Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 111 of 320
Found at i:35898795 original size:21 final size:21
Alignment explanation
Indices: 35898750--35898812 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
35898740 TTTGAACCAT
* *
35898750 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
35898772 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
35898793 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
35898813 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:35900383 original size:13 final size:13
Alignment explanation
Indices: 35900365--35900389 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35900355 TAACCTACAA
35900365 AATTAAATAACAT
1 AATTAAATAACAT
35900378 AATTAAATAACA
1 AATTAAATAACA
35900390 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:35902856 original size:20 final size:20
Alignment explanation
Indices: 35902810--35902856 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
35902800 AGCTTGTTTC
*
35902810 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
35902830 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
35902850 CAGCTCA
1 CAGCTCA
35902857 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:35905023 original size:20 final size:21
Alignment explanation
Indices: 35904969--35905024 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
35904959 AAAAAGGAAT
* *
35904969 GAGCTGAAATGAGCTAAATTC
1 GAGCTCAAATGAGCTAAATAC
*
35904990 GAGCTCAAACGAGCTAAA-AC
1 GAGCTCAAATGAGCTAAATAC
*
35905010 GAGCTCAAGTGAGCT
1 GAGCTCAAATGAGCT
35905025 GATGGGAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (21 bp):
GAGCTCAAATGAGCTAAATAC
Found at i:35914944 original size:42 final size:41
Alignment explanation
Indices: 35914893--35914996 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 41
35914883 CACTCGTTTC
* *
35914893 TTTTGTTTCGATTTCTTTTTC-ATCTTCTTTTTCATTCTCAAA
1 TTTTTTTTCGATTTCTTTTTCAATC-TCTTTTTCAATCTC-AA
*
35914935 TTTTTTTTCG-TTCTCTTTTTCAATCTCTTTTTCAATCTCAT
1 TTTTTTTTCGATT-TCTTTTTCAATCTCTTTTTCAATCTCAA
35914976 TTTCTTTTTC-ATTTTCTTTTT
1 TTT-TTTTTCGA-TTTCTTTTT
35914997 GCTTTTCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
41 6 0.11
42 43 0.80
43 5 0.09
ACGTcount: A:0.12, C:0.19, G:0.03, T:0.66
Consensus pattern (41 bp):
TTTTTTTTCGATTTCTTTTTCAATCTCTTTTTCAATCTCAA
Found at i:35914955 original size:12 final size:12
Alignment explanation
Indices: 35914946--35914979 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
35914936 TTTTTTTCGT
35914946 TCTCTTTTTCAA
1 TCTCTTTTTCAA
35914958 TCTCTTTTTCAA
1 TCTCTTTTTCAA
*
35914970 TCTCATTTTC
1 TCTCTTTTTC
35914980 TTTTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (12 bp):
TCTCTTTTTCAA
Found at i:35914996 original size:18 final size:18
Alignment explanation
Indices: 35914904--35915002 Score: 56
Period size: 18 Copynumber: 5.4 Consensus size: 18
35914894 TTTGTTTCGA
*
35914904 TTTCTTTTTCATCTTCTT
1 TTTCTTTTTCATTTTCTT
* * *
35914922 TTTCATTCTCAAATTT-TT
1 TTTCTTTTTC-ATTTTCTT
* * * **
35914940 TTTCGTTCTCTTTTTCAA
1 TTTCTTTTTCATTTTCTT
* * * *
35914958 TCTCTTTTTCAATCTCAT
1 TTTCTTTTTCATTTTCTT
35914976 TTTCTTTTTCATTTTCTT
1 TTTCTTTTTCATTTTCTT
35914994 TTTGCTTTT
1 TTT-CTTTT
35915003 CAAAGGCTTT
Statistics
Matches: 58, Mismatches: 20, Indels: 5
0.70 0.24 0.06
Matches are distributed among these distances:
17 3 0.05
18 47 0.81
19 8 0.14
ACGTcount: A:0.11, C:0.20, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTCTTTTTCATTTTCTT
Found at i:35915003 original size:12 final size:12
Alignment explanation
Indices: 35914972--35914996 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35914962 TTTTTCAATC
35914972 TCATTTTCTTTT
1 TCATTTTCTTTT
35914984 TCATTTTCTTTT
1 TCATTTTCTTTT
35914996 T
1 T
35914997 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:35915075 original size:5 final size:5
Alignment explanation
Indices: 35915065--35915121 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
35915055 CTCTTGCCTC
*
35915065 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
35915112 TCTTT TCTTT
1 TCTTT TCTTT
35915122 ATTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:35915105 original size:15 final size:14
Alignment explanation
Indices: 35915065--35915121 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
35915055 CTCTTGCCTC
*
35915065 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
35915080 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
35915095 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
35915112 TCTTTTCTTT
1 TCTTTTCTTT
35915122 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:35915131 original size:21 final size:20
Alignment explanation
Indices: 35915063--35915132 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
35915053 GCCTCTTGCC
35915063 TCTCTTTTCTTTTTATTTCATTT
1 TCTCTTTTC-TTTT-TTT-ATTT
**
35915086 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
35915106 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
35915126 TCTCTTT
1 TCTCTTT
35915133 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 9 0.23
22 7 0.18
23 3 0.08
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.76
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:35916555 original size:20 final size:20
Alignment explanation
Indices: 35916530--35916584 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
35916520 TGTGGTTCAA
* *
35916530 CTCATTCGAGCTGAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
* *
35916550 CTCATTTGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
35916570 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
35916585 TTTAACTCGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:35919813 original size:30 final size:30
Alignment explanation
Indices: 35919779--35919875 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35919769 TAAACTAAAA
* *
35919779 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
35919809 TGAGCTGAGATTAATCTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
35919839 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
35919869 TGAGCTA
1 TGAGCTA
35919876 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:35921454 original size:21 final size:21
Alignment explanation
Indices: 35921428--35921471 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
35921418 TCCTTTTGAA
*
35921428 CCATACCATTTCGTACCAATT
1 CCATACCATTTCGAACCAATT
* *
35921449 CCATACTATTTTGAACCAATT
1 CCATACCATTTCGAACCAATT
35921470 CC
1 CC
35921472 CAAATACCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.32, G:0.05, T:0.34
Consensus pattern (21 bp):
CCATACCATTTCGAACCAATT
Found at i:35923580 original size:12 final size:12
Alignment explanation
Indices: 35923565--35923598 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
35923555 TTCTTTTCGT
35923565 TCTCTTTTTCAA
1 TCTCTTTTTCAA
35923577 TCTCTTTTTCAA
1 TCTCTTTTTCAA
*
35923589 TCTCATTTTC
1 TCTCTTTTTC
35923599 TTTTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (12 bp):
TCTCTTTTTCAA
Found at i:35923604 original size:42 final size:42
Alignment explanation
Indices: 35923517--35923615 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
35923507 GTTTCTTTTG
*
35923517 TTTCAATT-TCTTTTTCATCTTCTTTTTCATTCTCAAATTTCT
1 TTTC-ATTCTCTTTTTCATCTTCTTTTTCAATCTCAAATTTCT
* *
35923559 TTTCGTTCTCTTTTTCAATC-TCTTTTTCAATCTC-ATTTTCTT
1 TTTCATTCTCTTTTTC-ATCTTCTTTTTCAATCTCAAATTTC-T
*
35923601 TTTCATTTTCTTTTT
1 TTTCATTCTCTTTTT
35923616 GCTTTTCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 7 0.14
42 39 0.80
43 3 0.06
ACGTcount: A:0.13, C:0.21, G:0.01, T:0.65
Consensus pattern (42 bp):
TTTCATTCTCTTTTTCATCTTCTTTTTCAATCTCAAATTTCT
Found at i:35923615 original size:18 final size:18
Alignment explanation
Indices: 35923517--35923621 Score: 59
Period size: 18 Copynumber: 5.8 Consensus size: 18
35923507 GTTTCTTTTG
*
35923517 TTTCAATTTCTTTTTCAT
1 TTTCATTTTCTTTTTCAT
* * * * *
35923535 CTTCTTTTTCATTCTCAAA
1 TTTCATTTTCTTTTTC-AT
* * *
35923554 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCTTTTTCAT
* * *
35923571 TTTCAATCTCTTTTTCAA
1 TTTCATTTTCTTTTTCAT
*
35923589 TCTCATTTTCTTTTTCAT
1 TTTCATTTTCTTTTTCAT
*
35923607 TTTCTTTTTGCTTTT
1 TTTCATTTT-CTTTT
35923622 CAAAGGCTTT
Statistics
Matches: 62, Mismatches: 22, Indels: 5
0.70 0.25 0.06
Matches are distributed among these distances:
17 4 0.06
18 49 0.79
19 9 0.15
ACGTcount: A:0.12, C:0.21, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTCATTTTCTTTTTCAT
Found at i:35923622 original size:12 final size:12
Alignment explanation
Indices: 35923591--35923615 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35923581 TTTTTCAATC
35923591 TCATTTTCTTTT
1 TCATTTTCTTTT
35923603 TCATTTTCTTTT
1 TCATTTTCTTTT
35923615 T
1 T
35923616 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:35923711 original size:15 final size:14
Alignment explanation
Indices: 35923691--35923753 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 14
35923681 CTCTTGCCTC
35923691 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
35923706 TCTTTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
35923721 TCTTTTGCTTTTTCTT
1 TCTTTT-CTTTTT-TT
*
35923737 T-TCTTTCTTTATTT
1 TCT-TTTCTTTTTTT
35923751 TCT
1 TCT
35923754 ATTTACAGGA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 7 0.17
15 18 0.45
16 15 0.38
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:35923744 original size:21 final size:21
Alignment explanation
Indices: 35923691--35923746 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
35923681 CTCTTGCCTC
*
35923691 TCTTTTCTTT-TTATTTCTTTT
1 TCTTTTCTTTCTT-TTGCTTTT
35923712 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCT-TTCTTTTGCTTTT
35923733 TCTTTTCTTTCTTT
1 TCTTTTCTTTCTTT
35923747 ATTTTCTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 1 0.03
21 27 0.87
22 3 0.10
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (21 bp):
TCTTTTCTTTCTTTTGCTTTT
Found at i:35926826 original size:12 final size:13
Alignment explanation
Indices: 35926809--35926883 Score: 80
Period size: 13 Copynumber: 5.5 Consensus size: 13
35926799 TTGGAGTAAC
35926809 AAAAAAAA-TCAA
1 AAAAAAAATTCAA
35926821 AAAAAAAATTCGAA
1 AAAAAAAATTC-AA
*
35926835 AAAAAAAATTGATTGA
1 AAAAAAAATTCA---A
35926851 AAAAAAAATTCAA
1 AAAAAAAATTCAA
* *
35926864 AAAAAAAAGTGAA
1 AAAAAAAATTCAA
35926877 AAAAAAA
1 AAAAAAA
35926884 TCGAGCAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.15
13 22 0.41
14 12 0.22
16 12 0.22
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:35926828 original size:14 final size:14
Alignment explanation
Indices: 35926809--35926871 Score: 67
Period size: 14 Copynumber: 4.5 Consensus size: 14
35926799 TTGGAGTAAC
35926809 AAAAAAAA-TC-AA
1 AAAAAAAATTCAAA
*
35926821 AAAAAAAATTCGAA
1 AAAAAAAATTCAAA
* *
35926835 AAAAAAAATTGATTGA
1 AAAAAAAATTCA--AA
35926851 AAAAAAAATTCAAA
1 AAAAAAAATTCAAA
35926865 AAAAAAA
1 AAAAAAA
35926872 GTGAAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
12 8 0.19
13 2 0.05
14 20 0.48
16 12 0.29
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (14 bp):
AAAAAAAATTCAAA
Found at i:35926896 original size:25 final size:25
Alignment explanation
Indices: 35926820--35926884 Score: 85
Period size: 25 Copynumber: 2.4 Consensus size: 25
35926810 AAAAAAATCA
35926820 AAAAAAAAATTCGAAAAAAAAAATTGATTG
1 AAAAAAAAATTC-AAAAAAAAAA--G--TG
35926850 AAAAAAAAATTCAAAAAAAAAAGTG
1 AAAAAAAAATTCAAAAAAAAAAGTG
35926875 AAAAAAAAAT
1 AAAAAAAAAT
35926885 CGAGCAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.34
27 1 0.03
29 10 0.29
30 12 0.34
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (25 bp):
AAAAAAAAATTCAAAAAAAAAAGTG
Found at i:35926896 original size:42 final size:42
Alignment explanation
Indices: 35926809--35926900 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 42
35926799 TTGGAGTAAC
* * **
35926809 AAAAAAAATCAAAAAAAAAATTCGAAAAAAAAAATTGATTGAA
1 AAAAAAAATCAAAAAAAAAAGTCGAAAAAAAAAATCGA-CAAA
*
35926852 AAAAAAATTCAAAAAAAAAAGT-G-AAAAAAAAATCGAGCAAA
1 AAAAAAAATCAAAAAAAAAAGTCGAAAAAAAAAATCGA-CAAA
35926893 AAAAAAAA
1 AAAAAAAA
35926901 GGGTGACCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 21 0.50
42 1 0.02
43 20 0.48
ACGTcount: A:0.75, C:0.05, G:0.08, T:0.12
Consensus pattern (42 bp):
AAAAAAAATCAAAAAAAAAAGTCGAAAAAAAAAATCGACAAA
Found at i:35927995 original size:17 final size:18
Alignment explanation
Indices: 35927963--35927996 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35927953 AAAAGAGAGT
*
35927963 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
35927981 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
35927997 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:35932567 original size:10 final size:10
Alignment explanation
Indices: 35932552--35932589 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
35932542 TTAGGTTAAG
35932552 ATTGAGCTGA
1 ATTGAGCTGA
35932562 ATTGAGCTCGA
1 ATTGAGCT-GA
35932573 A-TGAGCTGA
1 ATTGAGCTGA
*
35932582 CTTGAGCT
1 ATTGAGCT
35932590 CGAGTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.80
11 3 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:35932577 original size:20 final size:20
Alignment explanation
Indices: 35932554--35932599 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
35932544 AGGTTAAGAT
35932554 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
35932574 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
35932594 TGAGCT
1 TGAGCT
35932600 AGAAACGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:35934201 original size:48 final size:48
Alignment explanation
Indices: 35934146--35934251 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
35934136 TTGTCTTTTC
*
35934146 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
35934194 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
35934242 TTTCTTTTTC
1 TTTCTTTTTC
35934252 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:35935342 original size:18 final size:19
Alignment explanation
Indices: 35935321--35935374 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
35935311 TCACTTCTTT
35935321 TTTTTCCTTTTTTTTTG-A
1 TTTTTCCTTTTTTTTTGAA
***
35935339 TTTTTTAATTTTTTTTGAA
1 TTTTTCCTTTTTTTTTGAA
35935358 TTTCTTCTCTTTTTTTT
1 TTT-TTC-CTTTTTTTT
35935375 AAATCCAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 14 0.52
19 4 0.15
20 2 0.07
21 7 0.26
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.78
Consensus pattern (19 bp):
TTTTTCCTTTTTTTTTGAA
Found at i:35935342 original size:19 final size:20
Alignment explanation
Indices: 35935320--35935374 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
35935310 GTCACTTCTT
35935320 TTTTTTCCTTTTTTTTTG-A
1 TTTTTTCCTTTTTTTTTGAA
**
35935339 TTTTTT-AATTTTTTTTGAA
1 TTTTTTCCTTTTTTTTTGAA
*
35935358 TTTCTTCTCTTTTTTTT
1 TTTTTTC-CTTTTTTTT
35935375 AAATCCAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
18 9 0.32
19 12 0.43
21 7 0.25
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.78
Consensus pattern (20 bp):
TTTTTTCCTTTTTTTTTGAA
Found at i:35936854 original size:10 final size:10
Alignment explanation
Indices: 35936839--35936876 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
35936829 TTAGGTTAAG
35936839 ATTGAGCTGA
1 ATTGAGCTGA
35936849 ATTGAGCTCGA
1 ATTGAGCT-GA
35936860 A-TGAGCTGA
1 ATTGAGCTGA
*
35936869 CTTGAGCT
1 ATTGAGCT
35936877 CGAGTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.80
11 3 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:35936864 original size:20 final size:20
Alignment explanation
Indices: 35936841--35936886 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
35936831 AGGTTAAGAT
35936841 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
35936861 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
35936881 TGAGCT
1 TGAGCT
35936887 AGAAACGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:35940887 original size:30 final size:30
Alignment explanation
Indices: 35940853--35940949 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
35940843 TAAACTAAAA
*
35940853 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTTGTGAGCTAAAGT
* * * ** * *
35940883 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTTGTGAGCTAAAGT
* *
35940913 TGAGCTAAGGTTTAGCTTGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTTGTGAGCT-AAAGT
35940943 TGAGCTA
1 TGAGCTA
35940950 GGCGTGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
30 46 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTTGTGAGCTAAAGT
Found at i:35941417 original size:26 final size:26
Alignment explanation
Indices: 35941364--35941418 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
35941354 TTAGTATGTT
*
35941364 TTTTAATGTGTCTAATTAGGATATAA
1 TTTTAATGTGTCTAATTAGGACATAA
*
35941390 TTTTAATGTGTCTAGTTTAGGACA-AA
1 TTTTAATGTGTCTA-ATTAGGACATAA
35941416 TTT
1 TTT
35941419 ATTAGCTGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.47
Consensus pattern (26 bp):
TTTTAATGTGTCTAATTAGGACATAA
Found at i:35943398 original size:22 final size:22
Alignment explanation
Indices: 35943368--35943411 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
35943358 TTTGGTATTT
35943368 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
35943390 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
35943412 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:35947631 original size:17 final size:17
Alignment explanation
Indices: 35947606--35947660 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
35947596 TCTCTTTTCA
*
35947606 TTCTCTTTTTTTGAATT
1 TTCTTTTTTTTTGAATT
* *
35947623 TTCTTTTTTTTTTCATTT
1 TTC-TTTTTTTTTGAATT
* *
35947641 TTCTTTTCTTTTGTATT
1 TTCTTTTTTTTTGAATT
35947658 TTC
1 TTC
35947661 GCTCTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 16 0.53
18 14 0.47
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (17 bp):
TTCTTTTTTTTTGAATT
Found at i:35947634 original size:18 final size:18
Alignment explanation
Indices: 35947611--35947652 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
35947601 TTTCATTCTC
*
35947611 TTTTTTTGAATTTTCTTT
1 TTTTTTTCAATTTTCTTT
*
35947629 TTTTTTTCATTTTTCTTT
1 TTTTTTTCAATTTTCTTT
35947647 TCTTTT
1 T-TTTT
35947653 GTATTTTCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.07, C:0.10, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTTTTCAATTTTCTTT
Found at i:35950204 original size:22 final size:22
Alignment explanation
Indices: 35950174--35950217 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
35950164 TTTGGTATTT
35950174 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
35950196 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
35950218 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:35953903 original size:29 final size:30
Alignment explanation
Indices: 35953870--35953927 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
35953860 GATTCAAAGA
*
35953870 TGGG-TTTATGGATATGAAGTTTATGTAGT
1 TGGGTTTTATGGATATAAAGTTTATGTAGT
*
35953899 TGGGTTTTATGGATATAAAGTTTTTGTAG
1 TGGGTTTTATGGATATAAAGTTTATGTAG
35953928 GTTTGGTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (30 bp):
TGGGTTTTATGGATATAAAGTTTATGTAGT
Found at i:35964559 original size:14 final size:15
Alignment explanation
Indices: 35964540--35964572 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
35964530 ATGTTTTGTT
35964540 TTTATG-TAATGTGA
1 TTTATGTTAATGTGA
*
35964554 TTTATGTTGATGTGA
1 TTTATGTTAATGTGA
35964569 TTTA
1 TTTA
35964573 CTTGTATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATGTTAATGTGA
Found at i:35968927 original size:25 final size:24
Alignment explanation
Indices: 35968893--35968939 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
35968883 TAAAGAAATG
*
35968893 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAAAAAAATGAT
*
35968918 GAAAACAAAAGAAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAAATG
35968940 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAAAAAAAAGAAAAAAAAATGAT
Found at i:35970314 original size:79 final size:81
Alignment explanation
Indices: 35970178--35970360 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
35970168 TCGAATGATG
* *
35970178 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
35970242 TGTGTGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
35970257 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
35970319 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
35970337 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
35970361 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:35970376 original size:40 final size:40
Alignment explanation
Indices: 35970179--35970362 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
35970169 CGAATGATGT
* * * *
35970179 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
35970219 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
35970259 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35970297 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35970338 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35970363 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35970384 original size:79 final size:79
Alignment explanation
Indices: 35970231--35970395 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
35970221 GGACTAAGAT
* * **
35970231 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
35970296 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
35970310 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
35970373 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35970389 CCGAAGG
1 CCGAAGG
35970396 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35972120 original size:20 final size:20
Alignment explanation
Indices: 35972081--35972120 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
35972071 TGAATAACCA
* *
35972081 ATTTGGTATGTTTCAATGTG
1 ATTTGGCATGTGTCAATGTG
*
35972101 ATTTGGCATGTGTCATTGTG
1 ATTTGGCATGTGTCAATGTG
35972121 GTAAGTTTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.28, T:0.47
Consensus pattern (20 bp):
ATTTGGCATGTGTCAATGTG
Found at i:35975205 original size:49 final size:51
Alignment explanation
Indices: 35975075--35975220 Score: 224
Period size: 52 Copynumber: 2.9 Consensus size: 51
35975065 CTTGTAGTCA
* * *
35975075 AAGCTACCTTCTTCACAAAGTGGCCTTAACATAGTGTCACACTTGTGACCG
1 AAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTGCCACACTTGTGACCG
*
35975126 AAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGACC-
1 AAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTGCCACACTTGTGACCG
*
35975177 AAGCTATC-TCTTCTCAAAGTGGCCTTCACATAGTGCCACACTTG
1 AAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTGCCACACTTG
35975221 AGTCACTAGT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
49 34 0.39
51 15 0.17
52 39 0.44
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (51 bp):
AAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTGCCACACTTGTGACCG
Found at i:35977979 original size:20 final size:20
Alignment explanation
Indices: 35977942--35977987 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
35977932 TAGGGACTAA
* *
35977942 AATGAAAAGTTGTAAAATTT
1 AATGAAAAATTCTAAAATTT
*
35977962 AATGAAAAATTCTTAAATTT
1 AATGAAAAATTCTAAAATTT
*
35977982 TATGAA
1 AATGAA
35977988 TATATGTGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (20 bp):
AATGAAAAATTCTAAAATTT
Found at i:35984556 original size:15 final size:16
Alignment explanation
Indices: 35984536--35984565 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
35984526 TTGTAACGCC
35984536 CCAAAA-TCCCGAAAA
1 CCAAAAGTCCCGAAAA
35984551 CCAAAAGTCCCGAAA
1 CCAAAAGTCCCGAAA
35984566 TCTTGAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.33, G:0.10, T:0.07
Consensus pattern (16 bp):
CCAAAAGTCCCGAAAA
Found at i:35986077 original size:15 final size:15
Alignment explanation
Indices: 35986041--35986071 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
35986031 TATCCTCAAC
*
35986041 AGATTCTGTCTCAGT
1 AGATTCTATCTCAGT
35986056 AGATTCTATCTCAGT
1 AGATTCTATCTCAGT
35986071 A
1 A
35986072 TTTTCTTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (15 bp):
AGATTCTATCTCAGT
Found at i:35989113 original size:20 final size:21
Alignment explanation
Indices: 35989088--35989127 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35989078 CTCTTGAAAC
35989088 AGGGC-ACACACCCGTGTGGA
1 AGGGCAACACACCCGTGTGGA
*
35989108 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCGTGTGG
35989128 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:35990379 original size:49 final size:47
Alignment explanation
Indices: 35990258--35990435 Score: 180
Period size: 49 Copynumber: 3.7 Consensus size: 47
35990248 GGTATAATGT
* * * *
35990258 CGATGCCATTTCCCAGACATGGTCTTACACTGGCTTATCCA-TCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGC-TATCAATTCAAGC
* *
35990305 CGATGCCATGTCTCAAACATGGTCTTACACTGGCTATCGAATTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATC-AATTC-AAGC
* * * *
35990354 CGACGCCATGTCCCAAACATAGTCTTACACTAGCTCTCACATATCCACA-C
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCA-AT-T-CA-AGC
*
35990404 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAAACATGGTCTTACACTG
35990436 ACACATCTCG
Statistics
Matches: 108, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
46 4 0.04
47 32 0.30
48 3 0.03
49 37 0.34
50 31 0.29
51 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCAATTCAAGC
Found at i:35990514 original size:47 final size:44
Alignment explanation
Indices: 35990360--35990575 Score: 150
Period size: 47 Copynumber: 4.6 Consensus size: 44
35990350 AGGCCGACGC
* * ** *
35990360 CATGTCCCAAACATAGTCTTACACTAGCTCTCACATATCCACACCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCT---ATCT-CATGCTGATG
* * *
35990409 CCATGTCCCAGACATGGTCTTACACT-GACAC-ATCTCGTAGCTGGTG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTATCTCAT-GCTGATG
*
35990455 CATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTC-TATCTC-ATGCTGATG
* *
35990501 CCATGTCCCAGACATGTTCTTACACTAGCTCTAATAAT-GTAGCTGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCTCT-AT-CTCAT-GCTGATG
* *
35990549 CATGTCCCAGAGATGTCCTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
35990576 GTACAAATAA
Statistics
Matches: 137, Mismatches: 18, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
44 12 0.09
45 16 0.12
46 28 0.20
47 32 0.23
48 22 0.16
49 2 0.01
50 25 0.18
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTATCTCATGCTGATG
Found at i:35990522 original size:92 final size:93
Alignment explanation
Indices: 35990405--35990575 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 93
35990395 TATCCACACC
* *
35990405 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTAGCTGGTGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACA-ATAAT-GTAGCTGATGCATGTCCCAGAC
*
35990467 ATGTCTTACACTAGCTCTTGTCTCAATGCT
64 ATGTCCTACACTAGCTCTTGTCTCAATGCT
* * *
35990497 GATGCCATGTCCCAGACATGTTCTTACACTAGCTCTAATAATGTAGCTGATGCATGTCCCAGAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-AATAATGTAGCTGATGCATGTCCCAGACA
35990562 TGTCCTACACTAGC
65 TGTCCTACACTAGC
35990576 GTACAAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 29 0.42
93 1 0.01
94 37 0.54
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACAATAATGTAGCTGATGCATGTCCCAGACAT
GTCCTACACTAGCTCTTGTCTCAATGCT
Found at i:35990783 original size:71 final size:71
Alignment explanation
Indices: 35990695--35990827 Score: 257
Period size: 71 Copynumber: 1.9 Consensus size: 71
35990685 GCAATTTATG
35990695 CTATATCAATTCAAACACATATAATAACAATGTAGTTGTATTATTTACAAACAACTTACCTCGAA
1 CTATATCAATTCAAACACATATAATAACAATGTAGTTGTATTATTTACAAACAACTTACCTCGAA
35990760 TTAGAA
66 TTAGAA
*
35990766 CTATATCAATTCAAACACATATAATAACAATGTAGTTGTATTATTTACATACAACTTACCTC
1 CTATATCAATTCAAACACATATAATAACAATGTAGTTGTATTATTTACAAACAACTTACCTC
35990828 AGATTACAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (71 bp):
CTATATCAATTCAAACACATATAATAACAATGTAGTTGTATTATTTACAAACAACTTACCTCGAA
TTAGAA
Found at i:35992249 original size:27 final size:27
Alignment explanation
Indices: 35992219--35992396 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
35992209 ATATTGAGCC
* * *
35992219 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
35992246 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
35992273 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
35992301 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
35992328 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
35992355 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
35992382 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35992397 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:35992312 original size:55 final size:55
Alignment explanation
Indices: 35992219--35992396 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
35992209 ATATTGAGCC
* * *
35992219 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
35992273 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
35992328 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
35992382 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35992397 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:35992358 original size:82 final size:81
Alignment explanation
Indices: 35992240--35992395 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
35992230 TGCTATACAA
* * *
35992240 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
35992305 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
35992322 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
35992386 CACTTAGTGC
65 CACTTAGTGC
35992396 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36000214 original size:27 final size:27
Alignment explanation
Indices: 36000184--36000361 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
36000174 ATATTGAGCC
* * *
36000184 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
36000211 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
36000238 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
36000266 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
36000293 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
36000320 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
36000347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36000362 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:36000277 original size:55 final size:55
Alignment explanation
Indices: 36000184--36000361 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
36000174 ATATTGAGCC
* * *
36000184 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
36000238 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
36000293 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
36000347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36000362 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:36000323 original size:82 final size:81
Alignment explanation
Indices: 36000205--36000360 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36000195 TGCTATACAA
* * *
36000205 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
36000270 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
36000287 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
36000351 CACTTAGTGC
65 CACTTAGTGC
36000361 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36013559 original size:27 final size:26
Alignment explanation
Indices: 36013517--36013618 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
36013507 GCTCAGTTAT
* *
36013517 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
36013544 CAGCTATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
36013570 CAGATATTTGTGGCATAGCCACCAAAAA
1 CAGATA-TTGTGGCAGAGCCACC-AGAA
* * *
36013598 TAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
36013619 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 50 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:36013805 original size:22 final size:22
Alignment explanation
Indices: 36013777--36013841 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
36013767 GCAAATACGT
*
36013777 TTGGCACATAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
36013799 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
36013821 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
36013842 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:36014298 original size:27 final size:27
Alignment explanation
Indices: 36014268--36014409 Score: 185
Period size: 27 Copynumber: 5.3 Consensus size: 27
36014258 GGGGTAAAAT
* * * * *
36014268 GGTAATTTTGCCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36014295 GGTAATTCCACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36014322 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36014349 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36014376 GGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
36014403 GGTAATT
1 GGTAATT
36014410 TCACAAATCA
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36014425 original size:54 final size:55
Alignment explanation
Indices: 36014286--36014464 Score: 163
Period size: 54 Copynumber: 3.3 Consensus size: 55
36014276 TGCCCCACAA
* * ** * * * *
36014286 GGGTATCTCGGTAA-TTCCACCCTACAAGGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTTCTACAATACAGGGGTATTTTGGTAATTCTACTCTACAG
** *
36014340 GGGTATTTCGGTAA-TTCTACCCTACAGGGGTATTTCGGTAATTCTACTCTACAG
1 GGGTATTTCGGTAATTTCTACAATACAGGGGTATTTTGGTAATTCTACTCTACAG
* *
36014394 GGGTATTTCGGTAATTTC-ACAA-ATCATGGGTATTTTGGTAATTTTA-T-TAACTAG
1 GGGTATTTCGGTAATTTCTACAATA-CAGGGGTATTTTGGTAATTCTACTCT-AC-AG
*
36014448 GGGTATTTTGGTAATTT
1 GGGTATTTCGGTAATTT
36014465 TATTGATCGA
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 4 0.04
54 100 0.93
55 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39
Consensus pattern (55 bp):
GGGTATTTCGGTAATTTCTACAATACAGGGGTATTTTGGTAATTCTACTCTACAG
Found at i:36014451 original size:27 final size:27
Alignment explanation
Indices: 36014365--36014492 Score: 111
Period size: 27 Copynumber: 4.7 Consensus size: 27
36014355 TCTACCCTAC
* *
36014365 AGGGGTATTTCGGTAATTCTACTCT-AC-
1 AGGGGTATTTTGGTAATTTTA-T-TAACT
* * * *
36014392 AGGGGTATTTCGGTAATTTCA-CAAAT
1 AGGGGTATTTTGGTAATTTTATTAACT
*
36014418 CATGGGTATTTTGGTAATTTTATTAACT
1 -AGGGGTATTTTGGTAATTTTATTAACT
*
36014446 AGGGGTATTTTGGTAATTTTATTGA-T
1 AGGGGTATTTTGGTAATTTTATTAACT
*
36014472 CGAGGGTATTTTGGTAATTTT
1 AG-GGGTATTTTGGTAATTTT
36014493 GTAAACCAAG
Statistics
Matches: 84, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 78 0.93
28 3 0.04
ACGTcount: A:0.24, C:0.09, G:0.23, T:0.44
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTATTAACT
Found at i:36014504 original size:27 final size:27
Alignment explanation
Indices: 36014394--36014949 Score: 342
Period size: 27 Copynumber: 20.6 Consensus size: 27
36014384 TACTCTACAG
* * *
36014394 GGGTATTTCGGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
36014420 TGGGTATTTTGGTAATTTTATTAA-CTA
1 -GGGTATTTTGGTAATTTTATAAATCGA
**
36014447 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
36014475 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
36014502 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** *
36014529 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * *
36014556 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
*** * **
36014583 GGGTAAAATGGTAATTCTAT-TTTAC-A
1 GGGTATTTTGGTAATTTTATAAAT-CGA
** *
36014609 GGAGTATTTCAGTAATTTTACAAATCGA
1 GG-GTATTTTGGTAATTTTATAAATCGA
** ***
36014637 GGGTATTTCAGTAATTTGGCAAA-CTGA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* *
36014664 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
36014691 GGATATTTGGGTAATTTTATAAATTG-
1 GGGTATTTTGGTAATTTTATAAATCGA
* * * *
36014717 GGAATACTTTGGTAATTTTACAAGTCGA
1 GG-GTATTTTGGTAATTTTATAAATCGA
** **
36014745 GGGTATTTCAGTAATTTTATAAATTAA
1 GGGTATTTTGGTAATTTTATAAATCGA
* **
36014772 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTTGGTAATTTTATAAATC-GA
* * *
36014799 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
** *
36014826 GGGTATTTCAGTAATTTTA-CAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
36014852 CGGTATTTCGGTAATTTTATAAA-CCA
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
36014878 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTATAAATCGA
* * *
36014905 GGGGTATTTTGATAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTATAAATCGA
36014932 GGGGTATTTTGGTAATTT
1 -GGGTATTTTGGTAATTT
36014950 GGTAAACTAA
Statistics
Matches: 432, Mismatches: 83, Indels: 28
0.80 0.15 0.05
Matches are distributed among these distances:
26 33 0.08
27 389 0.90
28 10 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:36014533 original size:108 final size:106
Alignment explanation
Indices: 36014367--36014949 Score: 417
Period size: 108 Copynumber: 5.4 Consensus size: 106
36014357 TACCCTACAG
* * ** * * *
36014367 GGGTATTTCGGTAATTCTACTCTACAGGGGTATTTCGGTAATTTCACAAATC-ATGGGTATTTTG
1 GGGTATTTTGGTAATTTTA-TAAACA-GGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTCG
* **
36014431 GTAATTTTATTAACTAGGGGTATTTTGGTAATTTTATTGATCGA
63 GTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
* * ** **
36014475 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAAT-G
1 GGGTATTTTGGTAATTTTATAAA-C-AGGGTATTTCAGTAATTTTACAAATCGAGGGT-ATTTCG
* * *** * *
36014539 GTAATTTTGTAAA-TCGAGGGTAAAATGATAATTCTATAAATCGA
63 GTAATTTTATAAACTAG-GGGTATTTTGGTAATTTTATAAATCGA
*** * ** *
36014583 GGGTAAAATGGTAATTCTATTTTACAGGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
1 GGGTATTTTGGTAATTTTA-TAAACAGG-GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
*** * *
36014648 TAATTTGGCAAACT-GAGGGTATTTCGGTAATTTTACAAATCGA
64 TAATTTTATAAACTAG-GGGTATTTTGGTAATTTTATAAATCGA
* * ** * * *
36014691 GGATATTTGGGTAATTTTATAAATTGGGAATACTTT-GGTAATTTTACAAGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTATAAACAGGG--TA-TTTCAGTAATTTTACAAATCGAGGGTATTTCG
* * * **
36014755 GTAATTTTATAAATTAAGGGTATTTTAGTAATTTTGCAAA-CTGA
63 GTAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATC-GA
* * * *
36014799 GGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC-AATCGACGGTATTTCGG
1 GGGTATTTTGGTAATTTTATAAA-C-AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGG
* * *
36014863 TAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAA-CTA
64 TAATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
* * **
36014905 GGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 -GGGTATTTTGGTAATTTTATAAA-CA-GGGTATTTCAGTAATTT
36014950 GGTAAACTAA
Statistics
Matches: 372, Mismatches: 84, Indels: 39
0.75 0.17 0.08
Matches are distributed among these distances:
106 3 0.01
107 104 0.28
108 252 0.68
109 10 0.03
110 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (106 bp):
GGGTATTTTGGTAATTTTATAAACAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTA
ATTTTATAAACTAGGGGTATTTTGGTAATTTTATAAATCGA
Found at i:36019828 original size:47 final size:47
Alignment explanation
Indices: 36019776--36020277 Score: 788
Period size: 47 Copynumber: 10.6 Consensus size: 47
36019766 GATAATTGTG
* *
36019776 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36019823 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36019870 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36019919 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36019966 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
36020013 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36020062 ATGTGAAAGTGTATATATATGTGATAAGGCTTGATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36020111 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36020158 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
36020205 ATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36020252 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
36020278 TCCCGAAGGG
Statistics
Matches: 423, Mismatches: 28, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 285 0.67
49 138 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36019883 original size:96 final size:96
Alignment explanation
Indices: 36019776--36020277 Score: 795
Period size: 96 Copynumber: 5.3 Consensus size: 96
36019766 GATAATTGTG
36019776 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
36019839 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
36019870 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
36019935 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36019966 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
36020029 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
36020062 ATGTGAAAGTGTATATATATGTGATAAGGCTTGATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
36020127 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
36020158 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
36020221 ATGTAACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
36020252 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
36020278 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 20, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 142 0.37
95 3 0.01
96 191 0.50
98 44 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:36019923 original size:143 final size:143
Alignment explanation
Indices: 36019776--36020277 Score: 810
Period size: 143 Copynumber: 3.5 Consensus size: 143
36019766 GATAATTGTG
*
36019776 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
36019841 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
36019906 GCCGATGTGATGA
131 GCCGATGTGATGA
*
36019919 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36019984 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
36020049 GCCGATGTGATGA
131 GCCGATGTGATGA
* *
36020062 ATGTGAAAGTGTATATATATGTGATAAGGCTTGATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
36020127 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
36020190 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* * * * * * * * * *
36020205 ATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
36020270 GTGATAAG
66 GTGATAAG
36020278 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
141 53 0.16
143 191 0.57
145 92 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:36030130 original size:50 final size:49
Alignment explanation
Indices: 36030074--36030198 Score: 155
Period size: 49 Copynumber: 2.5 Consensus size: 49
36030064 TGTGTCAGTA
*
36030074 TAAGACCATGTCTAGGACATGGCATCAGCAC-GGATAT-GCGAGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGC-CTGG-T-TGGCGAGAGCTAGTG
* * * * *
36030124 TAAGACCGTGTCTGGGACATGGCATCGGCCTTGTTGGTGATAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCAGCCTGGTTGGCGAGAGCTAGTG
36030173 TAAGACCATGTCTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
36030199 GGCATACTTA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
48 1 0.02
49 38 0.58
50 27 0.41
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCAGCCTGGTTGGCGAGAGCTAGTG
Found at i:36032968 original size:21 final size:22
Alignment explanation
Indices: 36032942--36032982 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
36032932 CACTAGACAC
36032942 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
36032963 AGGGGCAATACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
36032983 ACCAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:36034265 original size:47 final size:45
Alignment explanation
Indices: 36034202--36034329 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 45
36034192 ACATCACGTA
36034202 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-T-
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG--T-AAGTG
*
36034248 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAA-GTG
*
36034296 GCCGATGCATGTCCCAGACATGTCTTACATTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
36034330 GCACAAAATA
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
45 2 0.03
46 19 0.26
47 29 0.39
48 24 0.32
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTAAGTG
Found at i:36041762 original size:47 final size:45
Alignment explanation
Indices: 36041687--36041949 Score: 175
Period size: 47 Copynumber: 5.7 Consensus size: 45
36041677 AGGGTATAAT
*
36041687 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACGTTAA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCACG-TAA
** ** **
36041734 GTTGATGCCATGTCCCAGACATGCTCTTACACTAACAGATCAC-T-A
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTGGC-TCTCACGTAA
* * *
36041779 GCCGATG-CATGTCCTAGACATGTCTTACACTGGCTTACATCAAG-AG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGC-T-C-TCACGTAA
* ** *
36041825 GTCGATG-CATGTCCCAGACATGTCTTACACTAACTCTCGTC-TCAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTC-ACGT-AA
*
36041870 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCA--TAA
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCACGTAA
* *
36041915 TGTGGCTGATG-CATGTCCCAAACATGTCTTACACT
1 ----GCCGATGCCATGTCCCAGACATGTCTTACACT
36041950 AGCGCACAAA
Statistics
Matches: 169, Mismatches: 32, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
43 12 0.07
44 15 0.09
45 13 0.08
46 49 0.29
47 56 0.33
48 24 0.14
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCACGTAA
Found at i:36041926 original size:94 final size:88
Alignment explanation
Indices: 36041684--36041950 Score: 292
Period size: 94 Copynumber: 2.9 Consensus size: 88
36041674 CATAGGGTAT
*
36041684 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACGTTAAGT--TGATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA---TAAGTGGTGATG-CATGT
36041747 CCCAGACATGCTCTTACACTAACAGATC
62 CCCAGACATG-TCTTACACTAACAGATC
* * *
36041775 ACTAGCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACATCAAGAGGTCGATGCATGT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-AAGTGGT-GATGCATGT
* *
36041837 CCCAGACATGTCTTACACTAACTCTCGTCTC
62 CCCAGACATGTCTTACACTAA--C-AG-ATC
*
36041868 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATAATGTGGCTGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAA-GTGG-TGATGCATGTCC
*
36041933 CAAACATGTCTTACACTA
64 CAGACATGTCTTACACTA
36041951 GCGCACAAAA
Statistics
Matches: 150, Mismatches: 11, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
87 1 0.01
88 3 0.02
89 12 0.08
90 32 0.21
91 19 0.13
92 15 0.10
93 19 0.13
94 47 0.31
95 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (88 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAGTGGTGATGCATGTCCCA
GACATGTCTTACACTAACAGATC
Found at i:36044933 original size:30 final size:30
Alignment explanation
Indices: 36044897--36044957 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36044887 TTCCCGAGCC
36044897 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
36044927 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
36044957 T
1 T
36044958 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:36045773 original size:64 final size:64
Alignment explanation
Indices: 36045692--36045875 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
36045682 AGACATTATG
* *
36045692 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
36045756 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACTATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36045821 AA
63 AA
* * *
36045823 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGCT-CACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCATGTAG-ACAAGAGAGC
36045876 CGAACTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36050044 original size:17 final size:17
Alignment explanation
Indices: 36050008--36050045 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
36049998 ATATCAACTC
*
36050008 CATTTTAGACGTATTCA
1 CATTTTAGACGTAGTCA
36050025 CATTTTAGACGTTAGT-A
1 CATTTTAGACG-TAGTCA
36050042 CATT
1 CATT
36050046 CAGAGGCGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (17 bp):
CATTTTAGACGTAGTCA
Found at i:36053365 original size:39 final size:40
Alignment explanation
Indices: 36053264--36053487 Score: 264
Period size: 40 Copynumber: 5.7 Consensus size: 40
36053254 TTGAATGATG
* *
36053264 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36053303 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
36053344 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36053383 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
36053422 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36053461 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36053488 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36053510 original size:79 final size:78
Alignment explanation
Indices: 36053317--36053487 Score: 229
Period size: 78 Copynumber: 2.2 Consensus size: 78
36053307 GGACTAAGAT
* *
36053317 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACT-ATTCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
36053381 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
* * *
36053395 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGTGCGAGATACT-ATTCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTA
*
36053459 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
36053475 CCGAAGGCATTTG
1 CCGAAGGCATTTG
36053488 AACGAGTAGC
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
78 37 0.45
79 32 0.39
80 14 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTATTCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:36053518 original size:79 final size:79
Alignment explanation
Indices: 36053317--36053520 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
36053307 GGACTAAGAT
** * * * * *
36053317 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
36053381 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
36053395 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
36053459 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
** *
36053475 CCGAAGGCATTTGAACGAG-TAGCTATGTCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
36053521 TACGTGATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 34 0.32
79 49 0.46
80 24 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36058786 original size:26 final size:25
Alignment explanation
Indices: 36058738--36058789 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
36058728 TAACTCATAA
36058738 ATTTCACATTTCACAAATTAGTCCCT
1 ATTTCACATTTCACAAA-TAGTCCCT
36058764 ATTTCACATTTTCAGCAAA-AGTCCCT
1 ATTTCACA-TTTCA-CAAATAGTCCCT
36058790 TAACAAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.62
27 5 0.21
28 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (25 bp):
ATTTCACATTTCACAAATAGTCCCT
Found at i:36062285 original size:42 final size:42
Alignment explanation
Indices: 36062214--36062377 Score: 132
Period size: 42 Copynumber: 3.8 Consensus size: 42
36062204 TAGCCCAGCT
* * ** **
36062214 ATGGTCTTACACGAAGTCTCATGTTGATGCCATGTCTAAGAC
1 ATGGTCTTACACGAAATCACATGCCGATGCCATGTCCCAGAC
* *
36062256 ATGGTCTTACACGAAATCACATGCCGATGCCATATCCCAGAT
1 ATGGTCTTACACGAAATCACATGCCGATGCCATGTCCCAGAC
* *
36062298 ATGGTCTTATACAGGATCATAT-ATCGATGCCAATGCCATGTCCCAGAC
1 ATGGTC-T-TACACGA--A-ATCA-C-ATGCCGATGCCATGTCCCAGAC
* * **
36062346 ATGGTCTTACATGAGATCACATATCGATGCCA
1 ATGGTCTTACACGAAATCACATGCCGATGCCA
36062378 ATGCCATATC
Statistics
Matches: 97, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
42 49 0.51
43 4 0.04
44 7 0.07
46 8 0.08
47 4 0.04
48 25 0.26
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCACATGCCGATGCCATGTCCCAGAC
Found at i:36062350 original size:48 final size:50
Alignment explanation
Indices: 36062276--36062417 Score: 197
Period size: 48 Copynumber: 3.0 Consensus size: 50
36062266 ACGAAATCAC
* *
36062276 ATGCCGATGCCATATCCCAGATATGGTCTTATACA-G-GATCATATATCG
1 ATGCCAATGCCATATCCCAGATATGGTCTTATACATGAGATCACATATCG
* *
36062324 ATGCCAATGCCATGTCCCAGACATGGTC-T-TACATGAGATCACATATCG
1 ATGCCAATGCCATATCCCAGATATGGTCTTATACATGAGATCACATATCG
*
36062372 ATGCCAATGCCATATCCCAGATATGGTC-T-TACATGGGATCACATAT
1 ATGCCAATGCCATATCCCAGATATGGTCTTATACATGAGATCACATAT
36062418 ATTGCCATGG
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 4 0.05
47 2 0.02
48 79 0.93
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATATCCCAGATATGGTCTTATACATGAGATCACATATCG
Found at i:36074143 original size:40 final size:40
Alignment explanation
Indices: 36073905--36074129 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
36073895 TTGAATGATG
* * * *
36073905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
36073945 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36073985 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36074024 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36074064 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36074105 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36074130 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 36 0.22
40 121 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36082008 original size:39 final size:40
Alignment explanation
Indices: 36081915--36082129 Score: 227
Period size: 39 Copynumber: 5.5 Consensus size: 40
36081905 TGAATGATGT
* * * *
36081915 CGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TC
*
36081955 C-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTC
*
36081994 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
*
36082033 CGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAA-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* *
36082071 C-GGTTAAGT-CCGAAGGCA-TTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
36082108 CGGGCTATGTCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
36082130 GAACGAGTAG
Statistics
Matches: 152, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
35 10 0.07
36 13 0.09
37 10 0.07
38 9 0.06
39 72 0.47
40 38 0.25
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:36082111 original size:75 final size:76
Alignment explanation
Indices: 36081965--36082162 Score: 258
Period size: 75 Copynumber: 2.6 Consensus size: 76
36081955 CGACTAAGAT
* *
36081965 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-TACTAA-TCC-GGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
*
36082030 ATCCGGGTTAAGTC
63 ATCCGGGCTAAGTC
36082044 CCGAAGGCATTTGTGCGAGTACTAATCCGGTTAAGTCCGAAGGCA-TTGTGCGAGTTACTATAA-
1 CCGAAGGCATTTGTGCGAGTACTAATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AAT
*
36082107 CCGGGCTATGTC
65 CCGGGCTAAGTC
** *
36082119 CCGAAGGCA-TTGAACGAGTAGCTATATCCGGTTAAATCCGAAGG
1 CCGAAGGCATTTGTGCGAGTA-CTA-ATCCGGTTAAGTCCGAAGG
36082163 TACGTGATTG
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
74 9 0.08
75 37 0.34
76 35 0.32
77 3 0.03
78 6 0.06
79 19 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTACTAATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
CGGGCTAAGTC
Found at i:36082137 original size:114 final size:118
Alignment explanation
Indices: 36081915--36082162 Score: 282
Period size: 114 Copynumber: 2.2 Consensus size: 118
36081905 TGAATGATGT
* *
36081915 CGGGCTAAGTCCCAAAGGCTTTGTGCTAAGTGACCATATCCGACTAAGATCCGAAGGCATTTGTG
1 CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGACTAAGATCCGAAGGCATTTGTG
* **
36081980 CGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTA-CTAAATC
66 CGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TAGCTAAATC
* * **
36082033 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTA-ATCCGGTTAAG-TCCGAAGGCA-TTGT
1 CGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGACTAAGATCCGAAGGCATTTGT
* *
36082093 GCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCA-TTGAACGAGTAGCTATATC
65 GCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTAGCTAAATC
*
36082147 C-GGTTAAAT-CCGAAGG
1 CGGGTTAAGTCCCGAAGG
36082163 TACGTGATTG
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
112 7 0.06
113 11 0.10
114 37 0.32
115 20 0.18
116 9 0.08
117 3 0.03
118 20 0.18
119 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (118 bp):
CGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAGCTAAATC
Found at i:36094287 original size:13 final size:13
Alignment explanation
Indices: 36094269--36094296 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36094259 ACATATTATA
36094269 AATATTTTGTGTT
1 AATATTTTGTGTT
36094282 AATATTTTGTGTT
1 AATATTTTGTGTT
36094295 AA
1 AA
36094297 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:36095758 original size:40 final size:40
Alignment explanation
Indices: 36095710--36095980 Score: 447
Period size: 40 Copynumber: 6.8 Consensus size: 40
36095700 GGACTAAGAT
36095710 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
36095750 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
36095790 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
36095830 CCGAAGGCATTTGTGATAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
36095870 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
36095910 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
36095950 CCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 CCGAAGGCATTTGTGCTAGTTACTATATCCG
36095981 ACTAAATCCT
Statistics
Matches: 215, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 211 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:36095832 original size:80 final size:80
Alignment explanation
Indices: 36095694--36095980 Score: 504
Period size: 80 Copynumber: 3.6 Consensus size: 80
36095684 TCTTCGGATG
*
36095694 ATAATCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
36095759 TTTGTGCTAGTTACT
66 TTTGTGCTAGTTACT
36095774 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
36095839 TTTGTGATAGTTACT
66 TTTGTGCTAGTTACT
36095854 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
36095919 TTTGTGCTAGTTACT
66 TTTGTGCTAGTTACT
* * * *
36095934 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 ATAACCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATATCCG
36095981 ACTAAATCCT
Statistics
Matches: 199, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
79 1 0.01
80 198 0.99
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (80 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTTACT
Found at i:36111071 original size:50 final size:49
Alignment explanation
Indices: 36110961--36111242 Score: 248
Period size: 50 Copynumber: 5.6 Consensus size: 49
36110951 CTGGTATGCA
* * *
36110961 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCT-AGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC-ATTTGA-TACACG
* * * *
36111010 TAGTAGCCTGCAGTTAGTACTACACACGTGACCTGACCATTTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACATTTGATACACG
* * * * *
36111060 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAA-GTTGTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACATT-T-GA-TACACG
* * *
36111111 TAGTAGCCTGCGCTTAGTACTACACATGCGACCTAACTATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC-ATTTGATACACG
* * * *
36111161 TAGTAGCCTGCACTTTGTACTACACACGTGACCTAAAACCATCTT-AAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AA-CAT-TTGATACACG
* *
36111213 TAGTAGCCTGCACATAGTACTATACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
36111243 TTCTTACAAT
Statistics
Matches: 186, Mismatches: 35, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
48 2 0.01
49 32 0.17
50 73 0.39
51 39 0.21
52 35 0.19
53 5 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACATTTGATACACG
Found at i:36111135 original size:101 final size:99
Alignment explanation
Indices: 36110961--36111193 Score: 279
Period size: 101 Copynumber: 2.3 Consensus size: 99
36110951 CTGGTATGCA
* * **
36110961 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTAGTACATGTAGTAGCCTGCAGTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCGAGTACACATAGTAGCCTGCAGTTA
* * *
36111026 GTACTACACACGTGACCTGACCATTTGATATACG
66 GTACTACACACGCGACCTAACCATTTGATACACG
* *** *
36111060 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTGTCGAGTACGCATAGTAGCCTGC-GC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-CAATCGAGTACACATAGTAGCCTGCAG-
* * *
36111124 TTAGTACTACACATGCGACCTAACTATTTGGTACACG
63 TTAGTACTACACACGCGACCTAACCATTTGATACACG
* *
36111161 TAGTAGCCTGCACTTTGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
36111194 TAAAACCATC
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
99 30 0.27
100 5 0.04
101 78 0.69
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCGAGTACACATAGTAGCCTGCAGTTA
GTACTACACACGCGACCTAACCATTTGATACACG
Found at i:36113088 original size:22 final size:23
Alignment explanation
Indices: 36113040--36113089 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
36113030 ATACCATACA
* *
36113040 TTATTCTATATATTACATTTATT
1 TTATTCTAAATATTACATTTATC
36113063 TTATTCTAAA-ATATACA-TTATC
1 TTATTCTAAATAT-TACATTTATC
36113085 TTATT
1 TTATT
36113090 ACCTATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.34, C:0.10, G:0.00, T:0.56
Consensus pattern (23 bp):
TTATTCTAAATATTACATTTATC
Found at i:36130344 original size:42 final size:43
Alignment explanation
Indices: 36130244--36130358 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
36130234 CTGAGACATT
* * *
36130244 GTGTAAGACCGTATCTGGGACATAGGCCTCGATTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
* * * *
36130287 GTATAAGACCATGTCTAGGACATCGGCATCGTATT-TGATTT-C
1 GTGTAAGACCATGTCTGGGACATAGGCATCG-ATTGAGATTTAC
* *
36130329 GTGTAAGACCCTGTCTGGGACAAAGGCATC
1 GTGTAAGACCATGTCTGGGACATAGGCATC
36130359 AATATTGCAT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 26 0.44
43 30 0.51
44 3 0.05
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTAC
Found at i:36130799 original size:30 final size:30
Alignment explanation
Indices: 36130765--36130824 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
36130755 AGGCTCGAGG
36130765 ATAGTCGAGGATCGTCACCACACTATTGAT
1 ATAGTCGAGGATCGTCACCACACTATTGAT
36130795 ATAGTCGAGGATCGTCACCACACTATTGAT
1 ATAGTCGAGGATCGTCACCACACTATTGAT
36130825 CTCATTTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (30 bp):
ATAGTCGAGGATCGTCACCACACTATTGAT
Found at i:36140723 original size:17 final size:17
Alignment explanation
Indices: 36140703--36140737 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36140693 TACTACACTT
36140703 AGGAAACCAGATCCAAC
1 AGGAAACCAGATCCAAC
36140720 AGGAAACCAGATCCAAC
1 AGGAAACCAGATCCAAC
36140737 A
1 A
36140738 CAGTCAATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.29, G:0.17, T:0.06
Consensus pattern (17 bp):
AGGAAACCAGATCCAAC
Found at i:36145237 original size:23 final size:23
Alignment explanation
Indices: 36145206--36145256 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
36145196 AAATAGACTC
* *
36145206 TTTAGGGATTTTAAACGTATAAA
1 TTTAAGGATTTTAAACATATAAA
36145229 TTTAAGGATTTTAAACATATAAA
1 TTTAAGGATTTTAAACATATAAA
36145252 TTTAA
1 TTTAA
36145257 TCCCTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (23 bp):
TTTAAGGATTTTAAACATATAAA
Found at i:36148695 original size:28 final size:28
Alignment explanation
Indices: 36148663--36148746 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
36148653 AACACACCAG
* *
36148663 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
36148691 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
*
36148719 TATAATCCATCCAAAGCACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
36148747 GCACAAAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 33 0.66
29 17 0.34
ACGTcount: A:0.45, C:0.31, G:0.05, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:36148718 original size:23 final size:23
Alignment explanation
Indices: 36148625--36148719 Score: 84
Period size: 23 Copynumber: 3.9 Consensus size: 23
36148615 ACGGATTCCA
* *
36148625 TCCAAAACACACCAAAAT-GTCC
1 TCCAAAACACACCAGAATAATCC
* *
36148647 AACCAAAACACACCAGTATAATCC
1 -TCCAAAACACACCAGAATAATCC
36148671 TCCAAAACACACCAGTATCATATAATCC
1 TCCAAAACACACCAG----A-ATAATCC
*
36148699 TCCCAAACACACCAGAATAAT
1 TCCAAAACACACCAGAATAAT
36148720 ATAATCCATC
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
23 34 0.58
24 4 0.07
28 21 0.36
ACGTcount: A:0.46, C:0.34, G:0.04, T:0.16
Consensus pattern (23 bp):
TCCAAAACACACCAGAATAATCC
Found at i:36151463 original size:16 final size:16
Alignment explanation
Indices: 36151442--36151474 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36151432 TATTATTCCT
*
36151442 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
36151458 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
36151474 T
1 T
36151475 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:36151624 original size:12 final size:12
Alignment explanation
Indices: 36151599--36151636 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
36151589 ACAAAACAAC
36151599 ATAAAAT-A-AG
1 ATAAAATAACAG
36151609 ATAAAATAACAG
1 ATAAAATAACAG
*
36151621 ATAAAATAACAT
1 ATAAAATAACAG
36151633 ATAA
1 ATAA
36151637 CATATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 7 0.28
11 1 0.04
12 17 0.68
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (12 bp):
ATAAAATAACAG
Found at i:36154895 original size:40 final size:40
Alignment explanation
Indices: 36154812--36155032 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
36154802 ACCCAAGTAT
** * *
36154812 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36154850 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36154890 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
36154930 CTTTGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
36154970 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
36155011 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
36155033 CATTCGAATA
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 95 0.63
41 29 0.19
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36163026 original size:40 final size:40
Alignment explanation
Indices: 36162929--36163112 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
36162919 CTCGCACAAG
* * *
36162929 GCCTTCGGGTCTTAGCCCAGATATGGTCACT-GCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
36162968 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
36163008 GCCTTTGGGTTTTGGCCCGGATATAGTAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
36163048 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
36163089 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
36163113 CATTCGAATA
Statistics
Matches: 120, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 27 0.22
40 64 0.53
41 29 0.24
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:36182134 original size:30 final size:30
Alignment explanation
Indices: 36182098--36182158 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36182088 CATTTAATAC
*
36182098 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
36182128 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
36182158 A
1 A
36182159 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:36192139 original size:39 final size:40
Alignment explanation
Indices: 36192094--36192225 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
36192084 GCTCCTCGTT
* * *
36192094 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36192134 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
36192173 CGAATGCCATCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36192213 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
36192226 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 35 0.44
40 45 0.56
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36192238 original size:40 final size:40
Alignment explanation
Indices: 36192094--36192278 Score: 124
Period size: 40 Copynumber: 4.7 Consensus size: 40
36192084 GCTCCTCGTT
* * * * * * *
36192094 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCATCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
36192134 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAAGGCCATCGGGACTTAACCCGGATTTAATAACTCGCA
* * * *
36192173 CGAATGCCATCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAAGGCCATCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * * *
36192213 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAAGGCCATCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
* *
36192254 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCATCGGGACTTAACCCGGA
36192279 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 38 0.31
40 73 0.60
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAAGGCCATCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:36192287 original size:41 final size:41
Alignment explanation
Indices: 36192210--36192287 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36192200 TTAGTATCTC
* * *
36192210 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36192251 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36192288 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36200098 original size:40 final size:39
Alignment explanation
Indices: 36200000--36200106 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
36199990 TCCTCGTTCA
* * *
36200000 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC
**
36200039 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGTAC
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC
*
36200078 GAATGCCTTCGGGACTTAACCCGGATTTA
1 -AATGCCTTCGGGACATAACCCGGATTTA
36200107 GTATCTCGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.56
40 27 0.44
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC
Found at i:36200126 original size:40 final size:40
Alignment explanation
Indices: 36199998--36200128 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
36199988 GCTCCTCGTT
* * *
36199998 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
36200038 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGTA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36200077 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36200117 CAAAGGCCTTCG
1 CAAATGCCTTCG
36200129 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 45 0.57
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36217138 original size:24 final size:25
Alignment explanation
Indices: 36217096--36217142 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
36217086 TTAAAATATG
*
36217096 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
36217121 AAAATGACCA-TTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
36217143 GTTTATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:36217193 original size:9 final size:9
Alignment explanation
Indices: 36217181--36217237 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36217171 TTTGATAAAC
36217181 ATGATATGT
1 ATGATATGT
*
36217190 ATGATATGCAC
1 ATGATATG--T
*
36217201 ATGAAATGT
1 ATGATATGT
*
36217210 ATGATATGCAC
1 ATGATATG--T
36217221 ATGATATGT
1 ATGATATGT
36217230 ATGATATG
1 ATGATATG
36217238 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36217204 original size:20 final size:20
Alignment explanation
Indices: 36217179--36217241 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36217169 ATTTTGATAA
36217179 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36217199 ACATGAAATGTATGATATGC
1 ACATGATATGTATGATATGC
36217219 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36217239 ACA
1 ACA
36217242 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36217351 original size:24 final size:24
Alignment explanation
Indices: 36217295--36217437 Score: 195
Period size: 23 Copynumber: 6.0 Consensus size: 24
36217285 GAGGAAGTGC
36217295 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36217319 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
36217342 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
36217366 -AAAGGGCTTATGCTCCAGTTAGTAA
1 AAAAGGGCTTATGCCCCAGTTA-T-T
36217391 AAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
36217414 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
36217438 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
23 49 0.46
24 31 0.29
25 18 0.17
26 9 0.08
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:36217364 original size:47 final size:49
Alignment explanation
Indices: 36217295--36217416 Score: 205
Period size: 47 Copynumber: 2.6 Consensus size: 49
36217285 GAGGAAGTGC
*
36217295 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA-T-T
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAGTAA
*
36217342 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCTCCAGTTAGTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAGTAA
36217391 AAAAGGGCTT-TGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
36217417 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
47 44 0.62
48 17 0.24
49 10 0.14
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAGTAA
Found at i:36217665 original size:31 final size:31
Alignment explanation
Indices: 36217630--36217693 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36217620 CGTTTACAGT
36217630 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36217661 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36217692 AA
1 AA
36217694 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36225312 original size:9 final size:9
Alignment explanation
Indices: 36225300--36225356 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
36225290 TTTGATAAAC
36225300 ATGATATGT
1 ATGATATGT
*
36225309 ATGATATGCAC
1 ATGATATG--T
*
36225320 ATGACATGT
1 ATGATATGT
*
36225329 ATGATATGCAC
1 ATGATATG--T
36225340 ATGATATGT
1 ATGATATGT
36225349 ATGATATG
1 ATGATATG
36225357 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:36225323 original size:20 final size:20
Alignment explanation
Indices: 36225298--36225360 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
36225288 ATTTTGATAA
36225298 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36225318 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
36225338 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
36225358 ACA
1 ACA
36225361 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36226933 original size:40 final size:40
Alignment explanation
Indices: 36226863--36227161 Score: 408
Period size: 40 Copynumber: 7.5 Consensus size: 40
36226853 AAGCCAAGTA
* * *
36226863 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
36226902 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36226942 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36226982 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36227022 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
36227062 CCTTCGGGACTTAGCCCGGATGTAATAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36227102 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
36227143 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36227162 TTATCATCCA
Statistics
Matches: 235, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.05
40 196 0.83
41 24 0.10
42 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36229072 original size:31 final size:31
Alignment explanation
Indices: 36229037--36229100 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36229027 CATTTACAGT
36229037 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36229068 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36229099 AA
1 AA
36229101 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Done.