Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 116 of 320
Found at i:37837154 original size:27 final size:26
Alignment explanation
Indices: 37837133--37837212 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
37837123 CAAATTATTG
*
37837133 AAATACCCTCGACTTGTAAAATTACC
1 AAATACCCTCGATTTGTAAAATTACC
* *
37837159 AAAGTACCCCCGATTTATAAAATTACCC
1 AAA-TACCCTCGATTTGTAAAATTA-CC
*
37837187 AAATATCCTCGATTTGTAAAATTACC
1 AAATACCCTCGATTTGTAAAATTACC
37837213 GAAAAAGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.11
27 36 0.78
28 5 0.11
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (26 bp):
AAATACCCTCGATTTGTAAAATTACC
Found at i:37837252 original size:27 final size:27
Alignment explanation
Indices: 37837222--37837310 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
37837212 CGAAAAAGAT
*
37837222 AGAATTACCATTTTACTCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
37837249 AGAATTATCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
37837276 AGAATTACCATTTGACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
37837303 AAAATTAC
1 AGAATTAC
37837311 TGAAATACCA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:37837364 original size:27 final size:27
Alignment explanation
Indices: 37837331--37837404 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 27
37837321 TTGGCTTACA
*
37837331 AAATTACCAAAATACCCCTGGTTTAT-
1 AAATTACCAAAATACCCCTGATTTATG
* *
37837357 AAATTTACCAAAATACCCCTAATTTGTG
1 AAA-TTACCAAAATACCCCTGATTTATG
37837385 AAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
37837405 TAGGGTAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.07
27 36 0.86
28 3 0.07
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTATG
Found at i:37837416 original size:27 final size:27
Alignment explanation
Indices: 37837386--37837582 Score: 241
Period size: 27 Copynumber: 7.3 Consensus size: 27
37837376 TAATTTGTGA
37837386 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
37837413 AATTATCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
37837440 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
37837467 AATTACTGAAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
37837494 AATTATCGAAATACCCTTGTGGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
37837521 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
37837548 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
37837575 AATTACCA
1 AATTACCA
37837583 TTTTGCCCTA
Statistics
Matches: 144, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:37837423 original size:54 final size:53
Alignment explanation
Indices: 37837361--37837580 Score: 185
Period size: 54 Copynumber: 4.1 Consensus size: 53
37837351 GTTTATAAAT
*
37837361 TTACCAAAATACCCCTAATTT-GT-GAAATTACCAAAATACCCCTGTAGGGTAGAA
1 TTACTAAAATACCCCT--TTTGGTAG-AATTACCAAAATACCCCTGTAGGGTAGAA
** * *
37837415 TTA-TCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTGTAGGGTAGAA
1 TTACT-AAAATACCCCT-TTTGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
* * * * * *
37837469 TTACTGAAATACCCCTGTATGGTAGAATTATCGAAATACCCTTGTGGGGTAGAA
1 TTACTAAAATACCCCT-TTTGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
** * * * * * *
37837523 TTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATACCCTTGTGGGGTAAAA
1 TTACTAAAATACCCCT-TTTGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
37837577 TTAC
1 TTAC
37837581 CATTTTGCCC
Statistics
Matches: 144, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 141 0.98
55 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (53 bp):
TTACTAAAATACCCCTTTTGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
Found at i:37838027 original size:31 final size:30
Alignment explanation
Indices: 37837986--37838081 Score: 106
Period size: 31 Copynumber: 3.1 Consensus size: 30
37837976 ATTCCCATTT
*
37837986 TGATTTTGATTCTGTTACCTGATATTGATTC
1 TGATTCTGATTCTGTTACCTGAT-TTGATTC
* * *
37838017 TGATTCTGATTCTGTCACCTAATTTTGATTT
1 TGATTCTGATTCTGTTACCTGA-TTTGATTC
37838048 TGATTCTGATTCTGATT--CTGATTCTGATTC
1 TGATTCTGATTCTG-TTACCTGATT-TGATTC
37838078 TGAT
1 TGAT
37838082 AATCTTTCTT
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.04
30 12 0.22
31 39 0.71
32 2 0.04
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.51
Consensus pattern (30 bp):
TGATTCTGATTCTGTTACCTGATTTGATTC
Found at i:37838090 original size:18 final size:19
Alignment explanation
Indices: 37838050--37838101 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
37838040 TTTGATTTTG
37838050 ATTCTGATTCTGAT--TCT
1 ATTCTGATTCTGATAATCT
37838067 GATTCTGATTCTGATAATCT
1 -ATTCTGATTCTGATAATCT
*
37838087 -TTCTTATTCTG-TAAT
1 ATTCTGATTCTGATAAT
37838102 GGGTTAAAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 24 0.77
20 3 0.10
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.52
Consensus pattern (19 bp):
ATTCTGATTCTGATAATCT
Found at i:37838096 original size:6 final size:6
Alignment explanation
Indices: 37838011--37838081 Score: 81
Period size: 6 Copynumber: 11.7 Consensus size: 6
37838001 TACCTGATAT
* * * *
37838011 TGATTC TGATTC TGATTC TG-TCACC TAATTT TGATTT TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
37838060 TGATTC TGATTC TGATTC TGAT
1 TGATTC TGATTC TGATTC TGAT
37838082 AATCTTTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
5 1 0.02
6 52 0.93
7 2 0.04
8 1 0.02
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
TGATTC
Found at i:37850684 original size:67 final size:67
Alignment explanation
Indices: 37850611--37850761 Score: 159
Period size: 67 Copynumber: 2.3 Consensus size: 67
37850601 CATCATGTGT
* * * *
37850611 ACAAGAGAGCTAGGAGAAATTATGATGTAGCTAGGT-GCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAGGAG-AA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
37850673 TGTAG
63 TGTAG
* *
37850678 ACAAGAGAGCTACGG-G-ATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTA-GGAGAATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
37850741 GTAG
64 GTAG
*
37850745 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTAGGAGA
37850762 TAAACTGGCT
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
63 12 0.17
64 14 0.20
65 1 0.01
66 3 0.04
67 38 0.54
68 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTAGGAGAATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGT
AG
Found at i:37856884 original size:19 final size:19
Alignment explanation
Indices: 37856862--37856902 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
37856852 TTGCATGCAA
37856862 ATAATAAGCAACATTAATC
1 ATAATAAGCAACATTAATC
37856881 ATAATAAGCAACATTAATC
1 ATAATAAGCAACATTAATC
37856900 ATA
1 ATA
37856903 CATTAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.27
Consensus pattern (19 bp):
ATAATAAGCAACATTAATC
Found at i:37856907 original size:11 final size:11
Alignment explanation
Indices: 37856872--37856913 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
37856862 ATAATAAGCA
37856872 ACATTAATCAT
1 ACATTAATCAT
*
37856883 A-A-TAAGCA-
1 ACATTAATCAT
37856891 ACATTAATCAT
1 ACATTAATCAT
37856902 ACATTAATCAT
1 ACATTAATCAT
37856913 A
1 A
37856914 TGATTATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 1 0.04
9 6 0.23
10 6 0.23
11 13 0.50
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.31
Consensus pattern (11 bp):
ACATTAATCAT
Found at i:37865786 original size:28 final size:28
Alignment explanation
Indices: 37865746--37865806 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
37865736 TGTCCCTAGC
*
37865746 CCGTGTCATTTACACGGTCTAGACACGT
1 CCGTGTCATTTACACGGTCTAGACACAT
37865774 CCGTGTCATTTACACGGTCTAGACACAT
1 CCGTGTCATTTACACGGTCTAGACACAT
37865802 CCGTG
1 CCGTG
37865807 CGTCACCCGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (28 bp):
CCGTGTCATTTACACGGTCTAGACACAT
Found at i:37867898 original size:53 final size:53
Alignment explanation
Indices: 37867831--37867934 Score: 154
Period size: 53 Copynumber: 2.0 Consensus size: 53
37867821 TAAACTACGC
* * * *
37867831 TAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCA
1 TAAGGCAAAGATCCCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCA
* *
37867884 TAAGGCAAGGATCCCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 TAAGGCAAAGATCCCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTT
37867935 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (53 bp):
TAAGGCAAAGATCCCACGTAAGACCATGCCAAGACATGGAAATGGTAAGTTCA
Found at i:37880624 original size:18 final size:19
Alignment explanation
Indices: 37880595--37880638 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
37880585 CTTTTGCCGA
37880595 ATATACTTTTCATATGCA-C
1 ATATA-TTTTCATATGCATC
*
37880614 ATATATTTTCATTTGCATC
1 ATATATTTTCATATGCATC
37880633 ATATAT
1 ATATAT
37880639 AATTTGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATGCATC
Found at i:37899456 original size:40 final size:40
Alignment explanation
Indices: 37899408--37899653 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
37899398 GGACTAAGAT
* *
37899408 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
37899448 TCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* * *
37899488 TCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
37899528 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
37899568 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
** *
37899608 CCGAAGGCATTTGTGCGAGTTG-CTATAT-CTTGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
37899647 CCGAAGG
1 CCGAAGG
37899654 TACTTGGGTT
Statistics
Matches: 194, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 15 0.08
40 178 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:37912034 original size:13 final size:13
Alignment explanation
Indices: 37912018--37912045 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37912008 CCATACATGT
37912018 TTAAATTCTTACC
1 TTAAATTCTTACC
37912031 TTAAATTCTTACC
1 TTAAATTCTTACC
37912044 TT
1 TT
37912046 TGTTTAACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAAATTCTTACC
Found at i:37914496 original size:47 final size:46
Alignment explanation
Indices: 37914424--37914741 Score: 210
Period size: 47 Copynumber: 6.7 Consensus size: 46
37914414 AGGGTATAAT
* *
37914424 GCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCCATCAA
* * *
37914471 GCTGATGCCATGTCCCAGACATGGTCTTACACTAACTAC-CAAAATCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-CTC--CATC-AA
** * * * * *
37914520 GCCGACACCATGTCCAAGACATGCTCTTGCACTAACTCTCACAT-ATTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC-CATCA--A
* * * *
37914568 GTTCCGATGCCATGTCCCAAAGATGGTCTTACACTGACACAT-C-TCGTA
1 G--CCGATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCCATC-AA
*
37914616 GCCGATG-CATGTCCCAGACAT-GTCTTACAGT-ATCTCTCGTC-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTC--CATCAA
*
37914661 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-AA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCATCAA
37914706 TGTGGCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 ----GCCGATGCCATGTCCCAGACATGGTCTTACACTG
37914742 GCACACAAAT
Statistics
Matches: 215, Mismatches: 32, Indels: 49
0.73 0.11 0.17
Matches are distributed among these distances:
43 2 0.01
44 11 0.05
45 16 0.07
46 30 0.14
47 61 0.28
48 31 0.14
49 35 0.16
50 28 0.13
51 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCATCAA
Found at i:37916732 original size:57 final size:58
Alignment explanation
Indices: 37916636--37916772 Score: 188
Period size: 57 Copynumber: 2.4 Consensus size: 58
37916626 AACATATAAC
** *
37916636 AGGATTACCAGTCTAGGCTAAATCCTTTTTGAAATATATGCTCAGAAGAGC-TCA-ATT
1 AGGATTACCAGTCTAGGCTAAATCCTAATTGAAACATATGCTCAGAAGA-CATCATATT
* * * *
37916693 AGGATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCAGGAGACATTATATT
1 AGGATTACCAGTCTAGGCTAAATCCTAATTGAAACATATGCTCAGAAGACATCATATT
37916751 AGGATTACCAGTCTAGGCTAAA
1 AGGATTACCAGTCTAGGCTAAA
37916773 CTTCGTCAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 1 0.01
57 45 0.64
58 24 0.34
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.29
Consensus pattern (58 bp):
AGGATTACCAGTCTAGGCTAAATCCTAATTGAAACATATGCTCAGAAGACATCATATT
Found at i:37917669 original size:9 final size:9
Alignment explanation
Indices: 37917655--37917679 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37917645 TTTATCATCT
37917655 TTTAATTAA
1 TTTAATTAA
37917664 TTTAATTAA
1 TTTAATTAA
37917673 TTTAATT
1 TTTAATT
37917680 TCCAATTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTAA
Found at i:37923896 original size:30 final size:30
Alignment explanation
Indices: 37923838--37923896 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
37923828 ATTTTCGAGC
**
37923838 CTAGGGGCAAAACGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAACGGTCATTTTACCAAAGT
* **
37923868 CTAGGGGCAAAATGGTTGTTTTACCAAAG
1 CTAGGGGCAAAACGGTCATTTTACCAAAG
37923897 ATATGTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAACGGTCATTTTACCAAAGT
Found at i:37927189 original size:66 final size:69
Alignment explanation
Indices: 37927060--37927189 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 69
37927050 GGGATGTATC
* *
37927060 CCATGTAGAAAGAGAGCTACCGGAGAGGATAAATGTAGCTAGGTCACATGTGTGATTCCAAGTGA
1 CCATGTAGAAAGAGAGCTACC-G-GAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGA
37927125 AGGACA
64 AGGACA
* *
37927131 CCATGTAGACAAGAGAGCTA-C-GA-GATAAAT-TGGCTAGGTCACATGGGTGATACTAAGTG
1 CCATGTAGA-AAGAGAGCTACCGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
37927190 TTCACCATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 25 0.46
67 7 0.13
68 2 0.04
71 10 0.19
72 10 0.19
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (69 bp):
CCATGTAGAAAGAGAGCTACCGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAG
GACA
Found at i:37930326 original size:22 final size:22
Alignment explanation
Indices: 37930301--37930342 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
37930291 GTTTCACATT
* *
37930301 CATTTTCATACCAAAAACATAC
1 CATTTCCATAACAAAAACATAC
*
37930323 CATTTCCATAACTAAAACAT
1 CATTTCCATAACAAAAACAT
37930343 TACTAACTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (22 bp):
CATTTCCATAACAAAAACATAC
Found at i:37931104 original size:12 final size:13
Alignment explanation
Indices: 37931068--37931105 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
37931058 AAATATTTGA
37931068 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
37931081 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
37931095 CTTG-TCTTAAT
1 CTTGTTCTTAAT
37931106 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:37936945 original size:11 final size:11
Alignment explanation
Indices: 37936932--37936968 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
37936922 TTTAAGTACT
37936932 TTTTATTTT-A
1 TTTTATTTTAA
37936942 TTTTATTTTAA
1 TTTTATTTTAA
*
37936953 TATTATTTTAA
1 TTTTATTTTAA
37936964 TTTTA
1 TTTTA
37936969 GGTTCTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTATTTTAA
Found at i:37939423 original size:12 final size:13
Alignment explanation
Indices: 37939387--37939424 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
37939377 AAATATTTGA
37939387 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
37939400 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
37939414 CTTG-TCTTAAT
1 CTTGTTCTTAAT
37939425 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:37940745 original size:42 final size:43
Alignment explanation
Indices: 37940677--37940797 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 43
37940667 AAAGCTCGTA
* * *
37940677 CAATGCCACTGTCCCAGGCAGGGTCTTACACGAAATCA-AA-T
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAAGT
* ** *
37940718 ACGATGCTGATGTCCCAGACATGGTCTTACATGTAAATCATAAGT
1 -CAATGCCAATGTCCCAGACATGGTCTTACACG-AAATCATAAGT
** *
37940763 CAATGCCAACATCCCAGACGTGGTCTTACACGAAA
1 CAATGCCAATGTCCCAGACATGGTCTTACACGAAA
37940798 ACACATATCG
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 25 0.40
43 9 0.15
44 27 0.44
45 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAAGT
Found at i:37941571 original size:12 final size:12
Alignment explanation
Indices: 37941554--37941580 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
37941544 ATAAGCATGG
37941554 AAAATAATATTT
1 AAAATAATATTT
37941566 AAAATAATATTT
1 AAAATAATATTT
37941578 AAA
1 AAA
37941581 TATTTTCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAAATAATATTT
Found at i:37943822 original size:24 final size:23
Alignment explanation
Indices: 37943779--37943824 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 23
37943769 TTTATGGTTT
37943779 AAAATTTCACGAAATTATTTCGTG
1 AAAATTTCACGAAA-TATTTCGTG
37943803 AAAATTTCATTCGAAA-ATTTCG
1 AAAATTTCA--CGAAATATTTCG
37943825 ACATTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
24 15 0.75
26 5 0.25
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (23 bp):
AAAATTTCACGAAATATTTCGTG
Found at i:37947038 original size:48 final size:48
Alignment explanation
Indices: 37946970--37947244 Score: 401
Period size: 48 Copynumber: 5.7 Consensus size: 48
37946960 CCATGCTAAA
37946970 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
* *
37947018 TGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
* * *
37947066 TGTGCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATT
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
*
37947114 TGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATG
1 TGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
** *
37947162 TGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGAAATGATATG
1 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
** * *
37947210 TG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 TGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
37947245 TGGTATTTTA
Statistics
Matches: 207, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 2 0.01
48 204 0.99
49 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (48 bp):
TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATG
Found at i:37951471 original size:10 final size:10
Alignment explanation
Indices: 37951445--37951474 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
37951435 CGCGAATCTG
*
37951445 TCAAAAATAA
1 TCAAAATTAA
37951455 TCAAAATTAA
1 TCAAAATTAA
37951465 TCAAAATTAA
1 TCAAAATTAA
37951475 GTATAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:37958900 original size:40 final size:40
Alignment explanation
Indices: 37958814--37958907 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
37958804 TCAACTATGT
*
37958814 TGGCACTTAGTGTGAGTTTCGAGATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGAGATTCGAGATAGCTTCGGCTATATA
* * * *
37958854 TAGCACTTAGTGTGCGAATTGGA-ATAGCTTTGGCTATATGA
1 TGGCACTTAGTGTGAG-ATTCGAGATAGCTTCGGCTATAT-A
*
37958895 -GGCACTAAGTGTG
1 TGGCACTTAGTGTG
37958908 TGATACTAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
40 40 0.89
41 5 0.11
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGAGATTCGAGATAGCTTCGGCTATATA
Found at i:37963255 original size:14 final size:15
Alignment explanation
Indices: 37963231--37963272 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
37963221 TACTTAGTTT
*
37963231 AAATCTTAATTAATC
1 AAATATTAATTAATC
*
37963246 AAA-ATTAATTAATT
1 AAATATTAATTAATC
*
37963260 AAATCTTAATTAA
1 AAATATTAATTAA
37963273 CTAAACATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATATTAATTAATC
Found at i:37963270 original size:15 final size:15
Alignment explanation
Indices: 37963229--37963277 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
37963219 TATACTTAGT
37963229 TTAAATCTTAATTAA
1 TTAAATCTTAATTAA
* *
37963244 TCAAA-ATTAATTAA
1 TTAAATCTTAATTAA
37963258 TTAAATCTTAATTAA
1 TTAAATCTTAATTAA
*
37963273 CTAAA
1 TTAAA
37963278 CATTAATCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAATCTTAATTAA
Found at i:37964538 original size:30 final size:25
Alignment explanation
Indices: 37964474--37964523 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
37964464 ATTGATTATG
37964474 AATGAGAATTTTTTTACCATTCCAA
1 AATGAGAATTTTTTTACCATTCCAA
37964499 AATGAGAATTTTTTTACCATTCCAA
1 AATGAGAATTTTTTTACCATTCCAA
37964524 GTATGCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (25 bp):
AATGAGAATTTTTTTACCATTCCAA
Found at i:37967660 original size:55 final size:54
Alignment explanation
Indices: 37967556--37967747 Score: 212
Period size: 55 Copynumber: 3.5 Consensus size: 54
37967546 GGGTTTCAGG
* * *
37967556 ATACCGTGTAAGACCATGCCAAGGCATGGCTATTGGTAAGGTT-TCTAAGGCAAGA
1 ATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGGCAAGA
* * *
37967611 ATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG-AA-A
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGCAAGA
* * *
37967664 AGGTCCCATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGG
1 A--TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGA
* *
37967719 ATACCATGTAAGACCATGTCGAGACATGG
1 ATACCATGTAAGACCATGCCAAGACATGG
37967748 AAATGGCAAG
Statistics
Matches: 116, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
53 36 0.31
54 12 0.10
55 68 0.59
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGA
Found at i:37967759 original size:108 final size:110
Alignment explanation
Indices: 37967562--37967759 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
37967552 CAGGATACCG
* *
37967562 TGTAAGACCATGCCAAGGCATGGCTATTGGTAAGGTTTCTAAGGCAAGAATATCATGTAAGACCA
1 TGTAAGACCATGCCAAGACATGGCTATTGGTAAGGTTTCTAAGGCAAGAATACCATGTAAGACCA
* * *
37967627 TGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTCCCA
66 TGTCAAGACATGGAAATGACAAGTTACTATAAGGAAAAGGTCCCA
* *
37967672 TGTAAGACCATGCCAAGACATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACC
1 TGTAAGACCATGCCAAGACATGGCTATTGGTAAGGTTTC-TAAGGCAAGAATACCATGTAAGACC
* *
37967734 ATGTCGAGACATGGAAATGGCAAGTT
65 ATGTCAAGACATGGAAATGACAAGTT
37967760 TAAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 7 0.09
110 23 0.29
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGACATGGCTATTGGTAAGGTTTCTAAGGCAAGAATACCATGTAAGACCA
TGTCAAGACATGGAAATGACAAGTTACTATAAGGAAAAGGTCCCA
Found at i:37969243 original size:79 final size:79
Alignment explanation
Indices: 37969132--37969354 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 79
37969122 GCTCCTCGTT
* * *
37969132 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTATCCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
37969196 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
37969212 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37969275 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * *
37969290 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
37969352 GGA
63 GGA
37969355 CATCATCCAA
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 57 0.45
80 23 0.18
81 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:37969249 original size:39 final size:40
Alignment explanation
Indices: 37969132--37969354 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
37969122 GCTCCTCGTT
* *
37969132 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37969172 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37969212 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37969251 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
37969290 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
37969331 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37969355 CATCATCCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37970451 original size:14 final size:14
Alignment explanation
Indices: 37970432--37970458 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37970422 AGGATGAGCA
37970432 TTTTTTTTTCTTTG
1 TTTTTTTTTCTTTG
37970446 TTTTTTTTTCTTT
1 TTTTTTTTTCTTT
37970459 CTAGTTTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.04, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTCTTTG
Found at i:37977211 original size:79 final size:78
Alignment explanation
Indices: 37977100--37977323 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 78
37977090 GCTCCTCGTT
* * *
37977100 CAAATGCCTTCGGGACATAGCCGGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCC-GGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
37977165 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
37977180 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCTG
1 CAAATGCCTTCGGGCTTAG-CCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCG
*
37977242 GAATTAGTATCTCGCA
63 GAATTAGTAACTCGCA
* * * * *
37977258 CAAATGCCTTCGGATCTTAGTCCGGGTATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAG-CCGGATATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
37977322 GA
63 GA
37977324 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
78 37 0.30
79 50 0.41
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:37977217 original size:39 final size:40
Alignment explanation
Indices: 37977100--37977323 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
37977090 GCTCCTCGTT
* **
37977100 CAAATGCCTTCGGGACATAG-CCGGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37977140 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37977180 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
37977219 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * *
37977258 CAAATGCCTTC-GGATCTTAGTCCGG-GTATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TCGCA
37977299 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37977324 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 68 0.42
41 18 0.11
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37978417 original size:13 final size:13
Alignment explanation
Indices: 37978399--37978423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37978389 GGATGAGCAT
37978399 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
37978412 TTTTTTTTCTTT
1 TTTTTTTTCTTT
37978424 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:37980068 original size:57 final size:58
Alignment explanation
Indices: 37980005--37980113 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 58
37979995 GCATGAATAT
*
37980005 AATGTGATTTGGGCCGGATGGGCCATATAAATGAG-ATTGGGCCTA-ATGGGCCCTATG
1 AATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTGGGCC-AGATGGGCCCTATG
* * *
37980062 AATGTGAATTGGGCCTGATGGGCCATATGAATGTGAATTGGGCCAGATGGGC
1 AATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTGGGCCAGATGGGC
37980114 TTTATAAAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
57 32 0.70
58 14 0.30
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.26
Consensus pattern (58 bp):
AATGTGAATTGGGCCGGATGGGCCATATAAATGAGAATTGGGCCAGATGGGCCCTATG
Found at i:37980082 original size:29 final size:29
Alignment explanation
Indices: 37980001--37980147 Score: 149
Period size: 29 Copynumber: 5.2 Consensus size: 29
37979991 GTGAGCATGA
* *
37980001 ATAT-AATGTGATTTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
37980029 ATATAAATGAG-ATTGGGCCTAATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
37980057 CTATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
37980086 ATATGAATGTGAATTGGGCCAGATGGGCT
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * *
37980115 TTATAAAAGAG-ATTGGGCCT-AGTGGGCC
1 ATATGAATGTGAATTGGGCCTGA-TGGGCC
37980143 ATATG
1 ATATG
37980148 CAGGTATGTA
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
27 1 0.01
28 42 0.43
29 54 0.56
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:37980130 original size:57 final size:57
Alignment explanation
Indices: 37980013--37980147 Score: 150
Period size: 57 Copynumber: 2.4 Consensus size: 57
37980003 ATAATGTGAT
* * * * *
37980013 TTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCCTATGAATGTGAA
1 TTGGGCCTGATGGGCCATATGAATGAGATTGGGCCTAATGGGCCCTATAAAAGAGAA
* **
37980070 TTGGGCCTGATGGGCCATATGAATGTGAATTGGGCC-AGATGGGCTTTATAAAAGAG-A
1 TTGGGCCTGATGGGCCATATGAATGAG-ATTGGGCCTA-ATGGGCCCTATAAAAGAGAA
37980127 TTGGGCCT-AGTGGGCCATATG
1 TTGGGCCTGA-TGGGCCATATG
37980148 CAGGTATGTA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
56 1 0.01
57 45 0.67
58 21 0.31
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (57 bp):
TTGGGCCTGATGGGCCATATGAATGAGATTGGGCCTAATGGGCCCTATAAAAGAGAA
Found at i:37985485 original size:48 final size:48
Alignment explanation
Indices: 37985420--37985820 Score: 570
Period size: 48 Copynumber: 8.1 Consensus size: 48
37985410 GCTGAAATTG
*
37985420 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
37985468 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGTCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
37985516 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
37985566 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-AT
*
37985620 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
37985668 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-AT
* * * *
37985720 ATATATGAGATATGTATATGTGGTAAAGCCGAGTGACTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
37985768 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
37985816 ATGTA
1 ATGTA
37985821 GGCGATGTGT
Statistics
Matches: 322, Mismatches: 19, Indels: 24
0.88 0.05 0.07
Matches are distributed among these distances:
47 1 0.00
48 183 0.57
49 4 0.01
50 46 0.14
51 1 0.00
52 39 0.12
53 2 0.01
54 46 0.14
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:37985687 original size:152 final size:148
Alignment explanation
Indices: 37985427--37985820 Score: 623
Period size: 152 Copynumber: 2.6 Consensus size: 148
37985417 TTGATGTATA
37985427 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
37985492 AAAGCCGAATGTCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAA
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AA
37985556 TGTG-AA-ATATATATATG
130 TGTGAAATATATATATATG
* * *
37985573 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATATGAGATATGTATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATGAGATATGTATA
37985638 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATG
60 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATG
37985703 GTCAATGTGAAATATATATATATG
125 GTCAATGTGAAATATATATATATG
* * *
37985727 AGATATGTATATGTGGTAAAGCCGAGTGACTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
37985792 AAAGCCGAATGGCTAGTGTGAAATATGTA
66 AAAGCCGAATGGCTAATGTGAAATATGTA
37985821 GGCGATGTGT
Statistics
Matches: 227, Mismatches: 12, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
146 35 0.15
148 53 0.23
149 1 0.00
150 2 0.01
151 1 0.00
152 89 0.39
153 3 0.01
154 43 0.19
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (148 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAAT
GTGAAATATATATATATG
Found at i:37985773 original size:100 final size:101
Alignment explanation
Indices: 37985427--37985817 Score: 618
Period size: 100 Copynumber: 3.9 Consensus size: 101
37985417 TTGATGTATA
37985427 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
37985492 AAAGCCGAAT-GTCTAATGTG--A-A-ATATGTATG
66 AAAGCCGAATGGTCTAATGTGAAATATATATATATG
*
37985523 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
*
37985588 GTAAAGCTGAATGGT-TAATGTGAAATATATATATATATG
64 GTAAAGCCGAATGGTCTAATGTG-AA-ATATATATATATG
*
37985627 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
37985692 AAAGCCGAATGGTC-AATGTGAAATATATATATATG
66 AAAGCCGAATGGTCTAATGTGAAATATATATATATG
* * *
37985727 AGATATGTATATGTGGTAAAGCCGAGTGACTAGTGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
37985792 AAAGCCGAATGG-CTAGTGTGAAATAT
66 AAAGCCGAATGGTCTAATGTGAAATAT
37985818 GTAGGCGATG
Statistics
Matches: 273, Mismatches: 11, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
96 37 0.14
97 2 0.01
98 41 0.15
99 3 0.01
100 97 0.36
101 2 0.01
102 43 0.16
103 3 0.01
104 45 0.16
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (101 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGTCTAATGTGAAATATATATATATG
Found at i:37986112 original size:37 final size:37
Alignment explanation
Indices: 37985967--37986111 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
37985957 GGAAATATAT
37985967 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37986004 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37986041 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37986078 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
37986112 TCATCTGCGC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:38000181 original size:47 final size:47
Alignment explanation
Indices: 38000123--38000417 Score: 457
Period size: 47 Copynumber: 6.3 Consensus size: 47
38000113 ACAAGATATG
38000123 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
38000170 TATATGAGATAAGACCTAATGGCCAGTGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
38000217 TATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
38000264 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
38000311 TATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
38000358 TATATGTGATAAGGCCGAATGGCCAATGTGATTG-ATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGA-TGAATGTGAAAGTGTA
*
38000405 TAAATGTGATAAG
1 TATATGTGATAAG
38000418 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 225 0.99
48 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:38000224 original size:25 final size:25
Alignment explanation
Indices: 38000196--38000272 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
38000186 TAATGGCCAG
38000196 TGTGATGAATGTGAAAGTGTATATA
1 TGTGATGAATGTGAAAGTGTATATA
* ***
38000221 TGTGAT-AAGGCTG-AA-TGGCCA-A
1 TGTGATGAATG-TGAAAGTGTATATA
38000243 TGTGATGAATGTGAAAGTGTATATA
1 TGTGATGAATGTGAAAGTGTATATA
38000268 TGTGA
1 TGTGA
38000273 CAAGGCCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 9 0.23
23 8 0.21
24 8 0.21
25 14 0.36
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (25 bp):
TGTGATGAATGTGAAAGTGTATATA
Found at i:38007768 original size:40 final size:40
Alignment explanation
Indices: 38007698--38007865 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
38007688 CGGGGTTTAT
** * *
38007698 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
38007737 CCGGATATGGTCACTA-CAATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGC-ACAAATGCCTTCGGGTCTTAAC
* * **
38007777 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
38007817 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
38007858 CCGGATAT
1 CCGGATAT
38007866 CATTCGAGTA
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 61 0.58
41 30 0.29
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:38007848 original size:41 final size:40
Alignment explanation
Indices: 38007721--38007865 Score: 170
Period size: 40 Copynumber: 3.6 Consensus size: 40
38007711 CTCGCACAAG
* * * *
38007721 GCCTTCGGGTCTTAACCCGGATATGGTCACTA-CA-ATAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACA-AAA
*
38007760 TGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 -GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
* *
38007801 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAA
38007842 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
38007866 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 3 0.03
40 52 0.58
41 31 0.34
42 4 0.04
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAA
Found at i:38011297 original size:47 final size:47
Alignment explanation
Indices: 38011238--38011631 Score: 612
Period size: 47 Copynumber: 8.4 Consensus size: 47
38011228 GATGTACAAG
* * *
38011238 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
38011285 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
38011332 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
38011379 GTGTATATATGTGATATGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
38011426 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
38011473 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
38011520 GTGTATATATGAGATAAGACCTAATGGCCGA-GATGATTG-ATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATG-TGA-TGAATGTGAAA
* * *
38011567 GTGTATACATGTGATGAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
38011614 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
38011632 TCCCGAAGGG
Statistics
Matches: 322, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
46 3 0.01
47 316 0.98
48 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:38015964 original size:39 final size:40
Alignment explanation
Indices: 38015921--38016088 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
38015911 CTCGTTCAAG
* * * *
38015921 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
38015960 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
38016000 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
38016040 GGCCTTCGGGACTTAACCCGAAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCG-GATTATAAAACTCACACGAA
38016080 TGCCTTCGG
1 TGCCTTCGG
38016089 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
39 26 0.24
40 79 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:38016010 original size:40 final size:39
Alignment explanation
Indices: 38015958--38016088 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 39
38015948 TAACTCATAC
* *
38015958 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
38015998 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
38016038 AAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
38016078 AATGCCTTCGG
1 AATGCCTTCGG
38016089 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:38016072 original size:80 final size:79
Alignment explanation
Indices: 38015956--38016139 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 79
38015946 AGTAACTCAT
* ** *
38015956 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCC-GAAATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
38016020 GA-ATTAGT-A-TCTCGC
64 GATA-TAGTCACT-TAGC
**
38016035 ACAAAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGAAATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCCG
38016100 GATATAGTCACTTAGC
64 GATATAGTCACTTAGC
*
38016116 ACAAAGCCTTCGGGACTTAGCCCG
1 ACAAAGCCTTCGGGACTTAACCCG
38016140 GACAGCATTC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.14
80 67 0.74
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGAAATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGC
Found at i:38021324 original size:20 final size:19
Alignment explanation
Indices: 38021296--38021333 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
38021286 GTCATACTCA
38021296 TTAGCCATGATT-CATTCAT
1 TTAGCCATG-TTCCATTCAT
38021315 TTAGCACATGTTCCATTCA
1 TTAGC-CATGTTCCATTCA
38021334 GCATACATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (19 bp):
TTAGCCATGTTCCATTCAT
Found at i:38022269 original size:13 final size:13
Alignment explanation
Indices: 38022251--38022276 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38022241 TGTGGACAAA
38022251 AATAGCCAATTTG
1 AATAGCCAATTTG
38022264 AATAGCCAATTTG
1 AATAGCCAATTTG
38022277 CCACCCCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATAGCCAATTTG
Found at i:38030547 original size:43 final size:43
Alignment explanation
Indices: 38030500--38030658 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
38030490 AACATATACA
* * *
38030500 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
** * * * * *
38030543 ATGCCATTGTCCCAAACAAGGTCTTACACGAAATTAGATA-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
* * *
38030585 ATGCCGATGTCCCAGACATAGTCTTACACGTAA--AACATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAA-A-AA-TCG
* *
38030629 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
38030659 AAAACACATA
Statistics
Matches: 90, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 30 0.33
43 31 0.34
44 27 0.30
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
Found at i:38030609 original size:42 final size:43
Alignment explanation
Indices: 38030508--38030614 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 43
38030498 CAATGCCAAC
* * * *
38030508 GTCCCAGACGTGGTCTTACATGTAATTAAACATCGATGCCATT
1 GTCCCAGACATAGTCTTACACGAAATTAAACATCGATGCCATT
* * *
38030551 GTCCCAAACA-AGGTCTTACACGAAATTAGATA-CGATGCCGA-T
1 GTCCCAGACATA-GTCTTACACGAAATTAAACATCGATGCC-ATT
38030593 GTCCCAGACATAGTCTTACACG
1 GTCCCAGACATAGTCTTACACG
38030615 TAAAACATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATAGTCTTACACGAAATTAAACATCGATGCCATT
Found at i:38033711 original size:27 final size:27
Alignment explanation
Indices: 38033647--38033837 Score: 204
Period size: 27 Copynumber: 7.0 Consensus size: 27
38033637 ATGTTATTCA
* *
38033647 TTCATATTACGCCAGAAAGGCTTTTTCT
1 TTCATTTTACGCCACAAAGGC-TTTTCT
**
38033675 TTCACATTACGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
*
38033702 TTCATTTTACGCCACAAAGGCTTTCCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* * ** * *
38033729 TTCACTTTATGTTATAATGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
38033756 TTCATTTTACGCCATAAAGACTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
38033783 TTAATTTTATGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
38033810 TTCATTTTATGCCATAAAGG-TTGTTCT
1 TTCATTTTACGCCACAAAGGCTT-TTCT
38033837 T
1 T
38033838 CTTGACTATA
Statistics
Matches: 138, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 117 0.85
28 19 0.14
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (27 bp):
TTCATTTTACGCCACAAAGGCTTTTCT
Found at i:38033755 original size:54 final size:54
Alignment explanation
Indices: 38033647--38033837 Score: 231
Period size: 54 Copynumber: 3.5 Consensus size: 54
38033637 ATGTTATTCA
* * * *
38033647 TTCATATTACGCCAGAAAGGCTTTTTCTTTCACATTACGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCATAAAGGC-TTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
* * ** * *
38033702 TTCATTTTACGCCACAAAGGCTTTCCTTTCACTTTATGTTATAATGGCTTTTCT
1 TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
* * *
38033756 TTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
*
38033810 TTCATTTTATGCCATAAAGG-TTGTTCTT
1 TTCATTTTACGCCATAAAGGCTT-TTCTT
38033838 CTTGACTATA
Statistics
Matches: 115, Mismatches: 20, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
53 2 0.02
54 94 0.82
55 19 0.17
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (54 bp):
TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
Found at i:38033768 original size:81 final size:81
Alignment explanation
Indices: 38033669--38033820 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
38033659 CAGAAAGGCT
* *
38033669 TTTTCTTTCACATTACGCCACAAAGGCTTTTCTTTCATTTTACGCCACAAAGGCTTTCCTTTCAC
1 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
38033734 TTTATGTTATAATGGC
66 TTTATGTTATAATGGC
** * * * *
38033750 TTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTCTTTCAT
1 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
38033815 TTTATG
66 TTTATG
38033821 CCATAAAGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (81 bp):
TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
TTTATGTTATAATGGC
Found at i:38033837 original size:81 final size:81
Alignment explanation
Indices: 38033647--38033837 Score: 231
Period size: 81 Copynumber: 2.3 Consensus size: 81
38033637 ATGTTATTCA
* * * * *
38033647 TTCATATTACGCCAGAAAGGCTTTTTCTTTCACATTACGCCACAAAGGCTTTTCTTTCATTTTAC
1 TTCATTTTATGCCATAAAGGC-TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTAC
38033712 GCCACAAAGGCTTTCCT
65 GCCACAAAGGCTTTCCT
* ** * ** * *
38033729 TTCACTTTATGTTATAATGGCTTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATG
1 TTCATTTTATGCCATAAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACG
*
38033794 CCACAAAGGCTTTTCT
66 CCACAAAGGCTTTCCT
38033810 TTCATTTTATGCCATAAAGG-TTGTTCTT
1 TTCATTTTATGCCATAAAGGCTT-TTCTT
38033838 CTTGACTATA
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
80 2 0.02
81 74 0.82
82 14 0.16
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (81 bp):
TTCATTTTATGCCATAAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACG
CCACAAAGGCTTTCCT
Found at i:38033866 original size:32 final size:32
Alignment explanation
Indices: 38033830--38033892 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
38033820 GCCATAAAGG
*
38033830 TTGTTCTTCTTGACTATATACAATATTAATTA
1 TTGTTCTTCATGACTATATACAATATTAATTA
*
38033862 TTGTTTTTCATGACTATATACAATATTAATT
1 TTGTTCTTCATGACTATATACAATATTAATT
38033893 TCCCTAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (32 bp):
TTGTTCTTCATGACTATATACAATATTAATTA
Found at i:38036176 original size:39 final size:40
Alignment explanation
Indices: 38036101--38036286 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
38036091 CGATATATTA
* * *
38036101 TATATCTGGGTTAAATCCCGCACGCTTCGTGCTGGTAATT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
38036141 TATATCCGGGTTAAA-CCCGCAGGTTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
38036180 TATATCCGGGTTAAATCCCCCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
38036220 TATATCCGGGTTAAATCTCGCAGGCTTAGTGCTGGT-A-C
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
38036258 TATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
38036287 TGAGCTAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 10 0.08
39 41 0.32
40 78 0.60
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:38036232 original size:79 final size:78
Alignment explanation
Indices: 38036101--38036273 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 78
38036091 CGATATATTA
* * * *
38036101 TATATCTGGGTTAAATCCCGCACGCTTCGTGCTGGTAATTTATATCCGGGTTAAA-CCCGCAGGT
1 TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
* * *
38036165 TTCGTGTTGGTAATG
66 TTAGTGCTGGT-A-C
* *
38036180 TATATCCGGGTTAAATCCCCCAGGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCTCGCAGGC
1 TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
38036245 TTAGTGCTGGTAC
66 TTAGTGCTGGTAC
38036258 TATATCCGGGCTTAAA
1 TATATCCGGG-TTAAA
38036274 GTTCCGCAGG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
78 10 0.12
79 57 0.69
80 16 0.19
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (78 bp):
TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
TTAGTGCTGGTAC
Found at i:38038559 original size:14 final size:14
Alignment explanation
Indices: 38038540--38038573 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
38038530 AAGTCTGCAC
38038540 TTAATTTCGAGAAT
1 TTAATTTCGAGAAT
*
38038554 TTAATTTTGAGAAT
1 TTAATTTCGAGAAT
38038568 TTAATT
1 TTAATT
38038574 CGCCACACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (14 bp):
TTAATTTCGAGAAT
Found at i:38040457 original size:43 final size:43
Alignment explanation
Indices: 38040375--38040460 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
38040365 GTACAAAGAC
* * *
38040375 AGGAGCTAGTTATAGGCATTTCATGCATGATAGGATGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
* * * *
38040418 AGGAACTAGTTAGAGGCGTGTCATTCATGGTAGGGTGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
38040461 TGTCTTTGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.29
Consensus pattern (43 bp):
AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
Found at i:38053033 original size:46 final size:45
Alignment explanation
Indices: 38052934--38053104 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 45
38052924 TCATCTCGTA
* * * * * * *
38052934 GCCGACGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGCCCT-CGTCTCAAT
* *
38052980 GCTGATGCATGTCCCAGACATGTCTCACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GCCCTCGTCTCAAT
* *
38053026 GCCGATGCCATGTCCTAGACATGGTCTTACACTG-GCTC-TCAT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGCCCTCGTC-TCAA--T
38053073 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
38053105 AGCTCGCACA
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
45 4 0.04
46 53 0.51
47 31 0.30
48 16 0.15
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGCCCTCGTCTCAAT
Found at i:38054865 original size:22 final size:23
Alignment explanation
Indices: 38054812--38054923 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 23
38054802 GTCATGGTCG
* *
38054812 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGCTG--AATCA
38054838 GTAAGCTCTATTGAGCTGAAT-A
1 GTAAGCTCTATTGAGCTGAATCA
*
38054860 GTAAGCTCT-TTCGAGCTGAATCG
1 GTAAGCTCTATT-GAGCTGAATCA
* * * *
38054883 GTAAGCTCCAATGAGCTTAAACA
1 GTAAGCTCTATTGAGCTGAATCA
*
38054906 GTAACCTCT-TTCGAGCTG
1 GTAAGCTCTATT-GAGCTG
38054924 TTGTGAGTCC
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
21 2 0.03
22 20 0.29
23 30 0.43
24 1 0.01
25 9 0.13
26 8 0.11
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAATCA
Found at i:38059888 original size:30 final size:30
Alignment explanation
Indices: 38059853--38059939 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
38059843 ACCCCAAGGG
*
38059853 ACACATAGCCGTGTA-ACATGACCGTGTGTC
1 ACACATAGCCGAG-ACACATGACCGTGTGTC
* * *
38059883 ACACATGGCTGAGACACATGATCGTGTGTC
1 ACACATAGCCGAGACACATGACCGTGTGTC
* * *
38059913 ACACATGGCTGAGACACATGCCCGTGT
1 ACACATAGCCGAGACACATGACCGTGT
38059940 TTCTACCCGT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (30 bp):
ACACATAGCCGAGACACATGACCGTGTGTC
Found at i:38060876 original size:24 final size:24
Alignment explanation
Indices: 38060840--38060886 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
38060830 CTGAGCTAAT
38060840 AAACAGTAAGCTCTATTGAGCTGG
1 AAACAGTAAGCTCTATTGAGCTGG
* *
38060864 AAACGGTACGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
38060887 AATAGTAGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (24 bp):
AAACAGTAAGCTCTATTGAGCTGG
Found at i:38060942 original size:23 final size:22
Alignment explanation
Indices: 38060873--38060953 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
38060863 GAAACGGTAC
*
38060873 GCTCTATT-GAGCTGAATAGTAG
1 GCTCT-TTCGAGCTGAATAGTAA
* * *
38060895 GCTCTTTCAACCTGAACAGTAA
1 GCTCTTTCGAGCTGAATAGTAA
*
38060917 GCTTTTTCGAGCTGAAATAGTAA
1 GCTCTTTCGAGCTG-AATAGTAA
38060940 GCTCTTAT-GAGCTG
1 GCTCTT-TCGAGCTG
38060954 TGGTGAGTCT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 2 0.04
22 26 0.55
23 18 0.38
24 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (22 bp):
GCTCTTTCGAGCTGAATAGTAA
Found at i:38064048 original size:29 final size:29
Alignment explanation
Indices: 38064013--38064086 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
38064003 GTTGTGAGAT
* *
38064013 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
38064042 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
38064071 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
38064087 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:38064461 original size:17 final size:17
Alignment explanation
Indices: 38064439--38064473 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
38064429 GATTGAATCG
38064439 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
38064456 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
38064473 T
1 T
38064474 GGCATAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (17 bp):
TAAGGTCTAAGAAACTA
Found at i:38076792 original size:28 final size:28
Alignment explanation
Indices: 38076752--38076809 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
38076742 CAAAAGTACA
38076752 ACAATATTTTAGAAAAGCCATTGGGATC
1 ACAATATTTTAGAAAAGCCATTGGGATC
38076780 ACAATATTTTAGAAAAGCCATTGGGATC
1 ACAATATTTTAGAAAAGCCATTGGGATC
38076808 AC
1 AC
38076810 TTACTTGTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (28 bp):
ACAATATTTTAGAAAAGCCATTGGGATC
Found at i:38090945 original size:43 final size:42
Alignment explanation
Indices: 38090859--38091003 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 42
38090849 TCCCGGAGAG
* * *
38090859 GGTCTTACATGAAATCGATTAACGATGCCAATGTCTTAGACAT
1 GGTCTTACATGTAATCGA-TAATGATGCCAATGTCCTAGACAT
* *
38090902 GGTCTTACATGTAATCGTATAATGATGCCAATGTCCCATACAT
1 GGTCTTACATGTAATCG-ATAATGATGCCAATGTCCTAGACAT
* * ** * *
38090945 GATATTACACATAATC-ACAATATAATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCGA-TA-ATGATGCCAATGTCCTAGACAT
38090988 GGTCTTACATGTAATC
1 GGTCTTACATGTAATC
38091004 TCATCTCGGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 79 0.96
44 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
GGTCTTACATGTAATCGATAATGATGCCAATGTCCTAGACAT
Found at i:38104408 original size:96 final size:96
Alignment explanation
Indices: 38104296--38104610 Score: 517
Period size: 96 Copynumber: 3.3 Consensus size: 96
38104286 TATTTGAATA
38104296 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
*
38104361 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
**
38104392 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
*
38104457 TATGTGATAAGGCCTAATGGCTAATGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
*
38104488 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
* * * * *
38104553 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCAATGTGATG
*
38104584 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
38104611 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 10 0.05
95 1 0.00
96 194 0.95
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:38104410 original size:49 final size:49
Alignment explanation
Indices: 38104296--38104610 Score: 457
Period size: 47 Copynumber: 6.6 Consensus size: 49
38104286 TATTTGAATA
**
38104296 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
38104345 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
38104392 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
38104441 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCTAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* **
38104488 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
38104537 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
38104584 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
38104611 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 14, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
47 140 0.57
48 1 0.00
49 105 0.43
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:38104486 original size:22 final size:22
Alignment explanation
Indices: 38104411--38104486 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
38104401 GTGTATATAT
*
38104411 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCTA
* *** **
38104433 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCTA
38104457 TATGTGATAAGGCCTAATGGCTA
1 -ATGTGATAAGGCCTAATGGCTA
38104480 ATGTGAT
1 ATGTGAT
38104487 GAATGTGAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 9 0.24
24 8 0.21
25 7 0.18
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCTA
Found at i:38111192 original size:47 final size:47
Alignment explanation
Indices: 38111139--38111671 Score: 805
Period size: 47 Copynumber: 11.2 Consensus size: 47
38111129 AATTCCAAAT
38111139 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
38111186 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
38111233 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
38111281 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
38111330 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATC
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
38111377 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
38111426 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
38111473 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
38111522 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * *
38111569 CGTGATAAGGCTTAATAGCCGATGTGATGAATGTGAAAGTGTACATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
38111616 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
38111663 TGTGATAAG
1 TGTGATAAG
38111672 TCCCGAAGGG
Statistics
Matches: 443, Mismatches: 36, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
47 264 0.60
48 45 0.10
49 134 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:38111386 original size:96 final size:96
Alignment explanation
Indices: 38111139--38111671 Score: 831
Period size: 96 Copynumber: 5.6 Consensus size: 96
38111129 AATTCCAAAT
*
38111139 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
38111204 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
*
38111233 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
38111298 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTGTATATATA
* *
38111330 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATCTGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
38111395 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
38111426 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
38111491 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* ** * *
38111522 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
*
38111587 CCGATGTGATGAATGTGAAAGTG--TACATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * * *
38111616 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
38111672 TCCCGAAGGG
Statistics
Matches: 413, Mismatches: 23, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
94 54 0.13
95 82 0.20
96 267 0.65
97 10 0.02
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:38111845 original size:37 final size:37
Alignment explanation
Indices: 38111789--38111867 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
38111779 TCGAGCTCTA
* * *
38111789 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
* *
38111826 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
38111863 AAGAC
1 AAGAC
38111868 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:38113780 original size:43 final size:43
Alignment explanation
Indices: 38113732--38114006 Score: 505
Period size: 43 Copynumber: 6.4 Consensus size: 43
38113722 TTGGTTTTCA
*
38113732 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
38113775 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
38113818 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
*
38113861 GCACTAAGTGTGCGGGCAATCAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
38113904 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
* *
38113947 GCACTAAGTGTGCGGGCAATAAGTATTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
38113990 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
38114007 TTGAAATGCA
Statistics
Matches: 227, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 227 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGCGAGATTG
Found at i:38114110 original size:40 final size:40
Alignment explanation
Indices: 38114055--38114292 Score: 379
Period size: 40 Copynumber: 6.0 Consensus size: 40
38114045 AAGCACTATG
*
38114055 TGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
38114095 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
*
38114135 TGTGCGAATTGATATATTCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
*
38114175 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
*
38114215 TGTGC-AAGTTGATACATCCGGGCTAAGACCCGAAGGCATT
1 TGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * *
38114255 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCA
38114293 ATTGAGCTTG
Statistics
Matches: 184, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 181 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TGTGCGAATTGATATATCCGGGCTAAGACCCGAAGGCATT
Found at i:38114311 original size:120 final size:120
Alignment explanation
Indices: 38114058--38114335 Score: 360
Period size: 120 Copynumber: 2.3 Consensus size: 120
38114048 CACTATGTGT
* * * *
38114058 GCGAATTGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGA
1 GCGAATGGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATACATCCGGGCTAAGA
* ** * *
38114123 CCCGAAGGCATTTGTGCGAATTGATATATTCGGGCTAAGACCCGAAGGCATTTGT
66 CCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAGGCAATTGA
*
38114178 GCGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATACATCCGGGCTAAG
1 GCGAATGGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAA-TTGATACATCCGGGCTAAG
* * *
38114242 ACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGA
65 ACCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAGGCAATTGA
*** * * *
38114298 GCTTGTGGTTATATCCGGGCTAGGTCCCGAAGAGCAAT
1 GCGAATGGATATATCCGGGCTAAGACCCGAAG-GCAAT
38114336 CATGCTGGTG
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
119 2 0.01
120 131 0.95
121 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
GCGAATGGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATTGATACATCCGGGCTAAGA
CCCGAAGGCATTCGTGCGAATTGATATACCCGGGCTAAGACCCGAAGGCAATTGA
Found at i:38114314 original size:80 final size:80
Alignment explanation
Indices: 38114055--38114329 Score: 374
Period size: 80 Copynumber: 3.4 Consensus size: 80
38114045 AAGCACTATG
*
38114055 TGTGCGAA-TTGATATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCT
*
38114119 AAGACCCGAAGGCATT
65 AAGACCCGAAGGCAAT
*
38114135 TGTGCGAA-TTGATATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCT
38114199 AAGACCCGAAGGCAAT
65 AAGACCCGAAGGCAAT
* * * * * *
38114215 TGTGCAAGTTGATACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTA
1 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTA
38114280 AGACCCGAAGGCAAT
66 AGACCCGAAGGCAAT
* ** * * * *
38114295 TGAGCTTGTGGTTATATCCGGGCTAGGTCCCGAAG
1 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAG
38114330 AGCAATCATG
Statistics
Matches: 176, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
79 2 0.01
80 174 0.99
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (80 bp):
TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTA
AGACCCGAAGGCAAT
Found at i:38114327 original size:40 final size:40
Alignment explanation
Indices: 38114055--38114335 Score: 320
Period size: 40 Copynumber: 7.0 Consensus size: 40
38114045 AAGCACTATG
* *
38114055 TGTGCGAA-TTGATATATCCGGGATAAGACCCGAAGGCATT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
*
38114095 TGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCATT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
* *
38114135 TGTGCGAA-TTGATATATTCGGGCTAAGACCCGAAGGCATT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
38114175 TGTGCGAA-TTGATATATCCGGGCTAAGACCCGAAGGCAAT
1 TGTGC-AAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
*
38114215 TGTGCAAGTTGATACATCCGGGCTAAGACCCGAAGGC-AT
1 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
* * * *
38114254 TCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAAT
1 T-GTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
* ** * * * *
38114295 TGAGCTTGTGGTTATATCCGGGCTAGGTCCCGAAGAGCAAT
1 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAG-GCAAT
38114336 CATGCTGGTG
Statistics
Matches: 218, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 5 0.02
40 205 0.94
41 8 0.04
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCAAT
Found at i:38117956 original size:47 final size:47
Alignment explanation
Indices: 38117903--38118431 Score: 815
Period size: 47 Copynumber: 11.1 Consensus size: 47
38117893 CTAAATTGTA
38117903 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* *
38117950 ATAAGGCTTAATGGCCGATGTGACGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
38117997 AATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
38118045 ATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
38118094 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
38118141 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
* * *
38118190 ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
38118237 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
* **
38118286 ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
38118333 ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * * *
38118380 ACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
38118427 ATAAG
1 ATAAG
38118432 TCCCGAAGGG
Statistics
Matches: 443, Mismatches: 32, Indels: 14
0.91 0.07 0.03
Matches are distributed among these distances:
47 264 0.60
48 44 0.10
49 135 0.30
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:38118146 original size:96 final size:96
Alignment explanation
Indices: 38117903--38118431 Score: 841
Period size: 96 Copynumber: 5.5 Consensus size: 96
38117893 CTAAATTGTA
*
38117903 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
*
38117968 TGTGACGAATGTGAAAGTG--TATATATGTG
66 TGTGATGAATGTGAAAGTGTATATATATGTG
* *
38117997 AATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCG
1 -ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
38118062 ATGTGATGAATGTGAAAGTGTATATATATGTG
65 ATGTGATGAATGTGAAAGTGTATATATATGTG
38118094 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
38118159 TGTGATGAATGTGAAAGTGTATATATATGTG
66 TGTGATGAATGTGAAAGTGTATATATATGTG
* * * *
38118190 ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
38118255 TGTGATGAATGTGAAAGTGTATATATATGTG
66 TGTGATGAATGTGAAAGTGTATATATATGTG
* ** *
38118286 ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGA
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
38118351 TGTGATGAATGTGAAAGTG--TATATATGTG
66 TGTGATGAATGTGAAAGTGTATATATATGTG
* * * * * * * *
38118380 ACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
38118432 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
94 51 0.13
95 80 0.20
96 266 0.65
97 10 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATATGTG
Found at i:38118605 original size:37 final size:37
Alignment explanation
Indices: 38118549--38118627 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
38118539 TCGAAGTCTA
* * *
38118549 AAGACCCAATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
* *
38118586 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
38118623 AAGAC
1 AAGAC
38118628 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:38120534 original size:32 final size:32
Alignment explanation
Indices: 38120493--38120562 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
38120483 TTAGGCGTTG
38120493 GCAAATTATGATTTTATTAGATCATGTTTTAA
1 GCAAATTATGATTTTATTAGATCATGTTTTAA
38120525 GCAAATTATGATTTTATTAGATCATGTTTTAA
1 GCAAATTATGATTTTATTAGATCATGTTTTAA
38120557 GCAAAT
1 GCAAAT
38120563 CAAAATCATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (32 bp):
GCAAATTATGATTTTATTAGATCATGTTTTAA
Found at i:38120793 original size:40 final size:39
Alignment explanation
Indices: 38120749--38120840 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
38120739 CATATTCGGA
* **
38120749 CTAAGATCCGAAGCCATTTGTGCGAGTTACTAATTCCGGG
1 CTAAG-TCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
* *
38120789 CTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAACCGGG
1 CTAAGTCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
38120828 CTAAGTCCCGAAG
1 CTAAGT-CCGAAG
38120841 AGCATTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.76
40 11 0.24
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CTAAGTCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
Found at i:38120811 original size:39 final size:40
Alignment explanation
Indices: 38120703--38120891 Score: 154
Period size: 40 Copynumber: 4.7 Consensus size: 40
38120693 TTGAATGATG
* * *
38120703 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
38120744 T-CGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
38120783 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * * **
38120822 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* *
38120862 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGC
38120892 TAGTGAGGTA
Statistics
Matches: 122, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
39 37 0.30
40 64 0.52
41 21 0.17
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:38120867 original size:40 final size:40
Alignment explanation
Indices: 38120823--38120977 Score: 184
Period size: 40 Copynumber: 3.9 Consensus size: 40
38120813 GTTACTAAAA
*
38120823 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
38120863 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * *
38120903 CCGAACTAAGTTCCAAAGAGCATTCGTGCTAGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
38120943 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
38120978 CGTGTATTCG
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:38124320 original size:49 final size:49
Alignment explanation
Indices: 38124251--38124495 Score: 381
Period size: 49 Copynumber: 5.1 Consensus size: 49
38124241 GAAATGATAG
38124251 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
38124300 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
38124349 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
38124396 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
38124445 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
38124492 TAAG
1 TAAG
38124496 TCCCGAAGGG
Statistics
Matches: 181, Mismatches: 13, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
47 53 0.29
48 1 0.01
49 127 0.70
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:38124424 original size:96 final size:96
Alignment explanation
Indices: 38124254--38124495 Score: 394
Period size: 96 Copynumber: 2.5 Consensus size: 96
38124244 ATGATAGTAA
38124254 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
*
38124319 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTGTATATATATGTGACAG
38124352 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
38124417 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGACAG
* * * * * *
38124448 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
38124496 TCCCGAAGGG
Statistics
Matches: 136, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
96 103 0.76
98 33 0.24
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGACAG
Found at i:38124670 original size:37 final size:37
Alignment explanation
Indices: 38124614--38124692 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38124604 CCGAGCTCTA
* * *
38124614 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
38124651 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
38124688 AAGAC
1 AAGAC
38124693 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:38133831 original size:34 final size:34
Alignment explanation
Indices: 38133788--38133853 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
38133778 ATTTCAGTTA
* *
38133788 GGGCCTTAGCTCATTACAGTATCAGTATTAGTGT
1 GGGCCTTAGCCCATTACAGTATCAGTAATAGTGT
*
38133822 GGGCCTTAGCCCATTACAGTATTAGTAATAGT
1 GGGCCTTAGCCCATTACAGTATCAGTAATAGT
38133854 AAAGAATGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTATCAGTAATAGTGT
Found at i:38136724 original size:93 final size:93
Alignment explanation
Indices: 38136565--38136751 Score: 293
Period size: 93 Copynumber: 2.0 Consensus size: 93
38136555 TAAGTATAGG
* * *
38136565 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGCCCACTATCTGAAGCATTTGGAACATGACTGG
1 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
*
38136630 CTTCAGCTCGAACTGTTGTGCCTCAATT
66 CTTCAGCTCGAACTATTGTGCCTCAATT
* * * *
38136658 TGAGGATCTTCAGTAGGCATTCTACTGAATTGGACCACTATCTGAAACATCTGGAACATGATTGG
1 TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
*
38136723 CTTTAGCTCGAACTATTGTGCCTCAATT
66 CTTCAGCTCGAACTATTGTGCCTCAATT
38136751 T
1 T
38136752 CAAGTCTCCT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (93 bp):
TGAGGATCTTCAATAGGCAGTCCACTGAATTGGACCACTATCTGAAACATCTGGAACATGACTGG
CTTCAGCTCGAACTATTGTGCCTCAATT
Found at i:38148273 original size:25 final size:25
Alignment explanation
Indices: 38148238--38148308 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
38148228 GGAGGTAATG
38148238 CAAAAGGGCTTTTACCCAGTTTA-C
1 CAAAAGGGCTTTTACCCAGTTTATC
**
38148262 CGAAAAGGGCTTTGCCCCAGTTTATC
1 C-AAAAGGGCTTTTACCCAGTTTATC
*
38148288 CAAAAGGG-ATTTACCCCAGTT
1 CAAAAGGGCTTTTA-CCCAGTT
38148309 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 3 0.08
25 34 0.87
26 2 0.05
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (25 bp):
CAAAAGGGCTTTTACCCAGTTTATC
Found at i:38148563 original size:30 final size:31
Alignment explanation
Indices: 38148529--38148611 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
38148519 CATTTACAGT
*
38148529 AAAGGCTTTGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
38148559 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
38148590 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
38148612 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 25 0.52
31 23 0.48
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:38148594 original size:31 final size:30
Alignment explanation
Indices: 38148529--38148606 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
38148519 CATTTACAGT
* *
38148529 AAAGGCTTTGGCCCAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
38148559 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
38148590 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
38148607 ATATGTTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 21 0.48
31 23 0.52
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:38152903 original size:47 final size:45
Alignment explanation
Indices: 38152835--38153090 Score: 170
Period size: 47 Copynumber: 5.5 Consensus size: 45
38152825 TATGTGTGCT
38152835 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CACATTATGAGAGCC
* * *
38152881 AGTGTAAGACCATGTCTGGGACATGGCATCG--GCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACACATT---ATGAGAGCC
* * * * *
38152929 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGA-GATGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGACAC-ATTATG-AGAGCC
* * * * *
38152975 AGTGTAAGACATGTCTGGAACATGCATCGGCTACATGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGAC-ACATTATGAGAGCC
*
38153019 AGTGTAAGACCATGTCTGGGACATGGCAT-GA-AC-TTAACGTGAGAACC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACACATT-A--TGAGAGCC
*
38153066 AGTGTAAGACCATGTCTTGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
38153091 GTATCAGCAT
Statistics
Matches: 167, Mismatches: 23, Indels: 40
0.73 0.10 0.17
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 10 0.06
45 23 0.14
46 50 0.30
47 56 0.34
48 22 0.13
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACACATTATGAGAGCC
Found at i:38152989 original size:46 final size:46
Alignment explanation
Indices: 38152835--38153043 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 46
38152825 TATGTGTGCT
* * *
38152835 AGTGTAAGACATGTCTGGGACATGCA-TCGACCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTAG-CCTCGA-GATGAGAGCC
** * * * *
38152881 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTAGCCTCGAGATGAGAGCC
*
38152929 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATG-AGAGCC
* * * * * *
38152975 AGTGTAAGACATGTCTGGAACATGCA-TCGGCT--ACATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGA-GAGCC
38153019 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
38153044 GCATGAACTT
Statistics
Matches: 132, Mismatches: 23, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 10 0.08
45 18 0.14
46 48 0.36
47 29 0.22
48 20 0.15
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGAGAGCC
Found at i:38154108 original size:28 final size:28
Alignment explanation
Indices: 38154068--38154123 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
38154058 ACACTGGGTA
38154068 GGACACGTGC-GTGTCATGGCCGTGTGAG
1 GGACACGTGCGGTGTCA-GGCCGTGTGAG
38154096 GGACACAG-GCGTGTGTCAGGCCGTGTGA
1 GGACAC-GTGCG-GTGTCAGGCCGTGTGA
38154124 AAACCCCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 8 0.32
29 11 0.44
30 6 0.24
ACGTcount: A:0.16, C:0.21, G:0.43, T:0.20
Consensus pattern (28 bp):
GGACACGTGCGGTGTCAGGCCGTGTGAG
Found at i:38155954 original size:93 final size:93
Alignment explanation
Indices: 38155795--38155966 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
38155785 GGATGATTGA
* *
38155795 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCTGAGCTCGTTGAGT
38155860 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
38155888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCTGAGCTCGTTGAGT
38155953 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
38155967 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGCCTGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:38155971 original size:46 final size:46
Alignment explanation
Indices: 38155807--38155973 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
38155797 ATCCGAACTT
* * *
38155807 GTTGAGTTGAGTCCGAGTTCACTTAAGGATGCGAACGTCTGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTC
* * * *
38155853 GTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCATCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---GC--CTGAGCTC
38155900 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTC
1 GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTC
*
38155946 GTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GTTGAGTTGAGTCCGAGTTCACTTATGG
38155974 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 53 0.52
47 26 0.26
48 4 0.04
50 5 0.05
51 3 0.03
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCTGAGCTC
Found at i:38163429 original size:46 final size:45
Alignment explanation
Indices: 38163379--38163548 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
38163369 AGCATCCGAA
38163379 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGCCTGAG
* * * * *
38163425 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---GC--CTGAG
*
38163472 CTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACGCCTGAG
*
38163518 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38163549 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 55 0.54
47 25 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACGCCTGAG
Found at i:38163529 original size:93 final size:93
Alignment explanation
Indices: 38163370--38163541 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
38163360 GGATGATTGA
38163370 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
38163435 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
38163463 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
38163528 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
38163542 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:38170968 original size:46 final size:46
Alignment explanation
Indices: 38170821--38171029 Score: 196
Period size: 46 Copynumber: 4.5 Consensus size: 46
38170811 TATGTGTGCT
* * *
38170821 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGAGAGCC
* * * * * *
38170867 AGTGTAAGACCATGTCTTGGACATGGCATCGACATTGA-GACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCATGATGAGAGCC
*
38170915 AGTGTAAGACATGTCTGGGACATTCATCGGCCTCGA-GATG-GAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ATGATGAG-AGCC
* * *
38170961 AGTGTAAGACATGTCTGGAACATGCATCGG-CTACATGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CATGATGAGAGCC
38171005 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
38171030 GCATTGGCAC
Statistics
Matches: 134, Mismatches: 21, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
44 11 0.08
45 20 0.15
46 54 0.40
47 26 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGAGAGCC
Found at i:38172785 original size:27 final size:27
Alignment explanation
Indices: 38172755--38172932 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
38172745 ATATTGAGTC
* *
38172755 CGCACACTCAGTGCTATATAACCAACT
1 CGCACACTTAGTGCTACATAACCAACT
* * *
38172782 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAACCAACT
* *
38172809 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-ACCAACT
** *** *
38172837 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAACCAACT
** **
38172864 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAACCAACT
* ** *
38172891 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAACCAACT
*
38172918 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
38172933 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 101 0.83
28 21 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAACCAACT
Found at i:38172894 original size:82 final size:81
Alignment explanation
Indices: 38172781--38172931 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
38172771 TATAACCAAC
* *
38172781 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
38172846 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
38172863 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGTACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
38172927 AGTGC
65 AGTGC
38172932 TGTACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.76
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:38180884 original size:27 final size:27
Alignment explanation
Indices: 38180854--38181031 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
38180844 ATATTGAGTC
* * * *
38180854 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
38180881 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38180908 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
38180936 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
38180963 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
38180990 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
38181017 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
38181032 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:38180993 original size:82 final size:81
Alignment explanation
Indices: 38180875--38181030 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
38180865 TGCTATATAA
* *
38180875 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
38180940 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
38180957 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
38181021 CACTTAGTGC
65 CACTTAGTGC
38181031 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:38181527 original size:12 final size:12
Alignment explanation
Indices: 38181510--38181535 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38181500 ATGGCATACT
38181510 TATGTATATATA
1 TATGTATATATA
38181522 TATGTATATATA
1 TATGTATATATA
38181534 TA
1 TA
38181536 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:38183385 original size:19 final size:19
Alignment explanation
Indices: 38183361--38183398 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
38183351 ACTTGCATAA
* *
38183361 TGTTTACTGTTACTGCAAT
1 TGTTTACTATTACTACAAT
38183380 TGTTTACTATTACTACAAT
1 TGTTTACTATTACTACAAT
38183399 GGGGGCAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (19 bp):
TGTTTACTATTACTACAAT
Found at i:38186972 original size:38 final size:38
Alignment explanation
Indices: 38186922--38186998 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
38186912 GATGATTAAC
38186922 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
1 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
38186960 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
1 ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
38186998 A
1 A
38186999 ACCTAAGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (38 bp):
ATATATTAGACTAAATGCAATGATCCTTAATGCAAATT
Done.