGCGTGTCAGGTGGCCGTGTGAGGCACACGG
Found at i:34725885 original size:40 final size:40
Alignment explanation
Indices: 34725649--34725871 Score: 292
Period size: 40 Copynumber: 5.6 Consensus size: 40
34725639 GAATGATGCT
* * * *
34725649 GGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCC
* *
34725689 GGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
34725729 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
34725769 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
34725809 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
34725849 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
34725872 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:34729528 original size:48 final size:46
Alignment explanation
Indices: 34729462--34729584 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 46
34729452 AAACTGACAC
* *
34729462 CATGTCCCAAACAGGTCTTACACTAGCT-TGTAT-ATCCCGAGGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCT-TATAAT---GAGCCCGATG
* * *
34729510 CATGTCCTAAACATGTCTTACACTGGCTCTTATAATGTGCCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTTATAATGAGCCCGATG
* *
34729556 CATGTCCCAGACATGTCTTACACTGGCTC
1 CATGTCCCAAACATGTCTTACACTAGCTC
34729585 ACATACCTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
46 35 0.53
48 28 0.42
49 3 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTTATAATGAGCCCGATG
Found at i:34740828 original size:55 final size:55
Alignment explanation
Indices: 34740661--34741064 Score: 319
Period size: 55 Copynumber: 7.6 Consensus size: 55
34740651 AACTTACCAT
* * *
34740661 TGCCATGT-CTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * **
34740714 TGCCATG-CCTTGGCATGGTCTTAAATGCCA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * *
34740769 TGCCATGTCTTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATTAA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * * * **
34740824 TGCCATG-CGTTGGCATGGTTTTACATGGTATCCTTATC-T-T---AC-CA--AA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
** * * *
34740870 TGCCATGTTCC-AAACATGCTCTTACAT-AGTATCCTTGTCTTAT-GAACTCACCAA
1 TGCCATG-TCCTTGACATGGTCTTACATGA-TATCCTTGCCTTATAGAACTCATCAA
* **
34740924 TGCCATG-CCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
34740979 TGTCATGT-CTTGACATGGTCTTACATGATTTCCTTACCTTGTAGAACTTATCAA
1 TGCCATGTCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
34741033 TG-C-TGTGCCTTGGCATGGTCTTACATGATATC
1 TGCCATGT-CCTTGACATGGTCTTACATGATATC
34741065 ATTATCTTAG
Statistics
Matches: 278, Mismatches: 48, Indels: 49
0.74 0.13 0.13
Matches are distributed among these distances:
46 9 0.03
47 20 0.07
48 3 0.01
49 3 0.01
51 2 0.01
52 12 0.04
53 56 0.20
54 68 0.24
55 73 0.26
56 30 0.11
57 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (55 bp):
TGCCATGTCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:34741050 original size:54 final size:58
Alignment explanation
Indices: 34740929--34741061 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 58
34740919 ACCAATGCCA
* *
34740929 TGCCTTGGCATGGTCTTACATG-GGACCTTTGCCTTATAGTAACTCATCAATGTCATG
1 TGCCTTGGCATGGTCTTACATGATGACCTTTACCTTATAGTAACTCATCAATGTCATG
* ** * *
34740986 T--CTTGACATGGTCTTACATGATTTCC-TTACCTTGTAG-AACTTATCAATG-C-TG
1 TGCCTTGGCATGGTCTTACATGATGACCTTTACCTTATAGTAACTCATCAATGTCATG
34741038 TGCCTTGGCATGGTCTTACATGAT
1 TGCCTTGGCATGGTCTTACATGAT
34741062 ATCATTATCT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
52 3 0.05
53 1 0.02
54 31 0.48
55 27 0.42
56 2 0.03
57 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.38
Consensus pattern (58 bp):
TGCCTTGGCATGGTCTTACATGATGACCTTTACCTTATAGTAACTCATCAATGTCATG
Found at i:34741059 original size:209 final size:210
Alignment explanation
Indices: 34740673--34741073 Score: 642
Period size: 210 Copynumber: 1.9 Consensus size: 210
34740663 CCATGTCTTG
* * *
34740673 ACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAA
1 ACATGCTCTTACATAGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAA
34740738 ATGCCACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTTGACATGGTCTTACATGATTTCC
66 ATGCCACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTTGACATGGTCTTACATGATTTCC
* * * * * *
34740803 TTGCCTTATAGAACTTATTAATGCCATGCGTTGGCATGGTTTTACATGGTATCCTTATCTTACCA
131 TTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCATTATCTTACCA
34740868 AATGCCATGTTCCAA
196 AATGCCATGTTCCAA
* *
34740883 ACATGCTCTTACATAGTATCCTTGTCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAC
1 ACATGCTCTTACATAGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAA
** *
34740948 ATGGGACCTTTGCCTTATAGTAACTCATCAATGTCATGTC-TTGACATGGTCTTACATGATTTCC
66 ATGCCACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTTGACATGGTCTTACATGATTTCC
* **
34741012 TTACCTTGTAGAACTTATCAATGCTGTGCCTTGGCATGGTCTTACATGATATCATTATCTTA
131 TTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCATTATCTTA
34741074 GTGCTAATGC
Statistics
Matches: 174, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
209 77 0.44
210 97 0.56
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (210 bp):
ACATGCTCTTACATAGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTAA
ATGCCACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTTGACATGGTCTTACATGATTTCC
TTACCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCATTATCTTACCA
AATGCCATGTTCCAA
Found at i:34741279 original size:44 final size:44
Alignment explanation
Indices: 34741210--34741296 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
34741200 GTATCCTTAA
* * *
34741210 CCGTCAATTCCTCTTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* * *
34741254 CCGTCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
34741297 GAGATATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:34745277 original size:49 final size:49
Alignment explanation
Indices: 34745099--34745330 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
34745089 TCTATTGTGA
* * * * *
34745099 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * * * **
34745150 GATCACGTGTGTAGTACTAAGTGCAGGCCACTACGTGTAGCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
34745199 AGGCCACATGTGCAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
34745249 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
34745298 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
34745331 TGCATACCAG
Statistics
Matches: 152, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 76 0.50
50 40 0.26
51 36 0.24
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:34745282 original size:99 final size:100
Alignment explanation
Indices: 34745104--34745330 Score: 296
Period size: 99 Copynumber: 2.3 Consensus size: 100
34745094 TGTGAGGTCG
*
34745104 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
* **
34745169 AGTGCAGGCCACTACGTGTAGCAGATGGTTAGGCCA
66 AGTGCAGGCCACTACGTGTACCAGATAATT-GGCCA
* * * * * *
34745205 CATGTGCAGTACTAAGTGCAGGCTATTACGTGTACCGGATAA-T-TGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
* * * *
34745268 AGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
66 AGTGCAGGCCACTACGTGTACCAGATAATTGGCCA
*
34745303 CATGTGTAGTACTATGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
34745331 TGCATACCAG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
98 28 0.26
99 44 0.40
100 1 0.01
101 36 0.33
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
AGTGCAGGCCACTACGTGTACCAGATAATTGGCCA
Found at i:34747769 original size:40 final size:40
Alignment explanation
Indices: 34747691--34747873 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
34747681 AATGATGTCT
* * *
34747691 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCC
*
34747731 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
34747771 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
34747811 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
34747851 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
34747874 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 119 0.93
41 8 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:34751632 original size:51 final size:50
Alignment explanation
Indices: 34751566--34751703 Score: 143
Period size: 50 Copynumber: 2.7 Consensus size: 50
34751556 TGAGGTCGCA
* *
34751566 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAG-AAACTGAGATCACG
* * ** *** *
34751617 TGTGTAGTACTAAGTGCA-AGCTACTACGTGTATTAGATGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGA-CTACTATGCGTACCAGAAACTGAGATCACG
* *
34751667 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA
1 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGA
34751704 TAGCTTCGGC
Statistics
Matches: 69, Mismatches: 16, Indels: 5
0.77 0.18 0.06
Matches are distributed among these distances:
50 40 0.58
51 29 0.42
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGAAACTGAGATCACG
Done.