Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 108 of 320
Found at i:35046183 original size:14 final size:14
Alignment explanation
Indices: 35046164--35046203 Score: 71
Period size: 14 Copynumber: 2.8 Consensus size: 14
35046154 AAAAATAAAA
35046164 ATTTATTTTATTTT
1 ATTTATTTTATTTT
35046178 ATTTATTTTATTTT
1 ATTTATTTTATTTT
35046192 ATTTTATTTTAT
1 A-TTTATTTTAT
35046204 GGTTGGTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 15 0.60
15 10 0.40
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
ATTTATTTTATTTT
Found at i:35049479 original size:21 final size:21
Alignment explanation
Indices: 35049455--35049499 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
35049445 AACATGGTCG
*
35049455 TGTGGCTACTCCACACTCCCA
1 TGTGGCTACTCCACACACCCA
* *
35049476 TGTGTCTACTTCACACACCCA
1 TGTGGCTACTCCACACACCCA
35049497 TGT
1 TGT
35049500 ACGCAGACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.38, G:0.13, T:0.29
Consensus pattern (21 bp):
TGTGGCTACTCCACACACCCA
Found at i:35052956 original size:43 final size:42
Alignment explanation
Indices: 35052843--35052959 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
35052833 GAGATCTACG
* * * *
35052843 TGTAAGACCATGTCTGGGACATAGGCATCGTATATGATTTCA
1 TGTAAGACCACGTCTGGGACATTGGCATTGTATATGATTACA
** * *
35052885 TGTAAGACC-CTGTCTATGACAGTGGCATTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATTG-TATATGATTACA
35052928 TGTAAGACCACGTCTGGGACATTGGCATTGTA
1 TGTAAGACCACGTCTGGGACATTGGCATTGTA
35052960 CGAGCTTTTC
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.41
43 35 0.57
44 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATTGTATATGATTACA
Found at i:35055345 original size:17 final size:16
Alignment explanation
Indices: 35055318--35055349 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
35055308 TGATAGATCT
35055318 CCGATGAGCTTCCAAC
1 CCGATGAGCTTCCAAC
35055334 CCGATCGAGCTTCCAA
1 CCGAT-GAGCTTCCAA
35055350 TAATTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.25, C:0.38, G:0.19, T:0.19
Consensus pattern (16 bp):
CCGATGAGCTTCCAAC
Found at i:35056339 original size:13 final size:13
Alignment explanation
Indices: 35056314--35056347 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
35056304 CAACACACCA
*
35056314 AACA-GAGAGTAT
1 AACATGAGAATAT
35056326 AACATGAGAATAT
1 AACATGAGAATAT
35056339 AACATGAGA
1 AACATGAGA
35056348 GTTCGCAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.53, C:0.09, G:0.21, T:0.18
Consensus pattern (13 bp):
AACATGAGAATAT
Found at i:35058824 original size:37 final size:37
Alignment explanation
Indices: 35058774--35058852 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
35058764 TTATTACGAA
* * *
35058774 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
35058811 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
35058848 GTCTT
1 GTCTT
35058853 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:35059284 original size:47 final size:47
Alignment explanation
Indices: 35058971--35059287 Score: 483
Period size: 47 Copynumber: 6.7 Consensus size: 47
35058961 CCCTTCGGGA
* * * * * *
35058971 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35059018 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35059065 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35059112 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35059159 CTTATCACATATATACACTCTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35059206 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
35059253 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
35059288 AGAATCCTAA
Statistics
Matches: 252, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 251 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35060952 original size:56 final size:50
Alignment explanation
Indices: 35060883--35061027 Score: 185
Period size: 44 Copynumber: 2.9 Consensus size: 50
35060873 TATTAGTTTA
*
35060883 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTC-TG---T-T
35060938 TTCGCCCATGCTTCTTATTTTATTTTTCCATTAACACAAC------CTGTT
1 TT-GCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCTGTT
35060983 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTT
35061028 TGCCCATCAT
Statistics
Matches: 82, Mismatches: 1, Indels: 19
0.80 0.01 0.19
Matches are distributed among these distances:
44 37 0.45
45 3 0.04
46 1 0.01
49 2 0.02
50 1 0.01
55 2 0.02
56 36 0.44
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.46
Consensus pattern (50 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCTGTT
Found at i:35060989 original size:44 final size:44
Alignment explanation
Indices: 35060932--35061034 Score: 188
Period size: 44 Copynumber: 2.3 Consensus size: 44
35060922 ATGTTTCATG
*
35060932 ACATGTTTCGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
1 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
*
35060976 ACCTGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
1 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
35061020 ACATGTTTTGCCCAT
1 ACATGTTTTGCCCAT
35061035 CATCCCTTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.46
Consensus pattern (44 bp):
ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
Found at i:35063189 original size:41 final size:41
Alignment explanation
Indices: 35063144--35063488 Score: 267
Period size: 41 Copynumber: 8.4 Consensus size: 41
35063134 CTTCATGCCG
* *
35063144 GTGTATTATATCAAGCTTTGTGCCTAGCAAGTTTCGTGCTA
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGGTTTCGTGCTA
* * * *
35063185 GTGTATTGTATCAGGCTTTATTCCTAGCAGGCTTT-GTGCCA
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGG-TTTCGTGCTA
* * * * * *
35063226 ATGTATTATATCAGGCTTTGTGCTTAGCAAGCTTCATG-TC
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGGTTTCGTGCTA
* * * *
35063266 GATGTATTATATCAGGCCTTTATGCCTAGTAGGCTTCATGCTA
1 G-TGTATTATATCAGG-CTTTGTGCCTAGCAGGTTTCGTGCTA
* * * * * *
35063309 GTGTATTATATCAAGCTTTATTCTTAGCAGGCTTCGTG-TCG
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGGTTTCGTGCT-A
* ** * * *
35063350 GTGTATTATATTAGGAGTTGTGCCTTGTAGGTTTCGTGCCA
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGGTTTCGTGCTA
*
35063391 GTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTT-GTG-TC
1 GTGTATTATATCAGGCTTTGTGCCTAGCAGG-TTTCGTGCTA
* * *
35063431 GATGTATTATATCAAGATTTGTGCCTAGTAGGCTTT-GTGCT-
1 G-TGTATTATATCAGGCTTTGTGCCTAGCAGG-TTTCGTGCTA
35063472 G-GT-TTATTATCAGGCTT
1 GTGTATTA-TATCAGGCTT
35063489 CATGCAAGTG
Statistics
Matches: 241, Mismatches: 52, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
38 3 0.01
39 10 0.04
40 4 0.02
41 183 0.76
42 39 0.16
43 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (41 bp):
GTGTATTATATCAGGCTTTGTGCCTAGCAGGTTTCGTGCTA
Found at i:35063403 original size:165 final size:164
Alignment explanation
Indices: 35063131--35063465 Score: 413
Period size: 165 Copynumber: 2.0 Consensus size: 164
35063121 TAAGTCCTGC
* * * *
35063131 AGGCTTCATGCCGGTGTATTATATCAAGCTTTGTGCCTAGCAAGTTTCGTGCTAGTGTATTGTAT
1 AGGCTTCATGCCAGTGTATTATATCAAGCTTTATGCCTAGCAAGCTTCGTGCTAGTGTATTATAT
** * *
35063196 CAGGCTTTATTCCTAGCAGGCTTTGTGCCAATGTATTATATCAGGCTTTGTGCTTAGCAAGCTTC
66 CAGGAGTTATGCCTAGCAGGCTTTGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAAGCTTC
* *
35063261 ATGTCGATGTATTATATCAGGCCTTTATGCCTAGT
131 ATGTCGATGTATTATATCAAG-ATTTATGCCTAGT
* * * * *
35063296 AGGCTTCATGCTAGTGTATTATATCAAGCTTTATTCTTAGCAGGCTTCGTG-TCGGTGTATTATA
1 AGGCTTCATGCCAGTGTATTATATCAAGCTTTATGCCTAGCAAGCTTCGTGCT-AGTGTATTATA
* * * * * *
35063360 TTAGGAGTTGTGCCTTGTAGG-TTTCGTGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCT
65 TCAGGAGTTATGCCTAGCAGGCTTT-GTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAAGCT
** *
35063424 TTGTGTCGATGTATTATATCAAGATTTGTGCCTAGT
129 TCATGTCGATGTATTATATCAAGATTTATGCCTAGT
35063460 AGGCTT
1 AGGCTT
35063466 TGTGCTGGTT
Statistics
Matches: 144, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
164 21 0.15
165 123 0.85
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (164 bp):
AGGCTTCATGCCAGTGTATTATATCAAGCTTTATGCCTAGCAAGCTTCGTGCTAGTGTATTATAT
CAGGAGTTATGCCTAGCAGGCTTTGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAAGCTTC
ATGTCGATGTATTATATCAAGATTTATGCCTAGT
Found at i:35063481 original size:82 final size:82
Alignment explanation
Indices: 35063139--35063470 Score: 362
Period size: 82 Copynumber: 4.0 Consensus size: 82
35063129 GCAGGCTTCA
* * * * * *
35063139 TGCCGGTGTATTATATCAAGCTTTGTGCCTAGCAAGTTTCGTG-CTAGTGTATTGTATCAGGCTT
1 TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGTCGA-TGTATTATATCAGGATT
* *
35063203 TATTCCTAGCAGGCTTTG
65 TATGCCTAGTAGGCTTTG
* * * *
35063221 TGCCAATGTATTATATCAGGCTTTGTGCTTAGCAAGCTTCATGTCGATGTATTATATCAGGCCTT
1 TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGTCGATGTATTATATCAGG-ATT
**
35063286 TATGCCTAGTAGGCTTCA
65 TATGCCTAGTAGGCTTTG
* * * * * * * * *
35063304 TGCTAGTGTATTATATCAAGCTTTATTCTTAGCAGGCTTCGTGTCGGTGTATTATATTAGGAGTT
1 TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGTCGATGTATTATATCAGGATTT
* *
35063369 GTGCCTTGTAGG-TTTCG
66 ATGCCTAGTAGGCTTT-G
* * *
35063386 TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTCGATGTATTATATCAAGATTT
1 TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGTCGATGTATTATATCAGGATTT
*
35063451 GTGCCTAGTAGGCTTTG
66 ATGCCTAGTAGGCTTTG
35063468 TGC
1 TGC
35063471 TGGTTTATTA
Statistics
Matches: 208, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
81 2 0.01
82 132 0.63
83 74 0.36
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (82 bp):
TGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAAGCTTCGTGTCGATGTATTATATCAGGATTT
ATGCCTAGTAGGCTTTG
Found at i:35063541 original size:41 final size:41
Alignment explanation
Indices: 35063482--35063748 Score: 259
Period size: 41 Copynumber: 6.5 Consensus size: 41
35063472 GGTTTATTAT
* *
35063482 CAGGCTTCATGCAAGTGTATTATATCAGGCTTTGTGCCTAG
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAG
* * * * *
35063523 CAGGCTTTGTGCTGGTGTATTATATCAAGCTTTGGGCTTAG
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAG
* *
35063564 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTCTGACTAG
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAG
* * * *
35063605 TAGGCTTCGTG-TCAGTGTATTATATTAAGCTTTGTGCCTAA
1 CAGGCTTCGTGCT-AGTGTATTATATCAGGCTTTGTGCCTAG
* * * * * * * *
35063646 AAAGCTTTGTTCTGGTGTGTTATATCAGACTTTGAGCCTAG
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAG
* * * * * *
35063687 TAGGCTTCGTG-TCAGTGTGTTATATCAGGTTTTGAGCTTAA
1 CAGGCTTCGTGCT-AGTGTATTATATCAGGCTTTGTGCCTAG
35063728 CAGGCTTCGTGCTAGTGTATT
1 CAGGCTTCGTGCTAGTGTATT
35063749 GTATTAGGTA
Statistics
Matches: 180, Mismatches: 42, Indels: 8
0.78 0.18 0.03
Matches are distributed among these distances:
40 2 0.01
41 176 0.98
42 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (41 bp):
CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAG
Found at i:35063576 original size:105 final size:107
Alignment explanation
Indices: 35063390--35063595 Score: 312
Period size: 105 Copynumber: 1.9 Consensus size: 107
35063380 GTTTCGTGCC
*
35063390 AGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTCGATGTATTATATCAAGATTTGTGC
1 AGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTCGATGTATTATATCAAGATTTGGGC
* *
35063455 CTAGTAGGCTTTGTGCT-G-GT-TTATTATCAGGCTTCATGCA
66 CTAGCAGGCTTCGTGCTAGTGTATTA-TATCAGGCTTCATGCA
* *
35063495 AGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTG-CTGGTGTATTATATCAAGCTTTGGG
1 AGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTC-GATGTATTATATCAAGATTTGGG
*
35063559 CTTAGCAGGCTTCGTGCTAGTGTATTATATCAGGCTT
65 CCTAGCAGGCTTCGTGCTAGTGTATTATATCAGGCTT
35063596 TCTGACTAGT
Statistics
Matches: 91, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
104 1 0.01
105 74 0.81
106 1 0.01
107 12 0.13
108 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (107 bp):
AGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTCGATGTATTATATCAAGATTTGGGC
CTAGCAGGCTTCGTGCTAGTGTATTATATCAGGCTTCATGCA
Found at i:35063587 original size:228 final size:229
Alignment explanation
Indices: 35063268--35063693 Score: 572
Period size: 228 Copynumber: 1.9 Consensus size: 229
35063258 TTCATGTCGA
* **
35063268 TGTATTATATCAGGCCTTTATGCCTAGTAGGCTTCATGCTAGTGTATTATATCAAGCTTTATTCT
1 TGTATTATATCAGGCCTTTATGCCTAGCAGGCTTCATGCTAGTGTATTATATCAAGCTTTAGGCT
* * * * * *
35063333 TAGCAGGCTTCGTGTCGGTGTATTATATTAGGAGTTGTGCCTTGTAGGTTTCGTGCCAGTGTATT
66 TAGCAGGCTTCGTGTCAGTGTATTATATCAGGAGTTCTGACTAGTAGGCTTCGTGCCAGTGTATT
* ** * *
35063398 ATATCAGGCTTTGTGCCTAGCAGGCTTTGTGTC-GATGTATTATATCAAGA-TTTGTGCCTAGTA
131 ATATCAAGCTTTGTGCCTAAAAAGCTTTGT-TCTGATGTATTATATC-AGACTTTGAGCCTAGTA
35063461 GGCTTTGTGCTGGTTTATTATCAGGCTTCATGCAAG
194 GGCTTTGTGCTGGTTTATTATCAGGCTTCATGCAAG
* ** * *
35063497 TGTATTATATCAGG-CTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATCAAGCTTTGGGCT
1 TGTATTATATCAGGCCTTTATGCCTAGCAGGCTTCATGCTAGTGTATTATATCAAGCTTTAGGCT
** *
35063561 TAGCAGGCTTCGTG-CTAGTGTATTATATCAGGCTTTCTGACTAGTAGGCTTCGTGTCAGTGTAT
66 TAGCAGGCTTCGTGTC-AGTGTATTATATCAGGAGTTCTGACTAGTAGGCTTCGTGCCAGTGTAT
* * *
35063625 TATATTAAGCTTTGTGCCTAAAAAGCTTTGTTCTGGTGTGTTATATCAGACTTTGAGCCTAGTAG
130 TATATCAAGCTTTGTGCCTAAAAAGCTTTGTTCTGATGTATTATATCAGACTTTGAGCCTAGTAG
35063690 GCTT
195 GCTT
35063694 CGTGTCAGTG
Statistics
Matches: 169, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
227 6 0.04
228 149 0.88
229 14 0.08
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.40
Consensus pattern (229 bp):
TGTATTATATCAGGCCTTTATGCCTAGCAGGCTTCATGCTAGTGTATTATATCAAGCTTTAGGCT
TAGCAGGCTTCGTGTCAGTGTATTATATCAGGAGTTCTGACTAGTAGGCTTCGTGCCAGTGTATT
ATATCAAGCTTTGTGCCTAAAAAGCTTTGTTCTGATGTATTATATCAGACTTTGAGCCTAGTAGG
CTTTGTGCTGGTTTATTATCAGGCTTCATGCAAG
Found at i:35063623 original size:82 final size:82
Alignment explanation
Indices: 35063482--35063748 Score: 311
Period size: 82 Copynumber: 3.3 Consensus size: 82
35063472 GGTTTATTAT
* * * * *
35063482 CAGGCTTCATGCAAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTG-CTGGTGTATTAT
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAGTAGGCTTCGTGTC-AGTGTATTAT
* *
35063546 ATCAAGCTTTGGGCTTAG
65 ATCAAGCTTTGAGCTTAA
* *
35063564 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTCTGACTAGTAGGCTTCGTGTCAGTGTATTATA
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAGTAGGCTTCGTGTCAGTGTATTATA
* * *
35063629 TTAAGCTTTGTGCCTAA
66 TCAAGCTTTGAGCTTAA
* * * * * * * * *
35063646 AAAGCTTTGTTCTGGTGTGTTATATCAGACTTTGAGCCTAGTAGGCTTCGTGTCAGTGTGTTATA
1 CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAGTAGGCTTCGTGTCAGTGTATTATA
* *
35063711 TCAGGTTTTGAGCTTAA
66 TCAAGCTTTGAGCTTAA
35063728 CAGGCTTCGTGCTAGTGTATT
1 CAGGCTTCGTGCTAGTGTATT
35063749 GTATTAGGTA
Statistics
Matches: 151, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
82 150 0.99
83 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (82 bp):
CAGGCTTCGTGCTAGTGTATTATATCAGGCTTTGTGCCTAGTAGGCTTCGTGTCAGTGTATTATA
TCAAGCTTTGAGCTTAA
Found at i:35063626 original size:146 final size:146
Alignment explanation
Indices: 35063350--35063627 Score: 337
Period size: 146 Copynumber: 1.9 Consensus size: 146
35063340 CTTCGTGTCG
* * * * *
35063350 GTGTATTATATTAGGAGTTGTGCCTTGTAGGTTTCGTGCCAGTGTATTATATCAGGCTTTGTGCC
1 GTGTATTATATCAGGAGTTGTGCCTAGCAGGTTTCGTGCCAGTGTATTATATCAAGCTTTGGGCC
* * * * * * *
35063415 TAGCAGGCTTTGTGTCGATGTATTATATCAAGATTTGTGCCTAGTAGGCTTTGTGCTGGTTTATT
66 TAGCAGGCTTCGTGTAGATGTATTATATCAAGATTTCTGACTAGTAGGCTTCGTGCTAGTGTATT
35063480 ATCAGGCTTCATGCAA
131 ATCAGGCTTCATGCAA
** **
35063496 GTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTT-GTGCTGGTGTATTATATCAAGCTTTGGGC
1 GTGTATTATATCAGGAGTTGTGCCTAGCAGG-TTTCGTGCCAGTGTATTATATCAAGCTTTGGGC
* * *
35063560 TTAGCAGGCTTCGTGCTAG-TGTATTATATCAGGCTTTCTGACTAGTAGGCTTCGTG-TCAGTGT
65 CTAGCAGGCTTCGTG-TAGATGTATTATATCAAGATTTCTGACTAGTAGGCTTCGTGCT-AGTGT
35063623 ATTAT
128 ATTAT
35063628 ATTAAGCTTT
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
145 1 0.01
146 104 0.95
147 5 0.05
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (146 bp):
GTGTATTATATCAGGAGTTGTGCCTAGCAGGTTTCGTGCCAGTGTATTATATCAAGCTTTGGGCC
TAGCAGGCTTCGTGTAGATGTATTATATCAAGATTTCTGACTAGTAGGCTTCGTGCTAGTGTATT
ATCAGGCTTCATGCAA
Found at i:35063626 original size:187 final size:187
Alignment explanation
Indices: 35063296--35063644 Score: 470
Period size: 187 Copynumber: 1.9 Consensus size: 187
35063286 TATGCCTAGT
* * *
35063296 AGGCTTCATGCTAGTGTATTATATCAAGCTTTATTCTTAGCAGGCTTCGTGTCGGTGTATTATAT
1 AGGCTTCATGCAAGTGTATTATATCAAGCTTTATGCCTAGCAGGCTTCGTGTCGGTGTATTATAT
* * * * * * *
35063361 TAGGAGTTGTGCCTTGTAGGTTTCGTGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTT
66 CAAGAGTTGTGCCTTGCAGGCTTCGTGCCAGTGTATTATATCAGGCTTTCTGACTAGCAGGCTTC
35063426 GTGTCGATGTATTATATCAAGATTTGTGCCTAGTAGGCTTTGTGCTGGTTTATTATC
131 GTGTCGATGTATTATATCAAGATTTGTGCCTAGTAGGCTTTGTGCTGGTTTATTATC
* * *
35063483 AGGCTTCATGCAAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTG-CTGGTGTATTATA
1 AGGCTTCATGCAAGTGTATTATATCAAGCTTTATGCCTAGCAGGCTTCGTGTC-GGTGTATTATA
** * * *
35063547 TCAAGCTTTG-GGCTTAGCAGGCTTCGTGCTAGTGTATTATATCAGGCTTTCTGACTAGTAGGCT
65 TCAAGAGTTGTGCCTT-GCAGGCTTCGTGCCAGTGTATTATATCAGGCTTTCTGACTAGCAGGCT
* *
35063611 TCGTGTC-AGTGTATTATATTAAGCTTTGTGCCTA
129 TCGTGTCGA-TGTATTATATCAAGATTTGTGCCTA
35063645 AAAAGCTTTG
Statistics
Matches: 139, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
186 6 0.04
187 133 0.96
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (187 bp):
AGGCTTCATGCAAGTGTATTATATCAAGCTTTATGCCTAGCAGGCTTCGTGTCGGTGTATTATAT
CAAGAGTTGTGCCTTGCAGGCTTCGTGCCAGTGTATTATATCAGGCTTTCTGACTAGCAGGCTTC
GTGTCGATGTATTATATCAAGATTTGTGCCTAGTAGGCTTTGTGCTGGTTTATTATC
Found at i:35063640 original size:123 final size:123
Alignment explanation
Indices: 35063482--35063754 Score: 322
Period size: 123 Copynumber: 2.2 Consensus size: 123
35063472 GGTTTATTAT
* * * * ** *
35063482 CAGGCTTCATGCAAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATA
1 CAGGCTTCGTGCTAGTGTATTATATTAAGCTTTGTGCCTAAAAAGCTTTGTGCTGGTGTATTATA
* * *
35063547 TCA-AGCTTTGGGCTTAGCAGGCTTCGTG-CTAGTGTATTATATCAGGCTTTCTGA-C-TAG
66 TCAGA-CTTTGAGCCTAGCAGGCTTCGTGTC-AGTGTATTATATCAGG-TTT-TGAGCTTAA
* * *
35063605 TAGGCTTCGTG-TCAGTGTATTATATTAAGCTTTGTGCCTAAAAAGCTTTGTTCTGGTGTGTTAT
1 CAGGCTTCGTGCT-AGTGTATTATATTAAGCTTTGTGCCTAAAAAGCTTTGTGCTGGTGTATTAT
* *
35063669 ATCAGACTTTGAGCCTAGTAGGCTTCGTGTCAGTGTGTTATATCAGGTTTTGAGCTTAA
65 ATCAGACTTTGAGCCTAGCAGGCTTCGTGTCAGTGTATTATATCAGGTTTTGAGCTTAA
*
35063728 CAGGCTTCGTGCTAGTGTATTGTATTA
1 CAGGCTTCGTGCTAGTGTATTATATTA
35063755 GGTAAGTTGT
Statistics
Matches: 127, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
121 3 0.02
122 4 0.03
123 117 0.92
124 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.25, T:0.39
Consensus pattern (123 bp):
CAGGCTTCGTGCTAGTGTATTATATTAAGCTTTGTGCCTAAAAAGCTTTGTGCTGGTGTATTATA
TCAGACTTTGAGCCTAGCAGGCTTCGTGTCAGTGTATTATATCAGGTTTTGAGCTTAA
Found at i:35065307 original size:47 final size:47
Alignment explanation
Indices: 35065253--35065344 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
35065243 CCTTAGGCTC
35065253 GATTTAAGGCTCGTAAAAGTATTTATGCTATACTCAAGTTATGTTAT
1 GATTTAAGGCTCGTAAAAGTATTTATGCTATACTCAAGTTATGTTAT
*
35065300 GATTTAAGGCTCGTAAAAGTATTTATGCTATATTCAAGTTATGTT
1 GATTTAAGGCTCGTAAAAGTATTTATGCTATACTCAAGTTATGTT
35065345 GTCGAATGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (47 bp):
GATTTAAGGCTCGTAAAAGTATTTATGCTATACTCAAGTTATGTTAT
Found at i:35067942 original size:11 final size:11
Alignment explanation
Indices: 35067926--35067954 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
35067916 ATATTTGGCA
35067926 TGTTTTAAGTG
1 TGTTTTAAGTG
35067937 TGTTTTAAGTG
1 TGTTTTAAGTG
35067948 TGTTTTA
1 TGTTTTA
35067955 GTCATGTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.24, T:0.59
Consensus pattern (11 bp):
TGTTTTAAGTG
Found at i:35074907 original size:4 final size:4
Alignment explanation
Indices: 35074898--35074924 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
35074888 AAACTAAGTA
35074898 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
35074925 AATAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:35076330 original size:23 final size:22
Alignment explanation
Indices: 35076278--35076330 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
35076268 TCCACGTCTT
*
35076278 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
35076300 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
35076323 TTTCTTTT
1 TTTCTTTT
35076331 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:35078689 original size:4 final size:4
Alignment explanation
Indices: 35078680--35078704 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
35078670 AAACTAAGTA
35078680 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
35078705 GAAATAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:35081247 original size:18 final size:18
Alignment explanation
Indices: 35081216--35081262 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
35081206 AATTGAAAGT
**
35081216 ATATATAATTTATTATAAA
1 ATATATAAAATATTA-AAA
*
35081235 A-ATATGAAATATTAAAA
1 ATATATAAAATATTAAAA
35081252 ATATATAAAAT
1 ATATATAAAAT
35081263 TACATAAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 4 0.17
18 18 0.78
19 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
ATATATAAAATATTAAAA
Found at i:35087915 original size:3 final size:3
Alignment explanation
Indices: 35087903--35087940 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
35087893 TAATCAAAAC
*
35087903 ATA A-A ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
35087941 TCGAATGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:35089725 original size:51 final size:51
Alignment explanation
Indices: 35089646--35089915 Score: 172
Period size: 51 Copynumber: 5.5 Consensus size: 51
35089636 GACTTTAACT
* * **
35089646 TGCTCTACTGCTACTTCAGAGAGCTAAGATCCGTAACTTATAGCTTCAATC
1 TGCTCTACTGCAACTTCAGGGAAATAAGATCCGTAACTTATAGCTTCAATC
* * * *
35089697 TGCTCTACTGCAACTTCAGGGAAATAAGAT---TCAC-TAT--CTTTAGTA
1 TGCTCTACTGCAACTTCAGGGAAATAAGATCCGTAACTTATAGCTTCAATC
* * *
35089742 TGCTCCTACTGCAACTTCAGGGAGATAAGA-CTCGCAACTTTTAGCTTCAATC
1 TGCT-CTACTGCAACTTCAGGGAAATAAGATC-CGTAACTTATAGCTTCAATC
* * * ** *
35089794 TGCTCCACGGCAATTTCAGGGAAATAAGAT---TTGC-TAT--CTTCAGTC
1 TGCTCTACTGCAACTTCAGGGAAATAAGATCCGTAACTTATAGCTTCAATC
* * * * * * *
35089839 TACTCTTACTGTAACTTCGGGGAGATAAGA-CTCGCAACTTGTAGCTTCAATT
1 TGCTC-TACTGCAACTTCAGGGAAATAAGATC-CGTAACTTATAGCTTCAATC
* *
35089891 TACTCTACTGCAACTTTAGGGAAAT
1 TGCTCTACTGCAACTTCAGGGAAAT
35089916 GATATTCGCT
Statistics
Matches: 161, Mismatches: 41, Indels: 34
0.68 0.17 0.14
Matches are distributed among these distances:
45 20 0.12
46 42 0.26
47 5 0.03
48 4 0.02
49 3 0.02
50 4 0.02
51 63 0.39
52 20 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (51 bp):
TGCTCTACTGCAACTTCAGGGAAATAAGATCCGTAACTTATAGCTTCAATC
Found at i:35089785 original size:46 final size:46
Alignment explanation
Indices: 35089697--35089875 Score: 130
Period size: 46 Copynumber: 3.8 Consensus size: 46
35089687 AGCTTCAATC
* * *
35089697 TGCT-CTACTGCAACTTCAGGGAAATAAGATTCACTATCTTTAGTA
1 TGCTCCTACTGCAACTTCAGGGAAATAAGACTCGCAATCTTTAGTA
*
35089742 TGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAA-CTTTTAGCTTCAA
1 TGCTCCTACTGCAACTTCAGGGAAATAAGACTCGCAATC-TTTAG--T--A
* * * * * * *
35089792 TCTGCTCC-ACGGCAATTTCAGGGAAATAAGATTTGCTATCTTCAGTC
1 --TGCTCCTACTGCAACTTCAGGGAAATAAGACTCGCAATCTTTAGTA
* * * * *
35089839 TACTCTTACTGTAACTTCGGGGAGATAAGACTCGCAA
1 TGCTCCTACTGCAACTTCAGGGAAATAAGACTCGCAA
35089876 CTTGTAGCTT
Statistics
Matches: 102, Mismatches: 22, Indels: 19
0.71 0.15 0.13
Matches are distributed among these distances:
45 9 0.09
46 55 0.54
48 1 0.01
49 1 0.01
50 1 0.01
51 28 0.27
52 7 0.07
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (46 bp):
TGCTCCTACTGCAACTTCAGGGAAATAAGACTCGCAATCTTTAGTA
Found at i:35089787 original size:97 final size:97
Alignment explanation
Indices: 35089646--35089963 Score: 390
Period size: 97 Copynumber: 3.3 Consensus size: 97
35089636 GACTTTAACT
* * * *
35089646 TGCT-CTACTGCTACTTCAGAGAGCTAAGA-TCCGTAACTTATAGCTTCAATCTGCTCTACTGCA
1 TGCTCCTACTGCAACTTCAGGGAGATAAGACT-CGCAACTTATAGCTTCAATCTGCTCTACTGCA
* * *
35089709 ACTTCAGGGAAATAAGATTCACTATCTTTAGTA
65 ACTTCAGGGAAATAAGATTCGCTATCTTCAGTC
* * *
35089742 TGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTTTAGCTTCAATCTGCTCCACGGCAA
1 TGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTATAGCTTCAATCTGCTCTACTGCAA
* *
35089807 TTTCAGGGAAATAAGATTTGCTATCTTCAGTC
66 CTTCAGGGAAATAAGATTCGCTATCTTCAGTC
* * * * * * *
35089839 TACTCTTACTGTAACTTCGGGGAGATAAGACTCGCAACTTGTAGCTTCAATTTACTCTACTGCAA
1 TGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTATAGCTTCAATCTGCTCTACTGCAA
* * *
35089904 CTTTAGGGAAATGATATTCGCTATCTTCAGTC
66 CTTCAGGGAAATAAGATTCGCTATCTTCAGTC
* *
35089936 TGCTTC-GCTGCAACTTCAGGGAGATAAG
1 TGCTCCTACTGCAACTTCAGGGAGATAAG
35089964 GCTGGTGGCT
Statistics
Matches: 188, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
96 23 0.12
97 164 0.87
98 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (97 bp):
TGCTCCTACTGCAACTTCAGGGAGATAAGACTCGCAACTTATAGCTTCAATCTGCTCTACTGCAA
CTTCAGGGAAATAAGATTCGCTATCTTCAGTC
Found at i:35090046 original size:143 final size:143
Alignment explanation
Indices: 35089894--35090445 Score: 764
Period size: 143 Copynumber: 3.9 Consensus size: 143
35089884 TTCAATTTAC
* * * * * *
35089894 TCTACTGCAACTTTAGGGAAATGATATTCGCTATCTTCAGTCTGCTTCGCTGCAACTTCAGGGAG
1 TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
* *
35089959 ATAAGGCTGGTGGCTTTAATCTGCTCCACTACAACTTCAAGAAGATAAGAT-TCGCCATAATTTG
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCT-GCCATAATTTG
*
35090023 TAGCTTTAATTTGT
130 TAGCTTTAATCTGT
* * * *
35090037 TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTTCGCTGCAATTTCGGGGAG
1 TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
* ** * *
35090102 ATAAGGCTGATGGCTTCAATCTGCTCCACTGTAATTTCAGGAAGATAAGATCTGTCATAATTTGT
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATAATTTGT
35090167 AGCTTTAATCTGT
131 AGCTTTAATCTGT
* * * * * * *
35090180 TCCACTACAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAGAGAG
1 TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
35090245 ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATAATTTGT
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATAATTTGT
35090310 AGCTTTAATCTGT
131 AGCTTTAATCTGT
* * * *
35090323 TCTACTGTAACGTCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCCGCTGTAACTTCAAGGAG
1 TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
* * * * * * *
35090388 ATAAGGCTGGTGGATTCAATTTGCTCAACTGCAACTTTAGGAAGATAAAATCCGCCAT
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCAT
35090446 CTTCGATCTA
Statistics
Matches: 358, Mismatches: 50, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
143 357 1.00
144 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (143 bp):
TCTACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAG
ATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATAATTTGT
AGCTTTAATCTGT
Found at i:35096483 original size:3 final size:3
Alignment explanation
Indices: 35096454--35096510 Score: 62
Period size: 3 Copynumber: 18.7 Consensus size: 3
35096444 GTTCTAATTC
* * *
35096454 TAA TAT TAA TAA TCAA AACA TAA -AA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
35096500 TAA TAA TAA TA
1 TAA TAA TAA TA
35096511 TCGAATGATG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 2 0.04
3 39 0.87
4 4 0.09
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:35118148 original size:50 final size:50
Alignment explanation
Indices: 35118068--35118401 Score: 366
Period size: 50 Copynumber: 6.8 Consensus size: 50
35118058 TGACGCTAGG
*
35118068 GATATATGAGAGCTAGTGTAAGACCGTGTCTGGGACATGGCATC-AGCCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCTC
* * * *
35118118 GATATATGAGAACTAGTGTAAGACTATGTCTGGTACATGGCATCG-GCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* *
35118167 G--ATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGACACT-
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTC
* * *
35118213 GATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGACATCGGAAC-C
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCTC
* * *
35118263 GATAGATGAGAGCCAGTGTAAGAGCATGTCTGGGACATGGCATCGACCTC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * * *
35118313 AATATACGAGAG-TCAGTGTAAGACCATGTCTCGGACATGGCATCGACTTT
1 GATATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * *
35118363 GATGTCT--GAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
35118402 GTCGGCACCC
Statistics
Matches: 237, Mismatches: 35, Indels: 26
0.80 0.12 0.09
Matches are distributed among these distances:
45 29 0.12
46 2 0.01
47 8 0.03
48 35 0.15
49 8 0.03
50 153 0.65
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
GATATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:35122256 original size:55 final size:53
Alignment explanation
Indices: 35122172--35122417 Score: 247
Period size: 55 Copynumber: 4.6 Consensus size: 53
35122162 CATTAGGGTT
*
35122172 CAAGGATACCATGAAAGACCATG-CAAAGACATGGCAATTGGAAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGAAA-GTTTCTAAGG
* *
35122227 CAAGGATATCATGTAAGACCATGTCAAGACATGGCATT-GATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGA-AAGTT--TCTAAGG
* * * **
35122282 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGAAAGTTTC-TAAGG
* *
35122335 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAGTGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGAAAGTTTCTAAGG
* * *
35122385 -AAGGATACCACGTAAGACCATGACAAGCCATGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGG
35122418 AAATGGTAAG
Statistics
Matches: 164, Mismatches: 18, Indels: 24
0.80 0.09 0.12
Matches are distributed among these distances:
49 30 0.18
52 7 0.04
53 44 0.27
54 9 0.05
55 68 0.41
56 6 0.04
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGAAAGTTTCTAAGG
Found at i:35122379 original size:108 final size:110
Alignment explanation
Indices: 35122180--35122380 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
35122170 TTCAAGGATA
*
35122180 CCATGAAAGACCATGCAAAGACATGGCAATTGGAAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGAAAGACCATGCAAAGACATGGCAATTGGAAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
35122245 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTC
* * * **
35122290 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGAAAGACCATGCAAAGACATGGCAATTGGAAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
35122352 ACCATGTCAAGACATGGCAGTGGTAAGTT
65 ACCATGTCAAGACATGGCAGTGATAAGTT
35122381 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.60
109 6 0.07
110 24 0.29
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGAAAGACCATGCAAAGACATGGCAATTGGAAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAAGGTC
Found at i:35125278 original size:180 final size:179
Alignment explanation
Indices: 35124955--35125533 Score: 820
Period size: 180 Copynumber: 3.2 Consensus size: 179
35124945 TCCATTTTCA
* * * * * *
35124955 ATCTGCTCCACTGCAAGTTCAGGGAAATAAAATCTTCAATTCTCAATCTGCTTCCTTGTTATCTC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
* **
35125020 AGGAAGATAAGACTCATTCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCTTGGTAATA
66 AGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGT-
* *
35125085 AAATCTACTCCATTGCCAATACATGGAGATAAGATTCACCATCTGTGAAG
130 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGTGAAG
*
35125135 ATCTGCTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
* * * *
35125200 AGGAAGATAAGACTCATTCTTCATCCTGCTCTCTTGCTATCTCAGAGAGATAAGGTTTGATGGTA
66 AGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGTA
* * *
35125265 ACATCTGCTCCATTGCTGATACATGGAGATAAGATTCACCATC-ATAAAG
131 A-ATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGTGAAG
* * *
35125314 ATCTACTCCGCTGCAACTTCAGGGAGATAATATCCTCAATTCTCAGTCTGCTTCCTTGCTACCTC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
* * ** *
35125379 AGAAAGATAAGACTCATTCTTTAACCTATTCTCTTGCTACCTCAGAGAGACAAGGCTTGGTGGTG
66 AGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGT-
*
35125444 AAATCTGCTCCATTGCCGATACATGGAGATAA-ATTTCACCATCTGCGAAG
130 AAATCTGCTCCATTGCCGATACATGGAGATAAGA-TTCACCATCTGTGAAG
* * * *
35125494 ATCTACTCCGCTGCAACTTCAAGGAGTTAAGATCTTCAAT
1 ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAAT
35125534 CTTTACCAAT
Statistics
Matches: 357, Mismatches: 38, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
178 1 0.00
179 160 0.45
180 196 0.55
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (179 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTC
AGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGGTGGTA
AATCTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCTGTGAAG
Found at i:35133966 original size:15 final size:15
Alignment explanation
Indices: 35133946--35133983 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
35133936 ATTATAATTT
35133946 TAATGCAATATG-ATG
1 TAATGCAA-ATGCATG
35133961 TAATGCAAATGCATG
1 TAATGCAAATGCATG
35133976 -AATGCAAA
1 TAATGCAAA
35133984 GGAGGCATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (15 bp):
TAATGCAAATGCATG
Found at i:35137055 original size:26 final size:26
Alignment explanation
Indices: 35137026--35137133 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
35137016 TGGTACAAAT
*
35137026 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
35137052 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
35137078 TGATAATGGGTTAGGTAAACATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
35137104 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
35137130 TGAT
1 TGAT
35137134 GGACATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:35146101 original size:29 final size:29
Alignment explanation
Indices: 35146068--35146126 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
35146058 TATAACAGAG
* **
35146068 TAAGTTCTGTATATTATGTGTTAATATGC
1 TAAGTTCGGTATATTACATGTTAATATGC
*
35146097 TAAGTTCGGTATGTTACATGTTAATATGC
1 TAAGTTCGGTATATTACATGTTAATATGC
35146126 T
1 T
35146127 TAGAACATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (29 bp):
TAAGTTCGGTATATTACATGTTAATATGC
Found at i:35146508 original size:21 final size:21
Alignment explanation
Indices: 35146482--35146521 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
35146472 ATTTTCTCTG
*
35146482 ATATGATATA-TGTTTCTGAAT
1 ATATGAAATATTG-TTCTGAAT
35146503 ATATGAAATATTGTTCTGA
1 ATATGAAATATTGTTCTGA
35146522 TAATTACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (21 bp):
ATATGAAATATTGTTCTGAAT
Found at i:35166791 original size:27 final size:27
Alignment explanation
Indices: 35166761--35166938 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35166751 ATATTGAGTC
* * * *
35166761 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35166788 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35166815 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35166843 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35166870 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35166897 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35166924 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35166939 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35166900 original size:82 final size:81
Alignment explanation
Indices: 35166782--35166937 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35166772 TGCTATATAA
* *
35166782 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35166847 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35166864 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35166928 CACTTAGTGC
65 CACTTAGTGC
35166938 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35174540 original size:27 final size:27
Alignment explanation
Indices: 35174510--35174685 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
35174500 ATATTGAGTC
* * * *
35174510 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35174537 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35174564 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35174592 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35174619 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35174646 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35174673 CGCACACTTAGTG
1 CGCACACTTAGTG
35174686 TGTACAATTT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35174649 original size:82 final size:81
Alignment explanation
Indices: 35174531--35174685 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
35174521 TGCTATATAA
* *
35174531 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35174596 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35174613 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35174677 CACTTAGTG
65 CACTTAGTG
35174686 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35178670 original size:46 final size:46
Alignment explanation
Indices: 35178603--35178731 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 46
35178593 AATCTCACCT
* * * *
35178603 ATAATGAACTCGGAATGCAACTCAACGAGCTCGGGTG-TTCGCATCC
1 ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTT-GCATAC
* * *
35178649 ATAATGAACTCGGAACACAACTCAATGAGTTTGGATGCTTGCATAC
1 ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCATAC
* *
35178695 ATAGGTGAACTCGGAACGTAACTCAACGAGTTCGGAT
1 ATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGAT
35178732 CCCTCATAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 39 0.57
47 30 0.43
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (46 bp):
ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCATAC
Found at i:35181358 original size:45 final size:45
Alignment explanation
Indices: 35181260--35181418 Score: 184
Period size: 45 Copynumber: 3.6 Consensus size: 45
35181250 CCGGTATTTT
* * * *
35181260 GCCTGCTAGGCTC-GAGGCCCG-ATA-TCATTTCACTGGCACTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGACATTATA
*
35181303 GCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGACATTATA
1 GCCTGCTAGGCTC-AAAGGCCCGAATAGTATTTCACCGACATTATA
* *
35181348 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCA-CTAGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGA-CATTATA
*
35181393 GCCTGCTAGGCACAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATA
35181419 CACATCACCG
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 13 0.13
44 10 0.10
45 77 0.76
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGACATTATA
Found at i:35181459 original size:42 final size:43
Alignment explanation
Indices: 35181392--35181571 Score: 249
Period size: 42 Copynumber: 4.2 Consensus size: 43
35181382 CTAGCATCAT
35181392 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
* * *
35181435 AGCCTG-TAGGCACGAAGGCTCGAATACACATCACCAGCAA-GA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACC-GGAACGA
* * * * *
35181477 AGCCTACTAGGCACGAAGGCCTGAATACACATCACCAGCACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
*
35181520 AG-CTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
35181562 AGCCTGCTAG
1 AGCCTGCTAG
35181572 ATTTAACCCG
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
42 73 0.61
43 47 0.39
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.11
Consensus pattern (43 bp):
AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
Found at i:35181496 original size:85 final size:85
Alignment explanation
Indices: 35181350--35181571 Score: 266
Period size: 85 Copynumber: 2.6 Consensus size: 85
35181340 ACATTATAGC
* * ** * **
35181350 CTGCTAGGCTCAAAGGCCCGAATAGTATTTCACTAGCATCATAGCCTGCTAGGCACAAAGGCCCG
1 CTGCTAGGCACAAAGGCCCGAATA-CACATCACCAGCAAGA-AGCCTGCTAGGCACAAAGGCCCG
*
35181415 AATACACATCACCGGAACGAAG
64 AATACACATCACCAGAACGAAG
* * * * *
35181437 CCTG-TAGGCACGAAGGCTCGAATACACATCACCAGCAAGAAGCCTACTAGGCACGAAGGCCTGA
1 -CTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAGGCACAAAGGCCCGA
*
35181501 ATACACATCACCAGCACGAAG
65 ATACACATCACCAGAACGAAG
* *
35181522 CTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 CTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAG
35181572 ATTTAACCCG
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
84 3 0.03
85 81 0.71
86 10 0.09
87 17 0.15
88 3 0.03
ACGTcount: A:0.33, C:0.31, G:0.23, T:0.14
Consensus pattern (85 bp):
CTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAGGCACAAAGGCCCGAA
TACACATCACCAGAACGAAG
Found at i:35198804 original size:58 final size:58
Alignment explanation
Indices: 35198714--35198830 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
35198704 CATCGTTAAC
35198714 TTCCTTTGATACAATTCTTGTTCATATCCAAAAGAAAATTGGTTCAAATCCACTCACG
1 TTCCTTTGATACAATTCTTGTTCATATCCAAAAGAAAATTGGTTCAAATCCACTCACG
*
35198772 TTCCTTTGATAGAATTCTTGTTCATATCCAAAAGAAAATTGGTTCAAATCCACTCACG
1 TTCCTTTGATACAATTCTTGTTCATATCCAAAAGAAAATTGGTTCAAATCCACTCACG
35198830 T
1 T
35198831 ACATGATGAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (58 bp):
TTCCTTTGATACAATTCTTGTTCATATCCAAAAGAAAATTGGTTCAAATCCACTCACG
Found at i:35199311 original size:21 final size:19
Alignment explanation
Indices: 35199275--35199324 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
35199265 TATTATATCC
*
35199275 AATATAAATTAATAATATTTA
1 AATATAAAATAAT-A-ATTTA
*
35199296 AATATAAAATATTAATTTA
1 AATATAAAATAATAATTTA
35199315 ATATATAAAA
1 A-ATATAAAA
35199325 CAAAATATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 6 0.23
20 9 0.35
21 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATATAAAATAATAATTTA
Found at i:35199754 original size:9 final size:9
Alignment explanation
Indices: 35199740--35199790 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
35199730 CACATCCTTT
35199740 TCTCAACTC
1 TCTCAACTC
*
35199749 TCTCAAACCC
1 TCTC-AACTC
*
35199759 TCTCAAGTC
1 TCTCAACTC
* *
35199768 TCTCGACTT
1 TCTCAACTC
35199777 TCTCAACTC
1 TCTCAACTC
35199786 TCTCA
1 TCTCA
35199791 TTTTGATTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.22, C:0.41, G:0.04, T:0.33
Consensus pattern (9 bp):
TCTCAACTC
Found at i:35204578 original size:40 final size:40
Alignment explanation
Indices: 35204508--35204605 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 40
35204498 AAACCAAGTA
* * *
35204508 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
35204547 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATG
35204587 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35204606 TTATCATCCG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 14 0.26
40 40 0.74
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
Found at i:35212456 original size:39 final size:40
Alignment explanation
Indices: 35212376--35212472 Score: 137
Period size: 39 Copynumber: 2.5 Consensus size: 40
35212366 AAACCAAGTA
* * *
35212376 CCTTCGGGATTTAG-CTGGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAACTG
35212415 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAA-TG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAACTG
35212454 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
35212473 TTATCATCCG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 35 0.66
40 18 0.34
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAACTG
Found at i:35214893 original size:24 final size:23
Alignment explanation
Indices: 35214866--35214965 Score: 96
Period size: 23 Copynumber: 4.3 Consensus size: 23
35214856 TGATAAACAA
35214866 TAAGCTCTATTGAGCTAGAAACGG
1 TAAGCTCTATTGAGCT-GAAACGG
*
35214890 TAAGCTCTATTAAGCTGAATA--G
1 TAAGCTCTATTGAGCTGAA-ACGG
* *
35214912 TAAGCTCTTTTGAGCTGAATCGG
1 TAAGCTCTATTGAGCTGAAACGG
* * * **
35214935 TAAGCTCCAATGAGTTGAAATAG
1 TAAGCTCTATTGAGCTGAAACGG
35214958 TAAGCTCT
1 TAAGCTCT
35214966 TACGAGCTAA
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
22 18 0.30
23 27 0.44
24 16 0.26
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACGG
Found at i:35214917 original size:22 final size:22
Alignment explanation
Indices: 35214866--35214987 Score: 95
Period size: 23 Copynumber: 5.3 Consensus size: 22
35214856 TGATAAACAA
35214866 TAAGCTCTATTGAGCTAGAA-ACGG
1 TAAGCTCTATTGAGCT-GAATA--G
*
35214890 TAAGCTCTATTAAGCTGAATAG
1 TAAGCTCTATTGAGCTGAATAG
* *
35214912 TAAGCTCTTTTGAGCTGAATCGG
1 TAAGCTCTATTGAGCTGAAT-AG
* * *
35214935 TAAGCTCCAATGAGTTGAAATAG
1 TAAGCTCTATTGAGCTG-AATAG
* *
35214958 TAAGCTCT-TACGAGCTAAATCAG
1 TAAGCTCTAT-TGAGCTGAAT-AG
35214981 TAAGCTC
1 TAAGCTC
35214988 ATACGAGTTG
Statistics
Matches: 79, Mismatches: 14, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
22 22 0.28
23 38 0.48
24 19 0.24
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (22 bp):
TAAGCTCTATTGAGCTGAATAG
Found at i:35214925 original size:46 final size:46
Alignment explanation
Indices: 35214866--35214966 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 46
35214856 TGATAAACAA
* * *
35214866 TAAGCTCTATTGAGCTAGAAACGGTAAGCTCTATTAAGCTG-AATAG
1 TAAGCTCTTTTGAGCT-GAAACGGTAAGCTCCAATAAGCTGAAATAG
* * *
35214912 TAAGCTCTTTTGAGCTGAATCGGTAAGCTCCAATGAGTTGAAATAG
1 TAAGCTCTTTTGAGCTGAAACGGTAAGCTCCAATAAGCTGAAATAG
35214958 TAAGCTCTT
1 TAAGCTCTT
35214967 ACGAGCTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 19 0.40
46 29 0.60
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.31
Consensus pattern (46 bp):
TAAGCTCTTTTGAGCTGAAACGGTAAGCTCCAATAAGCTGAAATAG
Found at i:35214996 original size:46 final size:46
Alignment explanation
Indices: 35214907--35214997 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
35214897 TATTAAGCTG
** * * *
35214907 AATAGTAAGCTCTTTTGAGCTGAATCGGTAAGCTCCAATGAGTTGA
1 AATAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCCAACGAGTTGA
35214953 AATAGTAAGCTCTTACGAGCTAAATCAGTAAGCT-CATACGAGTTG
1 AATAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCCA-ACGAGTTG
35214998 TGGTGAGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 2 0.05
46 37 0.95
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (46 bp):
AATAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCCAACGAGTTGA
Found at i:35215803 original size:19 final size:19
Alignment explanation
Indices: 35215779--35215815 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
35215769 TGAGACAAGG
*
35215779 AACACGCTCGTGTGCTCTC
1 AACACGCTCGTGTCCTCTC
35215798 AACACGCTCGTGTCCTCT
1 AACACGCTCGTGTCCTCT
35215816 AGCTGTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
AACACGCTCGTGTCCTCTC
Found at i:35247080 original size:27 final size:27
Alignment explanation
Indices: 35247050--35247227 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35247040 ATATTGAGTC
* * * *
35247050 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35247077 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35247104 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35247132 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35247159 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35247186 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35247213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35247228 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35247189 original size:82 final size:81
Alignment explanation
Indices: 35247071--35247226 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35247061 TGCTATATAA
* *
35247071 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35247136 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35247153 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35247217 CACTTAGTGC
65 CACTTAGTGC
35247227 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35255156 original size:27 final size:27
Alignment explanation
Indices: 35255126--35255301 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
35255116 ATATTGAGTC
* * * *
35255126 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
35255153 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35255180 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
35255208 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
35255235 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
35255262 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
35255289 CGCACACTTAGTG
1 CGCACACTTAGTG
35255302 TGTACAATTT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:35255265 original size:82 final size:81
Alignment explanation
Indices: 35255147--35255301 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
35255137 TGCTATATAA
* *
35255147 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
35255212 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35255229 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
35255293 CACTTAGTG
65 CACTTAGTG
35255302 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35259324 original size:46 final size:46
Alignment explanation
Indices: 35259257--35259385 Score: 152
Period size: 46 Copynumber: 2.8 Consensus size: 46
35259247 AATCTCACCT
* * * *
35259257 ATAATGAACTCGGAATGCAACTCAACGAGCTCGGGTG-TTCGCATCC
1 ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTT-GCATAC
* * *
35259303 ATAATGAACTCGGAACACAACTCAATGAGTTTGGATGCTTGCATAC
1 ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCATAC
* *
35259349 ATAGGTGAACTCGGAACGTAACTCAACGAGTTCGGAT
1 ATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGAT
35259386 CCCTCATAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 39 0.57
47 30 0.43
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (46 bp):
ATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTGCATAC
Found at i:35262040 original size:45 final size:45
Alignment explanation
Indices: 35261942--35262100 Score: 184
Period size: 45 Copynumber: 3.6 Consensus size: 45
35261932 CCGGTATTTT
* * * *
35261942 GCCTGCTAGGCTC-GAGGCCCG-ATA-TCATTTCACTGGCACTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGACATTATA
*
35261985 GCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGACATTATA
1 GCCTGCTAGGCTC-AAAGGCCCGAATAGTATTTCACCGACATTATA
* *
35262030 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCA-CTAGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGA-CATTATA
*
35262075 GCCTGCTAGGCACAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATA
35262101 CACATCACCG
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 13 0.13
44 10 0.10
45 77 0.76
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGACATTATA
Found at i:35262130 original size:43 final size:43
Alignment explanation
Indices: 35262074--35262255 Score: 267
Period size: 43 Copynumber: 4.2 Consensus size: 43
35262064 CTAGCATCAT
35262074 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
* * *
35262117 AGCCTGCTAGGCACGAAGGCTCGAATACACATCACCAGCAA-GA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACC-GGAACGA
* * * * *
35262160 AGCCTACTAGGCACGAAGGCCTGAATACACATCACCAGCACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
*
35262203 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
35262246 AGCCTGCTAG
1 AGCCTGCTAG
35262256 ATTTAACCCG
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 120 0.97
44 3 0.02
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.11
Consensus pattern (43 bp):
AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGAACGA
Found at i:35262186 original size:86 final size:86
Alignment explanation
Indices: 35262029--35262255 Score: 292
Period size: 86 Copynumber: 2.6 Consensus size: 86
35262019 CCGACATTAT
* * ** * **
35262029 AGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACTAGCATCATAGCCTGCTAGGCACAAAGGC
1 AGCCTGCTAGGCACAAAGGCCCGAATA-CACATCACCAGCAAGA-AGCCTGCTAGGCACAAAGGC
*
35262094 CCGAATACACATCACCGGAACGA
64 CCGAATACACATCACCAGAACGA
* * * * *
35262117 AGCCTGCTAGGCACGAAGGCTCGAATACACATCACCAGCAAGAAGCCTACTAGGCACGAAGGCCT
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAGGCACAAAGGCCC
*
35262182 GAATACACATCACCAGCACGA
66 GAATACACATCACCAGAACGA
* *
35262203 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAG
35262256 ATTTAACCCG
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
86 86 0.72
87 10 0.08
88 24 0.20
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.14
Consensus pattern (86 bp):
AGCCTGCTAGGCACAAAGGCCCGAATACACATCACCAGCAAGAAGCCTGCTAGGCACAAAGGCCC
GAATACACATCACCAGAACGA
Found at i:35275263 original size:22 final size:22
Alignment explanation
Indices: 35275235--35275281 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
35275225 TTTGGAATGT
35275235 CATCTCTAAATAAATACCAAAA
1 CATCTCTAAATAAATACCAAAA
35275257 CATCTCTAAATAAATACCAAAA
1 CATCTCTAAATAAATACCAAAA
35275279 CAT
1 CAT
35275282 TTCACCAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (22 bp):
CATCTCTAAATAAATACCAAAA
Found at i:35277868 original size:15 final size:15
Alignment explanation
Indices: 35277848--35277878 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35277838 GCTAAATCGA
35277848 AACAGTGGTTTTGGG
1 AACAGTGGTTTTGGG
35277863 AACAGTGGTTTTGGG
1 AACAGTGGTTTTGGG
35277878 A
1 A
35277879 CCAAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.39, T:0.32
Consensus pattern (15 bp):
AACAGTGGTTTTGGG
Found at i:35282863 original size:46 final size:45
Alignment explanation
Indices: 35282810--35282979 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
35282800 TTGAGCATCT
35282810 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGATGCGAATGTCC
* * * *
35282856 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G--TCC
* *
35282903 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATGTCC
*
35282949 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35282980 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATGTCC
Found at i:35282963 original size:93 final size:93
Alignment explanation
Indices: 35282804--35282974 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
35282794 GGATGGTTGA
* * * *
35282804 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35282869 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
35282897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
35282962 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
35282975 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:35284361 original size:20 final size:20
Alignment explanation
Indices: 35284336--35284405 Score: 59
Period size: 20 Copynumber: 3.3 Consensus size: 20
35284326 CTTTTTCCTG
35284336 TACCAAAATTTATAAGTATA
1 TACCAAAATTTATAAGTATA
* * * * *
35284356 TACCAACCAATTCAACAAATTTC
1 TACCAA--AATT-TATAAGTATA
35284379 TAACCAAAATTTATAAGTATA
1 T-ACCAAAATTTATAAGTATA
35284400 TACCAA
1 TACCAA
35284406 CCAATTCAAC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
20 11 0.31
21 6 0.17
22 8 0.22
23 6 0.17
24 5 0.14
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (20 bp):
TACCAAAATTTATAAGTATA
Found at i:35284364 original size:24 final size:24
Alignment explanation
Indices: 35284337--35284409 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 24
35284327 TTTTTCCTGT
35284337 ACCAAAATTTATAAGTATATACCA
1 ACCAAAATTTATAAGTATATACCA
* * * *
35284361 ACC--AATTCA-ACA-AAT-TTCTA
1 ACCAAAATTTATA-AGTATATACCA
35284381 ACCAAAATTTATAAGTATATACCA
1 ACCAAAATTTATAAGTATATACCA
35284405 ACCAA
1 ACCAA
35284410 TTCAACAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 6 0.17
21 3 0.09
22 12 0.34
23 3 0.09
24 11 0.31
ACGTcount: A:0.49, C:0.21, G:0.03, T:0.27
Consensus pattern (24 bp):
ACCAAAATTTATAAGTATATACCA
Found at i:35284400 original size:44 final size:44
Alignment explanation
Indices: 35284337--35284426 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
35284327 TTTTTCCTGT
35284337 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
1 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
35284381 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
1 ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
35284425 AC
1 AC
35284427 ATTCAAAACA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (44 bp):
ACCAAAATTTATAAGTATATACCAACCAATTCAACAAATTTCTA
Found at i:35285025 original size:33 final size:33
Alignment explanation
Indices: 35284986--35285077 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
35284976 GAGGTGTACA
*
35284986 TTCCTTTCCAAGTGGTACACACAAAGTATATCT
1 TTCCTTTCCAAGTGGTACACACAAAGTATACCT
* *
35285019 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
1 TTCCTTTCCA-AGTGGTACACACAAAGTATACCT
**
35285052 AACCTTTCCAAGT-GTACACACAAAGT
1 TTCCTTTCCAAGTGGTACACACAAAGT
35285078 GTACATAACC
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
32 13 0.26
33 36 0.72
34 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.33
Consensus pattern (33 bp):
TTCCTTTCCAAGTGGTACACACAAAGTATACCT
Found at i:35285087 original size:32 final size:33
Alignment explanation
Indices: 35284988--35285101 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 33
35284978 GGTGTACATT
**
35284988 CCTTTCCAAGTGGTACACACAAAGTATATC-TTT
1 CCTTTCCAAGTGGTACACACAAAGTATA-CATAA
* * *
35285021 CCTTTTCATA-TGGTATACACAAAGTATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACATAA
*
35285054 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
*
35285086 CCATTT-CAAGTTGTAC
1 CC-TTTCCAAGTGGTAC
35285102 CATTTAGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
32 27 0.40
33 40 0.59
34 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACATAA
Found at i:35289773 original size:22 final size:22
Alignment explanation
Indices: 35289748--35289818 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
35289738 AGTTCATATT
35289748 GAACTCATATAATCTTGTAACA
1 GAACTCATATAATCTTGTAACA
* * * **
35289770 GAACT-ATGTAATAGTT-CATATT
1 GAACTCATATAAT-CTTGTA-ACA
35289792 GAACTCATATAATCTTGTAACA
1 GAACTCATATAATCTTGTAACA
35289814 GAACT
1 GAACT
35289819 ATGTCTGTTG
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
21 7 0.20
22 21 0.60
23 7 0.20
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (22 bp):
GAACTCATATAATCTTGTAACA
Found at i:35289783 original size:44 final size:44
Alignment explanation
Indices: 35289729--35289822 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
35289719 TCATGTAAAT
35289729 ACTA-GTAATAGTTCATATTGAACTCATATAATCTTGTAACAGA
1 ACTATGTAATAGTTCATATTGAACTCATATAATCTTGTAACAGA
35289772 ACTATGTAATAGTTCATATTGAACTCATATAATCTTGTAACAGA
1 ACTATGTAATAGTTCATATTGAACTCATATAATCTTGTAACAGA
35289816 ACTATGT
1 ACTATGT
35289823 CTGTTGAACC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 4 0.08
44 46 0.92
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (44 bp):
ACTATGTAATAGTTCATATTGAACTCATATAATCTTGTAACAGA
Found at i:35289964 original size:25 final size:25
Alignment explanation
Indices: 35289911--35290001 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
35289901 ATTCATGTAT
* * *
35289911 GCTCATATGAGCTATGAATC-AGTAT
1 GCTCATACGAGCTGTGAATCGAG-AA
* *
35289936 GCTC-TCACGAGCTGTGAATTGGGAA
1 GCTCAT-ACGAGCTGTGAATCGAGAA
**
35289961 GCTCATACGAGCTGCAAATCGAGAA
1 GCTCATACGAGCTGTGAATCGAGAA
35289986 GCTCATACGAGCTGTG
1 GCTCATACGAGCTGTG
35290002 GTGTGTTTGC
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
24 1 0.02
25 49 0.94
26 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGTGAATCGAGAA
Found at i:35296713 original size:27 final size:27
Alignment explanation
Indices: 35296683--35296859 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
35296673 ATATTGAGTC
* * *
35296683 CGCACACTCAGTTCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
35296710 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
35296737 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
35296765 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
35296792 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
35296818 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
35296845 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35296860 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 22 0.17
27 82 0.65
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:35296769 original size:55 final size:54
Alignment explanation
Indices: 35296683--35296859 Score: 196
Period size: 55 Copynumber: 3.3 Consensus size: 54
35296673 ATATTGAGTC
* * * * * *
35296683 CGCACACTCAGTTCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
35296737 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
35296792 CGCACACTTAGTGC-ATCAT-TTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
35296845 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35296860 GTACAATTTA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
53 39 0.38
54 22 0.21
55 42 0.41
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:35299051 original size:48 final size:48
Alignment explanation
Indices: 35298995--35299217 Score: 277
Period size: 48 Copynumber: 4.6 Consensus size: 48
35298985 TATGTGAGTC
* * *
35298995 AGTGTAAGATCATGTTTGGAACATGACATCAACATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
*
35299043 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
* * * * * * *
35299091 AGTGTAAGACCATATCTGGGACATGGCATCGGC-TTCAATATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATT-TATATGAGAGCT
* * * *
35299139 AGTGTAAGACCATGTTTGGTATATGGAATCGACGTTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
* *
35299187 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTTTGGAACATGGCATCG
35299218 GCATCTCACC
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 146 0.97
49 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCT
Found at i:35306003 original size:48 final size:48
Alignment explanation
Indices: 35305947--35306209 Score: 235
Period size: 48 Copynumber: 5.5 Consensus size: 48
35305937 CCAGTCTAAA
* **
35305947 ACCATGTTTGGAACATGACATCAACATTTATATGAGACCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
* ** * *
35305995 ACCATGTTTGGAACATGGCATCGGCCTCGATATGTGAGCC-AATGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGA-CCTAGTGTAAG
* ** * *
35306043 ACCATGTTTGGAACATGGCATCAGTGTTTATATGAAAGCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
* * * * *
35306091 ACCATGTCTGGGACATGGCATCGGCCTCGATATATGAG-CC-AGTGCAAG
1 ACCATGTTTGGAACATGGCATCGGCAT--TTATATGAGACCTAGTGTAAG
* * ** * *
35306139 ACCATGTTTGGAACATGACATTGGTGTTTATATGAAAGCTAGTGTAAG
1 ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
* * *
35306187 ACGATGTCTGGGACATGGCATCG
1 ACCATGTTTGGAACATGGCATCG
35306210 ACATCTTACC
Statistics
Matches: 168, Mismatches: 41, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
46 7 0.04
47 2 0.01
48 149 0.89
49 3 0.02
50 7 0.04
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
ACCATGTTTGGAACATGGCATCGGCATTTATATGAGACCTAGTGTAAG
Found at i:35306093 original size:96 final size:96
Alignment explanation
Indices: 35305929--35306209 Score: 418
Period size: 96 Copynumber: 2.9 Consensus size: 96
35305919 ATACTAGGGT
* * *** * *
35305929 TATGTGAGCCAGTCTAAAACCATGTTTGGAACATGACATCAACATTTATATGAGACCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
* *
35305994 GACCATGTTTGGAACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* *
35306025 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCAGTGTTTATATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
35306090 GACCATGTCTGGGACATGGCATCGGCCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * **
35306121 TATATGAGCCAGTGCAAGACCATGTTTGGAACATGACATTGGTGTTTATATGAAAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
*
35306186 GACGATGTCTGGGACATGGCATCG
66 GACCATGTCTGGGACATGGCATCG
35306210 ACATCTTACC
Statistics
Matches: 167, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 167 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCAGTGTTTATATGAAAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:35308421 original size:40 final size:40
Alignment explanation
Indices: 35308358--35308534 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
35308348 GGATTGATAA
35308358 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35308397 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * * *
35308438 -CGGGCCAAGTCCCGAAGGCAATTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
35308477 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
35308517 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
35308535 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 27 0.22
40 92 0.76
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:35316394 original size:37 final size:40
Alignment explanation
Indices: 35316320--35316491 Score: 206
Period size: 37 Copynumber: 4.6 Consensus size: 40
35316310 ATTTGGATTG
35316320 ATAACCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
35316358 ATATCCGGGCTAAGT-CC-AAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
35316395 ATAACC-GGC-AAGTCCCGAAGGCAATTGTGCGA-TTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
35316432 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
35316472 ATATCC-GGCTAA--CCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
35316492 TACTTGGTTG
Statistics
Matches: 119, Mismatches: 7, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
35 4 0.03
36 5 0.04
37 43 0.36
38 30 0.25
39 31 0.26
40 6 0.05
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:35328737 original size:37 final size:37
Alignment explanation
Indices: 35328678--35328786 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
35328668 AGCTCAGACG
* *
35328678 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
35328715 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
35328752 TAATCTCCACACGTAGTCATCGGGTCTTATCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
35328787 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:35329011 original size:58 final size:58
Alignment explanation
Indices: 35328935--35329044 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
35328925 CATCGCCTAC
*
35328935 ATATTTCACACTAGCCATTC-GACTTTACCACATATACATATCTCATATATATATATAT
1 ATATTTCACACTAGCCATTCAG-CTTTACCACATATACATATCTCATACATATATATAT
* *
35328993 ATATTTCACA-TTGACCATTCAGCTTTACCACATATACATTTCTCATACATAT
1 ATATTTCACACTAG-CCATTCAGCTTTACCACATATACATATCTCATACATAT
35329045 TTCACATTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
57 2 0.04
58 44 0.94
59 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.38
Consensus pattern (58 bp):
ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATATATAT
Found at i:35329109 original size:47 final size:47
Alignment explanation
Indices: 35329046--35329286 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
35329036 CATACATATT
* * * * *
35329046 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
35329093 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
35329140 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
35329187 TCACATTGGCCATTCGACCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * ***
35329234 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
35329281 TCACAT
1 TCACAT
35329287 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:35329214 original size:22 final size:22
Alignment explanation
Indices: 35329139--35329257 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
35329129 GCTCACATTC
*
35329139 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGACCTT
* *
35329161 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGACCTT
35329185 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCGACCTT
* *
35329208 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGACCTT
*
35329232 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGACCTT
35329255 ATC
1 ATC
35329258 TCATATATAC
Statistics
Matches: 73, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
22 22 0.30
23 16 0.22
24 16 0.22
25 19 0.26
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGACCTT
Found at i:35334545 original size:29 final size:29
Alignment explanation
Indices: 35334482--35334589 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
35334472 TTCACATACC
* ** *
35334482 TGTATCTGGCCCATTAAACCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
35334510 T-TCATATGGCCCATTAGGCCTAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
35334539 TGTATATGGCCCATTAGGCCCAAATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
35334568 TTTATATGGCCCATTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
35334590 GTCATATTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 15 0.22
29 50 0.75
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:35334549 original size:57 final size:58
Alignment explanation
Indices: 35334479--35334587 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
35334469 AATTTCACAT
*
35334479 ACCTGTATCTGGCCCATTAAACCC-AATCATATTCATATGGCCCATTAGGCCTAAATC
1 ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCCTAAATC
** *
35334536 ACCTGTATATGGCCCATTAGGCCCAAATCATATTTATATGGCCCATTAGGCC
1 ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCC
35334588 CAGTCATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 21 0.45
58 26 0.55
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAACCCAAATCATATTCATATGGCCCATTAGGCCTAAATC
Found at i:35334692 original size:18 final size:19
Alignment explanation
Indices: 35334669--35334704 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
35334659 ATGGGCACAA
35334669 TAGCCCA-TCGGGCCCATT
1 TAGCCCATTCGGGCCCATT
*
35334687 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCGGGCCCAT
35334705 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25
Consensus pattern (19 bp):
TAGCCCATTCGGGCCCATT
Found at i:35339084 original size:40 final size:40
Alignment explanation
Indices: 35338990--35339258 Score: 389
Period size: 40 Copynumber: 6.8 Consensus size: 40
35338980 GATGAAAACT
* * * * **
35338990 GGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
35339030 GGGC-AAGTCTCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
35339069 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
35339109 GCGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
35339149 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
35339189 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCC
* *
35339229 GGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
35339259 AGCTATATCC
Statistics
Matches: 208, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 31 0.15
40 175 0.84
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:35343360 original size:429 final size:421
Alignment explanation
Indices: 35342524--35343311 Score: 1063
Period size: 429 Copynumber: 1.8 Consensus size: 421
35342514 GAAGCCTGAA
* * *
35342524 TGTGACAGCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGATTTCGGGACCGCTAAACCGAGTAACCAAA
* *
35342589 TTATTTGAATATGATATTTATTGTCTAAAATATGTGATTATGAATGTGTGAAAGTTTTAAGCTTC
66 TTATTTGAACATGATATTTATTGTCT-AAATA---GATTA-GAATGTGTGAAAATTTTAAGCTTC
35342654 GATTTAGTAAATTGCATGTGAATTTAGTCAATAGGACTTATGTGTGACACTTTTGAAATGTGATA
126 GATTTAGTAAATTGCATGTGAATTTAGTCAATAGGACTTATGTGTGACACTTTTGAAATGTGATA
* * * * *
35342719 GGTTAATCTATAAGGATCTATTAGTGCATGTAATCATAGGGGTGGACTTGCATGTCAATTTCCCC
191 GATAAAACTATAAGGACCTATTAGTGCATGTAA-CAAAGGGGTGGACTTGCATGTCAATTTCCCC
*
35342784 CATTTAATTACTAGTGGCCGGCCGTGACAAAGGGTGATGGGCAAAACATGTCATAGACATGTTAT
255 C--TCAATTACTAGTGGCCGGCCGTGACAAAGGGTGATGGGCAAAACATGTCATAGACATGTTAT
* * *
35342849 GTTGGTGCATCATGGGAGAAACAACAAAATAAAAAGTTAGTAATAAAGAAATGGAAAAAGGAAAA
318 GTTGGTGCATCATGGGAGAAACAACAAAATAAAAAGTGAGCAATAAAGAAATAGAAAAAGGAAAA
35342914 TGATGAAAGAAAAAAAAAGGGATCATCATTCATGTTCTT
383 TGATGAAAGAAAAAAAAAGGGATCATCATTCATGTTCTT
** *
35342953 TGTGACACCCCTAATTTGACCCTAGTCGGAAAGCGATTTCGGGACTGCTAAACCGAGTAACCAAA
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGATTTCGGGACCGCTAAACCGAGTAACCAAA
35343018 TTATTTGAACATGATATTTATTGTCT-AA-A-A-TA-AATGTGTGAAAATTTTAAGCTTCGATTT
66 TTATTTGAACATGATATTTATTGTCTAAATAGATTAGAATGTGTGAAAATTTTAAGCTTCGATTT
* *
35343078 AGTAAATTTCATGTGAATTTAGTCAATAGGACTTATGTGTGACATTTTTGAAATGTGATAGATCA
131 AGTAAATTGCATGTGAATTTAGTCAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGAT-A
35343143 AAAC-ATAAGGACCTATTAGTGCATGTTGAA-AAAGGGG-GGACTTGCATGTCAATTTTCCCCC-
195 AAACTATAAGGACCTATTAGTGCATG-T-AACAAAGGGGTGGACTTGCATGTCAA-TTTCCCCCT
* *
35343204 CCATCTAGTAGTGGCCGGCCATGACATTAGGATGGACAAAGGGTGATGGGCAAAACATGTCATAG
257 CAAT-TACTAGTGGCCGG-C----C-----G-T-GACAAAGGGTGATGGGCAAAACATGTCATAG
* * *
35343269 ACATGTTCTGTTGGTGCGTCATGGGAGGAAACAATAAAATAAA
309 ACATGTTATGTTGGTGCATCATGGGA-GAAACAACAAAATAAA
35343312 GAGCATGGGC
Statistics
Matches: 320, Mismatches: 21, Indels: 35
0.85 0.06 0.09
Matches are distributed among these distances:
416 2 0.01
417 12 0.04
418 16 0.05
419 121 0.38
420 4 0.01
421 4 0.01
422 2 0.01
426 1 0.00
427 3 0.01
428 1 0.00
429 139 0.43
430 15 0.05
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (421 bp):
TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGATTTCGGGACCGCTAAACCGAGTAACCAAA
TTATTTGAACATGATATTTATTGTCTAAATAGATTAGAATGTGTGAAAATTTTAAGCTTCGATTT
AGTAAATTGCATGTGAATTTAGTCAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGATAA
AACTATAAGGACCTATTAGTGCATGTAACAAAGGGGTGGACTTGCATGTCAATTTCCCCCTCAAT
TACTAGTGGCCGGCCGTGACAAAGGGTGATGGGCAAAACATGTCATAGACATGTTATGTTGGTGC
ATCATGGGAGAAACAACAAAATAAAAAGTGAGCAATAAAGAAATAGAAAAAGGAAAATGATGAAA
GAAAAAAAAAGGGATCATCATTCATGTTCTT
Found at i:35345437 original size:47 final size:47
Alignment explanation
Indices: 35345379--35345773 Score: 646
Period size: 47 Copynumber: 8.4 Consensus size: 47
35345369 CAGCCAAGAC
*
35345379 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
35345426 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
35345473 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
35345520 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35345567 AGTGTATGTATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35345614 AGTGTATATATGTAATAAGGCCTAATGGACGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
35345661 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
35345708 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
35345755 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
35345774 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 324 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:35345948 original size:37 final size:37
Alignment explanation
Indices: 35345892--35345970 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
35345882 CCGAGCTCTA
* * *
35345892 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCAGGT
*
35345929 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
35345966 AAGAC
1 AAGAC
35345971 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:35348679 original size:40 final size:40
Alignment explanation
Indices: 35348585--35348809 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
35348575 TATTCGAATG
* * *
35348585 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * *
35348626 ATAACCGGACTAAGATCCGAAGGCATTCGTGCTAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
35348666 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
35348706 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
35348746 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
35348786 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
35348810 CTTGTGCAAG
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.81
41 29 0.18
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:35354805 original size:37 final size:37
Alignment explanation
Indices: 35354755--35354833 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
35354745 TTATTACGAA
* * *
35354755 GTCTTACCAGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
* *
35354792 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
35354829 GTCTT
1 GTCTT
35354834 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
Found at i:35355030 original size:47 final size:47
Alignment explanation
Indices: 35354952--35355174 Score: 331
Period size: 47 Copynumber: 4.7 Consensus size: 47
35354942 CCCTTCGGGA
* ** * * * *
35354952 CTTATCACATTTATACACTTTCACACCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35354999 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35355046 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35355093 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35355140 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
35355175 AGAATCCTAA
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.01
47 161 0.99
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35358636 original size:77 final size:77
Alignment explanation
Indices: 35358500--35358662 Score: 299
Period size: 77 Copynumber: 2.1 Consensus size: 77
35358490 CGGCCATGGT
* *
35358500 ATATCCATAAGTATGATTTATGCTTGTTATGTTACTCATGGTTAAAATGATTCGGCTATGCTTCA
1 ATATACATGAGTATGATTTATGCTTGTTATGTTACTCATGGTTAAAATGATTCGGCTATGCTTCA
35358565 TGTAAAAATAAA
66 TGTAAAAATAAA
*
35358577 ATATACATGAGTATGATTTATGCTTGTTATGTTACTCATGGTTAAAATGATTCGGCTATGCTTTA
1 ATATACATGAGTATGATTTATGCTTGTTATGTTACTCATGGTTAAAATGATTCGGCTATGCTTCA
35358642 TGTAAAAATAAA
66 TGTAAAAATAAA
35358654 ATATACATG
1 ATATACATG
35358663 TGAATTCGGA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 83 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (77 bp):
ATATACATGAGTATGATTTATGCTTGTTATGTTACTCATGGTTAAAATGATTCGGCTATGCTTCA
TGTAAAAATAAA
Found at i:35359644 original size:40 final size:40
Alignment explanation
Indices: 35359542--35359812 Score: 393
Period size: 40 Copynumber: 6.8 Consensus size: 40
35359532 TGGATGAAAA
* * * * **
35359542 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
35359582 CTGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
35359621 CCGGGCTCAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
35359661 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
35359701 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
35359741 CCAGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
35359781 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
35359813 AGCTATATCC
Statistics
Matches: 210, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 32 0.15
40 176 0.84
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:35365928 original size:15 final size:16
Alignment explanation
Indices: 35365910--35365939 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35365900 TAATTTAATA
35365910 TTATAT-CAATTAAAT
1 TTATATACAATTAAAT
35365925 TTATATACAATTAAA
1 TTATATACAATTAAA
35365940 GGAAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TTATATACAATTAAAT
Found at i:35367495 original size:13 final size:13
Alignment explanation
Indices: 35367479--35367513 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
35367469 TGCTGTGGAA
35367479 AAGTACTTTTAAG
1 AAGTACTTTTAAG
*
35367492 AAGTACTTTTGAG
1 AAGTACTTTTAAG
*
35367505 AAGTGCTTT
1 AAGTACTTT
35367514 AGAAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (13 bp):
AAGTACTTTTAAG
Found at i:35373119 original size:30 final size:30
Alignment explanation
Indices: 35373085--35373158 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
35373075 ACCTAAGGGT
35373085 AAAATGGTCATTTTGCAAAAGTCTAGGAGC
1 AAAATGGTCATTTTGCAAAAGTCTAGGAGC
* *
35373115 AAAATGTTCATTTTGCAAAAGTCTAGGGGC
1 AAAATGGTCATTTTGCAAAAGTCTAGGAGC
35373145 AAAATGGTCATTTT
1 AAAATGGTCATTTT
35373159 TCCCAATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (30 bp):
AAAATGGTCATTTTGCAAAAGTCTAGGAGC
Found at i:35376793 original size:15 final size:16
Alignment explanation
Indices: 35376773--35376804 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
35376763 ATAAATAATA
35376773 ATAT-AAAATTACATT
1 ATATAAAAATTACATT
35376788 ATATAAAAATTACATT
1 ATATAAAAATTACATT
35376804 A
1 A
35376805 AAAATCACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAAATTACATT
Found at i:35376940 original size:111 final size:109
Alignment explanation
Indices: 35376804--35377381 Score: 564
Period size: 116 Copynumber: 5.3 Consensus size: 109
35376794 AAATTACATT
* * * *
35376804 AAAAATCACAA-ATCAC-AAAACACTAAACTA-TAAACACTAACAATTTA-GAATCATAAATTAC
1 AAAAATCACAATA-CACTAATACACTAAACCACTAAACACTAACAATTTACTAATCTTAAATTAC
* * *
35376865 TAACACAAAATAACTATAAAATTATTTTTTTAAAATACATTACT-AA
65 T-A-ATAAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAA
*
35376911 ATAAA--A-AAT-CA-TAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAA
1 AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAA--T-T-T-A-CTAATCTTAA
35376971 ATTACTAATAAAATAGCTAT-AAA-T-TTTTTTT-AAATATATTACTAAA
60 ATTACTAATAAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAA
35377017 AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAA
1 AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAA--T-T-T-A-CTAATCTTAA
* *
35377082 ATTACTAATAAAATAGCTATAAAAATATATTTTTTAAATTATATTACTAAA
60 ATTACTAATAAAATAGCTATAAAATTAT-TTTTTTAAAATATATTACTAAA
*
35377133 AAAAATCACAATACACTAATACACAAAACCACTAAACACTAACAATTTATATAACCTAATCTTAA
1 AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAA--T-T-T-A-CTAATCTTAA
* *
35377198 ATTACAAATAAAATAGCTATAAAATTATTTTTTAGAAAATATATTACT-AA
60 ATTACTAATAAAATAGCTATAAAATTATTTTTT-TAAAATATATTACTAAA
* * *
35377248 AAAAATCACAATATACTAATACACTAAACTACTAAACACTAACAATTTA-T-A---T-AA--CCT
1 AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTACTAATCTTAAATTACT
* *
35377305 AAT--CA-A-CTATAAAATTATTTTTTTAAAAATATATTATTACTAA
66 AATAAAATAGCTATAAAATTATTTTTTT-AAAATATATTACTA--AA
35377348 AAAAATCACAATACACTAATACACTAAA-CACTAA
1 AAAAATCACAATACACTAATACACTAAACCACTAA
35377382 CAATTTGTAA
Statistics
Matches: 420, Mismatches: 25, Indels: 60
0.83 0.05 0.12
Matches are distributed among these distances:
97 29 0.07
98 1 0.00
99 6 0.01
100 29 0.07
101 4 0.01
103 16 0.04
104 16 0.04
105 12 0.03
106 14 0.03
107 7 0.02
108 6 0.01
109 15 0.04
110 4 0.01
111 83 0.20
112 4 0.01
113 2 0.00
114 1 0.00
115 55 0.13
116 116 0.28
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.31
Consensus pattern (109 bp):
AAAAATCACAATACACTAATACACTAAACCACTAAACACTAACAATTTACTAATCTTAAATTACT
AATAAAATAGCTATAAAATTATTTTTTTAAAATATATTACTAAA
Found at i:35377186 original size:227 final size:224
Alignment explanation
Indices: 35376852--35377309 Score: 692
Period size: 227 Copynumber: 2.0 Consensus size: 224
35376842 AACAATTTAG
* *
35376852 AATCATAAATTACTAACACAAAATAACTATAAAATTATTTTTTTAAAATACATTACTAAATAAAA
1 AATCATAAATTACTAACACAAAATAACTATAAAAATATTTTTTTAAAATACATTACTAAAAAAAA
* *
35376917 AATCATAATACACTAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAATAA
66 AATCATAATACACAAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACAAATAA
35376982 AATAGCTAT-AAATT-TTTTTT-AAATATATTACTAAAAAAAATCACAATACACTAATACACTAA
131 AATAGCTATAAAATTATTTTTTAAAATATATTACT-AAAAAAATCACAATACACTAATACACTAA
35377044 ACCACTAAACACTAACAATTTATATAACCT
195 ACCACTAAACACTAACAATTTATATAACCT
* * * * *
35377074 AATCTTAAATTACT-A-ATAAAATAGCTATAAAAATATATTTTTTAAATTATATTACTAAAAAAA
1 AATCATAAATTACTAACACAAAATAACTATAAAAATAT-TTTTTTAAAATACATTACT-AAAAAA
35377137 ATCACAATACACTAATACACAAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTA
64 A--A-AAT-CA-TAATACACAAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTA
*
35377202 CAAATAAAATAGCTATAAAATTATTTTTTAGAAAATATATTACTAAAAAAATCACAATATACTAA
124 CAAATAAAATAGCTATAAAATTATTTTTT--AAAATATATTACTAAAAAAATCACAATACACTAA
*
35377267 TACACTAAACTACTAAACACTAACAATTTATATAACCT
187 TACACTAAACCACTAAACACTAACAATTTATATAACCT
35377305 AATCA
1 AATCA
35377310 ACTATAAAAT
Statistics
Matches: 212, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
220 18 0.08
221 18 0.08
222 19 0.09
224 1 0.00
225 3 0.01
226 2 0.01
227 67 0.32
228 5 0.02
229 6 0.03
231 61 0.29
232 12 0.06
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (224 bp):
AATCATAAATTACTAACACAAAATAACTATAAAAATATTTTTTTAAAATACATTACTAAAAAAAA
AATCATAATACACAAAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACAAATAA
AATAGCTATAAAATTATTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACTAAA
CCACTAAACACTAACAATTTATATAACCT
Found at i:35377187 original size:116 final size:112
Alignment explanation
Indices: 35376852--35377308 Score: 667
Period size: 116 Copynumber: 4.0 Consensus size: 112
35376842 AACAATTTAG
* * * * *
35376852 AATCATAAATTACTAACACAAAATAACTATAAAATTATTTTTTTAAAATACATTACTAAATAAA-
1 AATCTTAAATTACT-A-ATAAAATAGCTATAAAA-T-TTTTTTTAAAATATATTACTAAAAAAAT
35376916 -A-AAT-CA-TAATACACTAAACCACTAAACACTAACAATTTATATAACCT
62 CACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
35376963 AATCTTAAATTACTAATAAAATAGCTAT-AAATTTTTTTT-AAATATATTACTAAAAAAAATCAC
1 AATCTTAAATTACTAATAAAATAGCTATAAAATTTTTTTTAAAATATATTACT-AAAAAAATCAC
35377026 AATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
65 AATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
*
35377074 AATCTTAAATTACTAATAAAATAGCTATAAAAATATATTTTTTAAATTATATTACTAAAAAAAAT
1 AATCTTAAATTACTAATAAAATAGCTAT-AAAAT-T-TTTTTTAAAATATATTACT-AAAAAAAT
*
35377139 CACAATACACTAATACACAAAACCACTAAACACTAACAATTTATATAACCT
62 CACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
*
35377190 AATCTTAAATTACAAATAAAATAGCTATAAAATTATTTTTTAGAAAATATATTACTAAAAAAATC
1 AATCTTAAATTACTAATAAAATAGCTATAAAATT-TTTTTT--AAAATATATTACTAAAAAAATC
* *
35377255 ACAATATACTAATACACTAAACTACTAAACACTAACAATTTATATAACCT
63 ACAATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
35377305 AATC
1 AATC
35377309 AACTATAAAA
Statistics
Matches: 321, Mismatches: 12, Indels: 22
0.90 0.03 0.06
Matches are distributed among these distances:
105 11 0.03
106 13 0.04
107 1 0.00
108 4 0.01
109 14 0.04
110 3 0.01
111 82 0.26
113 4 0.01
114 9 0.03
115 71 0.22
116 109 0.34
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.32
Consensus pattern (112 bp):
AATCTTAAATTACTAATAAAATAGCTATAAAATTTTTTTTAAAATATATTACTAAAAAAATCACA
ATACACTAATACACTAAACCACTAAACACTAACAATTTATATAACCT
Found at i:35377572 original size:3 final size:3
Alignment explanation
Indices: 35377566--35377606 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
35377556 CTTTTTTTTT
*
35377566 TTC TTC TTC TTC TTC TTC TTCC TTC TTC TTC TTC TCC TTC T
1 TTC TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC TTC TTC T
35377607 CCTTTCTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:35377592 original size:19 final size:19
Alignment explanation
Indices: 35377568--35377605 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
35377558 TTTTTTTTTT
*
35377568 CTTCTTCTTCTTCTTCTTC
1 CTTCTTCTTCTTCTCCTTC
35377587 CTTCTTCTTCTTCTCCTTC
1 CTTCTTCTTCTTCTCCTTC
35377606 TCCTTTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (19 bp):
CTTCTTCTTCTTCTCCTTC
Found at i:35377613 original size:19 final size:22
Alignment explanation
Indices: 35377566--35377610 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
35377556 CTTTTTTTTT
*
35377566 TTCTTCTTCTTCTTCTTCTTCC
1 TTCTTCTTCTTCTCCTTCTTCC
35377588 TTCTTCTTCTTCTCCTTC-TCC
1 TTCTTCTTCTTCTCCTTCTTCC
35377609 TT
1 TT
35377611 TCTCTCCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (22 bp):
TTCTTCTTCTTCTCCTTCTTCC
Found at i:35378422 original size:24 final size:24
Alignment explanation
Indices: 35378381--35378452 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
35378371 CCACGTGGCA
**
35378381 ATTAAATTTTTTTTAAAATAAAAAT
1 ATTAAA-TTTTTAAAAAATAAAAAT
* *
35378406 ATTAAATTTTTAAAAAATTATAAT
1 ATTAAATTTTTAAAAAATAAAAAT
* * *
35378430 ATTAAATATTTAAATATTAAAAA
1 ATTAAATTTTTAAAAAATAAAAA
35378453 ATACTATTGA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
24 32 0.84
25 6 0.16
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
ATTAAATTTTTAAAAAATAAAAAT
Found at i:35383890 original size:49 final size:49
Alignment explanation
Indices: 35383818--35383961 Score: 191
Period size: 49 Copynumber: 2.9 Consensus size: 49
35383808 GCCGAAGCTA
35383818 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * * *
35383867 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG-T
* *
35383917 TTTGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACC
1 TCT-GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
35383962 TCACAATAGA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
48 4 0.05
49 39 0.49
50 2 0.03
51 35 0.44
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:35386151 original size:15 final size:15
Alignment explanation
Indices: 35386095--35386159 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
35386085 TAAAGATAAC
*
35386095 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
35386109 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
35386124 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
35386139 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
35386154 AAGAAA
1 AAGAAA
35386160 ACCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:35389357 original size:51 final size:48
Alignment explanation
Indices: 35389174--35389360 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 48
35389164 GCCGAAGCTA
* * *
35389174 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA-AG
* * *
35389223 TCTGGTACACGTAGTAGCATGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-AAG
** ** *
35389273 TCTAATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAG
* *
35389321 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
35389361 TGCGACCTCA
Statistics
Matches: 113, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.02
49 37 0.33
50 39 0.35
51 34 0.30
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAG
Found at i:35389358 original size:101 final size:99
Alignment explanation
Indices: 35389185--35389371 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
35389175 CTGGTACGCA
* * *
35389185 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCATGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCATGCACTTA
*
35389250 GTACTACACACGTGACCTCACCATCTAATACATG
66 GTACTACACACGCGACCTCACCATCTAATACATG
* * * *
35389284 TAGTAGCCTGCACTTAGTACTACACACGTGATCAA-AGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCATGCAC
*
35389348 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
35389372 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 2 0.03
99 32 0.42
101 42 0.55
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCATGCACTTA
GTACTACACACGCGACCTCACCATCTAATACATG
Found at i:35394879 original size:16 final size:17
Alignment explanation
Indices: 35394858--35394896 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
35394848 ACTGTAACGC
35394858 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
35394874 CCCAAAAATCTCGAAAT
1 CCCAAAAATCCCGAAAT
35394891 CCCAAA
1 CCCAAA
35394897 CTTTCTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:35396434 original size:29 final size:29
Alignment explanation
Indices: 35396389--35396506 Score: 116
Period size: 29 Copynumber: 4.1 Consensus size: 29
35396379 GTGAGCATGT
*
35396389 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
35396417 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* ** *
35396446 ATAAGAATATGAACAGGGCC-AGATAGGCC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
35396475 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
35396503 ATAT
1 ATAT
35396507 CATGTATGTA
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
28 19 0.27
29 51 0.73
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:35403784 original size:47 final size:50
Alignment explanation
Indices: 35403700--35403982 Score: 201
Period size: 46 Copynumber: 6.0 Consensus size: 50
35403690 CAAACATAGG
* * * *
35403700 GTAT-AATGCCGATGCCATGCCCCATACATGGTTTTACACTGGCTCTCAC
1 GTATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC
* *
35403749 GT-T-AA-GTCC-ATGCCATATCCCAGACATGGTCTTACACTGACTCTCAC
1 GTATCAATG-CCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC
* *
35403796 GTATCTATGCCGATGCCATGTTCCAAACATGGTCTTACACTGA----CAC
1 GTATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC
* * *
35403842 --ATCATGTGGCCAATG-CATGTCCCAAACAT-GTCTTACACTGGCT-T-AC
1 GTATCA-AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC
* * * * *
35403888 ATCTCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCTC-C
1 GTATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCTCAC
* * * * *
35403935 -TCTCAATGCTGATGCCATGTCCCAAACATGCTCTTACAGTGGCTCTCA
1 GTATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCA
35403983 TAATGTGGCC
Statistics
Matches: 187, Mismatches: 28, Indels: 38
0.74 0.11 0.15
Matches are distributed among these distances:
44 14 0.07
45 14 0.07
46 53 0.28
47 51 0.27
48 21 0.11
49 5 0.03
50 29 0.16
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (50 bp):
GTATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAC
Found at i:35403906 original size:46 final size:45
Alignment explanation
Indices: 35403707--35404020 Score: 199
Period size: 46 Copynumber: 6.7 Consensus size: 45
35403697 AGGGTATAAT
* * * *
35403707 GCCGATGCCATGCCCCATACATGGTTTTACACTGGCTCTCA-CGTTAAG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATC--TGAG
* * * * *
35403755 TCC-ATGCCATATCCCAGACATGGTCTTACACTGACTCTCACGTATCT-AT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCT--C--ATCTGAG
* * * *
35403804 GCCGATGCCATGTTCCAAACATGGTCTTACACT-G-ACACATCATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATC-TGAG
*
35403850 GCCAATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATCT-GAG
* * * * *
35403896 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCCTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCT-GAG
* * * *
35403942 GCTGATGCCATGTCCCAAACATGCTCTTACAGTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAAACATG-TCTTACACTGGCTCTCAT-CTGAG
*
35403990 GCCGATGCATGTCCCAAACATATCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
35404021 AGCACACAAA
Statistics
Matches: 211, Mismatches: 39, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
44 13 0.06
45 16 0.08
46 65 0.31
47 59 0.28
48 24 0.11
49 5 0.02
50 27 0.13
51 1 0.00
52 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCATCTGAG
Found at i:35403998 original size:140 final size:141
Alignment explanation
Indices: 35403766--35404020 Score: 356
Period size: 140 Copynumber: 1.8 Consensus size: 141
35403756 CCATGCCATA
* * *
35403766 TCCCAGACATGGTCTTACACTGACTCTCACGTATCTATGCCGATGCCATGTTCCAAACATGGTCT
1 TCCCAGACATGGTCTTACACTGACTCTCACGTATCAATGCCGATGCCATGTCCCAAACATGCTCT
* *
35403831 TACACTGACACATCATGTGGCCAATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAG
66 TACACTGACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATCTCGAG
35403896 GCCGATGCATG
131 GCCGATGCATG
* *
35403907 TCCCAGACAT-GTCTTACACT-AGCTCTC-C-TCTCAATGCTGATGCCATGTCCCAAACATGCTC
1 TCCCAGACATGGTCTTACACTGA-CTCTCACGTATCAATGCCGATGCCATGTCCCAAACATGCTC
* * * *
35403968 TTACAGTGGCTCTCATAATGTGGCCGATGCATGTCCCAAACATATCTTACACT
65 TTACACT-G-ACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACT
35404021 AGCACACAAA
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
138 34 0.34
139 3 0.03
140 53 0.53
141 10 0.10
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (141 bp):
TCCCAGACATGGTCTTACACTGACTCTCACGTATCAATGCCGATGCCATGTCCCAAACATGCTCT
TACACTGACACATAATGTGGCCAATGCATGTCCCAAACATATCTTACACTGGCTTACATCTCGAG
GCCGATGCATG
Done.