Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 114 of 320
Found at i:37008063 original size:80 final size:80
Alignment explanation
Indices: 37007926--37008186 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
37007916 TTGAATGCTG
* * * * * **
37007926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
37007989 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
37008006 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
37008071 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * * *
37008086 TCCGAGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
37008150 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
37008165 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
37008187 CTTGAACGAG
Statistics
Matches: 155, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
79 33 0.21
80 116 0.75
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:37011206 original size:22 final size:22
Alignment explanation
Indices: 37011152--37011206 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
37011142 CACTAAGTCA
* *
37011152 ACAGGACGACTTAACACCATAG
1 ACAGGACGGCTCAACACCATAG
*
37011174 ACAGGACGGCTCAACACCCTAG
1 ACAGGACGGCTCAACACCATAG
*
37011196 ACAGGATGGCT
1 ACAGGACGGCT
37011207 AAAGGTCGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.35, C:0.29, G:0.24, T:0.13
Consensus pattern (22 bp):
ACAGGACGGCTCAACACCATAG
Found at i:37011513 original size:27 final size:28
Alignment explanation
Indices: 37011456--37011511 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
37011446 ATCGTCATTC
*
37011456 TACCATACAAGGGTATTACGGTAATTTT
1 TACCATACAAGGGCATTACGGTAATTTT
* * *
37011484 TACCATATAGGGGCATTATGGTAATTTT
1 TACCATACAAGGGCATTACGGTAATTTT
37011512 ACAAACCAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (28 bp):
TACCATACAAGGGCATTACGGTAATTTT
Found at i:37011770 original size:19 final size:19
Alignment explanation
Indices: 37011735--37011772 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37011725 CCGTGTGGGC
*
37011735 CACGAGCCCATTGGGCCCA
1 CACGAGCCCATTAGGCCCA
37011754 CACG-GCCCATCTAGGCCCA
1 CACGAGCCCAT-TAGGCCCA
37011773 ACGTGGCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.45, G:0.24, T:0.11
Consensus pattern (19 bp):
CACGAGCCCATTAGGCCCA
Found at i:37014723 original size:28 final size:28
Alignment explanation
Indices: 37014680--37014733 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
37014670 CGTCATTCTA
*
37014680 CCATACAGGGGTATTACGGTAATTTTTG
1 CCATACAGGGGCATTACGGTAATTTTTG
* *
37014708 CCATATAGGGGCATTATGGTAATTTT
1 CCATACAGGGGCATTACGGTAATTTT
37014734 ACAAATCGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (28 bp):
CCATACAGGGGCATTACGGTAATTTTTG
Found at i:37019336 original size:33 final size:33
Alignment explanation
Indices: 37019299--37019370 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
37019289 TCTAAGAAGT
37019299 TGTGAAGTTCATACATAAGATTATGATTGAAAA
1 TGTGAAGTTCATACATAAGATTATGATTGAAAA
37019332 TGTGAAGTTCATACATAAGATTATGATTGAAAA
1 TGTGAAGTTCATACATAAGATTATGATTGAAAA
37019365 TGTGAA
1 TGTGAA
37019371 CTGTTAGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (33 bp):
TGTGAAGTTCATACATAAGATTATGATTGAAAA
Found at i:37028411 original size:27 final size:26
Alignment explanation
Indices: 37028345--37028540 Score: 103
Period size: 27 Copynumber: 7.3 Consensus size: 26
37028335 GGTCGTTAAG
*
37028345 ACCCCTAATTTGTAAAATTACTAAAAT
1 ACCCCTAATTTGTAAAATTAC-GAAAT
**** *
37028372 ACCCCCGGGTTGTAAAAATATCGAAAT
1 ACCCCTAATTTGTAAAATTA-CGAAAT
*
37028399 ACCCCTAATTTGTGAAATTACCGAAAT
1 ACCCCTAATTTGTAAAATTA-CGAAAT
* ** *
37028426 A-CCCTCAATTTTTGTAATTATCAAAAT
1 ACCCCT-AATTTGTAAAATTA-CGAAAT
** *
37028453 ACCCCCGACTTGTAAAATTACTGAAAT
1 ACCCCTAATTTGTAAAATTAC-GAAAT
* **
37028480 A-CCTTCGGTTTGTAAAATTACCGAAAT
1 ACCCCT-AATTTGTAAAATTA-CGAAAT
*
37028507 A-CCCT-TTTAGTGTAAAATTATCGAAAT
1 ACCCCTAATT--TGTAAAATTA-CGAAAT
37028534 ACCCCTA
1 ACCCCTA
37028541 TAAGGTAAAA
Statistics
Matches: 128, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
25 2 0.02
26 7 0.05
27 110 0.86
28 9 0.07
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (26 bp):
ACCCCTAATTTGTAAAATTACGAAAT
Found at i:37028499 original size:54 final size:54
Alignment explanation
Indices: 37028345--37028510 Score: 161
Period size: 54 Copynumber: 3.1 Consensus size: 54
37028335 GGTCGTTAAG
* * * * * *
37028345 ACCCCTAATTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAAATATCGAAAT
1 ACCCCCAACTTGTAAAATTACTGAAATACCCTCGGTTTGTAAAATTATCGAAAT
* * * * ** * ** *
37028399 ACCCCTAATTTGTGAAATTACCGAAATACCCTCAATTTTTGTAATTATCAAAAT
1 ACCCCCAACTTGTAAAATTACTGAAATACCCTCGGTTTGTAAAATTATCGAAAT
* * *
37028453 ACCCCCGACTTGTAAAATTACTGAAATACCTTCGGTTTGTAAAATTACCGAAAT
1 ACCCCCAACTTGTAAAATTACTGAAATACCCTCGGTTTGTAAAATTATCGAAAT
37028507 ACCC
1 ACCC
37028511 TTTTAGTGTA
Statistics
Matches: 87, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 87 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.30
Consensus pattern (54 bp):
ACCCCCAACTTGTAAAATTACTGAAATACCCTCGGTTTGTAAAATTATCGAAAT
Found at i:37028526 original size:81 final size:81
Alignment explanation
Indices: 37028347--37028538 Score: 191
Period size: 81 Copynumber: 2.4 Consensus size: 81
37028337 TCGTTAAGAC
* **
37028347 CCCTAATT-TGTAAAATTA-CTAAAATACCCCCGGGTTGTAAAAATATCGAAATACCCCTAATTT
1 CCCTATTTGTGTAAAATTATC-AAAATACCCCCGACTTGTAAAAATATCGAAATACCCCTAATTT
*
37028410 GTGAAATTACCGAAATA
65 GTAAAATTACCGAAATA
* * * **
37028427 CCCTCAATTTTTGT--AATTATCAAAATACCCCCGACTTGTAAAATTA-CTGAAATA-CCTTCGG
1 CCCT--ATTTGTGTAAAATTATCAAAATACCCCCGACTTGTAAAAATATC-GAAATACCCCT-AA
37028488 TTTGTAAAATTACCGAAATA
62 TTTGTAAAATTACCGAAATA
*
37028508 CCCT-TTTAGTGTAAAATTATCGAAATACCCC
1 CCCTATTT-GTGTAAAATTATCAAAATACCCC
37028539 TATAAGGTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 17
0.77 0.08 0.14
Matches are distributed among these distances:
78 3 0.03
79 3 0.03
80 8 0.09
81 72 0.77
82 4 0.04
83 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
CCCTATTTGTGTAAAATTATCAAAATACCCCCGACTTGTAAAAATATCGAAATACCCCTAATTTG
TAAAATTACCGAAATA
Found at i:37028548 original size:27 final size:27
Alignment explanation
Indices: 37028490--37028551 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
37028480 ACCTTCGGTT
* *
37028490 TGTAAAATTACCGAAATACCCTTTTAG
1 TGTAAAATTACCGAAATACCCTATAAG
*
37028517 TGTAAAATTATCGAAATACCCCTATAAG
1 TGTAAAATTACCGAAATA-CCCTATAAG
37028545 -GTAAAAT
1 TGTAAAAT
37028552 GATTGTTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTATAAG
Found at i:37032864 original size:27 final size:27
Alignment explanation
Indices: 37032813--37032866 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
37032803 TACGCTACAA
37032813 GGGTATTTCGGTAATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
*
37032840 GGGTATTTCGGTCATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
37032867 AGGTCTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTAG
Found at i:37033234 original size:18 final size:18
Alignment explanation
Indices: 37033186--37033236 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
37033176 GGGAAATTTA
37033186 CCCATACGAGCCCA-TAGG
1 CCCATACGA-CCCATTAGG
* *
37033204 CCTATTA-GGCCCATTAGG
1 CCCA-TACGACCCATTAGG
37033222 CCCATACGACCCATT
1 CCCATACGACCCATT
37033237 TAACCCAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 2 0.08
ACGTcount: A:0.25, C:0.37, G:0.18, T:0.20
Consensus pattern (18 bp):
CCCATACGACCCATTAGG
Found at i:37037042 original size:34 final size:35
Alignment explanation
Indices: 37037004--37037078 Score: 111
Period size: 34 Copynumber: 2.2 Consensus size: 35
37036994 CCTTTTCCAG
*
37037004 TAACAGTAG-CAGTCTGGGCCTTAGCCCATTTCAA
1 TAACAGTAGACAGTCTAGGCCTTAGCCCATTTCAA
*
37037038 TAACAGT-GACAGTCTAGGCCTTAGCCCATTTCAG
1 TAACAGTAGACAGTCTAGGCCTTAGCCCATTTCAA
37037072 T-ACAGTA
1 TAACAGTA
37037079 TGCAAGCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 6 0.16
34 31 0.84
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (35 bp):
TAACAGTAGACAGTCTAGGCCTTAGCCCATTTCAA
Found at i:37039914 original size:38 final size:38
Alignment explanation
Indices: 37039863--37039941 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
37039853 TCAAACGGGG
37039863 CTTGGTAACACATACAATATAACAATAAGACATTTATA
1 CTTGGTAACACATACAATATAACAATAAGACATTTATA
37039901 CTTGGTAACACATACAATATAACAATAAGACATTTATA
1 CTTGGTAACACATACAATATAACAATAAGACATTTATA
37039939 CTT
1 CTT
37039942 TAAATATCTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (38 bp):
CTTGGTAACACATACAATATAACAATAAGACATTTATA
Found at i:37039957 original size:20 final size:20
Alignment explanation
Indices: 37039934--37039997 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
37039924 AATAAGACAT
37039934 TTATACTTTAAATATCTCAA
1 TTATACTTTAAATATCTCAA
* ***
37039954 TTATAAAC-AT-AATAAGAC-A
1 TTAT--ACTTTAAATATCTCAA
37039973 TTATACTTTAAATATCTCAA
1 TTATACTTTAAATATCTCAA
37039993 TTATA
1 TTATA
37039998 AACATTCTTT
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 10 0.32
20 15 0.48
21 1 0.03
22 2 0.06
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (20 bp):
TTATACTTTAAATATCTCAA
Found at i:37039983 original size:39 final size:40
Alignment explanation
Indices: 37039924--37040002 Score: 151
Period size: 39 Copynumber: 2.0 Consensus size: 40
37039914 ACAATATAAC
37039924 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
1 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
37039964 AATAAGACA-TTATACTTTAAATATCTCAATTATAAACAT
1 AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
37040003 TCTTTTCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
39 30 0.77
40 9 0.23
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.37
Consensus pattern (40 bp):
AATAAGACATTTATACTTTAAATATCTCAATTATAAACAT
Found at i:37043329 original size:27 final size:27
Alignment explanation
Indices: 37043299--37043476 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
37043289 ATATTGAGCC
* * *
37043299 CGCACACTCAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * * *
37043326 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
37043353 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
** * *
37043381 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
37043408 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
37043435 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
37043462 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37043477 GTACAATTTA
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 101 0.80
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:37043438 original size:82 final size:81
Alignment explanation
Indices: 37043320--37043475 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
37043310 TGCTATATAT
* * *
37043320 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
37043385 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37043402 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
37043466 CACTTAGTGC
65 CACTTAGTGC
37043476 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37070158 original size:43 final size:43
Alignment explanation
Indices: 37070110--37070221 Score: 206
Period size: 43 Copynumber: 2.6 Consensus size: 43
37070100 CCGGCATTAC
*
37070110 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
37070153 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
37070196 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
37070222 TAATACCAGC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.29, C:0.32, G:0.27, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:37070268 original size:38 final size:40
Alignment explanation
Indices: 37070225--37070299 Score: 109
Period size: 38 Copynumber: 1.9 Consensus size: 40
37070215 CCGAATATAA
* *
37070225 TACCAGCACTAGGCCTGCGGG-ATTTAA-CCCGGATATTT
1 TACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATTT
*
37070263 TACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 TACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATA
37070300 CACGTCAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 19 0.59
39 5 0.16
40 8 0.25
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATTT
Found at i:37073850 original size:64 final size:64
Alignment explanation
Indices: 37073769--37073952 Score: 210
Period size: 67 Copynumber: 2.8 Consensus size: 64
37073759 AGACATTATG
* * *
37073769 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
37073833 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37073898 AA
63 AA
* * * *
37073900 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
37073953 CGAACTATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 22 0.22
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37082453 original size:42 final size:42
Alignment explanation
Indices: 37082406--37082558 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 42
37082396 TAAGTTTACG
* * *
37082406 TGTAAGACCATATCTGGGATATAGCATCGTTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATCA
* * *
37082448 TGTAAGACCATGTCTAGGG-CATGGCATCGATATGAGA-ATCG
1 TGTAAGACCATATCT-GGGATATGGCATCGATATGAGATATCA
* * * * ** **
37082489 TGTCAGACCATAGCTAGGCTAATGGCATTAATATGAGATCCCA
1 TGTAAGACCATATCTGGGAT-ATGGCATCGATATGAGATATCA
*
37082532 TGTAAGACCATATCTGCGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
37082559 TGGTGTGATT
Statistics
Matches: 86, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
40 2 0.02
41 14 0.16
42 51 0.59
43 19 0.22
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATATCA
Found at i:37083742 original size:50 final size:51
Alignment explanation
Indices: 37083633--37083754 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 51
37083623 TCAAATCTCT
* ** * * * **
37083633 AAGAATATAAAACCATATCTTCTAAGATTACCTATCTTATCTAAGATATGT
1 AAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATATCC
** *
37083684 AATCTTAT-AAATAATATCTTATAAGATTACATATCATATCTAAGATCTCC
1 AAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATATCC
*
37083734 AAGATTATAAAATCATATCTT
1 AAGATTATAAAATAATATCTT
37083755 TCAAGATCAT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 40 0.71
51 16 0.29
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.37
Consensus pattern (51 bp):
AAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATATCC
Found at i:37088823 original size:51 final size:51
Alignment explanation
Indices: 37088760--37088885 Score: 171
Period size: 51 Copynumber: 2.5 Consensus size: 51
37088750 CAATCAAATC
* * * *
37088760 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
37088811 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
37088862 TCTAAGATTATAAAATCATATCTT
1 TCTAAGATTATAAAATCATATCTT
37088886 TCAAGATCAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:37093200 original size:26 final size:26
Alignment explanation
Indices: 37093171--37093223 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37093161 ATATATAAGA
37093171 TAATATGATATTGCCATAATCATGAC
1 TAATATGATATTGCCATAATCATGAC
37093197 TAATATGATATTGCCATAATCATGAC
1 TAATATGATATTGCCATAATCATGAC
37093223 T
1 T
37093224 TGTTTGAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (26 bp):
TAATATGATATTGCCATAATCATGAC
Found at i:37094116 original size:23 final size:23
Alignment explanation
Indices: 37094051--37094121 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
37094041 CGTTGGAGTG
* *
37094051 TACCATTTTAGCTC-ATATGAGCT
1 TACCGTTTCAGCTCAATA-GAGCT
* **
37094074 TACTGTTTCAGCTCGTTAGAGCT
1 TACCGTTTCAGCTCAATAGAGCT
*
37094097 TACCGTTTCAGCTTAATAGAGCT
1 TACCGTTTCAGCTCAATAGAGCT
37094120 TA
1 TA
37094122 TTATCCATCA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 37 0.95
24 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (23 bp):
TACCGTTTCAGCTCAATAGAGCT
Found at i:37094119 original size:46 final size:46
Alignment explanation
Indices: 37094011--37094121 Score: 109
Period size: 46 Copynumber: 2.4 Consensus size: 46
37094001 TACCAATATA
* * *
37094011 TCAGCTCATAAGAGCTTATTGTTTTCACCTCGTTGGAGTGTACCATT
1 TCAGCTAAT-AGAGCTTACTGTTTTCACCTCGTTAGAGTGTACCATT
* * * *
37094058 TTAGCTCATATGAGCTTACTG-TTTCAGCTCGTTAGAGCT-TACCGTT
1 TCAGCTAATA-GAGCTTACTGTTTTCACCTCGTTAGAG-TGTACCATT
37094104 TCAGCTTAATAGAGCTTA
1 TCAGC-TAATAGAGCTTA
37094122 TTATCCATCA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
46 32 0.59
47 22 0.41
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (46 bp):
TCAGCTAATAGAGCTTACTGTTTTCACCTCGTTAGAGTGTACCATT
Found at i:37095538 original size:16 final size:17
Alignment explanation
Indices: 37095507--37095540 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37095497 AGGGACAAAT
*
37095507 TGATTGATATGGATTGA
1 TGATTGATATGAATTGA
37095524 TGATT-ATATGAATTGA
1 TGATTGATATGAATTGA
37095540 T
1 T
37095541 CAAATGTATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (17 bp):
TGATTGATATGAATTGA
Found at i:37102335 original size:30 final size:29
Alignment explanation
Indices: 37102299--37102355 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
37102289 ATAGTATCGT
*
37102299 ATCTTGGGTTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
37102329 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
37102356 TGTTATCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.11, C:0.16, G:0.18, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:37108808 original size:23 final size:23
Alignment explanation
Indices: 37108782--37108846 Score: 96
Period size: 23 Copynumber: 2.8 Consensus size: 23
37108772 CAGATTGTTG
*
37108782 GAGCTTACCGTTTCAGCTCGT-A
1 GAGCTTACTGTTTCAGCTCGTCA
37108804 TGAGCTTACTGTTTCAGCTCGTCA
1 -GAGCTTACTGTTTCAGCTCGTCA
*
37108828 CAGCTTACTGTTTCAGCTC
1 GAGCTTACTGTTTCAGCTC
37108847 TATATAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
23 38 0.97
24 1 0.03
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCGTCA
Found at i:37108858 original size:23 final size:24
Alignment explanation
Indices: 37108783--37108861 Score: 92
Period size: 23 Copynumber: 3.4 Consensus size: 24
37108773 AGATTGTTGG
* *
37108783 AGCTTACCGTTTCAGCTCGTAT-G
1 AGCTTACTGTTTCAGCTCGTATAC
*
37108806 AGCTTACTGTTTCAGCTCGT-CAC
1 AGCTTACTGTTTCAGCTCGTATAC
*
37108829 AGCTTACTGTTTCAGCTC-TATAT
1 AGCTTACTGTTTCAGCTCGTATAC
*
37108852 AGTTTACTGT
1 AGCTTACTGT
37108862 CCATCAGCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
22 1 0.02
23 47 0.98
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (24 bp):
AGCTTACTGTTTCAGCTCGTATAC
Found at i:37109167 original size:38 final size:38
Alignment explanation
Indices: 37109125--37109202 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
37109115 TGATGTATGA
37109125 AATTAAGATAAAGGTTGATTCTATGTATTTATGAGACT
1 AATTAAGATAAAGGTTGATTCTATGTATTTATGAGACT
37109163 AATTAAGATAAAGGTTGATTCTATGTATTTATGAGACT
1 AATTAAGATAAAGGTTGATTCTATGTATTTATGAGACT
37109201 AA
1 AA
37109203 CATATTGATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (38 bp):
AATTAAGATAAAGGTTGATTCTATGTATTTATGAGACT
Found at i:37112389 original size:47 final size:47
Alignment explanation
Indices: 37112330--37112723 Score: 628
Period size: 47 Copynumber: 8.4 Consensus size: 47
37112320 GATGTACAAG
* * *
37112330 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
37112377 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
37112424 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37112471 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
37112518 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37112565 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
37112612 GTGTATATATGAGATAAGACCTG-ATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCC-GAATGGCCAATGTGATGAATGTGAAA
*
37112659 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37112706 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
37112724 TCCCGAAGGG
Statistics
Matches: 320, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 318 0.99
48 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:37114766 original size:55 final size:55
Alignment explanation
Indices: 37114678--37114783 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
37114668 TTAACTCTGG
* *
37114678 TAATGCTCCGTAACCCTATTCCAGCATTGAATAC-ATGTGAGAGGTGTTACACCGA
1 TAATGCTCCGTAACCCTATTCCAGCATTAAATACGA-GTGAGAGGTGCTACACCGA
* ** *
37114733 TAATGCTCCGTAACCCTATTCCGGTGTTAAATACGAGTGAGGGGTGCTACA
1 TAATGCTCCGTAACCCTATTCCAGCATTAAATACGAGTGAGAGGTGCTACA
37114784 AGCTAGTTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 43 0.98
56 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (55 bp):
TAATGCTCCGTAACCCTATTCCAGCATTAAATACGAGTGAGAGGTGCTACACCGA
Found at i:37118893 original size:17 final size:17
Alignment explanation
Indices: 37118871--37118904 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37118861 TACTAGACAA
37118871 CCCAATATTCTAAAGTG
1 CCCAATATTCTAAAGTG
*
37118888 CCCAATATTCTGAAGTG
1 CCCAATATTCTAAAGTG
37118905 ACTTAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (17 bp):
CCCAATATTCTAAAGTG
Found at i:37125109 original size:59 final size:60
Alignment explanation
Indices: 37125037--37125167 Score: 219
Period size: 59 Copynumber: 2.2 Consensus size: 60
37125027 TTGTACATTT
* *
37125037 ATTTCTTTTGAGTACATATGCTCTTTTTTTATTGCACGAGAATTTTACTATATGTACTAA
1 ATTTCTTTTGAGTACATATGCTCTTTTTTTATTACACGAGAATTTTACTATATGTACAAA
* *
37125097 ATTT-TTTTGAGTACATATGCTCTTTTTTTATTACATGAGCATTTTACTATATGTACAAA
1 ATTTCTTTTGAGTACATATGCTCTTTTTTTATTACACGAGAATTTTACTATATGTACAAA
37125156 ATTTCTTTTGAG
1 ATTTCTTTTGAG
37125168 CAATTGATAC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
59 55 0.83
60 11 0.17
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.50
Consensus pattern (60 bp):
ATTTCTTTTGAGTACATATGCTCTTTTTTTATTACACGAGAATTTTACTATATGTACAAA
Found at i:37148435 original size:28 final size:28
Alignment explanation
Indices: 37148388--37148507 Score: 168
Period size: 28 Copynumber: 4.3 Consensus size: 28
37148378 TGGGAAGTAG
* *
37148388 TTGGGCCTGATAGGCTATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
37148416 TTGGGTCTGATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
37148444 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * * *
37148472 CTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
37148500 TTGGGCCT
1 TTGGGCCT
37148508 AAAGGGGCCA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:37148854 original size:27 final size:27
Alignment explanation
Indices: 37148824--37149245 Score: 430
Period size: 27 Copynumber: 15.7 Consensus size: 27
37148814 TAATAAAGAG
37148824 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
37148851 AAATTACTGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
37148878 AAATTA-TCGAAACACCCTCGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
37148905 AAATTACCGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
37148932 AAATTA-TCGAAATACCCTCGATTT-TG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
37148958 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
37148985 AAATTACCGAAATACCCTTGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
37149012 AAATTA-TCAAAACACCCTCCACTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
37149039 AAATTACTGAAACATCCTCAATTTTTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
37149066 AATTTAC-GAAAACACCCTCGATTTGTA
1 AAATTACTG-AAATACCCTCGATTTGTA
* *
37149093 AAACTACCT-AAATACCCTCAATTTGTA
1 AAATTA-CTGAAATACCCTCGATTTGTA
*
37149120 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
37149147 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
37149174 AAATTA-TCGAAACACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
37149201 AAATTA-TCGAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
37149228 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
37149246 TGTAGTGTAA
Statistics
Matches: 329, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
26 26 0.08
27 301 0.91
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:37149241 original size:81 final size:80
Alignment explanation
Indices: 37148824--37149271 Score: 483
Period size: 81 Copynumber: 5.5 Consensus size: 80
37148814 TAATAAAGAG
* * * *
37148824 AAATTACTGAAATACCCTCGATTTGTAAAATTA-CTGAAATACCCCCGATTTGTGAAATTATCGA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCAATTTGTAAAATTA-CGA
* *
37148888 AACACCCTCGATTTATA
64 AATACCCTCGATTTGTA
* * * *
37148905 AAATTACCGAAATACCCCCGATTTGTAAAATTATCGAAATACCCTCGATTT-TGAAATTACTAAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTAC-GAA
37148969 ATACCCTCGATTTGTA
65 ATACCCTCGATTTGTA
* * * * * *
37148985 AAATTACCGAAATACCCTTGATTTGTGAAATTATCAAAACACCCTCCACTTGTAAAATTACTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTAC-GAA
* * * *
37149050 ACATCCTCAATTTTTA
65 ATACCCTCGATTTGTA
* * * * *
37149066 AATTTA-CGAAAACACCCTCGATTTGTAAAACTACCTAAATACCCTCAATTTGTAAAATTACCGA
1 AAATTACCG-AAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTA-CGA
37149130 AATACCCTCGATTTGTA
64 AATACCCTCGATTTGTA
* *
37149147 AAATTACCAAAATACCCTCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTA-CGAA
* *
37149212 ATACCCTTG-TAGTGTA
65 ATACCCTCGAT-TTGTA
* * * *
37149228 AAATTACCGAAATACCCTTG-TAGTGTAAAATGATCGACATACCC
1 AAATTACCGAAATACCCTCGAT-TTGTAAAATTATCGAAATACCC
37149272 CTGTAGGGTA
Statistics
Matches: 310, Mismatches: 49, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.00
80 72 0.23
81 234 0.75
82 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACGAAA
TACCCTCGATTTGTA
Found at i:37149286 original size:27 final size:27
Alignment explanation
Indices: 37149197--37149287 Score: 128
Period size: 27 Copynumber: 3.4 Consensus size: 27
37149187 ACCCTCAATT
*
37149197 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* *
37149224 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* *
37149251 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
*
37149278 GGTAAAATGA
1 TGTAAAATGA
37149288 CTATTTTGCC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (27 bp):
TGTAAAATGATCGAAATACCCTTGTAG
Found at i:37164450 original size:48 final size:48
Alignment explanation
Indices: 37164389--37164758 Score: 259
Period size: 46 Copynumber: 7.8 Consensus size: 48
37164379 CGGCCACATT
*
37164389 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
* **
37164437 ATGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
* * *
37164483 ATGTA-AGCCAGTGTAAGA-CATGTCTGGGACAT-ACATCGGC-TATGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-TGAG
* * * * * *
37164529 ATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGTATCAGTA-CG-T
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
* * * ** *
37164573 AT-AGAGCTATCAGTGTAAGACCATGTCTAGGACATGGCATCGGTACGGAT
1 ATGAGAGC--T-AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
* * *
37164623 ATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTTGATT
1 A--TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGA-G
* * * * *
37164674 TTGATAG-TCAATGTAAGACCATATTTGGGACATGGCATC-G-ACTT-A-
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCA-TTGAG
* *
37164719 ATGGATGAGCCAGTGTAAGACGATGTCTGGGACATGGCAT
1 AT-GA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
37164759 TGGCATTATA
Statistics
Matches: 256, Mismatches: 44, Indels: 45
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 18 0.07
46 57 0.22
47 43 0.17
48 52 0.20
49 32 0.12
50 33 0.13
51 2 0.01
52 1 0.00
53 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAG
Found at i:37164496 original size:46 final size:46
Alignment explanation
Indices: 37164352--37164560 Score: 210
Period size: 46 Copynumber: 4.5 Consensus size: 46
37164342 TTTGTGTGCT
* * * * **
37164352 AGTGTCAGACATGTCTAGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGAGCC
* ** *
37164398 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATGAGAGCC
37164446 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATG-AGAGCC
* * * * *
37164492 AGTGTAAGACATGTCTGGGACATACATC-GGCT-ATGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGA-GAGCC
37164536 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
37164561 GTATCAGTAC
Statistics
Matches: 137, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 14 0.10
45 17 0.12
46 52 0.38
47 28 0.20
48 24 0.18
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATGAGAGCC
Found at i:37166285 original size:46 final size:45
Alignment explanation
Indices: 37166089--37166303 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 45
37166079 GATTATTGTG
* *
37166089 AGCCAGTGTAAGACATGACTGGGACATGCATCAGCCACATCATGA-G-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--GA-GACGT
* *
37166135 AGCCAGTGTAAGACCATGTATGGGACATGGCATCAG-CATCAAGACG-
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-CGAGACGT
* * * **
37166181 AGTGCTAGTGTAAGACATGTCTGGGGCATGCATCGGCCGTGAGACGT
1 A--GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGT
* *
37166228 AAGCCTA-TGTAAGACATGTCTGGGACATGCATCAGCTACGAGATGAT
1 -AGCC-AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACG-T
* * *
37166275 AGTCAGTGTAAGACCATGTATGGGGCATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATG
37166304 GAATTGACAT
Statistics
Matches: 136, Mismatches: 20, Indels: 25
0.75 0.11 0.14
Matches are distributed among these distances:
45 3 0.02
46 71 0.52
47 42 0.31
48 20 0.15
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACGT
Found at i:37166342 original size:140 final size:141
Alignment explanation
Indices: 37166095--37166356 Score: 336
Period size: 140 Copynumber: 1.9 Consensus size: 141
37166085 TGTGAGCCAG
37166095 TGTAAGACATGACTGGGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCATGTATGGGA
1 TGTAAGACATGACTGGGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCATGTATGGGA
* * *
37166160 CATGGCATCAGCATCAAGACGAGTGCTAGTGTAAGACATGTCTGGGGCAT-GCATCGGCCGTGAG
66 CATGGAATCAGCATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCGTGAG
37166224 ACGTAAGCCTA
131 ACGTAAGCCTA
* * * * *
37166235 TGTAAGACATGTCTGGGACATGCATCAGCTACGA-GATGATAGTCAGTGTAAGACCATGTATGGG
1 TGTAAGACATGACTGGGACATGCATCAGCCAC-ATCATGAGAGCCAGTGTAAGACCATGTATGGG
* * * * *
37166299 GCATGGAAT-TGACAT-GAGA-TATGAGCTAGTGTAAGACTGTGTCTGGGACATGGCATCG
65 ACATGGAATCAG-CATCAAGACGA-GAGCTAGTGTAAGAC-ATGTCTGGGACATGGCATCG
37166357 ACACCTTACC
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 18 0.17
140 78 0.75
141 7 0.07
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (141 bp):
TGTAAGACATGACTGGGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACCATGTATGGGA
CATGGAATCAGCATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCGTGAG
ACGTAAGCCTA
Found at i:37171659 original size:13 final size:13
Alignment explanation
Indices: 37171641--37171673 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
37171631 GCCACACAGT
37171641 CGTGTGATACGGC
1 CGTGTGATACGGC
37171654 CGTGTGATACGGC
1 CGTGTGATACGGC
*
37171667 TGTGTGA
1 CGTGTGA
37171674 CCCTAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.15, C:0.18, G:0.39, T:0.27
Consensus pattern (13 bp):
CGTGTGATACGGC
Found at i:37182152 original size:42 final size:42
Alignment explanation
Indices: 37182080--37182171 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
37182070 TTACACATAG
* ** *
37182080 GCCCATTTCAATATCACATGTAATGTCAATGCATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
37182122 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37182164 GCCCATTT
1 GCCCATTT
37182172 GGAGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:37182381 original size:26 final size:26
Alignment explanation
Indices: 37182304--37182465 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
37182294 CTGGAGGCCT
37182304 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* **
37182328 AGCCCTTTCCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
37182353 AGCCATTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
37182379 AGCCCTTTTCGGTAAACTGGAGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
37182405 AGCCCTTTTCAATAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
37182431 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
37182457 AGCCCTTTT
1 AGCCCTTTT
37182466 GCACTTCTTC
Statistics
Matches: 119, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
23 4 0.03
24 5 0.04
25 31 0.26
26 79 0.66
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:37182544 original size:20 final size:20
Alignment explanation
Indices: 37182515--37182601 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
37182505 TTATGAATAC
37182515 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
37182535 ATCATATGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
37182555 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
37182575 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
37182595 ATCATGT
1 ATCATGT
37182602 ATATTATATC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:37183370 original size:27 final size:27
Alignment explanation
Indices: 37183309--37183372 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
37183299 GGTGTATTCA
37183309 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
37183336 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
37183363 TCTTTTTACC
1 TCATTTTACC
37183373 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:37183481 original size:54 final size:54
Alignment explanation
Indices: 37183406--37183536 Score: 147
Period size: 54 Copynumber: 2.4 Consensus size: 54
37183396 CATCCTACAA
* * * * *** *
37183406 GGGTGTTTTGGTAAATCTACAAATT-AAGAGTATTTCTGTAATTTTGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAATTGAAG-GTATTTCGGTAATTTCACAAACCAG
37183460 GGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACCAG
* **
37183514 TGGTATTTTGACAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
37183537 CTAGGAGTGT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 62 0.95
55 3 0.05
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACCAG
Found at i:37183556 original size:27 final size:26
Alignment explanation
Indices: 37183411--37183556 Score: 89
Period size: 27 Copynumber: 5.4 Consensus size: 26
37183401 TACAAGGGTG
* * *
37183411 TTTTGGTAAATCTACAAATTAAGAGTA
1 TTTTGGTAATTTTACAAA-TAGGAGTA
** *
37183438 TTTCT-GTAATTTTGTAAATCAGGGGTA
1 TTT-TGGTAATTTTACAAAT-AGGAGTA
* *
37183465 TTTTGGTAATTTTACAAATTGAAGGTA
1 TTTTGGTAATTTTACAAATAGGA-GTA
* * *
37183492 TTTCGGTAATTTCACAAACCAGTG-GTA
1 TTTTGGTAATTTTACAAA-TAG-GAGTA
** *
37183519 TTTTGACAATTTTACAAACTAGGAGTG
1 TTTTGGTAATTTTACAAA-TAGGAGTA
37183546 TTTTGGTAATT
1 TTTTGGTAATT
37183557 CTACCCTATA
Statistics
Matches: 88, Mismatches: 24, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
26 4 0.05
27 82 0.93
28 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (26 bp):
TTTTGGTAATTTTACAAATAGGAGTA
Found at i:37183618 original size:27 final size:27
Alignment explanation
Indices: 37183588--37183679 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
37183578 GTAATTTCAC
* *
37183588 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
37183615 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
37183642 AATCGAGAGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
37183669 AATCGAGGGTA
1 AATCGAGGGTA
37183680 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:37183688 original size:27 final size:27
Alignment explanation
Indices: 37183604--37183879 Score: 128
Period size: 27 Copynumber: 10.1 Consensus size: 27
37183594 GGGTAAAACA
* * * ** *
37183604 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAATTTG
* ****
37183631 GTAATTCTATAAATCGAGAGTAAAACA
1 GTAATTCTATAAATCGAGGGTAATTTG
*
37183658 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAATTTG
* *
37183685 GTAATT-TTTACAAGTCGAGGGT-ATTTCA
1 GTAATTCTATA-AA-TCGAGGGTAATTT-G
* * * * * * *
37183713 GTAATTTTACAAGTTAGGGGGTATTTTA
1 GTAATTCTATAA-ATCGAGGGTAATTTG
* * * * *
37183741 GTAATTTTACAAA-CTAGGGGTATTTTA
1 GTAATTCTATAAATCGA-GGGTAATTTG
* * **
37183768 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAATTTG
* * **
37183795 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAATTTG
*
37183822 GTAATTCTATAAATCGAGGGTAGA-ATG
1 GTAATTCTATAAATCGAGGGTA-ATTTG
* * *
37183849 GTAATTCTGTAAATCGGGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAATTTG
37183876 GTAA
1 GTAA
37183880 ACTAAAGTAT
Statistics
Matches: 198, Mismatches: 41, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.02
27 153 0.77
28 37 0.19
29 5 0.03
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAATTTG
Found at i:37183787 original size:28 final size:28
Alignment explanation
Indices: 37183657--37183787 Score: 110
Period size: 28 Copynumber: 4.8 Consensus size: 28
37183647 AGAGTAAAAC
* *
37183657 AGTAATTCTATAAATCGA-GGGTACTTT
1 AGTAATTTTATAAATCGAGGGGTATTTT
* *
37183684 GGTAATTTT-TACAAGTCGA-GGGTATTTC
1 AGTAATTTTATA-AA-TCGAGGGGTATTTT
* * *
37183712 AGTAATTTTACAAGT-TAGGGGGTATTTT
1 AGTAATTTTATAAATCGA-GGGGTATTTT
* *
37183740 AGTAATTTTACAAA-CTAGGGGTATTTT
1 AGTAATTTTATAAATCGAGGGGTATTTT
*
37183767 AGTAATTTTGTAAATCGAGGG
1 AGTAATTTTATAAATCGAGGG
37183788 TAAAATGATA
Statistics
Matches: 84, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.04
27 32 0.38
28 48 0.57
29 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.39
Consensus pattern (28 bp):
AGTAATTTTATAAATCGAGGGGTATTTT
Found at i:37183870 original size:54 final size:54
Alignment explanation
Indices: 37183768--37183870 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
37183758 GGGTATTTTA
* * *
37183768 GTAATTTTGTAAATCGAGGGTAAAATGATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAATG
* * * *
37183822 GTAATTCTATAAATCGAGGGTAGAATGGTAATTCTGTAAATCGGGGGTA
1 GTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTA
37183871 CTTTGGTAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (54 bp):
GTAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAATG
Found at i:37192018 original size:48 final size:49
Alignment explanation
Indices: 37191951--37192050 Score: 148
Period size: 48 Copynumber: 2.0 Consensus size: 49
37191941 CACATAGTAG
*
37191951 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCA-CATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCAGCATATC
* * *
37191999 GATGTCAATGCTATGTCCCAGACATGGTCTTACATGGGATCATGCATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCA-GCATATC
37192049 GA
1 GA
37192051 AGTTGATAGC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
48 38 0.83
50 8 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCAGCATATC
Found at i:37196717 original size:40 final size:40
Alignment explanation
Indices: 37196637--37196821 Score: 243
Period size: 40 Copynumber: 4.6 Consensus size: 40
37196627 AACCCAAGTA
* *
37196637 CCTTCGGGATTTAG-CCGGATATAGCAACTCA-CACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACT-AGCACAAATG
*
37196676 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
37196716 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
37196759 CCTTCGGGACTTTGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
37196799 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37196822 CATCCGAATA
Statistics
Matches: 130, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
39 14 0.11
40 78 0.60
41 1 0.01
43 36 0.28
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:37196765 original size:83 final size:80
Alignment explanation
Indices: 37196637--37196821 Score: 282
Period size: 83 Copynumber: 2.3 Consensus size: 80
37196627 AACCCAAGTA
* * *
37196637 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
37196701 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
37196716 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTTGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCACACAAATGCCTTCGGGACTTAGCCCGGATA
37196781 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
37196799 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37196822 CATCCGAATA
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
79 13 0.14
80 10 0.11
81 1 0.01
83 71 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:37198416 original size:27 final size:27
Alignment explanation
Indices: 37198386--37198563 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
37198376 ATATTGAGTC
* *
37198386 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37198413 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37198440 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* ** ** *
37198468 CCCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37198495 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
37198522 CGCACACTTGGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
37198549 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37198564 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37198525 original size:82 final size:81
Alignment explanation
Indices: 37198407--37198562 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
37198397 TGCTATATAA
* *
37198407 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCCCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCCCA
37198472 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * *
37198489 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTGGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCCCA
37198553 CACTTAGTGC
65 CACTTAGTGC
37198563 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCCCAC
ACTTAGTGCCGCATGG
Found at i:37202877 original size:40 final size:40
Alignment explanation
Indices: 37202818--37203038 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
37202808 CATTTGAATG
*
37202818 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
37202858 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
37202898 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
37202938 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
37202978 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
37203018 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
37203039 AAACTTGGGT
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 143 0.89
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:37211780 original size:27 final size:27
Alignment explanation
Indices: 37211750--37211807 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
37211740 GAAAGAGTAA
*
37211750 CCTTTGTGGTGAAA-TATGAAAGGAATG
1 CCTTTGTGG-AAAACTATGAAAGGAATG
* * *
37211777 CCTTTTTGGAAAACTCTGTAAGGAATG
1 CCTTTGTGGAAAACTATGAAAGGAATG
37211804 CCTT
1 CCTT
37211808 CATGACGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (27 bp):
CCTTTGTGGAAAACTATGAAAGGAATG
Found at i:37214906 original size:17 final size:16
Alignment explanation
Indices: 37214872--37214906 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
37214862 ATGTAGCAAA
*
37214872 GAAAATTTTGGGGATG
1 GAAAATTTTGGAGATG
37214888 GAAAATTTTGAGAGATG
1 GAAAATTTTG-GAGATG
37214905 GA
1 GA
37214907 CATTTAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (16 bp):
GAAAATTTTGGAGATG
Found at i:37225451 original size:16 final size:16
Alignment explanation
Indices: 37225432--37225462 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37225422 CTTCTTCACT
37225432 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
37225448 TACTTACTTACTTAA
1 TACTCACTTACTTAA
37225463 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:37225468 original size:20 final size:20
Alignment explanation
Indices: 37225429--37225468 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37225419 AAACTTCTTC
* *
37225429 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
37225449 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
37225469 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:37226395 original size:41 final size:41
Alignment explanation
Indices: 37226340--37226566 Score: 314
Period size: 41 Copynumber: 5.5 Consensus size: 41
37226330 TCAGTGAAAT
37226340 TCAGGCTTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
1 TCAGGC-TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
* *
37226382 TCAGGCTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
* *
37226423 TTAGGCTTATTGCCTAGCAGGCTTTATACCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
* *
37226464 TCAGGCTTATTGCCTAGCAGGCTTTATATGCCAGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTA--CCGGTGTATTATA
* * *
37226507 TCAGGCTTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
37226548 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
37226567 AATTTTATGT
Statistics
Matches: 167, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.01
41 123 0.74
42 6 0.04
43 36 0.22
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATA
Found at i:37226484 original size:82 final size:84
Alignment explanation
Indices: 37226336--37226566 Score: 326
Period size: 84 Copynumber: 2.8 Consensus size: 84
37226326 TGTATCAGTG
37226336 AAATTCAGGCTTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCA
1 AAATT-AGGC-TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCA
* *
37226401 GGC-TT-TGTGCCGGTGTATT
64 GGCTTTATATGCCAGTGTATT
*
37226420 AAATTAGGCTTATTGCCTAGCAGGCTTTATACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
1 AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
37226485 CTTTATATGCCAGTGTATT
66 CTTTATATGCCAGTGTATT
* * * * *
37226504 ATATCAGGCTTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
37226567 AATTTTATGT
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
82 56 0.42
83 8 0.06
84 70 0.52
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (84 bp):
AAATTAGGCTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGG
CTTTATATGCCAGTGTATT
Found at i:37226510 original size:125 final size:124
Alignment explanation
Indices: 37226340--37226566 Score: 359
Period size: 125 Copynumber: 1.8 Consensus size: 124
37226330 TCAGTGAAAT
* *
37226340 TCAGGCTTTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
1 TCAGGCTTTATTGCCTAGCAGGCTTTATACCAGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
* *
37226405 TTGTGCCGGTGTATTAAATTAGGC-TTATTGCCTAGCAGGCTTTATACCGGTGTATTATA
66 CTGTGCCGGTGTATTAAACTAGGCTTTA-TGCCTAGCAGGCTTTATACCGGTGTATTATA
*
37226464 TCAGGC-TTATTGCCTAGCAGGCTTTATATGCCAGTGTATTATATCAGGCTTATTGCCTAGTAGG
1 TCAGGCTTTATTGCCTAGCAGGCTTTATA--CCAGTGTATTATATCAGGCTTATTGCCTAGCAGG
*
37226528 CTCTGTGCCGGTGTATTATACTAGGCTTTATGCCTAGCA
64 CTCTGTGCCGGTGTATTAAACTAGGCTTTATGCCTAGCA
37226567 AATTTTATGT
Statistics
Matches: 94, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
123 21 0.22
124 6 0.06
125 64 0.68
126 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (124 bp):
TCAGGCTTTATTGCCTAGCAGGCTTTATACCAGTGTATTATATCAGGCTTATTGCCTAGCAGGCT
CTGTGCCGGTGTATTAAACTAGGCTTTATGCCTAGCAGGCTTTATACCGGTGTATTATA
Found at i:37227750 original size:6 final size:6
Alignment explanation
Indices: 37227720--37227798 Score: 72
Period size: 6 Copynumber: 13.0 Consensus size: 6
37227710 AAGAAACATT
* *
37227720 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
37227767 GTGACAAA ATTAGA ATCAGA ATCAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA
37227799 CTTAGGTGAC
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
5 2 0.03
6 52 0.90
7 3 0.05
8 1 0.02
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:37227782 original size:37 final size:37
Alignment explanation
Indices: 37227734--37227828 Score: 136
Period size: 37 Copynumber: 2.6 Consensus size: 37
37227724 GAACTAGAAT
*
37227734 CAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
* * *
37227771 CAAAATTAGAATCAGAATCAGAATCAGACTTAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
* *
37227808 CATAATCAGAATCAGTATCAG
1 CAAAATCAGAATCAGAATCAG
37227829 GTAACAGAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.20
Consensus pattern (37 bp):
CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:37227830 original size:25 final size:25
Alignment explanation
Indices: 37227783--37227840 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
37227773 AAATTAGAAT
* *
37227783 CAGAATCAGAATCAGACTTAGGTGA
1 CAGAATCAGAATCAGACTCAGGTAA
*
37227808 CATAATCAGAATCAGTA-TCAGGTAA
1 CAGAATCAGAATCAG-ACTCAGGTAA
37227833 CAGAATCA
1 CAGAATCA
37227841 AAATTAGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGACTCAGGTAA
Found at i:37228017 original size:27 final size:26
Alignment explanation
Indices: 37227969--37228020 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
37227959 ATGAGGCTTC
*
37227969 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
37227995 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37228021 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37228691 original size:27 final size:27
Alignment explanation
Indices: 37228661--37228777 Score: 189
Period size: 27 Copynumber: 4.3 Consensus size: 27
37228651 TACCCCATGA
* * *
37228661 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCTTACAG
37228688 GGGTATTTCAGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCTTACAG
* *
37228715 GGGTATTTCAATAATCCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCTTACAG
37228742 GGGTATTTCAGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCTTACAG
37228769 GGGTATTTC
1 GGGTATTTC
37228778 GAAAATTTTA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCTTACAG
Found at i:37228811 original size:54 final size:54
Alignment explanation
Indices: 37228683--37228803 Score: 156
Period size: 54 Copynumber: 2.2 Consensus size: 54
37228673 AATTCTACCC
* **
37228683 TACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACCT
1 TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACAA
* **
37228737 TACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGAA-AATTTTACAA
1 TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTC-AATAATCCTACAA
37228791 -ATCAAGGGTATTT
1 TA-CAAGGGTATTT
37228804 TGGTAATTTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 1 0.02
54 57 0.95
55 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (54 bp):
TACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAATAATCCTACAA
Found at i:37228828 original size:27 final size:27
Alignment explanation
Indices: 37228781--37228893 Score: 115
Period size: 27 Copynumber: 4.2 Consensus size: 27
37228771 GTATTTCGAA
37228781 AATTTTACAAATCAAGGGTATTTTGGT
1 AATTTTACAAATCAAGGGTATTTTGGT
*
37228808 AATTTTACAAA-CCAGGAGTATTTTGGT
1 AATTTTACAAATCAAGG-GTATTTTGGT
* * *
37228835 AATTTTGCTAATTGAA-GGTATTTTGGT
1 AATTTTAC-AAATCAAGGGTATTTTGGT
* * *
37228862 AATTTTGCTAATCGAA-GGTATTTTGAT
1 AATTTTACAAATC-AAGGGTATTTTGGT
37228889 AATTT
1 AATTT
37228894 GGTAAACTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 63 0.86
28 3 0.04
29 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
AATTTTACAAATCAAGGGTATTTTGGT
Found at i:37235486 original size:41 final size:41
Alignment explanation
Indices: 37235441--37235741 Score: 439
Period size: 41 Copynumber: 7.3 Consensus size: 41
37235431 TATTCGGACT
*
37235441 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
37235482 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
37235523 TTATTGCCTAGTAGGCTTTGTGCCGGTG-ATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
37235563 TTATTGCCTAGCAAGCTTTGTGCCAGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
37235604 TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
37235645 TTAATT-CCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TT-ATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
37235688 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
37235729 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
37235742 AATTTTATGT
Statistics
Matches: 237, Mismatches: 16, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
40 38 0.16
41 158 0.67
42 9 0.04
43 32 0.14
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:37235582 original size:81 final size:82
Alignment explanation
Indices: 37235441--37235742 Score: 432
Period size: 81 Copynumber: 3.7 Consensus size: 82
37235431 TATTCGGACT
* *
37235441 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
37235506 GGTGTATTATATCAGGC
66 GGTGTATTATATCAGGC
* *
37235523 TTATTGCCTAGTAGGCTTTGTGCCGGTG-ATTAAATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
* *
37235587 AGTGTATTAAATCAGGC
66 GGTGTATTATATCAGGC
* * *
37235604 TTATTGCCTAGCAGGCTTTGTACCGGTGTATTATATCAGGCTTAATT-CCTAGCAGGCTTTATAT
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTT-ATTGCCTAGCAAGC-TT-TGT
37235668 GCCGGTGTATTATATCAGGC
63 GCCGGTGTATTATATCAGGC
* *
37235688 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCAA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCAA
37235743 ATTTTATGTG
Statistics
Matches: 196, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
81 75 0.38
82 49 0.25
83 7 0.04
84 65 0.33
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.36
Consensus pattern (82 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAAGCTTTGTGCC
GGTGTATTATATCAGGC
Found at i:37235661 original size:122 final size:125
Alignment explanation
Indices: 37235441--37235741 Score: 443
Period size: 122 Copynumber: 2.4 Consensus size: 125
37235431 TATTCGGACT
* *
37235441 TTATTTCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTACC
* *
37235506 GGTGTATTATATCAGGCTTATTGCCTAGTAGGC-TT-TGTGCCGGTG-ATTAAATCAGGC
66 GGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTAAATCAGGC
* * *
37235563 TTATTGCCTAGCAAGCTTTGTGCCAGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTTTGTACC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTACC
*
37235628 GGTGTATTATATCAGGCTTAATT-CCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
66 GGTGTATTATATCAGGCTT-ATTGCCTAGCAGGCTTTATATGCCGGTGTATTAAATCAGGC
* *
37235688 TTATTGCCTAGTAGGCTCTGTGCCGGTGTATTATA-CTAGGCTT-TATGCCTAGCA
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGCTTAT-TGCCTAGCA
37235742 AATTTTATGT
Statistics
Matches: 160, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
122 88 0.55
123 5 0.03
124 11 0.07
125 56 0.35
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (125 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTACC
GGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTATATGCCGGTGTATTAAATCAGGC
Found at i:37248087 original size:27 final size:27
Alignment explanation
Indices: 37248056--37248233 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37248046 TGAATTGTAC
37248056 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37248083 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37248109 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37248137 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37248165 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37248192 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37248219 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37248234 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37248170 original size:82 final size:81
Alignment explanation
Indices: 37248057--37248212 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37248047 GAATTGTACA
* *
37248057 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37248121 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37248138 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37248203 TGCGAGTTGA
65 TGCGAATTGA
37248213 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37248224 original size:82 final size:81
Alignment explanation
Indices: 37248053--37248233 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37248043 GATTGAATTG
* *
37248053 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37248118 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37248134 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37248198 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37248216 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37248234 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37256168 original size:27 final size:27
Alignment explanation
Indices: 37256137--37256314 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37256127 TGAATTGTAC
37256137 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37256164 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37256190 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37256218 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37256246 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37256273 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37256300 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37256315 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37256251 original size:82 final size:81
Alignment explanation
Indices: 37256138--37256293 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37256128 GAATTGTACA
* *
37256138 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37256202 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37256219 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37256284 TGCGAGTTGA
65 TGCGAATTGA
37256294 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37256305 original size:82 final size:81
Alignment explanation
Indices: 37256134--37256314 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37256124 GATTGAATTG
* *
37256134 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37256199 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37256215 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37256279 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37256297 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37256315 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37259651 original size:30 final size:30
Alignment explanation
Indices: 37259615--37259671 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
37259605 CCGAGCCTAG
*
37259615 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
37259645 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
37259672 CATATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:37261724 original size:43 final size:43
Alignment explanation
Indices: 37261629--37261741 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
37261619 CCAATATGAG
* * * ** *
37261629 ATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGAG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAAA
37261672 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAAACA
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAA-A
* * *
37261715 ATTATGTGTAAGACCTTGTCTAGGACA
1 ATTACGTGTAAGACCATGTCTGGGACA
37261742 GTGGAATCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 2 0.03
43 58 0.97
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAAA
Found at i:37264721 original size:22 final size:22
Alignment explanation
Indices: 37264667--37264801 Score: 76
Period size: 23 Copynumber: 5.8 Consensus size: 22
37264657 GAATGACTTG
*
37264667 GCACTAAGTGTGCGGATTTTTGAAT
1 GCACTATGTGTGCGGA---TTGAAT
37264692 GCACTATGTGTGCGGATTGAAT
1 GCACTATGTGTGCGGATTGAAT
* *
37264714 AGCA-TATGTGTGCTGTTTGAAT
1 -GCACTATGTGTGCGGATTGAAT
* * * * *
37264736 GTCAATAGAGTGTGTGGATTTTAAG
1 G-CACTA-TGTGTGCGGA-TTGAAT
* *
37264761 GCACTATGTGTGCGG-GTGAGCT
1 GCACTATGTGTGCGGATTGA-AT
*
37264783 GGCACTAAGTGTGCGGATT
1 -GCACTATGTGTGCGGATT
37264802 TGATAGCTTA
Statistics
Matches: 84, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
21 3 0.04
22 24 0.29
23 26 0.31
24 11 0.13
25 20 0.24
ACGTcount: A:0.22, C:0.12, G:0.33, T:0.33
Consensus pattern (22 bp):
GCACTATGTGTGCGGATTGAAT
Found at i:37279384 original size:41 final size:41
Alignment explanation
Indices: 37279307--37279384 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37279297 TTAGTATCTC
* * *
37279307 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37279348 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37279385 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37287047 original size:39 final size:40
Alignment explanation
Indices: 37287004--37287169 Score: 221
Period size: 39 Copynumber: 4.2 Consensus size: 40
37286994 CTCGTTCAAG
* * *
37287004 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAA
** *
37287043 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAA
*
37287083 TGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCAC-AA
1 TGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAA
* *
37287121 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAA
*
37287161 GGCCTTCGG
1 TGCCTTCGG
37287170 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 28 0.24
39 50 0.43
40 37 0.32
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAA
Found at i:37287120 original size:78 final size:79
Alignment explanation
Indices: 37287004--37287222 Score: 253
Period size: 78 Copynumber: 2.8 Consensus size: 79
37286994 CTCGTTCAAG
* * * *
37287004 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTA
*
37287069 ACAACTCGCACGAA
66 ACAACTCGCACAAA
*
37287083 TGCCTTCGGGACTTAACCCGGATTTA-TAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTA
** *
37287147 GTATCTCGCACAAA
66 ACAACTCGCACAAA
* * * * * * * *
37287161 GGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
37287223 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
77 3 0.03
78 64 0.53
79 26 0.22
80 27 0.22
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTA
ACAACTCGCACAAA
Found at i:37287231 original size:41 final size:41
Alignment explanation
Indices: 37287154--37287231 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37287144 TTAGTATCTC
* * *
37287154 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37287195 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37287232 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37299432 original size:40 final size:40
Alignment explanation
Indices: 37299335--37299559 Score: 231
Period size: 40 Copynumber: 5.7 Consensus size: 40
37299325 TTGAATGCTG
* * * * *
37299335 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
37299375 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37299415 TCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* **
37299455 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
37299495 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
37299534 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
37299560 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 34 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37299577 original size:79 final size:79
Alignment explanation
Indices: 37299410--37299592 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 79
37299400 GTGCGAGATA
* * *
37299410 CTAAATCCAGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
37299475 CATTCGTGCGAGTTG
65 CATTCGAACGAGGAG
* * * *
37299490 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCC-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
37299554 CATTTGAACGAGGAG
65 CATTCGAACGAGGAG
* *
37299569 CTATATCCGGTTAAATCCCGAAGG
1 CTAAATCCGGTTAAGTCCCGAAGG
37299593 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 26 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CTAAATCCGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:37303913 original size:47 final size:45
Alignment explanation
Indices: 37303854--37303979 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 45
37303844 CTAGTAGCCA
*
37303854 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-T-GCAG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCAG
* * *
37303900 ATGCCATGTCCCAGACACAGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACA-TGTCTTACACTAGCTCTCATAA-GTGGCAG
37303948 ATGCATGTCCCAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTAGCTC
37303980 ACAAAAAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 18 0.26
47 27 0.39
48 22 0.32
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCAG
Found at i:37307183 original size:40 final size:40
Alignment explanation
Indices: 37307082--37307301 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
37307072 AACCCAAGTA
* *
37307082 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
37307121 CCTT-GGGTCTTAGCCCCGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** *
37307160 CCTTCGGGACTTAGCCCGGATATAG-CAACTCCCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
37307200 CCTTCGGGACTTAGCCCGGGTATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
37307240 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
37307279 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
37307302 CATCCGAATA
Statistics
Matches: 156, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 7 0.04
39 54 0.35
40 94 0.60
41 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:37318312 original size:47 final size:48
Alignment explanation
Indices: 37318243--37318419 Score: 170
Period size: 47 Copynumber: 3.8 Consensus size: 48
37318233 AGGTCCCGAC
* *
37318243 GCCATGTCCTAGACACGGTCTTACACTGGGTCAT-ATCTCAAGTCGAT
1 GCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCAAGTCGAT
* * * *
37318290 GCCATGTCCCAGACACGGTCTTAAACTGACT-ATCATCTCGTAGCCGAT
1 GCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTC-AAGTCGAT
* * * *
37318338 G-CATGTCCCAAACA-TGTCTTACACTAGCTC-TCGTCTCAA-TGCTGAT
1 GCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCAAGT-C-GAT
* *
37318384 GCCATGTCCTAGACACAGTCTTACACTGGCTC-TCAT
1 GCCATGTCCCAGACACGGTCTTACACTGGCTCATCAT
37318420 AATGTGGCCA
Statistics
Matches: 104, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.02
46 23 0.22
47 55 0.53
48 24 0.23
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACACGGTCTTACACTGGCTCATCATCTCAAGTCGAT
Found at i:37318385 original size:46 final size:43
Alignment explanation
Indices: 37318335--37318461 Score: 114
Period size: 48 Copynumber: 2.8 Consensus size: 43
37318325 TCTCGTAGCC
*
37318335 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCT-
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AATG-TG
* *
37318381 GATGCCATGTCCTAGACACA-GTCTTACACTGGCTCTCATAATGTG
1 GATG-CATGTCCCA-A-ACATGTCTTACACTAGCTCTCATAATGTG
*
37318426 GCCAATGCATGTCCCAGACATGTCTTACACTAGCTC
1 G---ATGCATGTCCCAAACATGTCTTACACTAGCTC
37318462 ACAAACAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
44 1 0.01
45 8 0.12
46 19 0.28
47 16 0.24
48 20 0.30
49 3 0.04
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (43 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGTG
Found at i:37318389 original size:94 final size:94
Alignment explanation
Indices: 37318287--37318461 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
37318277 ATCTCAAGTC
* * *
37318287 GATGCCATGTCCCAGACACGGTCTTAAACTGACTATCAT-CTCGTAGCCGATGCATGTCCCAAAC
1 GATGCCATGTCCCAGACACAGTCTTAAACTGACTATCATAAT-GTAGCCAATGCATGTCCCAAAC
37318351 ATGTCTTACACTAGCTCTCGTCTCAATGCT
65 ATGTCTTACACTAGCTCTCGTCTCAATGCT
* * * * * *
37318381 GATGCCATGTCCTAGACACAGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACACAGTCTTAAACTGACTATCATAATGTAGCCAATGCATGTCCCAAACA
37318446 TGTCTTACACTAGCTC
66 TGTCTTACACTAGCTC
37318462 ACAAACAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 70 0.99
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAGACACAGTCTTAAACTGACTATCATAATGTAGCCAATGCATGTCCCAAACA
TGTCTTACACTAGCTCTCGTCTCAATGCT
Found at i:37321731 original size:27 final size:27
Alignment explanation
Indices: 37321701--37321878 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
37321691 ATATTGAGTC
* * *
37321701 CGCACACTCAATGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
37321728 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
37321755 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
37321783 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
37321810 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
37321837 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
37321864 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37321879 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:37321842 original size:82 final size:81
Alignment explanation
Indices: 37321722--37321877 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37321712 TGCTATATAA
* *
37321722 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37321787 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37321804 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37321868 CACTTAGTGC
65 CACTTAGTGC
37321878 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37330320 original size:20 final size:21
Alignment explanation
Indices: 37330278--37330320 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37330268 ATTTTAGTGA
*
37330278 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
37330299 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
37330319 TT
1 TT
37330321 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:37333983 original size:16 final size:16
Alignment explanation
Indices: 37333962--37333992 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37333952 ATAAATTTGA
37333962 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
37333978 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
37333993 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:37344580 original size:107 final size:107
Alignment explanation
Indices: 37344443--37344644 Score: 386
Period size: 107 Copynumber: 1.9 Consensus size: 107
37344433 GAGTTGGCCT
37344443 GTTTAGGTTGAGGTGGTTATGTATACATCAATGTGCATATGGCTTGGTTATGTGATTAAATATAA
1 GTTTAGGTTGAGGTGGTTATGTATACATCAATGTGCATATGGCTTGGTTATGTGATTAAATATAA
37344508 ACATGTTATGCTTGTTGATATTTGGCAATTACGGGGTTGTGA
66 ACATGTTATGCTTGTTGATATTTGGCAATTACGGGGTTGTGA
* *
37344550 GTTTAGGTTGATGTGGTTATGTATATATCAATGTGCATATGGCTTGGTTATGTGATTAAATATAA
1 GTTTAGGTTGAGGTGGTTATGTATACATCAATGTGCATATGGCTTGGTTATGTGATTAAATATAA
37344615 ACATGTTATGCTTGTTGATATTTGGCAATT
66 ACATGTTATGCTTGTTGATATTTGGCAATT
37344645 TTGGGGACTA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 93 1.00
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (107 bp):
GTTTAGGTTGAGGTGGTTATGTATACATCAATGTGCATATGGCTTGGTTATGTGATTAAATATAA
ACATGTTATGCTTGTTGATATTTGGCAATTACGGGGTTGTGA
Found at i:37355542 original size:30 final size:30
Alignment explanation
Indices: 37355508--37355565 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
37355498 ATGTGTTTGG
37355508 AAATTTTGTTACATTGATGATTAATTCTGA
1 AAATTTTGTTACATTGATGATTAATTCTGA
37355538 AAATTTTGTTACATTGATGATTAATTCT
1 AAATTTTGTTACATTGATGATTAATTCT
37355566 TGAATCATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (30 bp):
AAATTTTGTTACATTGATGATTAATTCTGA
Found at i:37362514 original size:40 final size:40
Alignment explanation
Indices: 37362477--37362622 Score: 206
Period size: 40 Copynumber: 3.6 Consensus size: 40
37362467 GCTACTCGTT
* *
37362477 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
37362517 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37362557 CAAATGCCTTCGGGACTTAACCCGGATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
37362598 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37362623 CATCATTCAA
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
40 88 0.90
41 10 0.10
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37369396 original size:27 final size:27
Alignment explanation
Indices: 37369366--37369543 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37369356 ATATTGAGTC
* * * *
37369366 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37369393 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37369420 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37369448 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37369475 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37369502 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37369529 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37369544 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37369505 original size:82 final size:81
Alignment explanation
Indices: 37369387--37369542 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37369377 TGCTATATAA
* *
37369387 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37369452 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37369469 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37369533 CACTTAGTGC
65 CACTTAGTGC
37369543 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37370042 original size:12 final size:12
Alignment explanation
Indices: 37370025--37370051 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37370015 ATGGCATACT
37370025 TATGTATATATA
1 TATGTATATATA
37370037 TATGTATATATA
1 TATGTATATATA
37370049 TAT
1 TAT
37370052 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:37373792 original size:40 final size:40
Alignment explanation
Indices: 37373608--37373793 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
37373598 GCTACTCGTT
*
37373608 CAAATGCCTTCGGGACATT-GCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TTAACCCGGATT-TAGTAACTCGCA
*
37373648 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
37373688 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37373728 CAAATGCCTTCGGGACTTAACCCGGATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
37373769 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37373794 CATCATTCAA
Statistics
Matches: 134, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.01
40 120 0.90
41 12 0.09
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37378460 original size:6 final size:6
Alignment explanation
Indices: 37378451--37378592 Score: 67
Period size: 6 Copynumber: 22.8 Consensus size: 6
37378441 TATTAGAACT
* * * * *
37378451 AGAATC AGAATT AGAATC AGAATT AGGTGAT- AGAATC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * * *
37378500 AGTATC AGGTAA-C AGAATC AAAATC AGAATC AGTATT AGGTAA-C AGAATC
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
37378550 AAAATC AGAATC AGCATC AGGTAA-C AGAATC AAAAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC -AGAATC AGAAT
37378593 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 23, Indels: 26
0.67 0.15 0.17
Matches are distributed among these distances:
5 8 0.08
6 72 0.72
7 15 0.15
8 5 0.05
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:37378485 original size:31 final size:31
Alignment explanation
Indices: 37378451--37378592 Score: 176
Period size: 31 Copynumber: 4.5 Consensus size: 31
37378441 TATTAGAACT
* * * * * *
37378451 AGAATCAGAATTAGAATCAGAATTAGGTGAT
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* * *
37378482 AGAATCAGAATCAAAATTAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
37378513 AGAATCAAAATCAGAATCAGTATTAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
37378544 AGAATCAAAATCAGAATCAGCATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
37378575 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
37378593 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 86 0.89
32 11 0.11
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:37378548 original size:62 final size:62
Alignment explanation
Indices: 37378451--37378592 Score: 194
Period size: 62 Copynumber: 2.3 Consensus size: 62
37378441 TATTAGAACT
* * * * * * *
37378451 AGAATCAGAATTAGAATCAGAATTAGGTGATAGAATCAGAATCAAAATTAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAACAGAATCAAAATCAAAATCAGCATCAGGTAAC
* *
37378513 AGAATCAAAATCAGAATCAGTATTAGGTAACAGAATCAAAATCAGAATCAGCATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAACAGAATCAAAATCAAAATCAGCATCAGGTAAC
37378575 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
37378593 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
62 59 0.84
63 11 0.16
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (62 bp):
AGAATCAAAATCAGAATCAGAATTAGGTAACAGAATCAAAATCAAAATCAGCATCAGGTAAC
Found at i:37378771 original size:27 final size:26
Alignment explanation
Indices: 37378729--37378823 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
37378719 GCTCAGTTAT
* *
37378729 CAGATATTGTGACAGAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
*
37378756 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
* *
37378782 CAGATATTTGTGGCATAACCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCA-AAA
*
37378810 CAGATAATGTGGCA
1 CAGATATTGTGGCA
37378824 AAGCGACTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 7 0.12
27 44 0.75
28 8 0.14
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:37379017 original size:22 final size:22
Alignment explanation
Indices: 37378989--37379053 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
37378979 GCAAATACGT
*
37378989 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
37379011 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
37379033 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
37379054 AAGGCCTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:37379529 original size:27 final size:27
Alignment explanation
Indices: 37379480--37379889 Score: 518
Period size: 27 Copynumber: 15.3 Consensus size: 27
37379470 GGGGCAAAAT
* * * *
37379480 GGTAATTTTACCCCACA-AGGTATCCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* * * **
37379506 GATAATTCCACTCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTCC
* **
37379533 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTCC
*
37379560 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
** *
37379587 GGTAATTCTACCCTACAGTTGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
* * *
37379614 GGTAATTTTACCCTATAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
*
37379641 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
37379668 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
37379695 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
37379722 GGTAATTCTACCCTACAGGGGTATTCT
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
37379749 GGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTCC
* *
37379776 GGTAATTCTACCTTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
*
37379803 GGTAATTCTACCTTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
37379830 -GTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTCC
* * **
37379856 GGTAATTCTACCCTGCAGGGCTATTTT
1 GGTAATTCTACCCTACAGGGGTATTCC
37379883 GGTAATT
1 GGTAATT
37379890 TTACAAACCA
Statistics
Matches: 338, Mismatches: 44, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
26 37 0.11
27 301 0.89
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTCC
Found at i:37379576 original size:54 final size:54
Alignment explanation
Indices: 37379508--37379943 Score: 518
Period size: 54 Copynumber: 8.1 Consensus size: 54
37379498 GGTATCCCGA
* * *** *
37379508 TAATTCCACTCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
** *
37379562 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGTTGTATTCTGG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* * * * *
37379616 TAATTTTACCCTATAGGGGTATTCTGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* **
37379670 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* * *
37379724 TAATTCTACCCTACAGGGGTATTCTGGTAATTCTACTCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* * * **
37379778 TAATTCTACCTTATAGGGGTATTCCGGTAATTCTACCTTACAGGGGTA-TTCCG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* *
37379831 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTGCAGGGCTATTTTGG
1 TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
* ** * ** * *
37379885 TAATTTTA-CAAACCAGTGGTATTTTGGTAATTTTA-CCAACTAGGGGTATTTTGG
1 TAATTCTACCCTA-CAGGGGTATTCCGGTAATTCTACCCTAC-AGGGGTATTTTGG
37379939 TAATT
1 TAATT
37379944 TTACAAACCA
Statistics
Matches: 329, Mismatches: 50, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
53 52 0.16
54 277 0.84
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTTTGG
Found at i:37379944 original size:54 final size:53
Alignment explanation
Indices: 37379872--37380024 Score: 204
Period size: 53 Copynumber: 2.9 Consensus size: 53
37379862 TCTACCCTGC
* *
37379872 AGGGCTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACCA-ACT
1 AGGGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTAGTAATTTTA-CAGACT
*
37379926 AGGGGTATTTTGGTAATTTTACAAACCAGGG-ATATTTAGCAATTTTACAGACT
1 AGGGGTATTTTGGTAATTTTACAAACCAGGGTAT-TTTAGTAATTTTACAGACT
**
37379979 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTAGTAATTTT
37380025 GTAAATCGAG
Statistics
Matches: 89, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
52 27 0.30
53 32 0.36
54 30 0.34
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTAGTAATTTTACAGACT
Found at i:37379974 original size:26 final size:26
Alignment explanation
Indices: 37379871--37380024 Score: 175
Period size: 27 Copynumber: 5.8 Consensus size: 26
37379861 TTCTACCCTG
37379871 CAGGGCTATTTTGGTAATTTTACAAAC
1 CAGGG-TATTTTGGTAATTTTACAAAC
*
37379898 CAGTGGTATTTTGGTAATTTTACCAAC
1 CAG-GGTATTTTGGTAATTTTACAAAC
*
37379925 TAGGGGTATTTTGGTAATTTTACAAAC
1 CA-GGGTATTTTGGTAATTTTACAAAC
* * *
37379952 CAGGG-ATATTTAGCAATTTTACAGAC
1 CAGGGTAT-TTTGGTAATTTTACAAAC
* **
37379978 TAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGTATTTTGGTAATTTTACAAAC
*
37380004 CAAGGGTATTTTAGTAATTTT
1 C-AGGGTATTTTGGTAATTTT
37380025 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.02
26 35 0.33
27 67 0.63
28 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
CAGGGTATTTTGGTAATTTTACAAAC
Found at i:37380036 original size:27 final size:27
Alignment explanation
Indices: 37380015--37380146 Score: 201
Period size: 27 Copynumber: 4.9 Consensus size: 27
37380005 AAGGGTATTT
*
37380015 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
37380042 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
37380069 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
37380096 TAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
37380123 CGGTAATTATGTAAATCGGGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
37380147 CTTTGGTAAT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:37380049 original size:54 final size:54
Alignment explanation
Indices: 37379990--37380146 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 54
37379980 GGGTATTTTG
* * *** * *
37379990 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
37380044 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
* ** * * *
37380098 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCGGGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
37380147 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
Done.