Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 112 of 320
Found at i:36237440 original size:32 final size:32
Alignment explanation
Indices: 36237366--36237442 Score: 136
Period size: 32 Copynumber: 2.4 Consensus size: 32
36237356 AGGGGACTAT
* *
36237366 TTTCCTATAACGAAACCGTGTAAGCAAAAGAA
1 TTTCCTATAATGAAACCGTGTAAACAAAAGAA
36237398 TTTCCTATAATGAAACCGTGTAAACAAAAGAA
1 TTTCCTATAATGAAACCGTGTAAACAAAAGAA
36237430 TTTCCTATAATGA
1 TTTCCTATAATGA
36237443 GATATTTGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (32 bp):
TTTCCTATAATGAAACCGTGTAAACAAAAGAA
Found at i:36237598 original size:20 final size:20
Alignment explanation
Indices: 36237573--36237613 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
36237563 CTTAATGAGT
36237573 CTATTTACAAAAGAAATAGA
1 CTATTTACAAAAGAAATAGA
*
36237593 CTATTTTCAAAAGAAATAGA
1 CTATTTACAAAAGAAATAGA
36237613 C
1 C
36237614 GGAAACATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (20 bp):
CTATTTACAAAAGAAATAGA
Found at i:36241527 original size:39 final size:40
Alignment explanation
Indices: 36241484--36241651 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
36241474 CTCGTTCAAG
* * * *
36241484 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
36241523 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
36241563 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
36241603 GGCCTTCGGGACTTGACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
36241643 TGCCTTCGG
1 TGCCTTCGG
36241652 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 26 0.24
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:36241664 original size:40 final size:40
Alignment explanation
Indices: 36241521--36241651 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
36241511 TAACTCATAC
* *
36241521 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
36241561 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* *
36241601 AAGGCCTTCGGGACTTGACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
36241641 AATGCCTTCGG
1 AATGCCTTCGG
36241652 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:36241688 original size:80 final size:78
Alignment explanation
Indices: 36241519--36241704 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 78
36241509 AGTAACTCAT
* * *
36241519 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 ACAAAGCCTTCGGGACTT-ACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
36241584 AATTAGTATCTCGC
65 AATTAGTATCTAGC
**
36241598 ACAAAGGCCTTCGGGACTTGACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 ACAAA-GCCTTCGGGACTT-ACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACC
36241661 CGG-ATATAGTCA-CTTAGC
62 CGGAAT-TAGT-ATC-TAGC
*
36241679 ACAAAGCCTTTGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTA-CCCGGA
36241705 CAGCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
79 14 0.15
80 69 0.75
81 9 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
ACAAAGCCTTCGGGACTTACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTATCTAGC
Found at i:36254081 original size:55 final size:54
Alignment explanation
Indices: 36253986--36254135 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
36253976 CTACTTTGTT
* ** * *
36253986 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
36254040 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
36254095 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
36254136 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:36254098 original size:27 final size:27
Alignment explanation
Indices: 36253958--36254135 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
36253948 TAAATTGTAC
36253958 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
36253985 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
36254011 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
36254039 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
36254067 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
36254094 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
36254121 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36254136 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:36254099 original size:82 final size:81
Alignment explanation
Indices: 36253959--36254114 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
36253949 AAATTGTACA
* * * *
36253959 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
36254024 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
36254040 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
36254103 TGTGCGAGTTGA
63 TGTGCGAATTGA
36254115 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:36262087 original size:55 final size:54
Alignment explanation
Indices: 36261992--36262141 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
36261982 CTACTTTGTT
* ** * *
36261992 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
36262046 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
36262101 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
36262142 GCTCAATATA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:36262104 original size:27 final size:27
Alignment explanation
Indices: 36261964--36262141 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
36261954 TAAATTGTAC
36261964 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
36261991 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
36262017 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
36262045 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
36262073 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
36262100 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
36262127 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36262142 GCTCAATATA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:36262105 original size:82 final size:81
Alignment explanation
Indices: 36261965--36262120 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
36261955 AAATTGTACA
* * * *
36261965 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
36262030 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
36262046 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
36262109 TGTGCGAGTTGA
63 TGTGCGAATTGA
36262121 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:36280163 original size:13 final size:14
Alignment explanation
Indices: 36280135--36280166 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
36280125 TCTTTCCTTA
36280135 CATAATGGGAATAT
1 CATAATGGGAATAT
36280149 CATAATGGG-ATAT
1 CATAATGGGAATAT
36280162 CATAA
1 CATAA
36280167 ACTTTCTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (14 bp):
CATAATGGGAATAT
Found at i:36281862 original size:28 final size:27
Alignment explanation
Indices: 36281798--36281949 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
36281788 TTATTAAGTC
* *
36281798 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
36281825 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
36281853 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36281880 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
36281908 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
36281935 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36281950 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36281882 original size:55 final size:55
Alignment explanation
Indices: 36281798--36281974 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
36281788 TTATTAAGTC
* * *
36281798 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
36281853 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
36281908 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
36281964 CGCACACTTAG
1 CGCACACTTAG
36281975 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:36304385 original size:11 final size:11
Alignment explanation
Indices: 36304371--36304395 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36304361 AAAACTGTAA
36304371 AAACTAATATT
1 AAACTAATATT
36304382 AAACTAATATT
1 AAACTAATATT
36304393 AAA
1 AAA
36304396 GGAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:36306906 original size:93 final size:93
Alignment explanation
Indices: 36306747--36306917 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36306737 GGATGGTTGA
* * *
36306747 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
36306812 TGAGTCCGAGTTCGTGCGATGTAACTAG
66 TGAGTCCGAGTTCGTGCGATGTAACTAG
* *
36306840 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
36306905 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36306918 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACACGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGCGATGTAACTAG
Found at i:36306920 original size:46 final size:46
Alignment explanation
Indices: 36306751--36306922 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
36306741 GGTTGAGCAT
* * *
36306751 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
36306797 CCGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGCGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
*
36306842 ATCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
36306890 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36306923 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
44 1 0.01
45 1 0.01
46 58 0.55
47 26 0.25
48 2 0.02
49 1 0.01
50 4 0.04
51 5 0.05
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:36310750 original size:40 final size:40
Alignment explanation
Indices: 36310640--36310751 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
36310630 TGGGATTTAA
*
36310640 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCATAGC
* * * *
36310680 CCGGATATAATC-GCTAGCATAAATGTCTTCGGGTCATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCATAGC
* *
36310720 CCGGATATAGCAACTCGCACGAATGCCTTCGG
1 CCGGATATAACAACTCGCACAAATGCCTTCGG
36310752 ATCTTAGTCC
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.02
40 57 0.97
41 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCATAGC
Found at i:36317225 original size:27 final size:27
Alignment explanation
Indices: 36317195--36317401 Score: 299
Period size: 27 Copynumber: 7.6 Consensus size: 27
36317185 TAAATTGTGC
* *
36317195 AGCACTAAGTGTACGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36317222 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
36317250 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36317277 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
36317305 AGCACTAAGTGTGCGAGTTT-ACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
36317332 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
36317360 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36317387 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36317402 GACTTAATAT
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
27 91 0.54
28 78 0.46
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36317259 original size:55 final size:55
Alignment explanation
Indices: 36317195--36317401 Score: 342
Period size: 55 Copynumber: 3.8 Consensus size: 55
36317185 TAAATTGTGC
*
36317195 AGCACTAAGTGTACGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
36317250 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
36317305 AGCACTAAGTGTGCGAGTTTACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
36317360 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
36317402 GACTTAATAT
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 144 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:36325347 original size:28 final size:28
Alignment explanation
Indices: 36325290--36325469 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
36325280 TAAATTGTGC
*
36325290 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
36325317 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
36325345 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
36325373 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
36325400 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
36325428 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
36325455 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36325470 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:36325354 original size:55 final size:55
Alignment explanation
Indices: 36325290--36325469 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
36325280 TAAATTGTGC
*
36325290 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
36325345 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
36325400 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
36325455 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36325470 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:36325429 original size:83 final size:82
Alignment explanation
Indices: 36325290--36325469 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
36325280 TAAATTGTGC
36325290 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
36325355 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
36325373 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
36325438 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
36325455 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36325470 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:36330996 original size:93 final size:93
Alignment explanation
Indices: 36330837--36331007 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
36330827 GGACGGTTGA
* * *
36330837 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
36330902 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
36330930 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
36330995 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36331008 ACTTAGGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36331010 original size:46 final size:46
Alignment explanation
Indices: 36330841--36331012 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
36330831 GGTTGAGCAT
* * * *
36330841 CCGAACTCGTTGAGTTGAGTCCAAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
36330887 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
36330932 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
36330980 CCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36331013 GGGGTGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 58 0.55
47 28 0.27
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:36333218 original size:49 final size:49
Alignment explanation
Indices: 36333161--36333344 Score: 235
Period size: 49 Copynumber: 3.7 Consensus size: 49
36333151 CGAAGCTATC
*
36333161 TGGTACACATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* * * * *
36333210 TGGTACACATAGTAGCCTGCACTTGGTACTACACACGTGATC-ATAGTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA-ATT
* * *
36333259 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATC
1 T--GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
* *
36333310 CGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
36333345 CGTGACCTCA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
48 3 0.03
49 72 0.63
51 37 0.32
52 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATT
Found at i:36333276 original size:100 final size:100
Alignment explanation
Indices: 36333162--36333349 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
36333152 GAAGCTATCT
* **
36333162 GGTACACATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTTGGTACACATAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCC
*
36333227 TGCACTTGGTACTACACACGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
* * *
36333262 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCC
36333327 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
36333350 CCTCACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGATCATAGTTTTCG
Found at i:36348985 original size:12 final size:12
Alignment explanation
Indices: 36348968--36348993 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36348958 CACATGCCCG
36348968 TGTGCTAGGCCA
1 TGTGCTAGGCCA
36348980 TGTGCTAGGCCA
1 TGTGCTAGGCCA
36348992 TG
1 TG
36348994 CCAAGCCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.35, T:0.27
Consensus pattern (12 bp):
TGTGCTAGGCCA
Found at i:36352760 original size:40 final size:40
Alignment explanation
Indices: 36352704--36352873 Score: 191
Period size: 40 Copynumber: 4.3 Consensus size: 40
36352694 GGACTAAGAT
* * * *
36352704 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
36352744 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
36352784 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * * *
36352824 CCGAAGGCA-TGGGGTGAGTTACTAAAAT-CGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTC
36352863 CCGAAGGCATT
1 CCGAAGGCATT
36352874 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 26 0.23
40 85 0.77
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:36360754 original size:39 final size:40
Alignment explanation
Indices: 36360603--36360772 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
36360593 GGACTAAGAT
* * *
36360603 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
36360643 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
36360683 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
36360723 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
36360762 CCGAAGGCATT
1 CCGAAGGCATT
36360773 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:36360792 original size:79 final size:80
Alignment explanation
Indices: 36360625--36360807 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
36360615 GTGCGAGATA
* * * *
36360625 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
36360690 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
36360705 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
36360769 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
36360784 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36360808 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:36368579 original size:80 final size:79
Alignment explanation
Indices: 36368430--36368652 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
36368420 TTGAATGCTG
* * * ** * * * * *
36368430 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
36368494 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
36368510 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
36368575 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
36368590 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
36368653 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:36368634 original size:39 final size:40
Alignment explanation
Indices: 36368483--36368652 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
36368473 GGACTAAGAT
* * *
36368483 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
36368523 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
36368563 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
36368603 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
36368642 CCGAAGGCATT
1 CCGAAGGCATT
36368653 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:36368672 original size:79 final size:80
Alignment explanation
Indices: 36368505--36368687 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
36368495 GTGCGAGATA
* * *
36368505 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
36368570 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
36368585 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
36368649 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
36368664 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36368688 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:36376548 original size:31 final size:31
Alignment explanation
Indices: 36376513--36376578 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
36376503 TCTTACTTGC
36376513 CTTTTGCCTCTCTTT-CTTTTT-ATTTCATTTT
1 CTTTTGCCTCT-TTTGCTTTTTCATTTC-TTTT
* * *
36376544 CTTTTTCTTCTTTTGCTTTTTCTTTTCTTTT
1 CTTTTGCCTCTTTTGCTTTTTCATTTCTTTT
36376575 CTTT
1 CTTT
36376579 GTTTTCTCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.10
31 23 0.77
32 4 0.13
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.73
Consensus pattern (31 bp):
CTTTTGCCTCTTTTGCTTTTTCATTTCTTTT
Found at i:36376552 original size:26 final size:25
Alignment explanation
Indices: 36376523--36376585 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
36376513 CTTTTGCCTC
36376523 TCTTTCTTTT-TATTTCATTTTCTTT
1 TCTTTCTTTTCTATTTC-TTTTCTTT
*
36376548 T-TCTTCTTTTGCTTTTTCTTTTCTTT
1 TCT-TTCTTTT-CTATTTCTTTTCTTT
*
36376574 TCTTTGTTTTCT
1 TCTTTCTTTTCT
36376586 CGTTACAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 1 0.03
25 10 0.31
26 15 0.47
27 6 0.19
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.76
Consensus pattern (25 bp):
TCTTTCTTTTCTATTTCTTTTCTTT
Found at i:36376562 original size:15 final size:14
Alignment explanation
Indices: 36376525--36376578 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 14
36376515 TTTGCCTCTC
*
36376525 TTTCTTTTTATTTCAT
1 TTTCTTTTT-CTTC-T
36376541 TTTCTTTTTCTTCT
1 TTTCTTTTTCTTCT
36376555 TTTGCTTTTTCTTTTCT
1 TTT-CTTTTTC--TTCT
36376572 TTTCTTT
1 TTTCTTT
36376579 GTTTTCTCGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
14 4 0.12
15 10 0.29
16 13 0.38
17 7 0.21
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTCTTTTTCTTCT
Found at i:36376579 original size:21 final size:20
Alignment explanation
Indices: 36376540--36376583 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
36376530 TTTTATTTCA
36376540 TTTTCTTTTTCTTCTTTTGCT
1 TTTTCTTTTTCTTCTTTTG-T
*
36376561 TTTTC-TTTTCTTTTCTTTGT
1 TTTTCTTTTTCTTCT-TTTGT
36376581 TTT
1 TTT
36376584 CTCGTTACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.00, C:0.16, G:0.05, T:0.80
Consensus pattern (20 bp):
TTTTCTTTTTCTTCTTTTGT
Found at i:36377667 original size:71 final size:71
Alignment explanation
Indices: 36377565--36377700 Score: 213
Period size: 71 Copynumber: 1.9 Consensus size: 71
36377555 CGAACTTTTC
*
36377565 TGATACGAGCTCGTTTCGTATGAAATAACGAGTCGTAATATTTCCCGATCGAAATTA-GTAGTGT
1 TGATACGAGCTCGTTTCGGATGAAATAACGAGTCGTAATATTTCCCGATCGAAA-TAGGTAGTGT
36377629 CGGCCTT
65 CGGCCTT
* *
36377636 TGATACGAGCTCGTTTCGGATGTAAA-GACGAGTCGTAATCTTTCCCGATCGAAATAGGTAGTGT
1 TGATACGAGCTCGTTTCGGATG-AAATAACGAGTCGTAATATTTCCCGATCGAAATAGGTAGTGT
36377700 C
65 C
36377701 AGAATTGAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
70 2 0.03
71 55 0.92
72 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (71 bp):
TGATACGAGCTCGTTTCGGATGAAATAACGAGTCGTAATATTTCCCGATCGAAATAGGTAGTGTC
GGCCTT
Found at i:36395799 original size:53 final size:54
Alignment explanation
Indices: 36395718--36395922 Score: 205
Period size: 53 Copynumber: 3.8 Consensus size: 54
36395708 TTTCCTTTTT
* * * *
36395718 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * *
36395771 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * * * * *
36395825 GTAAATCATCAATGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
* * * * * *
36395880 GAACTTATCAATGCCAAGCCTTGGCATGGTTTTACATGATATC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
36395923 TTTATCTTAC
Statistics
Matches: 124, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
53 45 0.36
54 35 0.28
55 44 0.35
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCATTGCCTTATA
Found at i:36395858 original size:55 final size:53
Alignment explanation
Indices: 36395729--36395917 Score: 200
Period size: 55 Copynumber: 3.5 Consensus size: 53
36395719 AACTTACCAT
* * * *
36395729 TGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
36395782 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAAATCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
* * * * *
36395837 TGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
* * *
36395891 TGCCAAGCCTTGGCATGGTTTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
36395918 ATATCTTTAT
Statistics
Matches: 112, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.31
54 31 0.28
55 43 0.38
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:36395964 original size:47 final size:47
Alignment explanation
Indices: 36395904--36396025 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
36395894 CAAGCCTTGG
* * * *
36395904 CATGGTTTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
36395951 CATGGTCTCACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
36395998 CGTGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
36396026 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:36396831 original size:30 final size:31
Alignment explanation
Indices: 36396788--36396845 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
36396778 CTAACTCAAA
36396788 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
* ** *
36396819 CTTT-GCAGAATTATGATTTTTCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
36396846 GGCTCGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:36403428 original size:23 final size:25
Alignment explanation
Indices: 36403380--36403430 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
36403370 GTCATAAACT
*
36403380 TAACTTCATCATATAACTTATACCA
1 TAACTTCATCATATAACATATACCA
36403405 TAAC-TCATTCATA-AACATAT-CCA
1 TAACTTCA-TCATATAACATATACCA
36403428 TAA
1 TAA
36403431 TCAAGCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (25 bp):
TAACTTCATCATATAACATATACCA
Found at i:36404039 original size:43 final size:42
Alignment explanation
Indices: 36403978--36404134 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 42
36403968 GAAGCATATA
36403978 CGATGCCAAC-GTCCCAGACGTGGTCTTACATGCAATCAAACAT
1 CGATGCC-ACTGTCCCAGACGTGGTCTTACA-GCAATCAAACAT
* * *
36404021 CGATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAGATA-
1 CGATGCCACTGTCCCAGAC-GTGGTCTTACA-GCAATCAAACAT
* * *
36404063 CGATGTCGA-TGTCCCAGACATGGTCTTACA-C-ATAAAACAGAAGT
1 CGATG-CCACTGTCCCAGACGTGGTCTTACAGCAATCAAAC---A-T
* *
36404107 CGATGCCAATGTCCCAGACGTGCTCTTA
1 CGATGCCACTGTCCCAGACGTGGTCTTA
36404135 GACAAAAACA
Statistics
Matches: 91, Mismatches: 13, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
39 4 0.04
42 27 0.30
43 37 0.41
44 23 0.25
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (42 bp):
CGATGCCACTGTCCCAGACGTGGTCTTACAGCAATCAAACAT
Found at i:36404162 original size:43 final size:44
Alignment explanation
Indices: 36404020--36404146 Score: 109
Period size: 44 Copynumber: 3.0 Consensus size: 44
36404010 CAATCAAACA
* * * * * *
36404020 TCGATGCCACTGTCCCAGACAGGGTCTTACAC-GAAATCA-GA-
1 TCGATGCCAATGTCCCAGACATGCTCTTACACATAAAACACAAG
* * * *
36404061 TACGATGTCGATGTCCCAGACATGGTCTTACACATAAAACAGAAG
1 T-CGATGCCAATGTCCCAGACATGCTCTTACACATAAAACACAAG
* *
36404106 TCGATGCCAATGTCCCAGACGTGCTCTTAGACA-AAAACACA
1 TCGATGCCAATGTCCCAGACATGCTCTTACACATAAAACACA
36404147 TATCGGATCC
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.01
42 27 0.39
43 12 0.17
44 28 0.41
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (44 bp):
TCGATGCCAATGTCCCAGACATGCTCTTACACATAAAACACAAG
Found at i:36409503 original size:47 final size:47
Alignment explanation
Indices: 36409381--36409592 Score: 255
Period size: 47 Copynumber: 4.7 Consensus size: 47
36409371 ATTATACGTG
* * *
36409381 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATGGA-TACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGT-CAT
* *
36409428 GTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
*
36409476 TAACGTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-T--GT-A-
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* *
36409516 -AA-GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
*
36409561 TAACGTGGTGCCAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
36409593 AACATGTAAC
Statistics
Matches: 141, Mismatches: 13, Indels: 21
0.81 0.07 0.12
Matches are distributed among these distances:
38 27 0.19
39 3 0.02
40 2 0.01
41 2 0.01
42 2 0.01
43 1 0.01
44 2 0.01
45 2 0.01
46 3 0.02
47 56 0.40
48 40 0.28
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
Found at i:36409527 original size:85 final size:85
Alignment explanation
Indices: 36409424--36409630 Score: 371
Period size: 85 Copynumber: 2.4 Consensus size: 85
36409414 ACATATGGAT
*
36409424 ACATGTAACA-TGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCT
1 ACATGTAA-AGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCC
36409488 AAGTGGATATACCACGGTTAA
65 AAGTGGATATACCACGGTTAA
*
36409509 ACATGTAAAGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCCA
1 ACATGTAAAGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCCA
36409574 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
36409594 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAAAGTGGTGCTAAGTGGATATGCCACGGTTA
36409631 TACATGTTAA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
84 1 0.01
85 117 0.99
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (85 bp):
ACATGTAAAGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAACGTGGTGCCA
AGTGGATATACCACGGTTAA
Found at i:36409531 original size:38 final size:38
Alignment explanation
Indices: 36409480--36409637 Score: 181
Period size: 38 Copynumber: 3.9 Consensus size: 38
36409470 AGTCATTAAC
36409480 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAA
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAA
* *
36409518 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAA
1 GTGGTGCTAAGTGGATATACCACGGTTA-A-ACA-TG--T-A--AA
* *
36409564 CGTGGTGCCAAGTGGATATACCACGGTTAAACATGTAAC
1 -GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAA
* *
36409603 GTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGT
36409638 TAATTTGCAA
Statistics
Matches: 102, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
38 59 0.58
39 2 0.02
40 2 0.02
41 3 0.03
42 1 0.01
43 1 0.01
44 3 0.03
45 2 0.02
46 3 0.03
47 26 0.25
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAA
Found at i:36412935 original size:15 final size:15
Alignment explanation
Indices: 36412888--36412929 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
36412878 GCTGTAAATG
36412888 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
36412903 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
36412918 GGATTTCCTTAT
1 GGATTTCCTTAT
36412930 TCTGGACTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:36415228 original size:38 final size:38
Alignment explanation
Indices: 36415177--36415415 Score: 154
Period size: 38 Copynumber: 5.8 Consensus size: 38
36415167 AATGAAAAAT
36415177 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
* * *
36415215 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATA---CGT--GTAAC
* * *
36415262 GTGGTGCTAAGTGGATATACCATGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
* * * * * * *
36415300 ATGATGCTAAGTGGGTATGCAACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GTAAC
* * *
36415347 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
* *
36415385 GTGGTGCTAAGTGGATATGCCATGGTTATAC
1 GTGGTGCTAAGTGGATATACCACGGTTATAC
36415416 ATGTTAATTT
Statistics
Matches: 151, Mismatches: 32, Indels: 36
0.69 0.15 0.16
Matches are distributed among these distances:
38 78 0.52
39 2 0.01
40 2 0.01
42 7 0.05
43 6 0.04
45 3 0.02
46 2 0.01
47 51 0.34
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
Found at i:36415289 original size:47 final size:47
Alignment explanation
Indices: 36415211--36415374 Score: 184
Period size: 47 Copynumber: 3.7 Consensus size: 47
36415201 GTTATACGTG
*
36415211 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAGTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* *
36415258 TAACGTGGTGCTAAGTGGATATACCATGGTTA-A-ACA-T--G----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
* * * * * *
36415296 TAACATGATGCTAAGTGGGTATGCAACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
36415343 TAACGTGGTGCTAAGTGGATATACCACGGTTA
1 TAACGTGGTGCTAAGTGGATATACCACGGTTA
36415375 AACATGTAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
38 26 0.28
39 1 0.01
40 2 0.02
41 1 0.01
42 1 0.01
44 1 0.01
45 2 0.02
46 1 0.01
47 57 0.62
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (47 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAGTCAT
Found at i:36415412 original size:85 final size:85
Alignment explanation
Indices: 36415177--36415412 Score: 382
Period size: 85 Copynumber: 2.8 Consensus size: 85
36415167 AATGAAAAAT
* *
36415177 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATGCCACGGTT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
36415242 ACATATATTGAGTCATTAAC
66 ACATATATTGAGTCATTAAC
* * * * *
36415262 GTGGTGCTAAGTGGATATACCATGGTTAAACATGTAACATGATGCTAAGTGGGTATGCAACGGTT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
*
36415327 ACATATATTGATTCATTAAC
66 ACATATATTGAGTCATTAAC
* *
36415347 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAATGTGGTGCTAAGTGGATATGCCATGGTT
1 GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
36415412 A
66 A
36415413 TACATGTTAA
Statistics
Matches: 136, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 136 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (85 bp):
GTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTT
ACATATATTGAGTCATTAAC
Found at i:36415614 original size:14 final size:14
Alignment explanation
Indices: 36415591--36415627 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
36415581 TACCGGAATA
36415591 TGAATATATGAGTTT
1 TGAAT-TATGAGTTT
36415606 TGAATTATGAGTTT
1 TGAATTATGAGTTT
36415620 TGAATTAT
1 TGAATTAT
36415628 CTTGAAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (14 bp):
TGAATTATGAGTTT
Found at i:36418203 original size:49 final size:50
Alignment explanation
Indices: 36418086--36418259 Score: 171
Period size: 49 Copynumber: 3.6 Consensus size: 50
36418076 GTATAATACT
* * * * **
36418086 GATGCCATGTCCCAGACATGGTCTTACACTAGC--TC--ATGTCTCAAGTT
1 GATGCCATGTCCCAAACATGGTCTTACACAAGCTATCGTATATC-CAGGCC
* *
36418133 GATGCCATGTCCCAAACATGGTCTTACAC-TGACTATCGT-TATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACAAG-CTATCGTATATCCAGGCC
* * * *
36418182 GATGTCATGTCCCAAATATGGTCTTACACAAGCTCTCGTATATCCATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACAAGCTATCGTATATCCAGGCC
*
36418232 CATGCCATGTCCCAAACATGGTCTTACA
1 GATGCCATGTCCCAAACATGGTCTTACA
36418260 TCGGCTTACT
Statistics
Matches: 104, Mismatches: 16, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 29 0.28
49 37 0.36
50 37 0.36
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAAACATGGTCTTACACAAGCTATCGTATATCCAGGCC
Found at i:36418253 original size:50 final size:49
Alignment explanation
Indices: 36418134--36418259 Score: 164
Period size: 50 Copynumber: 2.6 Consensus size: 49
36418124 TCTCAAGTTG
* * *
36418134 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTTATCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACAGACTATCGTTATCCAGGCCC
* * * *
36418183 ATGTCATGTCCCAAATATGGTCTTACACA-AGCTCTCGTATATCCATGCCC
1 ATGCCATGTCCCAAACATGGTCTTACACAGA-CTATCGT-TATCCAGGCCC
36418233 ATGCCATGTCCCAAACATGGTCTTACA
1 ATGCCATGTCCCAAACATGGTCTTACA
36418260 TCGGCTTACT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 32 0.48
50 33 0.50
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAAACATGGTCTTACACAGACTATCGTTATCCAGGCCC
Found at i:36418334 original size:99 final size:99
Alignment explanation
Indices: 36418134--36418356 Score: 246
Period size: 99 Copynumber: 2.3 Consensus size: 99
36418124 TCTCAAGTTG
* *
36418134 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTTATCGAGGCCGATGTCATGTCCCAAAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTTATCAAGGCCGATGTCATGTCCCAAAC
** *
36418199 ATGGTCTTACACAAGCTCTCGTATATCCATGCCC
66 ATCATATTACACAAGCTCTCGTATATCCATGCCC
*
36418233 ATGCCATGTCCCAAACATGGTCTTACA-TCGGCT-TAC-TTCA-CAAGGCCGATG-CATGTCCCA
1 ATGCCATGTCCCAAACATGGTCTTACACT-GACTAT-CGTT-ATCAAGGCCGATGTCATGTCCCA
* * * * *
36418293 GACA-CATATTACACTAGCTCTCGTCT-T-AATGCCG
63 AACATCATATTACACAAGCTCTCGTATATCCATGCCC
* *
36418327 ATGCCATGTCCCAGACATGGTCTGACACTG
1 ATGCCATGTCCCAAACATGGTCTTACACTG
36418357 GCTCTCATAA
Statistics
Matches: 107, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
94 31 0.29
95 2 0.02
96 17 0.16
97 11 0.10
98 14 0.13
99 32 0.30
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (99 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTTATCAAGGCCGATGTCATGTCCCAAAC
ATCATATTACACAAGCTCTCGTATATCCATGCCC
Found at i:36418374 original size:94 final size:95
Alignment explanation
Indices: 36418133--36418390 Score: 240
Period size: 94 Copynumber: 2.7 Consensus size: 95
36418123 GTCTCAAGTT
* * * *
36418133 GATGCCATGTCCCAAACATGGTCTTACACTGACTATCGTTATCGAGGCCGATGTCATGTCCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCATAAT--AGGCCGATG-CATGTCCCAGA
* ** * *
36418198 TATGGTCTTACACAAGCTCTCGTATATCCATGCC
62 CATCATATTACACAAGCTCTCGTATATCAATGCC
* *
36418232 CATGCCATGTCCCAAACATGGTCTTACA-TCGGCTTACTTCACA-AGGCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAAACATGGTCTTACACT-GGCTT-CAT-A-ATAGGCCGATGCATGTCCCAGA
* *
36418295 CA-CATATTACACTAGCTCTCGTCT-T-AATGCC
62 CATCATATTACACAAGCTCTCGTATATCAATGCC
* * *
36418326 GATGCCATGTCCCAGACATGGTCTGACACTGGCTCTCATAATATGGCCGATG-ATGTCCTAGACA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCT-TCATAATA-GGCCGATGCATGTCCCAGACA
36418390 T
64 T
36418391 GTCTGACACT
Statistics
Matches: 133, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
92 1 0.01
93 13 0.10
94 44 0.33
95 3 0.02
96 17 0.13
97 11 0.08
98 11 0.08
99 32 0.24
101 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTTCATAATAGGCCGATGCATGTCCCAGACATC
ATATTACACAAGCTCTCGTATATCAATGCC
Found at i:36419092 original size:13 final size:13
Alignment explanation
Indices: 36419074--36419098 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36419064 CTAAAAGTAC
36419074 AAAAATCATCAAG
1 AAAAATCATCAAG
36419087 AAAAATCATCAA
1 AAAAATCATCAA
36419099 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:36425953 original size:46 final size:47
Alignment explanation
Indices: 36425740--36426050 Score: 177
Period size: 47 Copynumber: 6.5 Consensus size: 47
36425730 ATACCAATGC
* * * * *
36425740 CATGTCCCAGACATGGTCTTACACTGGCTCATGTCT-CAAGTC-GTTG
1 CATGTCCCAGACATGGTCTTACACTGGCTC-TCTTTACGAGGCTGATG
* * * * * * * *
36425786 CCATGTCCCAGAGATGGTCTTACACTGACTATCGTCATCGGGGCCGACG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCTTTA-CGAGGCTGATG
* * * ** * * *
36425835 CCATGTCCCATACATGGTGTTACACTAGCTCTCGCATATC-CGTCTCGGTG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTC-TTTA-CGAGGCT-GATG
*
36425885 CCAGGTCCCAGACATGGTCTTACACTGGCT-TACTTTACGAGGCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCT-CTTTACGAGGCTGATG
* * * * *
36425933 CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCT-CAATGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTC-TTTACGAGGCTGATG
* * * * *
36425979 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCTTTACGAGGCTGATG
*
36426027 CATGTCCCAGGCAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
36426051 AACTCACAAT
Statistics
Matches: 200, Mismatches: 52, Indels: 25
0.72 0.19 0.09
Matches are distributed among these distances:
46 34 0.17
47 68 0.34
48 29 0.14
49 37 0.19
50 32 0.16
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCTTTACGAGGCTGATG
Found at i:36425995 original size:94 final size:96
Alignment explanation
Indices: 36425740--36426051 Score: 291
Period size: 94 Copynumber: 3.3 Consensus size: 96
36425730 ATACCAATGC
* * *
36425740 CATGTCCCAGACATGGTCTTACACTGGCTCAT-GTCTCAA-G-TCGTTGCCATGTCCCAGAGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTC-TCGTCTCAATGCTCGATGCCATGTCCCAGACATG
* * * * * *
36425802 GTCTTACACTGAC-TATCGTCATCGGGGCCGACG
65 GTCTTACACTGGCTTA-CAT-AACGAGGCTGATG
* * * ** * *
36425835 CCATGTCCCATACATGGTGTTACACTAGCTCTCGCATATCCGT-CTCGGTGCCAGGTCCCAGACA
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTCG--TCTCAATGCTCGATGCCATGTCCCAGACA
* *
36425899 TGGTCTTACACTGGCTTACTTTACGAGGCTGATG
63 TGGTCTTACACTGGCTTACATAACGAGGCTGATG
*
36425933 CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCT-GATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCTCGATGCCATGTCCCAGACATGG
* * *
36425996 TCTTACACTGGCTCT-CATAATGTGGTTGATG
66 TCTTACACTGGCT-TACATAACGAGGCTGATG
*
36426027 CATGTCCCAGGCAT-GTCTTACACTA
1 CATGTCCCAGACATGGTCTTACACTA
36426052 ACTCACAATA
Statistics
Matches: 177, Mismatches: 31, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
94 70 0.40
95 4 0.02
96 45 0.25
97 12 0.07
98 11 0.06
99 33 0.19
100 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.29
Consensus pattern (96 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCTCGATGCCATGTCCCAGACATGG
TCTTACACTGGCTTACATAACGAGGCTGATG
Found at i:36426746 original size:13 final size:13
Alignment explanation
Indices: 36426728--36426752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36426718 CTAAAAGTAC
36426728 AAAAATCATCAAG
1 AAAAATCATCAAG
36426741 AAAAATCATCAA
1 AAAAATCATCAA
36426753 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:36429776 original size:24 final size:24
Alignment explanation
Indices: 36429746--36429806 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 24
36429736 CAGAGCTAAT
*
36429746 GAACAGTAAGCTCT-ATTGAGCTG-
1 GAACAGTAAGCTCTGA-CGAGCTGA
36429769 GAAACAGTAAGCTCTGACGAGCTGA
1 G-AACAGTAAGCTCTGACGAGCTGA
36429794 GAACAGTAAGCTC
1 GAACAGTAAGCTC
36429807 GAATGTAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 1 0.03
24 31 0.91
25 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (24 bp):
GAACAGTAAGCTCTGACGAGCTGA
Found at i:36430757 original size:27 final size:27
Alignment explanation
Indices: 36430724--36431136 Score: 542
Period size: 27 Copynumber: 15.3 Consensus size: 27
36430714 AAATACCTCA
*
36430724 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
36430751 AAATACCCTTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
36430778 AAATACTCCTGTAAGGTAGAATTA-TCG
1 AAATACCCCTGTAAGGTAGAATTACT-G
*
36430805 AAATACCCCTAT-AGGTTAGAATTACTG
1 AAATACCCCTGTAAGG-TAGAATTACTG
* *
36430832 AAATACTCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36430859 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36430886 AAATACCCCTATAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36430913 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36430940 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36430967 AAATACCCATGTAAGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
36430994 AAATACCCCTGTAAGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36431021 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAAGGTAGAATTACTG
* *
36431048 AAATACCCCTGTAGGGTAGAATTACTT
1 AAATACCCCTGTAAGGTAGAATTACTG
* * * *
36431075 AAATACCCTTGTAGGGTAGAAATACTA
1 AAATACCCCTGTAAGGTAGAATTACTG
* * *
36431102 AAATACCTCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAAGGTAGAATTACTG
*
36431129 AGATACCC
1 AAATACCC
36431137 TCGTGGGGTA
Statistics
Matches: 340, Mismatches: 42, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
26 4 0.01
27 332 0.98
28 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAAGGTAGAATTACTG
Found at i:36431514 original size:22 final size:22
Alignment explanation
Indices: 36431482--36431540 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36431472 CCCGTTTTCG
*
36431482 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
36431504 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
36431526 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
36431541 ATGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:36431728 original size:27 final size:27
Alignment explanation
Indices: 36431698--36431833 Score: 152
Period size: 27 Copynumber: 5.0 Consensus size: 27
36431688 ATTCTGTTAA
* * *
36431698 GTGGCTTTGCTACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
*
36431725 GTGGCTCTGCCACAATATTCTGTTTCTG
1 GTGGCTCTGCCACAATA-TCTGATTCTG
*
36431753 GTGGCTATGCCACAAATATCTGA-TCTG
1 GTGGCTCTGCCAC-AATATCTGATTCTG
36431780 GTGGCTCTGCCACAATATCTG-TATCTG
1 GTGGCTCTGCCACAATATCTGAT-TCTG
* * *
36431807 GTGACTCTGTCACAATATTTG-TTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
36431833 G
1 G
36431834 CAGCCATGTT
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
26 13 0.14
27 53 0.56
28 25 0.26
29 4 0.04
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGATTCTG
Found at i:36431960 original size:6 final size:6
Alignment explanation
Indices: 36431951--36432066 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
36431941 TTGCATTCAC
* * *
36431951 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
36432001 ATTCTG ATTCTG ATTTTG ATTCTA ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
36432050 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
36432067 AGTTTTGATA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 4 0.05
6 70 0.82
7 8 0.09
8 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36431982 original size:25 final size:25
Alignment explanation
Indices: 36431954--36432015 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
36431944 CATTCACATT
* *
36431954 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
36431979 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
36432004 CTGATTCTGATT
1 CTGATTCTGATT
36432016 TTGATTCTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:36431989 original size:31 final size:31
Alignment explanation
Indices: 36431951--36432054 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
36431941 TTGCATTCAC
*
36431951 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
36431982 ATTCTGATTCTG-TCACCTAATT--CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACCTGATTCTG
* * *
36432013 ATTTTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
36432044 ATTCTGATTCT
1 ATTCTGATTCT
36432055 CATTTTGATT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
29 1 0.02
30 3 0.05
31 49 0.84
32 3 0.05
33 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:36432004 original size:19 final size:19
Alignment explanation
Indices: 36431979--36432049 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
36431969 TTACCTGATA
36431979 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* *
36431998 CTAATTCTGATTCTG--ATT
1 CTGATTCTGATTCTGTCA-C
* *
36432016 TTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
36432035 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
36432050 ATTCTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:36432014 original size:37 final size:37
Alignment explanation
Indices: 36431973--36432066 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
36431963 ATTCTGTTAC
*
36431973 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
36432010 CTGATTTTGATTCTAATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
36432047 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
36432067 AGTTTTGATA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:36445025 original size:31 final size:33
Alignment explanation
Indices: 36444957--36445047 Score: 98
Period size: 31 Copynumber: 2.8 Consensus size: 33
36444947 TCTAAATTAT
* *
36444957 TAAATTAATAATTTATTTTAATTATACTTAAAT
1 TAAATTAATAATTTATTCTAATTATACTTAAAC
* *
36444990 TAAATTATTAATTT-TTCTATTTA-ACTTAAAC
1 TAAATTAATAATTTATTCTAATTATACTTAAAC
** *
36445021 TAAA-TAATAATAAATTCTAAATATACT
1 TAAATTAATAATTTATTCTAATTATACT
36445048 AAATATAAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
30 6 0.13
31 18 0.38
32 10 0.21
33 13 0.28
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (33 bp):
TAAATTAATAATTTATTCTAATTATACTTAAAC
Found at i:36445042 original size:17 final size:17
Alignment explanation
Indices: 36445020--36445068 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
36445010 TTAACTTAAA
36445020 CTAAATAATAATAAATT
1 CTAAATAATAATAAATT
*
36445037 CTAAAT-ATACTAAA-T
1 CTAAATAATAATAAATT
*
36445052 ATAAATAATAACTAAAT
1 CTAAATAATAA-TAAAT
36445069 AATAACTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 10 0.38
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (17 bp):
CTAAATAATAATAAATT
Found at i:36445058 original size:26 final size:28
Alignment explanation
Indices: 36445018--36445111 Score: 83
Period size: 26 Copynumber: 3.4 Consensus size: 28
36445008 ATTTAACTTA
*
36445018 AACTAAATAATAATAAAT-TCTAAAT-AT
1 AACTAAATAA-AATAAATAACTAAATAAT
36445045 -ACTAAATATAAAT-AATAACTAAATAAT
1 AACTAAATA-AAATAAATAACTAAATAAT
*
36445072 AACTAAATAGAAATAAATATA-TATATAAT
1 AACTAAATA-AAATAAATA-ACTAAATAAT
*
36445101 AA-TATATAAAA
1 AACTAAATAAAA
36445112 ATAATATATA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 3 0.05
26 17 0.30
27 6 0.11
28 17 0.30
29 13 0.23
30 1 0.02
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (28 bp):
AACTAAATAAAATAAATAACTAAATAAT
Found at i:36445069 original size:11 final size:11
Alignment explanation
Indices: 36445053--36445080 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
36445043 ATACTAAATA
36445053 TAAATAATAAC
1 TAAATAATAAC
36445064 TAAATAATAAC
1 TAAATAATAAC
36445075 TAAATA
1 TAAATA
36445081 GAAATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAATAATAAC
Found at i:36445086 original size:43 final size:43
Alignment explanation
Indices: 36445018--36445164 Score: 129
Period size: 43 Copynumber: 3.3 Consensus size: 43
36445008 ATTTAACTTA
** *
36445018 AACTAAATAATAATAAATTCTAAATATACTAAATATA-AATAAT
1 AACTAAATAATAATAAA-TAGAAATATAATAAATATAGAATAAT
* *
36445061 AACTAAATAATAACTAAATAGAAATA-AATATATATATAATAAT
1 AACTAAATAATAA-TAAATAGAAATATAATAAATATAGAATAAT
*
36445104 ATA-TAAAAATAATATATAAATAGATAATATAATAATAGATAGAATAAT
1 A-ACT--AAATAATA-ATAAATAGA-AATATAATAA-ATATAGAATAAT
*
36445152 AAAATAAATAATA
1 -AACTAAATAATA
36445165 TAGAAATATA
Statistics
Matches: 86, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
42 8 0.09
43 27 0.31
44 5 0.06
45 16 0.19
46 5 0.06
47 12 0.14
48 11 0.13
49 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (43 bp):
AACTAAATAATAATAAATAGAAATATAATAAATATAGAATAAT
Found at i:36445105 original size:12 final size:12
Alignment explanation
Indices: 36445090--36445166 Score: 70
Period size: 12 Copynumber: 6.4 Consensus size: 12
36445080 AGAAATAAAT
36445090 ATATATATAATA
1 ATATATATAATA
*
36445102 ATATATAAAAATA
1 ATATAT-ATAATA
36445115 ATATATA-AATA
1 ATATATATAATA
36445126 GATA-ATATAATA
1 -ATATATATAATA
* *
36445138 ATAGATAGAATA
1 ATATATATAATA
*
36445150 ATA-AAATAAATA
1 ATATATAT-AATA
36445162 ATATA
1 ATATA
36445167 GAAATATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
11 12 0.22
12 31 0.56
13 12 0.22
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (12 bp):
ATATATATAATA
Found at i:36445135 original size:20 final size:20
Alignment explanation
Indices: 36445084--36445221 Score: 87
Period size: 20 Copynumber: 7.1 Consensus size: 20
36445074 CTAAATAGAA
*
36445084 ATAAATATAT-ATATAATA-
1 ATAAATAGATAATATAATAT
*
36445102 ATATATA-A-AA-ATAATAT
1 ATAAATAGATAATATAATAT
36445119 ATAAATAGATAATATAATA-
1 ATAAATAGATAATATAATAT
* * *
36445138 ATAGATAGAATAATAAAATAA
1 ATAAATAG-ATAATATAATAT
*
36445159 ATAATATAGA-AATATAGATTT
1 ATAA-ATAGATAATATA-ATAT
* *
36445180 ATAAATCGA-AATATATTAAT
1 ATAAATAGATAATATAAT-AT
*
36445200 ATAAATATAATAATATAA-AT
1 ATAAATA-GATAATATAATAT
36445220 AT
1 AT
36445222 TATTAATTAC
Statistics
Matches: 94, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
16 6 0.06
17 8 0.09
18 7 0.07
19 10 0.11
20 42 0.45
21 11 0.12
22 10 0.11
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (20 bp):
ATAAATAGATAATATAATAT
Found at i:36460086 original size:40 final size:40
Alignment explanation
Indices: 36460041--36460118 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
36460031 ATCTATGTCC
*
36460041 TATGTTATTGTCATTTTAAATGTGAACAAATTTTTAATCT
1 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
36460081 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAAT
1 TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAAT
36460119 TTTTTAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (40 bp):
TATGTTATTGTCATTTTAAACGTGAACAAATTTTTAATCT
Found at i:36460143 original size:45 final size:45
Alignment explanation
Indices: 36460091--36460181 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
36460081 TATGTTATTG
* *
36460091 TCATTTTAAACGTGAACAAATTTTTAATTTTTTAATTATCTTTTA
1 TCATTTTAAACGTGAACAAATTTTTAAATTTTCAATTATCTTTTA
*
36460136 TCATTTTAAACGTGGACAAATTTTTAAATTTTCAATTATCTTTTA
1 TCATTTTAAACGTGAACAAATTTTTAAATTTTCAATTATCTTTTA
36460181 T
1 T
36460182 GAAAAACAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (45 bp):
TCATTTTAAACGTGAACAAATTTTTAAATTTTCAATTATCTTTTA
Found at i:36467864 original size:3 final size:3
Alignment explanation
Indices: 36467856--36467893 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
36467846 ATAACCTGGA
*
36467856 TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
36467894 TTGCAGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:36469047 original size:20 final size:20
Alignment explanation
Indices: 36469017--36469054 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
36469007 ACTCCCTCAA
36469017 CCCCTAGAACTTTTTACTTTC
1 CCCCTAGAAC-TTTTACTTTC
36469038 CCCCTA-AACTTTTACTT
1 CCCCTAGAACTTTTACTT
36469055 CTCACATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.21, C:0.34, G:0.03, T:0.42
Consensus pattern (20 bp):
CCCCTAGAACTTTTACTTTC
Found at i:36483413 original size:79 final size:80
Alignment explanation
Indices: 36483245--36483429 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
36483235 GCTACTCGTT
* * *
36483245 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
36483309 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* ** *
36483326 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
* *
36483389 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
36483405 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
36483430 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 24 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:36483429 original size:40 final size:40
Alignment explanation
Indices: 36483226--36483429 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
36483216 CAGAATTTAA
** * *
36483226 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGAACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
36483266 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36483306 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36483345 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
36483385 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
36483425 CCGGA
1 CCGGA
36483430 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36491453 original size:39 final size:40
Alignment explanation
Indices: 36491339--36491523 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
36491329 GCTACTCGTT
*
36491339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
36491379 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
36491419 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * * *
36491458 CAAATGCCTTC-GGATCTTATTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
36491499 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36491524 CATCATTCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:36491507 original size:79 final size:80
Alignment explanation
Indices: 36491339--36491523 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
36491329 GCTACTCGTT
* *
36491339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
36491403 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
36491420 CAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTATTCCGG
1 CAAAGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
36491483 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
36491499 CAAAGCCTTCAGGACTTAGCCCGGA
1 CAAAGCCTTC-GGGCTTAGCCCGGA
36491524 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 27 0.30
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:36501206 original size:13 final size:13
Alignment explanation
Indices: 36501190--36501215 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36501180 CGGAGAGCCA
36501190 CAAAGGAACGAAG
1 CAAAGGAACGAAG
36501203 CAAAGGAACGAAG
1 CAAAGGAACGAAG
36501216 GAGCCCTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.31, T:0.00
Consensus pattern (13 bp):
CAAAGGAACGAAG
Found at i:36508261 original size:27 final size:27
Alignment explanation
Indices: 36508230--36508408 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
36508220 TTAGTTCAAC
*
36508230 AAATTACCAAAATACCCCTGAT-TTGTA
1 AAATTACCAAAATACCCCT-ATATGGTA
*
36508257 AAATTACTAAAATACCCCTATATGGTA
1 AAATTACCAAAATACCCCTATATGGTA
* * * *
36508284 GAATTA-CAGAAATACCCTTGTAGGGTA
1 AAATTACCA-AAATACCCCTATATGGTA
* * ** * *
36508311 GATTTACTGAAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTATATGGTA
* * * * *
36508338 GAATTACCGAAATACCCTTGTAGGGTA
1 AAATTACCAAAATACCCCTATATGGTA
* * *
36508365 GAATTACCAAAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTATATGGTA
* * *
36508392 GAATTACCGAGATACCC
1 AAATTACCAAAATACCC
36508409 TTGTGGGATG
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 128 0.98
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTATATGGTA
Found at i:36508424 original size:81 final size:80
Alignment explanation
Indices: 36508231--36508427 Score: 202
Period size: 81 Copynumber: 2.4 Consensus size: 80
36508221 TAGTTCAACA
* ** * *
36508231 AATTACCAAAATACCCCTG-ATTTGTAAAATTACTAAAATACCCCTATATGGTAGAATTACAGAA
1 AATTACCGAAATACCCCTGTA-GGGT-AAATTACCAAAATACCCCTATAGGGTAGAATTACAGAA
*
36508295 ATACCCTTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
* * * * *
36508312 ATTTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCA-AA
1 AATTACCGAAATACCCCTGTAGGGTA-AATTACCAAAATACCCCTATAGGGTAGAATTA-CAGAA
36508376 ATACCCCTGTAGGGTAG
64 ATACCCCTGTAGGGTAG
* *
36508393 AATTACCGAGATACCCTTGT-GGGATGAAATTACCA
1 AATTACCGAAATACCCCTGTAGGG-T-AAATTACCA
36508428 TTTTGCCCCT
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
80 4 0.04
81 87 0.92
82 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAGGGTAAATTACCAAAATACCCCTATAGGGTAGAATTACAGAAAT
ACCCCTGTAGGGTAG
Found at i:36508426 original size:27 final size:27
Alignment explanation
Indices: 36508266--36508412 Score: 204
Period size: 27 Copynumber: 5.4 Consensus size: 27
36508256 AAAATTACTA
* * * *
36508266 AAATACCCCTATATGGTAGAATTACAG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
36508293 AAATACCCTTGTAGGGTAGATTTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
36508320 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
36508347 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
36508374 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
36508401 AGATACCCTTGT
1 AAATACCCTTGT
36508413 GGGATGAAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:36508437 original size:54 final size:54
Alignment explanation
Indices: 36508258--36508412 Score: 238
Period size: 54 Copynumber: 2.9 Consensus size: 54
36508248 TGATTTGTAA
* * * *
36508258 AATTACTAAAATACCCCTATATGGTAGAATTACAGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
* **
36508312 ATTTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
*
36508366 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGT
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT
36508413 GGGATGAAAT
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
Found at i:36509170 original size:69 final size:69
Alignment explanation
Indices: 36509067--36509240 Score: 285
Period size: 69 Copynumber: 2.5 Consensus size: 69
36509057 GTTCTGGTAG
*
36509067 CCTCGCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTGGTGACTCCGTTACAATATCTG
1 CCTCGCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTGGTGACTCCGTCACAATATCTG
36509132 GCAA
66 GCAA
* * *
36509136 CCTCGCTGCAACCTGGTGGCCTCGCCACATATATATCTGTTTTGGTGACTTCGTCACAATATCTG
1 CCTCGCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTGGTGACTCCGTCACAATATCTG
*
36509201 GCAG
66 GCAA
* *
36509205 CCTCGCTGCAATCTGGTGGCTTTGCCACATATATAT
1 CCTCGCTGCAATCTGGTGGCCTCGCCACATATATAT
36509241 ATATATCTGT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 97 1.00
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.31
Consensus pattern (69 bp):
CCTCGCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTGGTGACTCCGTCACAATATCTG
GCAA
Found at i:36511394 original size:26 final size:26
Alignment explanation
Indices: 36511356--36511439 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
36511346 CCCTGTTTAG
* *
36511356 AATACTTTAGTTTACCAAATTACCAA
1 AATACTCTAGTTTACAAAATTACCAA
* *** *
36511382 AATACTCTGGTTTGTGAAATTGCCAA
1 AATACTCTAGTTTACAAAATTACCAA
* * *
36511408 AATACCCTCGATTAGCAAAATTACCAA
1 AATACTCTAGTTTA-CAAAATTACCAA
36511435 AATAC
1 AATAC
36511440 CCCTGATTTG
Statistics
Matches: 44, Mismatches: 13, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
26 30 0.68
27 14 0.32
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (26 bp):
AATACTCTAGTTTACAAAATTACCAA
Found at i:36511434 original size:27 final size:27
Alignment explanation
Indices: 36511372--36511468 Score: 99
Period size: 27 Copynumber: 3.6 Consensus size: 27
36511362 TTAGTTTACC
* * *
36511372 AAATTACCAAAATACTCT-GGTTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
36511398 AAATTGCCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
36511425 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
**
36511452 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
36511469 CTGTAAAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.29
27 41 0.71
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:36511469 original size:27 final size:27
Alignment explanation
Indices: 36511372--36511498 Score: 98
Period size: 27 Copynumber: 4.7 Consensus size: 27
36511362 TTAGTTTACC
* * * * *
36511372 AAATTACCAAAATA-CTCTGGTTTGTG
1 AAATTACCGAAATACCCCTGATTAGTA
* * *
36511398 AAATTGCCAAAATACCCTC-GATTAGCA
1 AAATTACCGAAATACCC-CTGATTAGTA
* *
36511425 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCGAAATACCCCTGATTAGTA
* *
36511452 AAATTACTGAAATACCCCTG-TAAAGTA
1 AAATTACCGAAATACCCCTGAT-TAGTA
*
36511479 GAATTACCGAAATACCCCTG
1 AAATTACCGAAATACCCCTG
36511499 TAAGGTAGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
26 15 0.18
27 66 0.80
28 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGATTAGTA
Found at i:36511499 original size:27 final size:27
Alignment explanation
Indices: 36511426--36511592 Score: 174
Period size: 27 Copynumber: 6.2 Consensus size: 27
36511416 CGATTAGCAA
** *
36511426 AATTACCAAAATACCCCTG-ATTTGTAA
1 AATTACCAAAATACCCCTGTA-AGGTAG
** *
36511453 AATTACTGAAATACCCCTGTAAAGTAG
1 AATTACCAAAATACCCCTGTAAGGTAG
*
36511480 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAAGGTAG
* * *
36511507 ATTTACTAAAATATCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAAGGTAG
* *
36511534 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAAGGTAG
* * * *
36511561 AAATACTAAAATCCCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAAGGTAG
36511588 AATTA
1 AATTA
36511593 TCGAGATACC
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 117 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAAGGTAG
Found at i:36511602 original size:54 final size:54
Alignment explanation
Indices: 36511456--36511617 Score: 191
Period size: 54 Copynumber: 3.0 Consensus size: 54
36511446 TTTGTAAAAT
* * * * **
36511456 TACTGAAATACCCCTGTAAAGTAGAATTACCGAAATACCCCTGTAAGGTAGATT
1 TACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
* *
36511510 TACTAAAATATCCCTGTAAGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAA
1 TACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
* * * * * *
36511564 TACTAAAATCCCCCTGTAGGGTAGAATTATCGAGATACCTTTGTGGGGTA-AAA
1 TACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
36511617 T
1 T
36511618 TACCATTTTG
Statistics
Matches: 92, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.04
54 88 0.96
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
TACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
Found at i:36518303 original size:20 final size:20
Alignment explanation
Indices: 36518278--36518324 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
36518268 AGCTTCTTCT
* *
36518278 TCTTCTTCTTTACTGCTACA
1 TCTTCTTCTTCACTACTACA
*
36518298 TCTTCTTCTTCACTACTGCA
1 TCTTCTTCTTCACTACTACA
36518318 TCTTCTT
1 TCTTCTT
36518325 TTTGCAGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.32, G:0.04, T:0.51
Consensus pattern (20 bp):
TCTTCTTCTTCACTACTACA
Found at i:36518324 original size:23 final size:22
Alignment explanation
Indices: 36518272--36518324 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
36518262 ACGGTAAGCT
**
36518272 TCTTCTTCTTCTTCTTTACTGC
1 TCTTCTTCTTCTTCACTACTGC
*
36518294 TACATCTTCTTCTTCACTACTGC
1 T-CTTCTTCTTCTTCACTACTGC
36518317 ATCTTCTT
1 -TCTTCTT
36518325 TTTGCAGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.11, C:0.32, G:0.04, T:0.53
Consensus pattern (22 bp):
TCTTCTTCTTCTTCACTACTGC
Found at i:36521419 original size:24 final size:21
Alignment explanation
Indices: 36521377--36521420 Score: 52
Period size: 24 Copynumber: 2.0 Consensus size: 21
36521367 TTATTGTTGT
*
36521377 AACTTTATATTATTTTTTATC
1 AACTTTATATTATTATTTATC
36521398 AACTTTATTATCTAATTATTTAT
1 AACTTTA-TAT-T-ATTATTTAT
36521421 TCTTATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 1 0.05
24 8 0.42
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
AACTTTATATTATTATTTATC
Found at i:36521747 original size:11 final size:11
Alignment explanation
Indices: 36521681--36521750 Score: 70
Period size: 11 Copynumber: 6.4 Consensus size: 11
36521671 TTCTCACTGC
36521681 TGCTG-TTTGG
1 TGCTGTTTTGG
* *
36521691 TGCTTTTTTTTG
1 TGC-TGTTTTGG
*
36521703 TGATGTTTTGG
1 TGCTGTTTTGG
* *
36521714 AGCTGTTTTGA
1 TGCTGTTTTGG
*
36521725 TGTTGTTTTGG
1 TGCTGTTTTGG
36521736 TGCTGTTTTGG
1 TGCTGTTTTGG
36521747 TGCT
1 TGCT
36521751 ACTTTTGTGG
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 3 0.07
11 37 0.80
12 6 0.13
ACGTcount: A:0.04, C:0.07, G:0.31, T:0.57
Consensus pattern (11 bp):
TGCTGTTTTGG
Found at i:36522368 original size:26 final size:25
Alignment explanation
Indices: 36522339--36522398 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
36522329 TTAAAAGTTT
36522339 ATAAAAATAGGGATAAATATATAAAA
1 ATAAAAATAGGGA-AAATATATAAAA
* * *
36522365 ATAAAATATATGTAAAATATCTAAAA
1 ATAAAA-ATAGGGAAAATATATAAAA
36522391 ATATAAAA
1 ATA-AAAA
36522399 AAATTATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.27
Consensus pattern (25 bp):
ATAAAAATAGGGAAAATATATAAAA
Found at i:36522793 original size:22 final size:22
Alignment explanation
Indices: 36522767--36522816 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
36522757 CCACTGTCGG
36522767 TTATTTTATTGCT-TTATTATT
1 TTATTTTATTGCTATTATTATT
*
36522788 ATTA-TTTATTTCTATTATTATT
1 -TTATTTTATTGCTATTATTATT
36522810 TT-TTTTA
1 TTATTTTA
36522817 CTAGTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (22 bp):
TTATTTTATTGCTATTATTATT
Found at i:36522826 original size:18 final size:19
Alignment explanation
Indices: 36522784--36522835 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
36522774 ATTGCTTTAT
*
36522784 TATTATTATTTATTTCTAT
1 TATTATTATTTATTTCTAG
36522803 TATTATT-TTT-TTTACTAG
1 TATTATTATTTATTT-CTAG
*
36522821 TATTATTAATTATTT
1 TATTATTATTTATTT
36522836 TTCTTTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 3 0.11
18 13 0.46
19 9 0.32
20 3 0.11
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTATTATTTATTTCTAG
Found at i:36523029 original size:19 final size:20
Alignment explanation
Indices: 36523005--36523043 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
36522995 ATTAAGTTAC
*
36523005 TTGTTATTTTTCTT-TATTA
1 TTGTTATTATTCTTATATTA
36523024 TTGTTATTATTCTTATATTA
1 TTGTTATTATTCTTATATTA
36523044 CATCTGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (20 bp):
TTGTTATTATTCTTATATTA
Found at i:36524466 original size:6 final size:6
Alignment explanation
Indices: 36524455--36524521 Score: 71
Period size: 6 Copynumber: 10.8 Consensus size: 6
36524445 CCATTTATCA
* * *
36524455 TTTATT TTTATT TTTAAT TTTATT CTATTATT TTTAGT TTTATT TCTATT
1 TTTATT TTTATT TTTATT TTTATT -T-TTATT TTTATT TTTATT TTTATT
* *
36524505 TTTATG TTTATT GTTAT
1 TTTATT TTTATT TTTAT
36524522 GATTTTAGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
6 43 0.86
7 2 0.04
8 5 0.10
ACGTcount: A:0.19, C:0.03, G:0.04, T:0.73
Consensus pattern (6 bp):
TTTATT
Found at i:36524487 original size:20 final size:21
Alignment explanation
Indices: 36524462--36524504 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
36524452 TCATTTATTT
36524462 TTATTTTTAATTTTA-TTCTA
1 TTATTTTTAATTTTATTTCTA
*
36524482 TTATTTTTAGTTTTATTTCTA
1 TTATTTTTAATTTTATTTCTA
36524503 TT
1 TT
36524505 TTTATGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (21 bp):
TTATTTTTAATTTTATTTCTA
Found at i:36526708 original size:46 final size:46
Alignment explanation
Indices: 36526658--36526829 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
36526648 TGGTTGAGCA
36526658 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
36526704 TCCGAACTCCTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
36526749 CATCCGAACTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
36526796 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
36526830 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 27 0.26
46 37 0.36
47 28 0.27
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:36526818 original size:92 final size:93
Alignment explanation
Indices: 36526655--36526824 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
36526645 GGATGGTTGA
* *
36526655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
36526720 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
36526748 GCATCCGAACTCGTTGAGTTGAGTCCGAG-TCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
36526812 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36526825 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 44 0.60
93 29 0.40
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCCTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36544223 original size:20 final size:20
Alignment explanation
Indices: 36544184--36544223 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
36544174 TTTGATTTAA
*
36544184 AATTTAAGAAAAATATAATT
1 AATTTAAGAAAAAAATAATT
36544204 AATTT-AGAAAAAAATGAATT
1 AATTTAAGAAAAAAAT-AATT
36544224 TTTTTAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (20 bp):
AATTTAAGAAAAAAATAATT
Found at i:36551984 original size:42 final size:43
Alignment explanation
Indices: 36551873--36552021 Score: 192
Period size: 43 Copynumber: 3.5 Consensus size: 43
36551863 ACAAAAGTCA
* * * * *
36551873 CTATAAAACATGACCTTTAACGGTGCTTTTCTAATAAACGCCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
** *
36551916 CTATAGAATGTGACCTTTAGCGGCGCTTTTCTTACAAACACCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
* *
36551959 CTATA-AACATGACCTTTAGTGGCGCTTTTCCTACAAACGCCG
1 CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
*
36552001 CTATATAACATGACCTTTAGC
1 CTATAGAACATGACCTTTAGC
36552022 AGCATTTTTC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 37 0.41
43 54 0.59
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
CTATAGAACATGACCTTTAGCGGCGCTTTTCTTACAAACGCCG
Found at i:36552031 original size:43 final size:42
Alignment explanation
Indices: 36551873--36552046 Score: 188
Period size: 43 Copynumber: 4.1 Consensus size: 42
36551863 ACAAAAGTCA
* * *
36551873 CTATAAAACATGACCTTTAACGGTGCTTTT-CTAATAAACGCCG
1 CTAT-AAACATGACCTTTAGCGGCGCTTTTCCT-ACAAACGCCG
** * *
36551916 CTATAGAATGTGACCTTTAGCGGCGCTTTTCTTACAAACACCG
1 CTATA-AACATGACCTTTAGCGGCGCTTTTCCTACAAACGCCG
*
36551959 CTATAAACATGACCTTTAGTGGCGCTTTTCCTACAAACGCCG
1 CTATAAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCCG
* ** * *
36552001 CTATATAACATGACCTTTAGCAGCATTTTTCCCAAAAACGCCG
1 CTATA-AACATGACCTTTAGCGGCGCTTTTCCTACAAACGCCG
36552044 CTA
1 CTA
36552047 AAGACCATAT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
42 38 0.35
43 71 0.65
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
CTATAAACATGACCTTTAGCGGCGCTTTTCCTACAAACGCCG
Found at i:36552031 original size:85 final size:86
Alignment explanation
Indices: 36551873--36552031 Score: 205
Period size: 85 Copynumber: 1.9 Consensus size: 86
36551863 ACAAAAGTCA
* * ** *
36551873 CTATAAAACATGACCTTTAACGGTGCTTTTCTAATAAACGCCGCTATAGAATGTGACCTTTAGCG
1 CTATAAAACATGACCTTTAACGGCGCTTTTCTAACAAACGCCGCTATAGAACATGACCTTTAGCA
*
36551938 GCGCTTTTCTTACAAACACCG
66 GCACTTTTCTTACAAACACCG
** *
36551959 CTAT-AAACATGACCTTTAGTGGCGCTTTTCCT-ACAAACGCCGCTATATAACATGACCTTTAGC
1 CTATAAAACATGACCTTTAACGGCGCTTTT-CTAACAAACGCCGCTATAGAACATGACCTTTAGC
*
36552022 AGCATTTTTC
65 AGCACTTTTC
36552032 CCAAAAACGC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 56 0.90
86 6 0.10
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (86 bp):
CTATAAAACATGACCTTTAACGGCGCTTTTCTAACAAACGCCGCTATAGAACATGACCTTTAGCA
GCACTTTTCTTACAAACACCG
Found at i:36552045 original size:85 final size:86
Alignment explanation
Indices: 36551831--36552046 Score: 199
Period size: 85 Copynumber: 2.5 Consensus size: 86
36551821 AAAAATGTCC
* * * *
36551831 CTATATAACATGACCTTTAG-TG-ATCTTTT-ACAACAAAAGTCACTATAAAACATGACCTTTAA
1 CTATATAACATGACCTTTAGCAGCAT-TTTTCACAA-AAACGCCGCTATAAAACATGACCTTTAA
* *
36551893 CGGTGCTTTTCTAATAAACGCCG
64 CGGCGCTTTTCTAACAAACGCCG
* ** * ** ** * * **
36551916 CTATAGAATGTGACCTTTAGCGGCGCTTTTCTTACAAACACCGCTAT-AAACATGACCTTTAGTG
1 CTATATAACATGACCTTTAGCAGCATTTTTCACAAAAACGCCGCTATAAAACATGACCTTTAACG
36551980 GCGCTTTTCCT-ACAAACGCCG
66 GCGCTTTT-CTAACAAACGCCG
*
36552001 CTATATAACATGACCTTTAGCAGCATTTTTCCCAAAAACGCCGCTA
1 CTATATAACATGACCTTTAGCAGCATTTTTCACAAAAACGCCGCTA
36552047 AAGACCATAT
Statistics
Matches: 100, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
85 84 0.84
86 15 0.15
87 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (86 bp):
CTATATAACATGACCTTTAGCAGCATTTTTCACAAAAACGCCGCTATAAAACATGACCTTTAACG
GCGCTTTTCTAACAAACGCCG
Found at i:36559531 original size:27 final size:26
Alignment explanation
Indices: 36559495--36559606 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
36559485 AGCATGGCTG
* *
36559495 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
36559521 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
36559549 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
36559576 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
36559603 CCAG
1 CCAG
36559607 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 54 0.71
28 17 0.22
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:36559554 original size:54 final size:54
Alignment explanation
Indices: 36559495--36559606 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
36559485 AGCATGGCTG
*
36559495 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
36559549 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
36559603 CCAG
1 CCAG
36559607 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:36573099 original size:16 final size:16
Alignment explanation
Indices: 36573078--36573148 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
36573068 GTTTGGTTCA
*
36573078 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
36573094 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
36573110 CTGTAATGAAACAGAG
1 CTGTAATGGAATAGAG
36573126 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
36573142 CTGTAAT
1 CTGTAAT
36573149 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.27
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:36573192 original size:46 final size:44
Alignment explanation
Indices: 36573130--36573223 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
36573120 ACAGAGCTGT
* *
36573130 AATGGAATAGAGCTGTAATCAGTAATTCA-ATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCATA-TATTTGGTTGAATGG
*
36573176 AATGGAATAGAACTGTAATAGTATTCTTATATTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATATATTTGGTTGAATGG
36573220 AATG
1 AATG
36573224 ATATTGTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 22 0.50
45 4 0.09
46 18 0.41
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATATATTTGGTTGAATGG
Found at i:36573408 original size:58 final size:58
Alignment explanation
Indices: 36573329--36573450 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 58
36573319 TTTTAATAAG
* * *
36573329 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAATCATATT-TTTACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAACAATTTAATAATATTCTTAACATA
* * *
36573387 ATTATTATTAAATATAATTTAATAAAATAATATACAATTTAATAATATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
36573445 ATTATT
1 ATTATT
36573451 TATGAATTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 23 0.40
58 34 0.60
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAACAATTTAATAATATTCTTAACATA
Found at i:36577272 original size:17 final size:18
Alignment explanation
Indices: 36577250--36577283 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36577240 TAACTAGACC
36577250 AATGATG-GGTTTGTTCA
1 AATGATGTGGTTTGTTCA
*
36577267 AATGATGTGTTTTGTTC
1 AATGATGTGGTTTGTTC
36577284 CATACGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.06, G:0.26, T:0.47
Consensus pattern (18 bp):
AATGATGTGGTTTGTTCA
Done.