Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 122 of 320
Found at i:39838260 original size:87 final size:89
Alignment explanation
Indices: 39838161--39838321 Score: 229
Period size: 89 Copynumber: 1.8 Consensus size: 89
39838151 CAATACAGAG
* * * * *
39838161 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAATCA-CCTGAAGGCCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGACCTGCTTCGATGGGAAAACATCC-AAAGGCCAGATCTGCTATGTCTT
*
39838223 CGATTTGCTCCTTGTAAACACAAGA
65 CGATCTGCTCCTTGTAAACACAAGA
*
39838248 ATGCCAAATCATCTTGGACCTGCTTCGATGGGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCGATGGGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
39838313 GATCTGCTC
66 GATCTGCTC
39838322 TCCGTCAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 25 0.39
88 1 0.02
89 36 0.56
90 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGACCTGCTTCGATGGGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:39838366 original size:44 final size:43
Alignment explanation
Indices: 39838308--39838390 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
39838298 ATCTGCTATG
* * * *
39838308 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCGCTCTCCGAC-AATATAGAGATGCCAAATCTGTT
*
39838352 TCTTCAATCCGCTCTCTGACAATATAGAGATGCCAAATC
1 TCTTCAATCCGCTCTCCGACAATATAGAGATGCCAAATC
39838391 ATCTTAGATC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 18 0.53
44 16 0.47
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (43 bp):
TCTTCAATCCGCTCTCCGACAATATAGAGATGCCAAATCTGTT
Found at i:39838460 original size:220 final size:220
Alignment explanation
Indices: 39838076--39840106 Score: 3112
Period size: 220 Copynumber: 9.2 Consensus size: 220
39838066 GGGTGTTACA
* *
39838076 AGATCTGCTATATCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* *
39838141 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAATCACCTGAAGGC
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
*
39838206 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
*
39838271 TTCGATGGGAAAACATCCAAAGGTC
196 TTCGATGTGAAAACATCCAAAGGTC
* * *
39838296 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATC
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* * * * *
39838361 CGCTCTCTGACAATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAGGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * * *
39838426 CAAATCTGCTATGTCTTCGATTTTCTCATTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* * *
39838491 CTCGATGTGAAAACGTCCAAAGGCC
196 TTCGATGTGAAAACATCCAAAGGTC
* * ** *
39838516 AGATCTGCTATGTCTTCGATCTGCTCTGCATTTAATATGGAGATGCCAAATCTATTTCTTCGATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
*
39838581 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAACGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * * * *
39838646 CAGATCTGCTATGTCTTCAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGATCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* *
39838711 TTCAATGTGAAAACATCTAAAGGTC
196 TTCGATGTGAAAACATCCAAAGGTC
* * * *
39838736 AGATCTGCTATGACTTCGATCTGCTCTCCATCGAATATCGAGATGCCAAATCTGTTTCTTCAATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* *
39838801 TGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAACTGAAGGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * * * * *
39838866 CAGATCTACTACGTCTTCGATTTACTACTTGTAAACACAAGAATACCAAATCATCTTGGATCTAC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
*
39838931 TTCGATGTGAAAACATCCAAAGGTT
196 TTCGATGTGAAAACATCCAAAGGTC
* *
39838956 AGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
39839021 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAA-GT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * *
39839085 CCAGATATGCTATGTCTTCGATTTGCTCCTTGTAAACCCAAGAATGCCAAATCATCTTGGACCTG
131 -CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTG
39839150 CTTCGATGTGAAAACATCCAAAGGTC
195 CTTCGATGTGAAAACATCCAAAGGTC
* * *
39839176 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATC
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* * ** *
39839241 CGCTCTCTGACAATACAGAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACACCTGAAGGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* *
39839306 CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
39839371 TTCGATGTGAAAACATCCAAAGGTC
196 TTCGATGTGAAAACATCCAAAGGTC
* * * * *
39839396 AGATCTGCTATGTCTTCAATCTTCTCTCCATTGAATATGGAGATGCCAAATCTGTTTCTTTGATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* *
39839461 TGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * * *
39839526 CAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGT
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* * * *
39839591 TTCGTTATGCAAACATCCAAAGGTT
196 TTCGATGTGAAAACATCCAAAGGTC
* * *
39839616 AGATCTGCTATGCCTTCGATCTCCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATT
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* * *
39839681 TTTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAATCACCTGAAGGC
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
*
39839746 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
39839811 TTCGATGTGAAAACATCCAAAGGTC
196 TTCGATGTGAAAACATCCAAAGGTC
* * * *
39839836 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATG-CAAATCTATTTCTTCAATC
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
* * * * *
39839900 CGCTCTCTGACAATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAGGT
66 TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
* * * * *
39839965 CAAATCTGCTATGTCTTCGATTTTCTCATTGTAAACACAAGAATGCTAAATCATCTTAGATCTGC
131 CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
*
39840030 TTCGATGTGAAAACGTCCAAAGGTC
196 TTCGATGTGAAAACATCCAAAGGTC
* * **
39840055 AGATCTGCTATGTCTTCGATCTGCTCTGCATTTAATATGGAGATGCCAAATC
1 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
39840107 ATCTTGGATC
Statistics
Matches: 1637, Mismatches: 171, Indels: 6
0.90 0.09 0.00
Matches are distributed among these distances:
219 198 0.12
220 1437 0.88
221 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
AGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATT
TGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT
CAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
TTCGATGTGAAAACATCCAAAGGTC
Found at i:39839201 original size:89 final size:87
Alignment explanation
Indices: 39839041--39839201 Score: 227
Period size: 89 Copynumber: 1.8 Consensus size: 87
39839031 CAATACAGAG
* * *
39839041 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATATGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGACCTGCTTCAGTGAAAACACCTAAAGTCCAGATATGCTATGTCTTCGA
*
39839106 TTTGCTCCTTGTAAACCCAAGA
66 TCTGCTCCTTGTAAACCCAAGA
*
39839128 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGT-CAGATCTGCTATGTCT
1 ATGCCAAATCATCTTGGACCTGCTTC-A-GTGAAAACA-CCTAAA-GTCCAGATATGCTATGTCT
39839191 TCGATCTGCTC
62 TCGATCTGCTC
39839202 TCCGTCAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 35 0.54
90 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGACCTGCTTCAGTGAAAACACCTAAAGTCCAGATATGCTATGTCTTCGA
TCTGCTCCTTGTAAACCCAAGA
Found at i:39839246 original size:44 final size:43
Alignment explanation
Indices: 39839188--39839270 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
39839178 ATCTGCTATG
* * * **
39839188 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCGCTCTCCGAC-AATACAGAGATGCCAAATCTGTT
*
39839232 TCTTCAATCCGCTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATC
39839271 ATCTTATATC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:39839804 original size:87 final size:89
Alignment explanation
Indices: 39839701--39839861 Score: 238
Period size: 89 Copynumber: 1.8 Consensus size: 89
39839691 CAATACAGAG
* * * *
39839701 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAATCA-CCTGAAGGCCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGCCAGATCTGCTATGTCTT
*
39839763 CGATTTGCTCCTTGTAAACACAAGA
65 CGATCTGCTCCTTGTAAACACAAGA
*
39839788 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
39839853 GATCTGCTC
66 GATCTGCTC
39839862 TCCGTCAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 37 0.57
90 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:39840074 original size:89 final size:87
Alignment explanation
Indices: 39839920--39840251 Score: 341
Period size: 89 Copynumber: 3.8 Consensus size: 87
39839910 CAATATAGAG
* * * *
39839920 ATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
39839985 TTTTCTCATTGTAAACACAAGA
66 TTTTCTCATTGTAAACACAAGA
* *
39840007 ATGCTAAATCATCTTAGATCTGCTTCGATGTGAAAACGTCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTAGATCTGCTTC-A-GTGAAAAC-ACCTAAAGGTCAGATCTGCTATGTCTT
* * **
39840071 CGATCTGCTCTGCATT-T-AATA-TGGA
63 CGAT-T-TTCT-CATTGTAAACACAAGA
* * * * *
39840096 GATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAACGTCAGATCTGCTATGTCTTCA
1 -ATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCG
* * *
39840161 ATTTACTCCTCGTAAACACAAGA
65 ATTTTCTCATTGTAAACACAAGA
* ** *
39840184 ATTCTGAATCATCTTGGATCTGCTTCAATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTAGATCTGCTTC-A-GTGAAAACA-CCTAAAGGTCAGATCTGCTATGTCTT
39840248 CGAT
63 CGAT
39840252 CTGCTCTCCA
Statistics
Matches: 200, Mismatches: 31, Indels: 26
0.78 0.12 0.10
Matches are distributed among these distances:
85 2 0.01
86 3 0.01
87 53 0.26
88 35 0.17
89 67 0.34
90 32 0.16
91 4 0.02
92 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATCTTAGATCTGCTTCAGTGAAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
TTTTCTCATTGTAAACACAAGA
Found at i:39840124 original size:177 final size:177
Alignment explanation
Indices: 39839911--39840283 Score: 584
Period size: 177 Copynumber: 2.1 Consensus size: 177
39839901 GCTCTCTGAC
*
39839911 AATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTA
1 AATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAACGTCAAATCTGCTA
* * * *
39839976 TGTCTTCGATTTTCTCATTGTAAACACAAGAATGCTAAATCATCTTAGATCTGCTTCGATGTGAA
66 TGTCTTCAATTTACTCATCGTAAACACAAGAATGCTAAATCATCTTAGATCTGCTTCAATGTGAA
* * **
39840041 AACGTCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTGCATTT
131 AACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCG
* * * *
39840088 AATATGGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAACGTCAGATCTGCTA
1 AATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAACGTCAAATCTGCTA
* * * *
39840153 TGTCTTCAATTTACTCCTCGTAAACACAAGAATTCTGAATCATCTTGGATCTGCTTCAATGTGAA
66 TGTCTTCAATTTACTCATCGTAAACACAAGAATGCTAAATCATCTTAGATCTGCTTCAATGTGAA
39840218 AACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCG
131 AACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCG
*
39840265 AATATCGAGATGCCAAATC
1 AATATAGAGATGCCAAATC
39840284 TGTTTCTTCG
Statistics
Matches: 178, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
177 178 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (177 bp):
AATATAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAACGTCAAATCTGCTA
TGTCTTCAATTTACTCATCGTAAACACAAGAATGCTAAATCATCTTAGATCTGCTTCAATGTGAA
AACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCG
Found at i:39840417 original size:87 final size:89
Alignment explanation
Indices: 39840317--39840477 Score: 245
Period size: 89 Copynumber: 1.8 Consensus size: 89
39840307 CAATACAGAG
* * **
39840317 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACAACTGAAGGTCAGATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTACTATGTCTTC
*
39840380 GATTTACTCCTTGTAAACACAAGA
66 GATCTACTCCTTGTAAACACAAGA
* *
39840404 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTACTATGTCTTC
39840469 GATCTACTC
66 GATCTACTC
39840478 TCCGTCGAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 39 0.60
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAGATCTACTATGTCTTC
GATCTACTCCTTGTAAACACAAGA
Found at i:39840488 original size:220 final size:220
Alignment explanation
Indices: 39840094--39845463 Score: 3259
Period size: 220 Copynumber: 24.3 Consensus size: 220
39840084 ATTTAATATG
*
39840094 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAACGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * * * ** *
39840159 CAATTTACTCCTCGTAAACACAAGAATTCTGAATCATCTTGGATCTGCTTCAATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* *
39840224 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATCGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39840289 CTTCGATTTGTTCTTTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
* *
39840314 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAACTGAAGGTCAGATCTACTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
39840379 CGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
*
39840444 CAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39840509 CTTTGATTTGTTCTCTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
*
39840534 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAA-GTCCAAATCTGCTATGTCT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT-CAGATCTGCTATGTCT
* *
39840598 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACTT
65 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACAT
*
39840663 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
130 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
* ** * *
39840728 TCTTCAATCCGCTCTCGGACAATACA
195 TCTTCGATTTGTTCTCTGACAATACA
* ** * * *
39840754 GAGAAGCCAAATCATCTTATATCCGCTTCAGTGTAAACACCTGATGGTCAAATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39840819 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* * *
39840884 CAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
39840949 CTTCGATTTGTTCT-TGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
*
39840973 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * * * * * *
39841038 CAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTTTCGTTATGGAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* *
39841103 CAAAGGTTAGATCTGCTATGCCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* * *
39841168 CTTTGATTTTTTCTCTAACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
* *
39841193 GAGATGCCAAATCATCTTGGATCTGTTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * * ** * ** * * *
39841258 CGATCTGTTCTCC--GTCGAATA-TGGAGATGCCAAATCTATTTATTCAATTTGTTCTCAGATAT
66 CGAT-T-TGCTCCTTGT-AAACACAAGA-ATGCCAAATC-A--TCTTGGATCTGCT-TC-GATGT
* * * * ** * *
39841320 GTAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGACT
122 G-AAAA-CATC-CA-A--AG-GTCA--G--ATCTGCT--A--T--G-TCTTCGA--TC-T-G-C-
* *** * * * *
39841385 TGCTCC-TTGTAA-ACACAAGAATG-CAAATC---ATCTTGGATCTGCTTCGATGTGA-AA-ACA
163 T-CTCCGTCG-AATA-TGGAG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * * * * * * * * * *
39841442 TCCAAAGGTCATATCTGCTATGTCTTCGATCTACTCTCCGTCG--AATA--TGGAGATGCCAAAT
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGT-GTAAACACCT-GA-AGGTCAGAT
* *
39841503 CTG-T-T-TCTTCGATTTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTT
54 CTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTT
* * * * * * * **
39841562 C-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTCGATTTACTC-CTTGT-AAACA-CA
116 CGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATGG
* * * * *
39841621 AGAACGCCAAATC---ATCTTGGATCTGCTTCGATGTGA-AA-ACA
179 AG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * * * * * * * ** * * *
39841662 TCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT-TGAATA-AGGAGATGCCAAATCT
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGTGTAAACACCTGA-AGGTCAGATCT
* * *
39841725 G-T-T-TCTTTGATTTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTTC-
56 GCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTTCG
* * * * * * * * **
39841783 A-GTGCAAACA-CCTGAAGGCCAGATCTACTATGTCTTCGATTTGCTC-CTTGT-AAACA-CAAG
118 ATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATGGAG
* * ** *
39841843 AATGCCAAA--T-TATCTTGGACCTGCTTCGATGTGA-AA-ACA
181 -ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * * * * * * * * *
39841882 TCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCA-T-CAAATA--TGGAGATGCCAAAT
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-T-CAGTGTAAACACCT-GA-AGGTCAGAT
* ** * * * * *
39841943 CTG-T-T-TCTTCAATCCGCT-CTCTG-ACAATA-TAGAGATGCCAAATCATCTTAGTTCCGCTT
54 CTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTT
* * * * * * * **
39842002 C-A-GTGTAAACA-CCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTC-CTTGT-AAACA-CA
116 CGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATGG
* * * * * *
39842061 AGAATGCCAAATC---ATCTTAGATCTGCTTCGATGTGAAAACGTCCA
179 AG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAA--TACA
* * * * * * * * *
39842106 -A-AGGTCAGATCTGCTATGTCTTCGATCTGCTCTGCA-T-TTAATA--TGGAGATGCCA-A-AT
1 GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-T-CAGTGTAAACACCT-GA-AGGTCAGATCT
* * * *
39842163 -CTATTTCTTCAATTTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTTC-
56 GCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTTCG
* * * * * * ***
39842223 A-GTGTAAACA-CCTGAACGTCAAATCTGCTATGTCTTCCAT-T-TTCTCC-TCGTAA-ACACAA
118 ATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCG-AATA-TGGA
* * * * * *
39842282 GAATTCTAAATC---ATCTTGGATCTGCTTCAATGTGA-AA-ACA
180 G-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * * * * * * * * *
39842322 TCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCA-TCG--AATATC-GAGATGCCAAAT
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-T-CAGT-GTAAACACCTGA-AGGTCAGAT
* * * *
39842383 CTG-T-T-TCTTTGATTTGTTCTTTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTTC
54 CTGCTATGTCTTCGATTTGCTCCTTGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTTC
* * ** * * * * * * * **
39842443 -A-GTGTAAACAACTGAAGGTCAAATCTACTATGTCTTCGATTTACTC-CTTGT-AAACA-CAAG
117 GATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATGGAG
* * ** *
39842503 AATGCCAAATC---ATCTTGGATCTACTTCGATGTGA-AA-ACA
181 -ATGCCAAATCTGTTTCTTCGAT-TTGTTC--TCTGACAATACA
* * * * * * * * * * * *
39842542 TCCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCG--AATA--TGGAGATGCCAAAT
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGT-GTAAACACCT-GA-AGGTCAGAT
* * *
39842603 CTG-T-T-TCTTTGATTTG-TTCTCTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTT
54 CTGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTT
* * * * * * *
39842662 C-A-GTGTAAACA-CCTGAA-GTCCAGATCTGCTATGTCTTCGATTTGCTC-CTTGT-AAACA-C
116 CGATGTGAAAACATCC-AAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATG
* * * ** *
39842720 AAGAATGCCAAATC---ATCTTGGACCTGCTTCGATGTGA-AA-ACA
178 GAG-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * * * * * * * * * *
39842762 TCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGT-CAAATA--TGGAGATGCCAAATC
1 --GAGATGCCA-A-AT-C-A--TCTTGGATCTGCT-TCAGTGTAAACACCT-GA-AGGTCAGATC
* ** * * ** *
39842824 TG-T-T-TCTTCAATCCGCT-C-TCT-AACAATACAGAGATGCCAAATCATCTTATATCCGCTTC
55 TGCTATGTCTTCGATTTGCTCCTTGTAAAC-ACA-AGA-ATGCCAAATCATCTTGGATCTGCTTC
* * * * * * * **
39842883 -A-GTGTAAACA-CCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTC-CTTGT-AAACA-CAA
117 GATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTC-CGTCGAATATGGA
* * * * *
39842942 GAATGTCAAATC---ATCTTAGATCTGCTTCGATGTGA-AA-ACA
180 G-ATGCCAAATCTGTTTCTTCGATTTG-TTC--TCTGACAATACA
* * * ** * * * * *
39842982 TCCA-ATGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCA-T-TGAATA--TGGAGATGCCAAA
1 --GAGAT-GCCA-A-AT-C-A--TCTTGGATCTGCT-T-CAGTGTAAACACCT-GA-AGGTCAGA
* * *
39843042 TCTG-T-T-TCTTCGATTTGTTCTTTG-ACAATAC-AGAGATGCCAAATCATCTTGGATCTGCTT
53 TCTGCTATGTCTTCGATTTGCTCCTTGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTT
* * * * *
39843102 C-A-GTGTAAAA-A-CCTGAAGGTCAGATCTGCTATGTCTTCAATTTGC-C-CC-TTGTAA-ACA
116 CGATGTG-AAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCG-AATA-T
** * * *
39843159 CAAGAATGCCAAATC---ATCTT-GAATCTG-TCTCGTTATACAA-ACA
177 GGAG-ATGCCAAATCTGTTTCTTCG-ATTTGTTCTC--T-GACAATACA
* * * ** * * * * * * * *
39843202 TCCAAAAGTTAGATCTGCTATGCCTTCGATCTGCTCTCCGT-TGAATA--TGGAGATGCCAAATC
1 --GAGATGCCA-A-AT-C-AT--CTTGGATCTGCT-TCAGTGTAAACACCT-GA-AGGTCAGATC
* * * * * *
39843264 TG-T-T-TCTTCGATTT-TTTCTCTG-ACAATA-GAGAGATGCCAAATCAACTTGGATCTGTTTC
55 TGCTATGTCTTCGATTTGCTCCT-TGTA-AACACAAGA-ATGCCAAATCATCTTGGATCTGCTTC
* * * **
39843323 -A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTTGATCTATTCTCCGTCGAATATGGAG
117 GATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAG
* * * * *
39843385 ATTCCAAATCTATTTATTCAATTTGTTCTC--A-GAT--A
181 ATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * *
39843420 -TG-T-AC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39843481 CGACTTGCTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* *
39843545 CAAAGGTCATATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* **
39843610 CTTCAATCCAG-TCTCTGACAATACA
196 CTTCGAT-TTGTTCTCTGACAATACA
*
39843635 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTTAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
39843700 CGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* *
39843765 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAATAAGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39843830 CTTTGATTTGTTCTCTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
* * * *
39843855 GATATACCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGCCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
** *
39843920 CGATTTGCTCCTTGTAAACACAAGAATGGAAAATCATCTTGGACCTGCTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
*
39843985 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* ** * * *
39844050 CTTCAATCCGCTCTCTGACAAAATA
196 CTTCGATTTGTTCTCTGACAATACA
* * * * * * *
39844075 GAGATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAGCACCTAAAGGTGAAATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
39844140 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACGTC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* * ** * *
39844205 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTGCATTTAATGTGGAGATGCCAAATCTATTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
39844270 CTTCGATTTGTTCTCTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
*
39844295 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAACGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * * * * *
39844360 CAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGATCTGCTTCAATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* *
39844425 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCATCGAATATCGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39844490 CTTCGATTTGTTCTTTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
* * *
39844515 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACAACTGAAGGTCAAATCTACTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
39844580 CGATTTACTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
*
39844645 CAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39844710 CTTTGATTTGTTCTCTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
* *
39844735 GAGATGTCAAATCATCTTTGATCTGCTTCAGTGTAAACACCTGAA-GTCCAGATCTGCTATGTCT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGT-CAGATCTGCTATGTCT
*
39844799 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACAT
65 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACAT
*
39844864 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
130 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
* ** *
39844929 TCTTCAATCCGCTCTCTGACAATACA
195 TCTTCGATTTGTTCTCTGACAATACA
** * * *
39844955 GAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACTCCTGAAGGTCAAATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* *
39845020 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* * * *
39845085 CAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAATATAGAGATGCCAAATCTGTTT
131 CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
*
39845150 CTTCGATTTGTTCTTTGACAATACA
196 CTTCGATTTGTTCTCTGACAATACA
*
39845175 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * * * * * *
39845240 CAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTTTCGTTATGCAAACATC
66 CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
* * *
39845305 CAAAGGTTAGATCTGCTAT-TCCTTCGATCTGCTCTCCGTCGAATATGGAGATCCCAATTCTGTT
131 CAAAGGTCAGATCTGCTATGT-CTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
* *
39845369 TCCTCGATTTTTTCTCTGACAATACA
195 TCTTCGATTTGTTCTCTGACAATACA
*
39845395 GAGATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
1 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
39845460 CGAT
66 CGAT
39845464 CTATTCTCCG
Statistics
Matches: 4483, Mismatches: 483, Indels: 368
0.84 0.09 0.07
Matches are distributed among these distances:
205 4 0.00
206 24 0.01
207 2 0.00
208 24 0.01
209 19 0.00
210 84 0.02
211 4 0.00
212 1 0.00
213 2 0.00
215 1 0.00
216 4 0.00
217 5 0.00
218 14 0.00
219 317 0.07
220 3690 0.82
221 52 0.01
222 20 0.00
223 7 0.00
224 19 0.00
225 7 0.00
226 6 0.00
227 3 0.00
228 9 0.00
229 2 0.00
230 1 0.00
231 1 0.00
232 1 0.00
233 3 0.00
235 5 0.00
237 5 0.00
239 4 0.00
240 1 0.00
241 1 0.00
242 1 0.00
243 2 0.00
244 6 0.00
245 3 0.00
246 4 0.00
247 2 0.00
248 9 0.00
249 9 0.00
250 14 0.00
251 24 0.01
252 6 0.00
253 19 0.00
254 10 0.00
255 3 0.00
256 3 0.00
257 22 0.00
258 4 0.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
CGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
CAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
CTTCGATTTGTTCTCTGACAATACA
Found at i:39840635 original size:87 final size:89
Alignment explanation
Indices: 39840537--39840697 Score: 222
Period size: 89 Copynumber: 1.8 Consensus size: 89
39840527 CAATACAGAG
* * *
39840537 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAAC-ACCTGAA-GTCCAAATCTGCTATGTCT
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACTACC-AAAGGT-CAAATCTGCTATGTCT
*
39840598 TCGATTTGCTCCTTGTAAACACAAGA
64 TCGATCTGCTCCTTGTAAACACAAGA
* *
39840624 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACTTCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACTACCAAAGGTCAAATCTGCTATGTCTTC
39840689 GATCTGCTC
66 GATCTGCTC
39840698 TCCGTCAAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
87 25 0.39
88 1 0.02
89 34 0.53
90 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACTACCAAAGGTCAAATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:39840869 original size:87 final size:88
Alignment explanation
Indices: 39840755--39840917 Score: 215
Period size: 89 Copynumber: 1.9 Consensus size: 88
39840745 GACAATACAG
* * * *
39840755 AGAAGCCAAATCATCTTATATCCGCTTC-A-GTGTAAACA-CCTGATGGTCAAATCTGCTATGTC
1 AGAAGCCAAATCATCTTAGATCCGCTTCGATGTGAAAACATCC-AAAGGTCAAATCTGCTATGTC
* *
39840817 TTCGATTTGCTCCTTGTAAACACA
65 TTCAATCTGCTCCTTGTAAACACA
* *
39840841 AGAATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTC
1 AGAA-GCCAAATCATCTTAGATCCGCTTCGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTC
39840906 TTCAATCTGCTC
65 TTCAATCTGCTC
39840918 TCCATTGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 4 0.06
87 22 0.34
88 1 0.02
89 36 0.55
90 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (88 bp):
AGAAGCCAAATCATCTTAGATCCGCTTCGATGTGAAAACATCCAAAGGTCAAATCTGCTATGTCT
TCAATCTGCTCCTTGTAAACACA
Found at i:39841259 original size:131 final size:122
Alignment explanation
Indices: 39841063--39841382 Score: 365
Period size: 131 Copynumber: 2.5 Consensus size: 122
39841053 AAACACAAGA
* * *
39841063 ATGCCAAATCATCTTGAATCTGTTTC-GTTATGGAAACATCC-AAAGGTTAGATCTGCTATGCCT
1 ATGCCAAATCATCTTGGATCTGTTTCAG-TAT--AAACA-CCTAAAGGTCAGATCTGCTATGTCT
* * * *
39841126 TCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTTTTCTCTAACAATA
62 TCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTT-ATTCA--ATTTCT-T--C--T-
39841191 CAGAG
118 CAGAG
*
39841196 ATGCCAAATCATCTTGGATCTGTTTCAGTATAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGTTTCAGTATAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
* * *
39841261 TCTGTTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTCAGAT
66 TCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTCTTCTCAGAG
** * * *
39841318 ATGTAAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGTTTCAGTATAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
39841383 CTTGCTCCTT
Statistics
Matches: 168, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
122 63 0.38
123 1 0.01
125 1 0.01
127 1 0.01
128 4 0.02
130 5 0.03
131 64 0.38
133 28 0.17
134 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (122 bp):
ATGCCAAATCATCTTGGATCTGTTTCAGTATAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
TCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTCTTCTCAGAG
Found at i:39841917 original size:89 final size:87
Alignment explanation
Indices: 39841757--39841917 Score: 225
Period size: 89 Copynumber: 1.8 Consensus size: 87
39841747 CAATACAGAG
* * *
39841757 ATGCCAAATCATCTTGGATCTGCTTCAGTGCAAACACCTGAAGGCCAGATCTACTATGTCTTCGA
1 ATGCCAAATCATCTTGGACCTGCTTCAGTGAAAACACCTAAAGGCCAGATCTACTATGTCTTCGA
*
39841822 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
39841844 ATGCCAAATTATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGACCTGCTTC-A-GTGAAAACA-CCTAAAGGCCAGATCTACTATGTCTT
39841908 CGATCTGCTC
63 CGATCTGCTC
39841918 TCCATCAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 37 0.58
90 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (87 bp):
ATGCCAAATCATCTTGGACCTGCTTCAGTGAAAACACCTAAAGGCCAGATCTACTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:39842128 original size:89 final size:87
Alignment explanation
Indices: 39841977--39842137 Score: 225
Period size: 89 Copynumber: 1.8 Consensus size: 87
39841967 CAATATAGAG
* * *
39841977 ATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
*
39842042 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
39842064 ATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACGTCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTAGATCCGCTTC-A-GTGAAAAC-ACCTAAAGGTCAAATCTGCTATGTCTT
39842128 CGATCTGCTC
63 CGATCTGCTC
39842138 TGCATTTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 37 0.58
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (87 bp):
ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:39842515 original size:87 final size:89
Alignment explanation
Indices: 39842417--39842577 Score: 236
Period size: 89 Copynumber: 1.8 Consensus size: 89
39842407 CAATACAGAG
* * **
39842417 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACAACTGAAGGTCAAATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
*
39842480 GATTTACTCCTTGTAAACACAAGA
66 GATCTACTCCTTGTAAACACAAGA
* * *
39842504 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
39842569 GATCTACTC
66 GATCTACTC
39842578 TCCGTCGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 25 0.39
88 1 0.02
89 38 0.59
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
GATCTACTCCTTGTAAACACAAGA
Found at i:39842739 original size:87 final size:89
Alignment explanation
Indices: 39842637--39842797 Score: 240
Period size: 89 Copynumber: 1.8 Consensus size: 89
39842627 CAATACAGAG
* * *
39842637 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTGAA-GTCCAGATCTGCTATGTCT
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGT-CAGATCTGCTATGTCT
*
39842698 TCGATTTGCTCCTTGTAAACACAAGA
64 TCGATCTGCTCCTTGTAAACACAAGA
39842724 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
39842789 GATCTGCTC
66 GATCTGCTC
39842798 TCCGTCAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 36 0.55
90 4 0.06
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:39843633 original size:781 final size:789
Alignment explanation
Indices: 39842504--39844143 Score: 2480
Period size: 781 Copynumber: 2.1 Consensus size: 789
39842494 AAACACAAGA
* *
39842504 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTAAAGGTCAGATCTGCTATGTCTT
* * **
39842568 CGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATAC
63 CGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTC-GACAATA-
* * *
39842633 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATCTGCTATGTCT
126 AGAGATGACAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGTCCAGATCTGCTATGTCT
*
39842698 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACAT
191 TCGACTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACAT
*
39842763 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
256 CCAAAGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTT
*
39842828 TCTTCAATCCGCTCTCTAACAATACAGAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACA
321 TCTTCAATCCGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACA
* * * *
39842893 CCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGTCAAATCATCT
386 CCTGAAGGTCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCT
*
39842958 TAGATCTGCTTCGATGTGAAAACATCCAATGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCAT
451 TAGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCAT
* * *
39843023 TGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCA
516 TGAATAAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCA
*
39843088 TCTTGGATCTGCTTCAGTGTAAAA-ACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCCCCTT
581 TCTTGGATCTGCTTCAGTG-AAAACACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTT
* * * *
39843152 GTAAACACAAGAATGCCAAATCATCTTGAATCTG-TCTCGTTAT-ACAAACATCCAAAAGTTAGA
645 GTAAACACAAGAATGCAAAATCATCTTGAACCTGCT-TCGATATGA-AAACATCCAAAAGTCAGA
** * ****
39843215 TCTGCTATGCCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTCTTCGATTTTT
708 TCTGCTATGCCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGC
*
39843280 TCTCTGACAATAGAGAG
773 TCTCTGACAAAAGAGAG
* * * *
39843297 ATGCCAAATCAACTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTTGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
* * * *
39843362 TCTATTCTCCGTCGAATATGGAGATTCCAAATCTATTTATTCAATTTGTTCTC-A-GAT-A-TG-
66 TCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTCGACAATAAGAGA
39843422 T-AC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGT-CAGATCTGCTATGTCTTCGA
131 TGACAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAA-GTCCAGATCTGCTATGTCTTCGA
*
39843484 CTTGCTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAA
195 CTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAA
* *
39843548 AGGTCATATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTT
260 AGGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTT
* * *
39843613 CAATCCAG-TCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCT
325 CAATCC-GCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCT
* * *
39843677 GAAGGTTAGATCTGCTATGTCTTCGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCTTGG
389 GAAGGTCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCTTAG
* *
39843742 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGA
454 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGA
* *
39843807 ATAAGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGATATACCAAATCATCT
519 ATAAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCT
* *
39843872 TGGATCTGCTTCAGTGAAAACACCTGAAGGCCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAA
584 TGGATCTGCTTCAGTGAAAACACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAA
* * * *
39843937 ACACAAGAATGGAAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCT
649 ACACAAGAATGCAAAATCATCTTGAACCTGCTTCGATATGAAAACATCCAAAAGTCAGATCTGCT
*
39844002 ATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTG
714 ATGCCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTG
*
39844067 ACAAAATAGAG
779 ACAAAAGAGAG
* * * * * *
39844078 ATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAGCACCTAAAGGTGAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
39844143 T
66 T
39844144 TTGCTCCTTG
Statistics
Matches: 769, Mismatches: 72, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
780 4 0.01
781 570 0.74
782 81 0.11
783 3 0.00
784 1 0.00
785 1 0.00
786 1 0.00
788 2 0.00
789 1 0.00
790 2 0.00
791 79 0.10
792 1 0.00
793 23 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (789 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTCGACAATAAGAGA
TGACAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGTCCAGATCTGCTATGTCTTCGAC
TTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAA
GGTCAGATCTGCTATGTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTC
AATCCGCTCTCTAACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGA
AGGTCAAATCTGCTATGTCTTCGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCTTAGAT
CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAAT
AAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATACCAAATCATCTTG
GATCTGCTTCAGTGAAAACACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAAC
ACAAGAATGCAAAATCATCTTGAACCTGCTTCGATATGAAAACATCCAAAAGTCAGATCTGCTAT
GCCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTGAC
AAAAGAGAG
Found at i:39843634 original size:561 final size:569
Alignment explanation
Indices: 39842724--39843923 Score: 1760
Period size: 561 Copynumber: 2.1 Consensus size: 569
39842714 AAACACAAGA
* *
39842724 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGAAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * *
39842788 CGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTAACAATAC
63 CGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCT-ACAATA-
* * *
39842853 AGAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCT
126 AGAGATGACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCT
*
39842918 TCGATTTGCTCCTTGTAAACACAAGAATGTCAAATCATCTTAGATCTGCTTCGATGTGAAAACAT
191 TCGACTTGCTCCTTGTAAACACAAGAATGTCAAATCATCTTAGATCTGCTTCGATGTGAAAACAT
* * *
39842983 CCAATGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAATATGGAGATGCCAAATCTGTT
256 CCAAAGGTCAGATCTGCTATGTCTTCAATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTT
* ** *
39843048 TCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAA
321 TCTTCAATCAGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAA
* * *
39843113 CCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCT
386 CCTGAAGGTCAGATCTGCTATGTCTTCAATCTACCCCTTGTAAACACAAGAACGCCAAATCATCT
* *
39843178 TGAATCTG-TCTCGTTAT-ACAAACATCCAAAAGTTAGATCTGCTATGCCTTCGATCTGCTCTCC
451 TGAATCTGCT-TCGATATGA-AAACATCCAAAAGTCAGATCTGCTATGCCTTCGATCTGCTCTCC
* * *
39843241 GTTGAATATGGAGATGCCAAATCTGTTTCTTCGATTTTTTCTCTGACAATAGAGAG
514 GTTGAATAAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
* * * *
39843297 ATGCCAAATCAACTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTTGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* * * ** *
39843362 TCTATTCTCCGTCGAATATGGAGATTCCAAATCTATTTATTCAATTTG-T-TCT-C----AGATA
66 TCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCTACAATAAGAGA
* *
39843420 TGTAC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
131 TG-ACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
*
39843484 CTTGCTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAA
195 CTTGCTCCTTGTAAACACAAGAATGTCAAATCATCTTAGATCTGCTTCGATGTGAAAACATCCAA
* * *
39843548 AGGTCATATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTT
260 AGGTCAGATCTGCTATGTCTTCAATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTTTCTT
*
39843613 CAATCCAG-TCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCT
325 CAAT-CAGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCT
* * * *
39843677 GAAGGTTAGATCTGCTATGTCTTCGATCTACTCCTTGTAAACACAAGAACGCCAAATCATCTTGG
389 GAAGGTCAGATCTGCTATGTCTTCAATCTACCCCTTGTAAACACAAGAACGCCAAATCATCTTGA
* * *
39843742 ATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGA
454 ATCTGCTTCGATATGAAAACATCCAAAAGTCAGATCTGCTATGCCTTCGATCTGCTCTCCGTTGA
* *
39843807 ATAAGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAT
519 ATAAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
* *
39843858 ATACCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGCCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
39843923 T
66 T
39843924 TTGCTCCTTG
Statistics
Matches: 566, Mismatches: 56, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
561 374 0.66
562 88 0.16
563 1 0.00
567 1 0.00
569 3 0.01
570 3 0.01
571 72 0.13
572 1 0.00
573 23 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (569 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCTACAATAAGAGA
TGACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCTTCGAC
TTGCTCCTTGTAAACACAAGAATGTCAAATCATCTTAGATCTGCTTCGATGTGAAAACATCCAAA
GGTCAGATCTGCTATGTCTTCAATCTACTCTCCATCGAATATGGAGATGCCAAATCTGTTTCTTC
AATCAGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGA
AGGTCAGATCTGCTATGTCTTCAATCTACCCCTTGTAAACACAAGAACGCCAAATCATCTTGAAT
CTGCTTCGATATGAAAACATCCAAAAGTCAGATCTGCTATGCCTTCGATCTGCTCTCCGTTGAAT
AAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAG
Found at i:39843640 original size:341 final size:342
Alignment explanation
Indices: 39843083--39843706 Score: 984
Period size: 341 Copynumber: 1.8 Consensus size: 342
39843073 AGAGATGCCA
* * *
39843083 AATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCC
1 AATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCTTCAACTTGCC
* *
39843148 CCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTCTCGTTATACAAACATCCAAAAGTTA
66 CCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTCTCGATATACAAACATCCAAAAGTCA
* * * **
39843213 GATCTGCTATGCCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
131 GATCTGCTATGCCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCC
** * *
39843278 TTTCTCTGACAATAGAGAGATGCCAAATCAACTTGGATCTGTTTCAGTGTAAACACCTGAAGGTC
196 AGTCTCTGACAATACAGAGATGCCAAATCAACTTGGATCTGCTTCAGTGTAAACACCTGAAGGTC
*
39843343 AGATCTGCTATGTCTTTGATCTATTCTCCGTCGAATATGGAGATTCCAAATCTATTTATTCAATT
261 AGATCTGCTATGTCTTCGATCTATTCTCCGTCGAATATGGAGATTCCAAATCTATTTATTCAATT
39843408 TGTTCTCAGATATGTAC
326 TGTTCTCAGATATGTAC
* * *
39843425 AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGACTTGCT
1 AATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCTTCAACTTGCC
* * *
39843490 CCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTG-CTTCGATGTGA-AAACATCCAAAGGT
66 CCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTC-TCGATAT-ACAAACATCCAAAAGT
* *
39843552 CATATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAAT
129 CAGATCTGCTATGCCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAAT
*
39843617 CCAGTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGG
194 CCAGTCTCTGACAATACAGAGATGCCAAATCAACTTGGATCTGCTTCAGTGTAAACACCTGAAGG
*
39843682 TTAGATCTGCTATGTCTTCGATCTA
259 TCAGATCTGCTATGTCTTCGATCTA
39843707 CTCCTTGTAA
Statistics
Matches: 255, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
340 1 0.00
341 175 0.69
342 79 0.31
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (342 bp):
AATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCTTCAACTTGCC
CCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTCTCGATATACAAACATCCAAAAGTCA
GATCTGCTATGCCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATCC
AGTCTCTGACAATACAGAGATGCCAAATCAACTTGGATCTGCTTCAGTGTAAACACCTGAAGGTC
AGATCTGCTATGTCTTCGATCTATTCTCCGTCGAATATGGAGATTCCAAATCTATTTATTCAATT
TGTTCTCAGATATGTAC
Found at i:39844085 original size:43 final size:44
Alignment explanation
Indices: 39844005--39844087 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
39843995 ATCTGCTATG
* * * *
39844005 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCGCTCTCCGACAAATATAGAGATGCCAAATCTGTT
*
39844049 TCTTCAATCCGCTCTCTGACAAA-ATAGAGATGCCAAATC
1 TCTTCAATCCGCTCTCCGACAAATATAGAGATGCCAAATC
39844088 ATCTTAGTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 15 0.44
44 19 0.56
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (44 bp):
TCTTCAATCCGCTCTCCGACAAATATAGAGATGCCAAATCTGTT
Found at i:39844230 original size:89 final size:87
Alignment explanation
Indices: 39844078--39844238 Score: 216
Period size: 89 Copynumber: 1.8 Consensus size: 87
39844068 CAAAATAGAG
* * * *
39844078 ATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAGCACCTAAAGGTGAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
*
39844143 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
39844165 ATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACGTCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTAGATCCGCTTC-A-GTGAAAAC-ACCTAAAGGTCAAATCTGCTATGTCTT
39844229 CGATCTGCTC
63 CGATCTGCTC
39844239 TGCATTTAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (87 bp):
ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:39844611 original size:87 final size:89
Alignment explanation
Indices: 39844518--39844678 Score: 236
Period size: 89 Copynumber: 1.8 Consensus size: 89
39844508 CAATACAGAG
* * **
39844518 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACAACTGAAGGTCAAATCTACTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
*
39844581 GATTTACTCCTTGTAAACACAAGA
66 GATCTACTCCTTGTAAACACAAGA
* * *
39844605 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
39844670 GATCTACTC
66 GATCTACTC
39844679 TCCGTCGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 25 0.39
88 1 0.02
89 38 0.59
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACAACCAAAGGTCAAATCTACTATGTCTTC
GATCTACTCCTTGTAAACACAAGA
Found at i:39844943 original size:44 final size:43
Alignment explanation
Indices: 39844885--39844967 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
39844875 ATCTGCTATG
* * * **
39844885 TCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
1 TCTTCAATCCGCTCTCCGAC-AATACAGAGATGCCAAATCTGTT
*
39844929 TCTTCAATCCGCTCTCTGACAATACAGAGATGCCAAATC
1 TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATC
39844968 ATCTTATATC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 17 0.52
44 16 0.48
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCAATCCGCTCTCCGACAATACAGAGATGCCAAATCTGTT
Found at i:39845107 original size:89 final size:87
Alignment explanation
Indices: 39844958--39845118 Score: 216
Period size: 89 Copynumber: 1.8 Consensus size: 87
39844948 CAATACAGAG
* * * * *
39844958 ATGCCAAATCATCTTATATCCGCTTCAGTGTAAACTCCTGAAGGTCAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCCACTTCAGTGAAAACTCCTAAAGGTCAAATCTGCTATGTCTTCAA
*
39845023 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* *
39845045 ATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTAGATCCACTTC-A-GTGAAAAC-TCCTAAAGGTCAAATCTGCTATGTCTT
39845109 CAATCTGCTC
63 CAATCTGCTC
39845119 TCCATTGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 23 0.37
88 1 0.02
89 36 0.57
90 3 0.05
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (87 bp):
ATGCCAAATCATCTTAGATCCACTTCAGTGAAAACTCCTAAAGGTCAAATCTGCTATGTCTTCAA
TCTGCTCCTTGTAAACACAAGA
Found at i:39845515 original size:131 final size:125
Alignment explanation
Indices: 39845265--39845584 Score: 337
Period size: 131 Copynumber: 2.5 Consensus size: 125
39845255 AAACACAAGA
* * *
39845265 ATGCCAAATCATCTTGAATCTGTTTC-GTTATGCAAACATCC-AAAGGTTAGATCTGCTAT-TCC
1 ATGCCAAATCATCTTGGATCTGTTTCAG---TGTAAACA-CCTAAAGGTCAGATCTGCTATGT-C
* * * * * *
39845327 TTCGATCTGCTCTCCGTCGAATATGGAGATCCCAATTCTGTTTCCTCGATTTTTTCTCTGACAAT
61 TTCGATCTACTCTCCGTCGAATATGGAGATCCCAAATCTATTTACTCAATTTGTTCTC--A-AAT
39845392 ACAGAG
123 --A-AG
*
39845398 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
* * * * *
39845463 TCTATTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTCAGATATG
66 TCTACTCTCCGTCGAATATGGAGATCCCAAATCTATTTACTCAATTTGTTCTCAAATAAG
* * *
39845523 -T-AC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
39845585 CTTGCTCCTT
Statistics
Matches: 165, Mismatches: 19, Indels: 17
0.82 0.09 0.08
Matches are distributed among these distances:
122 56 0.34
123 1 0.01
124 1 0.01
125 1 0.01
126 1 0.01
128 2 0.01
129 1 0.01
130 2 0.01
131 73 0.44
132 1 0.01
133 25 0.15
134 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (125 bp):
ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCGTCGAATATGGAGATCCCAAATCTATTTACTCAATTTGTTCTCAAATAAG
Found at i:39845745 original size:781 final size:787
Alignment explanation
Indices: 39844605--39846244 Score: 2503
Period size: 781 Copynumber: 2.1 Consensus size: 787
39844595 AAACACAAGA
* * *
39844605 ATGCCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * **
39844669 CGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATAC
63 CGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTG-T-TCT-AC-ATAC
* *
39844734 AGAGATGTCAAATCATCTTTGATCTGCTTCAGTGTAAACACCTGAAGTCCAGATCTGCTATGTCT
124 AGAGATGTCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGTCCAGATCTGCTATGTCT
* * *
39844799 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACAT
189 TCGACTTGCTCCTTGTAAACACAAGAATGCCAAATCATCGTGGACATGCTTCGATGTGAAAACAT
* *
39844864 CCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTT
254 CCAAAGGTCAGATCTGCTATCTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTT
* * *
39844929 TCTTCAATCCGCTCTCTGACAATACAGAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACT
319 TCTCCAATCCGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACA
* * *
39844994 CCTGAAGGTCAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCT
384 CCTGAAGGTCAAATCTGATATGTCTTCGATTTACTCCTTGTAAACACAAGAACGCCAAATCATCT
39845059 TAGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCAT
449 TAGATCTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCAT
*
39845124 TGAATATA-GAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATC
514 TGAATA-AGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATC
* *
39845188 ATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCCCCTT
578 ATCTTGGATCTGCTTCAGTGCAAAAACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTT
* * * * *
39845253 GTAAACACAAGAATGCCAAATCATCTTGAATCTGTTTCGTTATGCAAACATCCAAAGGTTAGATC
643 GTAAACACAAGAATGCCAAATCATCTTGAACCTGCTTCGATATGAAAACATCCAAAGGTCAGATC
* * * ****
39845318 TGCTAT-TCCTTCGATCTGCTCTCCGTCGAATATGGAGATC-CCAATTCTGTTTCCTCGATTTTT
708 TGCTATGT-CTTCGATCTGCTCTCCGTCAAATATGGAGA-CGCCAAATCTGTTTCCTCAATCCGC
39845381 TCTCTGACAATACAGAG
771 TCTCTGACAATACAGAG
*
39845398 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* *
39845463 TCTATTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTG-T-T-C-T-CAGATATG
66 TCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTACATACAGAGATG
39845523 T-ACAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGT-CAGATCTGCTATGTCTTCGAC
131 TCA-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAA-GTCCAGATCTGCTATGTCTTCGAC
*
39845586 TTGCTCCTTGTAAACACAAGAATG-CAAATCATCGTGGATATGCTTCGATGTGAAAACATCCAAA
194 TTGCTCCTTGTAAACACAAGAATGCCAAATCATCGTGGACATGCTTCGATGTGAAAACATCCAAA
* *
39845650 GGTCATATCTGCTATCTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTCC
259 GGTCAGATCTGCTATCTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTCC
* ** * * *
39845715 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGA
324 AATCCGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGA
* *
39845780 AGGTCAGATCTGATATGTCTTCGATTTACTCCTTGTAAACACAAGAACGCCAAATCATCTTGGAT
389 AGGTCAAATCTGATATGTCTTCGATTTACTCCTTGTAAACACAAGAACGCCAAATCATCTTAGAT
* * *
39845845 CTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAAT
454 CTACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAAT
*
39845910 AAGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
519 AAGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTG
* * *
39845975 GATCTGCTTCAGTGCAAACACCTGAAGGCCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAAAC
584 GATCTGCTTCAGTGCAAAAACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAAC
* *
39846040 ACAAGAATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTAT
649 ACAAGAATGCCAAATCATCTTGAACCTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTAT
*
39846105 GTCTTCGATCTGCTCTCCGTCAAATATGGAGACGCCAAATCTGTTTCTTCAATCCGCTCTCTGAC
714 GTCTTCGATCTGCTCTCCGTCAAATATGGAGACGCCAAATCTGTTTCCTCAATCCGCTCTCTGAC
* *
39846170 AATATATAG
779 AATACAGAG
* * * *
39846179 ATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
39846244 T
66 T
39846245 TTGCTCCTTG
Statistics
Matches: 775, Mismatches: 66, Indels: 24
0.90 0.08 0.03
Matches are distributed among these distances:
780 2 0.00
781 577 0.74
782 87 0.11
783 3 0.00
785 1 0.00
787 1 0.00
788 1 0.00
790 2 0.00
791 76 0.10
792 1 0.00
793 24 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (787 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTACATACAGAGATG
TCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGTCCAGATCTGCTATGTCTTCGACTT
GCTCCTTGTAAACACAAGAATGCCAAATCATCGTGGACATGCTTCGATGTGAAAACATCCAAAGG
TCAGATCTGCTATCTCTTCGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTCCAA
TCCGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATCCGCTTCAGTGTAAACACCTGAAG
GTCAAATCTGATATGTCTTCGATTTACTCCTTGTAAACACAAGAACGCCAAATCATCTTAGATCT
ACTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAATAA
GGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGA
TCTGCTTCAGTGCAAAAACCTGAAGGCCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAACAC
AAGAATGCCAAATCATCTTGAACCTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGT
CTTCGATCTGCTCTCCGTCAAATATGGAGACGCCAAATCTGTTTCCTCAATCCGCTCTCTGACAA
TACAGAG
Found at i:39845746 original size:561 final size:569
Alignment explanation
Indices: 39844825--39846024 Score: 1783
Period size: 561 Copynumber: 2.1 Consensus size: 569
39844815 AAACACAAGA
* *
39844825 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGAAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * *
39844889 CGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCGCTCTCTGACAATAC
63 CGATCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCT-ACAATA-
* * * *
39844954 AGAGATGCCAAATCATCTTATATCCGCTTCAGTGTAAACTCCTGAAGGTCAAATCTGCTATGTCT
126 AGAGATGACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCT
* * *
39845019 TCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACAT
191 TCGACTTGCTCCTTGTAAACACAAGAATGCCAAATCATCGTAGATATACTTCGATGTGAAAACAT
* * *
39845084 CCAAAGGTCAGATCTGCTATGTCTTCAATCTGCTCTCCATTGAATATAGAGATGCCAAATCTGTT
256 CCAAAGGTCAGATCTGCTATCTCTTCAATCTACTCTCCATCGAATATAGAGATGCCAAATCTGTT
* *
39845149 TCTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAA
321 TCTCCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAA
* * *
39845214 CCTGAAGGTCAGATCTGCTATGTCTTCAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCT
386 CCTGAAGGTCAGATCTGATATGTCTTCAATTTACCCCTTGTAAACACAAGAACGCCAAATCATCT
* * * *
39845279 TGAATCTGTTTCGTTATGCAAACATCCAAAGGTTAGATCTGCTAT-TCCTTCGATCTGCTCTCCG
451 TGAATCTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGT-CTTCGATCTGCTCTCCG
* * *
39845343 TCGAATATGGAGATCCCAATTCTGTTTCCTCGATTTTTTCTCTGACAATACAGAG
515 TCGAATAAGGAGATCCCAAATCTGTTTCCTCGATTTGTTCTCTGACAATACAGAG
* *
39845398 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* * ** *
39845463 TCTATTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTG-T-TCT-C----AGATA
66 TCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCTACAATAAGAGA
* *
39845521 TGTAC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGA
131 TG-ACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCTTCGA
* *
39845585 CTTGCTCCTTGTAAACACAAGAATG-CAAATCATCGTGGATATGCTTCGATGTGAAAACATCCAA
195 CTTGCTCCTTGTAAACACAAGAATGCCAAATCATCGTAGATATACTTCGATGTGAAAACATCCAA
* * * *
39845649 AGGTCATATCTGCTATCTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTC
260 AGGTCAGATCTGCTATCTCTTCAATCTACTCTCCATCGAATATAGAGATGCCAAATCTGTTTCTC
*
39845714 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTG
325 CGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTG
* * *
39845779 AAGGTCAGATCTGATATGTCTTCGATTTACTCCTTGTAAACACAAGAACGCCAAATCATCTTGGA
390 AAGGTCAGATCTGATATGTCTTCAATTTACCCCTTGTAAACACAAGAACGCCAAATCATCTTGAA
* *
39845844 TCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTTGAA
455 TCTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAA
* * *
39845909 TAAGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACAGAG
520 TAAGGAGATCCCAAATCTGTTTCCTCGATTTGTTCTCTGACAATACAGAG
* *
39845959 ATGCCAAATCATCTTGGATCTGCTTCAGTGCAAACACCTGAAGGCCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
39846024 T
66 T
39846025 TTGCTCCTTG
Statistics
Matches: 570, Mismatches: 54, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
561 378 0.66
562 85 0.15
563 1 0.00
567 1 0.00
569 3 0.01
570 3 0.01
571 74 0.13
572 1 0.00
573 24 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (569 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGAAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCGTCAAATATGGAGATGCCAAATCTATTTATTCAATCCGCTCTCTACAATAAGAGA
TGACAAATCATCTTAGATCCGCTTCAGTGTAAACACCTAAAGGTCAAATCTGCTATGTCTTCGAC
TTGCTCCTTGTAAACACAAGAATGCCAAATCATCGTAGATATACTTCGATGTGAAAACATCCAAA
GGTCAGATCTGCTATCTCTTCAATCTACTCTCCATCGAATATAGAGATGCCAAATCTGTTTCTCC
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGA
AGGTCAGATCTGATATGTCTTCAATTTACCCCTTGTAAACACAAGAACGCCAAATCATCTTGAAT
CTGCTTCGATATGAAAACATCCAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAAT
AAGGAGATCCCAAATCTGTTTCCTCGATTTGTTCTCTGACAATACAGAG
Found at i:39845747 original size:341 final size:348
Alignment explanation
Indices: 39845045--39845810 Score: 1041
Period size: 341 Copynumber: 2.2 Consensus size: 348
39845035 AAACACAAGA
* * * *
39845045 ATGCCAAATCATCTTAGATCTACTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
* * * * * *
39845109 CAATCTGCTCTCCATTGAATATAGAGATGCCAAATCTGTTTCTTCGATTTGTTCTTTGACAATAC
63 CGATCTACTCTCCATCGAATATAGAGATGCCAAATCTATTTATTCAATTTGTTC-TT-ACAATA-
* * *
39845174 AGAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAAAACCTGAAGGTCAGATCTGCTATGTCT
125 AGAGATGACAAATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCT
* * * * * *
39845239 TCAATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTGAATCTGTTTCGTTATGCAAACAT
190 TCAACTTGCCCCTTGTAAACACAAGAATGCCAAATCATCGTGAATATGCTTCGATATGAAAACAT
* * *
39845304 CCAAAGGTTAGATCTGCTATTCCTTCGATCTGCTCTCCGTCGAATATGGAGATCCCAATTCTGTT
255 CCAAAGGTCAGATCTGCTATTCCTTCGATCTACTCTCCGTCGAATATGGAGATCCCAAATCTGTT
*
39845369 TCCTCGATTTTTTCTCTGACAATACAGAG
320 TCCTCGATTTGTTCTCTGACAATACAGAG
*
39845398 ATGCCAAATCATCTTGGATCTGTTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
* * * *
39845463 TCTATTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTC-T-C----AGATAT
66 TCTACTCTCCATCGAATATAGAGATGCCAAATCTATTTATTCAATTTGTTCTTACAATAAGAGAT
* *
39845522 GTAC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCTTCGAC
131 G-ACAAATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCTTCAAC
* * *
39845586 TTGCTCCTTGTAAACACAAGAATG-CAAATCATCGTGGATATGCTTCGATGTGAAAACATCCAAA
195 TTGCCCCTTGTAAACACAAGAATGCCAAATCATCGTGAATATGCTTCGATATGAAAACATCCAAA
* *
39845650 GGTCATATCTGCTA-TCTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTT-CT
260 GGTCAGATCTGCTATTC-CTTCGATCTACTCTCCGTCGAATATGGAGATCCCAAATCTGTTTCCT
39845713 CCGATTTGTTCTCTGACAATACAGAG
324 -CGATTTGTTCTCTGACAATACAGAG
*
39845739 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGATATGTCTTCGA
1 ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
*
39845804 TTTACTC
66 TCTACTC
39845811 CTTGTAAACA
Statistics
Matches: 370, Mismatches: 39, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
340 4 0.01
341 178 0.48
342 84 0.23
343 1 0.00
347 1 0.00
349 1 0.00
350 2 0.01
351 75 0.20
352 1 0.00
353 23 0.06
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (348 bp):
ATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTTCGA
TCTACTCTCCATCGAATATAGAGATGCCAAATCTATTTATTCAATTTGTTCTTACAATAAGAGAT
GACAAATCATCTTAGATCTGCTTCAGTGTAAAAACCTAAAGGTCAGATCTGCTATGTCTTCAACT
TGCCCCTTGTAAACACAAGAATGCCAAATCATCGTGAATATGCTTCGATATGAAAACATCCAAAG
GTCAGATCTGCTATTCCTTCGATCTACTCTCCGTCGAATATGGAGATCCCAAATCTGTTTCCTCG
ATTTGTTCTCTGACAATACAGAG
Found at i:39845892 original size:220 final size:220
Alignment explanation
Indices: 39845398--39847694 Score: 3283
Period size: 220 Copynumber: 10.6 Consensus size: 220
39845388 CAATACAGAG
* * *
39845398 ATGCCAAATCATCTTGGATCTGTTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCC-AAAGGTCAGATCTGCTATGTCTT
** * * * *
39845460 CGATCTATTCTCCGTCGAATATGGAGATGCCAAATCTATTTATTCAATTTGTTCTC--A-GAT--
65 CGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATAC
* * *
39845520 A-TG-T-AC-AATCATCTTAGATCTGCTTCAGTGTAAACACCTAAAGGTCAGATCTGCTATGTCT
130 AGAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCT
*
39845581 TCGACTTGCTCCTTGTAAACACAAGA
195 TCGATTTGCTCCTTGTAAACACAAGA
* * * *
39845607 ATG-CAAATCATCGTGGATATGCTTCGATGTGAAAACATCCAAAGGTCATATCTGCTATCTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* *
39845671 GATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTCCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
39845736 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGATATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39845801 CGATTTACTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
*
39845826 ACGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * *
39845891 GATCTGCTCTCCGTTGAATAAGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * *
39845956 GAGATGCCAAATCATCTTGGATCTGCTTCAGTGCAAACACCTGAAGGCCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
39846021 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
*
39846046 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * ** * *
39846111 GATCTGCTCTCCGTCAAATATGGAGACGCCAAATCTGTTTCTTCAATCCGCTCTCTGACAATATA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * *
39846176 TAGATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
39846241 CGATTTGCTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * *
39846266 ATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACGTCCAAAGGTCAGATATGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * *
39846331 GATCTGCTCTGCATTGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
39846396 GAGATACCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
39846461 TGATTTTCTCCTTGCAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * * *
39846486 ATTCCAAATCATTTTGGATCTGCTTCGATGTGAAATCGTCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * ****
39846551 GATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCACTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
39846616 GAGATGCCAAATCATCTTGGCTCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39846681 CGATTTGCTCCTGGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * ** * *
39846706 ATGCCAAATAATATTGTTTCTGCTTTGATGTGAAAACAACCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
** * *
39846771 GATCTGCTCTCCGTCGAATATAAAGATGCCAAATCTATTTCTTTGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * *
39846836 GAGATGCCAAATCATCTTAGATCTACTTCAATGTAATCACCTGAAGGCCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
39846901 CAATTTGCTCCTTGTAAACAGAATA
196 CGATTTGCTCCTTGTAAACACAAGA
*
39846926 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * * **** *
39846991 GATCTTCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCAATCCCCTCTCTGACAATAGA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
** * *
39847056 GAGATGCCAAATCATCTTAGATCCACTTCAGAGTAAACACCTGAAGGTCAGATCTGCTATGTTTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39847121 CGATTTGCCCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* * *
39847146 ATGCCAAATCATCTTGGATCTGCTTCGATGTAAAAACATCCAAAGGTCAGATCTGCTATATGTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
39847211 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * *
39847276 GAGATGCCAAATCATCTTGGATCTACTTCAGTGTGAACACCTGCAGGTCAGATCTGCTATGTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
* * *
39847341 CAATTTACTCCTCGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* *
39847366 ATTCTAAATCATCTTGGATCTGCTTCGATGTG-----A---AAA---C--ATCT-C----T-TT-
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* *
39847411 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTTTTCGATTTGTTCTCTGACAATACA
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
39847476 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTACTATTTCTT
131 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
*
39847541 CGATTTACTCCTTGTAAACACAAGA
196 CGATTTGCTCCTTGTAAACACAAGA
* *
39847566 ATTCCAATTCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
* * *
39847631 AATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTTGATTTGTTCTCTGACAATAC
66 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATAC
39847695 TCGGTAGTAT
Statistics
Matches: 1857, Mismatches: 198, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
200 175 0.09
201 2 0.00
202 1 0.00
205 1 0.00
206 1 0.00
207 4 0.00
208 22 0.01
209 5 0.00
210 79 0.04
211 3 0.00
212 4 0.00
213 6 0.00
214 1 0.00
215 2 0.00
216 1 0.00
217 1 0.00
218 2 0.00
219 80 0.04
220 1467 0.79
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (220 bp):
ATGCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTGCTATGTCTT
CGATTTGCTCCTTGTAAACACAAGA
Found at i:39846058 original size:87 final size:89
Alignment explanation
Indices: 39845959--39846119 Score: 247
Period size: 89 Copynumber: 1.8 Consensus size: 89
39845949 CAATACAGAG
* * *
39845959 ATGCCAAATCATCTTGGATCTGCTTC-A-GTGCAAACA-CCTGAAGGCCAGATCTGCTATGTCTT
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCC-AAAGGCCAGATCTGCTATGTCTT
*
39846021 CGATTTGCTCCTTGTAAACACAAGA
65 CGATCTGCTCCTTGTAAACACAAGA
*
39846046 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGTCAGATCTGCTATGTCTTC
1 ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
39846111 GATCTGCTC
66 GATCTGCTC
39846120 TCCGTCAAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 38 0.58
90 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (89 bp):
ATGCCAAATCATCTTGGACCTGCTTCGATGTGAAAACATCCAAAGGCCAGATCTGCTATGTCTTC
GATCTGCTCCTTGTAAACACAAGA
Found at i:39846333 original size:89 final size:87
Alignment explanation
Indices: 39846179--39846339 Score: 216
Period size: 89 Copynumber: 1.8 Consensus size: 87
39846169 CAATATATAG
* * * *
39846179 ATGCCAAATCATCTTAGTTCCGCTTCAGTGTAAACACCTGAAGGTCAAATCTGCTATGTCTTCGA
1 ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATATGCTATGTCTTCGA
*
39846244 TTTGCTCCTTGTAAACACAAGA
66 TCTGCTCCTTGTAAACACAAGA
* * *
39846266 ATGCCAAATCATCTTAGATCTGCTTCGATGTGAAAACGTCC-AAAGGTCAGATATGCTATGTCTT
1 ATGCCAAATCATCTTAGATCCGCTTC-A-GTGAAAAC-ACCTAAAGGTCAAATATGCTATGTCTT
39846330 CGATCTGCTC
63 CGATCTGCTC
39846340 TGCATTGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 24 0.38
88 1 0.02
89 36 0.57
90 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (87 bp):
ATGCCAAATCATCTTAGATCCGCTTCAGTGAAAACACCTAAAGGTCAAATATGCTATGTCTTCGA
TCTGCTCCTTGTAAACACAAGA
Found at i:39847560 original size:200 final size:200
Alignment explanation
Indices: 39847211--39847605 Score: 682
Period size: 200 Copynumber: 2.0 Consensus size: 200
39847201 CTATATGTTC
39847211 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
1 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* * * *
39847276 GAGATGCCAAATCATCTTGGATCTACTTCAGTGTGAACACCTGCAGGTCAGATCTGCTATGTCTT
66 GAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTATGTCTT
*
39847341 CAATTTACTCCTCGTAAACACAAGAATTCTAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
131 CAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
39847406 TCTTT
196 TCTTT
* *
39847411 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATTTGTTTTTTCGATTTGTTCTCTGACAATACA
1 GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
* *
39847476 GAGATGCCAAATCATCTTAGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTACTATTTCTT
66 GAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTATGTCTT
* * *
39847541 CGATTTACTCCTTGTAAACACAAGAATTCCAATTCATCTTGGATCTGCTTCGATGTGAAAACATC
131 CAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
39847606 CAAAGGTCAG
Statistics
Matches: 183, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
200 183 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (200 bp):
GATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACA
GAGATGCCAAATCATCTTAGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTACTATGTCTT
CAATTTACTCCTCGTAAACACAAGAATTCCAAATCATCTTGGATCTGCTTCGATGTGAAAACATC
TCTTT
Found at i:39851088 original size:40 final size:40
Alignment explanation
Indices: 39850987--39851197 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
39850977 TATTCGAATG
* * *
39850987 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
39851028 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
39851068 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
39851107 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
39851147 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
39851186 ATATCC-GGCTAA
1 ATATCCGGGCTAA
39851198 ATCCCAAAGA
Statistics
Matches: 141, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
38 6 0.04
39 48 0.34
40 59 0.42
41 28 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:39851151 original size:79 final size:81
Alignment explanation
Indices: 39850987--39851170 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 81
39850977 TATTCGAATG
* * *
39850987 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* * *
39851052 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTGACC
* * *
39851068 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGA-TATATCCGGGCTAAG-TCCTGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCC-GAAGG
*
39851130 CATTTATGCTAGTGACC
65 CATTTATGCGAGTGACC
39851147 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
39851171 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 4 0.04
81 29 0.32
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTGACC
Found at i:39851189 original size:79 final size:80
Alignment explanation
Indices: 39850987--39851201 Score: 235
Period size: 79 Copynumber: 2.7 Consensus size: 80
39850977 TATTCGAATG
* * *
39850987 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGGA-TATATCCGGGCTAAGATCCGAAGG
* * *
39851051 CATTTGTGCGAGTTACT
64 CATTTATGCGAGTGACC
* * * *
39851068 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAG-CGATATATCCGGGCTAAG-TCCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGATATATCCGGGCTAAGATCC-GAAGGC
*
39851131 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
39851147 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGCTAA-ATCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGATATATCCGGGCTAAGATCC
39851202 CAAAGATACT
Statistics
Matches: 114, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 20 0.18
79 62 0.54
80 4 0.04
81 28 0.25
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGATATATCCGGGCTAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:39854466 original size:28 final size:28
Alignment explanation
Indices: 39854405--39854532 Score: 168
Period size: 28 Copynumber: 4.5 Consensus size: 28
39854395 CATGAGATTG
* * *
39854405 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTGTATA
*
39854434 GCACTAAGTGTGCAAGTTTGATTGTATA
1 GCACTAAGTGTGCGAGTTTGATTGTATA
39854462 GCACTAAGTGTGCGAGTTTGATTATGTA-A
1 GCACTAAGTGTGCGAGTTTGA-T-TGTATA
*
39854491 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTGTATA
*
39854519 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
39854533 GACTTACTAT
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.03
28 42 0.47
29 40 0.45
30 4 0.04
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTGTATA
Found at i:39854494 original size:57 final size:57
Alignment explanation
Indices: 39854405--39854532 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
39854395 CATGAGATTG
* *
39854405 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTGTATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
39854462 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
39854519 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
39854533 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:39856474 original size:7 final size:7
Alignment explanation
Indices: 39856462--39856531 Score: 63
Period size: 7 Copynumber: 9.9 Consensus size: 7
39856452 GCCTATCCAA
39856462 TTTTTTC
1 TTTTTTC
39856469 TTTTTTC
1 TTTTTTC
39856476 TTTTTTC
1 TTTTTTC
39856483 TCTTTTT-
1 T-TTTTTC
* *
39856490 TCTTTCTA
1 T-TTTTTC
39856498 TTTTTTC
1 TTTTTTC
39856505 TCTTTTTC
1 T-TTTTTC
*
39856513 TTTTCT-
1 TTTTTTC
*
39856519 TTTTTTA
1 TTTTTTC
39856526 TTTTTT
1 TTTTTT
39856532 TTTGAAATAG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
6 5 0.09
7 36 0.67
8 13 0.24
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:39856481 original size:9 final size:9
Alignment explanation
Indices: 39856469--39856534 Score: 53
Period size: 9 Copynumber: 6.7 Consensus size: 9
39856459 CAATTTTTTC
39856469 TTTTTTCTT
1 TTTTTTCTT
*
39856478 TTTTCTCTTT
1 TTTTTTC-TT
39856488 TTTCTTTCTAT
1 TTT-TTTCT-T
39856499 TTTTTCTCTTT
1 TTTTT-TC-TT
39856510 TTCTTTTCTT
1 TT-TTTTCTT
39856520 TTTTTAT-TT
1 TTTTT-TCTT
39856529 TTTTTT
1 TTTTTT
39856535 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
8 1 0.02
9 16 0.33
10 13 0.27
11 14 0.29
12 4 0.08
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:39856486 original size:16 final size:15
Alignment explanation
Indices: 39856462--39856531 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 15
39856452 GCCTATCCAA
39856462 TTTTTTCTTTTTTCT
1 TTTTTTCTTTTTTCT
39856477 TTTTTCTCTTTTTTC-
1 TTTTT-TCTTTTTTCT
* *
39856492 -TTTCTATTTTTTCT
1 TTTTTTCTTTTTTCT
*
39856506 CTTTTTC--TTTTCT
1 TTTTTTCTTTTTTCT
*
39856519 TTTTTTATTTTTT
1 TTTTTTCTTTTTT
39856532 TTTGAAATAG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 19 0.43
14 3 0.07
15 13 0.30
16 9 0.20
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTCTTTTTTCT
Found at i:39856495 original size:13 final size:12
Alignment explanation
Indices: 39856462--39856534 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 12
39856452 GCCTATCCAA
39856462 TTTTTTCTTT-T
1 TTTTTTCTTTCT
*
39856473 TTCTTT-TTTCT
1 TTTTTTCTTTCT
39856484 CTTTTTTCTTTCT
1 -TTTTTTCTTTCT
39856497 ATTTTTTC--TCT
1 -TTTTTTCTTTCT
*
39856508 TTTTCT-TTTCT
1 TTTTTTCTTTCT
*
39856519 TTTTTTATTT-T
1 TTTTTTCTTTCT
39856530 TTTTT
1 TTTTT
39856535 GAAATAGAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
10 8 0.16
11 23 0.45
12 8 0.16
13 12 0.24
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTCTTTCT
Found at i:39856501 original size:22 final size:22
Alignment explanation
Indices: 39856462--39856533 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 22
39856452 GCCTATCCAA
*
39856462 TTTTTTCTTTTTTCTTTTTTCTC
1 TTTTTTCTTTTCT-TTTTTTCTC
39856485 TTTTTTC-TTTCTATTTTTTCTC
1 TTTTTTCTTTTCT-TTTTTTCTC
* *
39856507 -TTTTTCTTTTCTTTTTTTATT
1 TTTTTTCTTTTCTTTTTTTCTC
39856528 TTTTTT
1 TTTTTT
39856534 TGAAATAGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
21 13 0.30
22 23 0.53
23 7 0.16
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTCTTTTCTTTTTTTCTC
Found at i:39862131 original size:22 final size:21
Alignment explanation
Indices: 39862101--39862166 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
39862091 TACAAATTAA
39862101 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
39862123 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
39862144 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
39862163 ATCT
1 ATCT
39862167 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:39862153 original size:19 final size:19
Alignment explanation
Indices: 39862118--39862215 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
39862108 AGATTACAAG
39862118 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
39862139 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
39862158 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
39862175 ATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
39862194 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
39862213 ATC
1 ATC
39862216 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:39862187 original size:36 final size:37
Alignment explanation
Indices: 39862118--39862215 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
39862108 AGATTACAAG
39862118 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
39862158 ATCATATCTAAGATTG-TATCATATTTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
39862194 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
39862216 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:39865673 original size:17 final size:17
Alignment explanation
Indices: 39865651--39865687 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
39865641 TTTAGGTATA
39865651 ATTGCAATTCAAAAATC
1 ATTGCAATTCAAAAATC
39865668 ATTGCAATTCAAAAATC
1 ATTGCAATTCAAAAATC
39865685 ATT
1 ATT
39865688 CTTGTGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (17 bp):
ATTGCAATTCAAAAATC
Found at i:39869352 original size:51 final size:51
Alignment explanation
Indices: 39869290--39869398 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
39869280 GTTTCAATCC
*
39869290 TTTTCATAATTTCATGACATAGTTCATTCGAATACATACCTTTCCTTTCCT
1 TTTTCATAATTTCATGACATAGTTCATTCGAACACATACCTTTCCTTTCCT
* * *
39869341 TTTTTATAATTTCATGACATAGTTCATTTGAACACATACCTTTCTTTTCCT
1 TTTTCATAATTTCATGACATAGTTCATTCGAACACATACCTTTCCTTTCCT
39869392 TTTTCAT
1 TTTTCAT
39869399 GCCCGTTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.49
Consensus pattern (51 bp):
TTTTCATAATTTCATGACATAGTTCATTCGAACACATACCTTTCCTTTCCT
Found at i:39871256 original size:94 final size:94
Alignment explanation
Indices: 39871090--39871264 Score: 305
Period size: 94 Copynumber: 1.9 Consensus size: 94
39871080 TTAAATTATG
* *
39871090 TTTTAATTATTATTTATCTAAAACTCTTTTAAATAATAATTAAATTCTATTTCCTTATCTGATAA
1 TTTTAATTATTATTTATATAAAACTCTTTTAAATAATAATTAAATTCTATTTCCGTATCTGATAA
39871155 GGAATATATAAAATCCTTTTGATTTTGAA
66 GGAATATATAAAATCCTTTTGATTTTGAA
*
39871184 TTTTAATTATTATTTATATAGAACTCTTTTAAATAATAATTAAATTCTATTTCCGTATCTGATAA
1 TTTTAATTATTATTTATATAAAACTCTTTTAAATAATAATTAAATTCTATTTCCGTATCTGATAA
* *
39871249 GGGATATATCAAATCC
66 GGAATATATAAAATCC
39871265 CCTTTTTATC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.46
Consensus pattern (94 bp):
TTTTAATTATTATTTATATAAAACTCTTTTAAATAATAATTAAATTCTATTTCCGTATCTGATAA
GGAATATATAAAATCCTTTTGATTTTGAA
Found at i:39875584 original size:24 final size:24
Alignment explanation
Indices: 39875557--39875604 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
39875547 AGAAAAAACA
39875557 TCGCTTTAGCTTTTCAATTTAGCT
1 TCGCTTTAGCTTTTCAATTTAGCT
*
39875581 TCGCTTTAGCTTTTTAATTTAGCT
1 TCGCTTTAGCTTTTCAATTTAGCT
39875605 AGATTCAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (24 bp):
TCGCTTTAGCTTTTCAATTTAGCT
Found at i:39876704 original size:40 final size:40
Alignment explanation
Indices: 39876647--39876797 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 40
39876637 AGCTTTAGTG
*
39876647 GCATTAGCGGCGTTTTTTGAAAAACGCCGCTATAGATCAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
* * * ** * * *
39876687 GCATTAGCGGTGCTTTTTTAAAAAATGCCAATATTGGTCGA
1 GCATTAGCGGCGC-TTTTTGAAAAACGCCGCTATAGATCAA
* * *
39876728 CCATTAGAGGCGCTTTATGAAAAACGCCGCTATAGATCGAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATC-AA
*
39876769 -CATTAGCGGCGCTTTTTGAAAAATGCCGC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGC
39876798 AAAATCATTT
Statistics
Matches: 86, Mismatches: 23, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
40 55 0.64
41 31 0.36
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCAA
Found at i:39877017 original size:13 final size:13
Alignment explanation
Indices: 39876999--39877031 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
39876989 ATATATTTAG
39876999 GGTTTATGGTGTA
1 GGTTTATGGTGTA
39877012 GGTTTATGGTGTA
1 GGTTTATGGTGTA
39877025 GGATTTA
1 GG-TTTA
39877032 GGATTTAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (13 bp):
GGTTTATGGTGTA
Found at i:39877686 original size:9 final size:8
Alignment explanation
Indices: 39877668--39877761 Score: 72
Period size: 7 Copynumber: 11.9 Consensus size: 8
39877658 TTTATATGTT
39877668 AATTTAAA
1 AATTTAAA
39877676 AATTATAAA
1 AATT-TAAA
39877685 AATCTTCAAAA
1 AAT-TT--AAA
39877696 AATTT-AA
1 AATTTAAA
39877703 AATTT-AA
1 AATTTAAA
*
39877710 AATCTAAA
1 AATTTAAA
39877718 AA-TTAAA
1 AATTTAAA
39877725 AA-TTAAA
1 AATTTAAA
*
39877732 TA-TTAAA
1 AATTTAAA
*
39877739 AATTAAAA
1 AATTTAAA
*
39877747 AACTTAAA
1 AATTTAAA
*
39877755 TATTTAA
1 AATTTAA
39877762 TATTTAATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
7 31 0.44
8 23 0.32
9 8 0.11
10 3 0.04
11 6 0.08
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (8 bp):
AATTTAAA
Found at i:39877706 original size:7 final size:7
Alignment explanation
Indices: 39877694--39877773 Score: 61
Period size: 7 Copynumber: 11.0 Consensus size: 7
39877684 AAATCTTCAA
39877694 AAAATTT
1 AAAATTT
39877701 AAAATTT
1 AAAATTT
*
39877708 AAAATCT
1 AAAATTT
*
39877715 AAAAATT
1 AAAATTT
*
39877722 AAAAATT
1 AAAATTT
*
39877729 AAATATTA
1 AAA-ATTT
*
39877737 AAAATTAA
1 AAAATT-T
*
39877745 AAAACTT
1 AAAATTT
39877752 AAATATTT
1 AAA-ATTT
*
39877760 AATATTT
1 AAAATTT
*
39877767 AATATTT
1 AAAATTT
39877774 TATTCCATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
7 45 0.74
8 16 0.26
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.39
Consensus pattern (7 bp):
AAAATTT
Found at i:39877723 original size:21 final size:21
Alignment explanation
Indices: 39877693--39877758 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 21
39877683 AAAATCTTCA
*
39877693 AAAAATTTAAAATTTAAA-ATCT
1 AAAAA-TTAAAAATTAAATAT-T
39877715 AAAAATTAAAAATTAAATATT
1 AAAAATTAAAAATTAAATATT
39877736 AAAAATTAAAAAACTTAAATATT
1 AAAAATT-AAAAA-TTAAATATT
39877759 TAATATTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
21 19 0.47
22 12 0.30
23 9 0.22
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAATTAAAAATTAAATATT
Found at i:39882491 original size:43 final size:42
Alignment explanation
Indices: 39882370--39882633 Score: 235
Period size: 43 Copynumber: 6.2 Consensus size: 42
39882360 TTACTTTTAA
* * * * *
39882370 ATGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCTGCTAAAGGTCT
1 ATGTTCTTTAGCGGCATTTGTGGGAAAAACGC-GCTAAAGG-CC
* * * * * *
39882414 AT-AT-TATAGTGGCATTTGTGGCAAAAGCGCCGCTAAAGGTC
1 ATGTTCTTTAGCGGCATTTGTGGGAAAAACG-CGCTAAAGGCC
**
39882455 ATGTTCTTTAGCGGCATTTGTCAGAAAAACGTCGCTAAAGGCC
1 ATGTTCTTTAGCGGCATTTGTGGGAAAAACG-CGCTAAAGGCC
* * *
39882498 ATGTTCTTTAGCGGCTTTTGTGGGGAAAAGCGCCCTAAAGGCC
1 ATGTTCTTTAGCGGCATTTGT-GGGAAAAACGCGCTAAAGGCC
* **
39882541 ATGTTCTTTAGCAGCATTTGTGGGAAAAGGGCTGCTAAAGGCC
1 ATGTTCTTTAGCGGCATTTGTGGGAAAAACGC-GCTAAAGGCC
* ** * *
39882584 ATGTTCTTTAGCAGTGTTTTTGGGAAAAACGCCGCTAAAGGTC
1 ATGTTCTTTAGCGGCATTTGTGGGAAAAACG-CGCTAAAGGCC
39882627 ATGTTCT
1 ATGTTCT
39882634 ATAGTGTTGT
Statistics
Matches: 181, Mismatches: 33, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
41 2 0.01
42 38 0.21
43 131 0.72
44 10 0.06
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
ATGTTCTTTAGCGGCATTTGTGGGAAAAACGCGCTAAAGGCC
Found at i:39882558 original size:86 final size:87
Alignment explanation
Indices: 39882428--39882633 Score: 278
Period size: 86 Copynumber: 2.4 Consensus size: 87
39882418 TATAGTGGCA
* * *
39882428 TTTGTGGCAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCATTTGTCAGAAAAACGTC-GCTA
1 TTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGT-AGAAAAACGGCTGCTA
39882492 AAGGCCATGTTCTTTAGC-G-GCT
65 AAGGCCATGTTCTTTAGCAGTG-T
* * * *
39882514 TTTGTGGGGAAAAGCGCC-CTAAAGGCCATGTTCTTTAGCAGCATTTGTGGGAAAAGGGCTGCTA
1 TTTGT-GGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGTAGAAAAACGGCTGCTA
39882578 AAGGCCATGTTCTTTAGCAGTGT
65 AAGGCCATGTTCTTTAGCAGTGT
*
39882601 TTT-TGGGAAAAACGCCGCTAAAGGTCATGTTCT
1 TTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCT
39882634 ATAGTGTTGT
Statistics
Matches: 106, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
85 18 0.17
86 71 0.67
87 16 0.15
88 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (87 bp):
TTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCATTTGTAGAAAAACGGCTGCTAA
AGGCCATGTTCTTTAGCAGTGT
Found at i:39886540 original size:42 final size:42
Alignment explanation
Indices: 39886433--39886550 Score: 148
Period size: 43 Copynumber: 2.8 Consensus size: 42
39886423 GTACTAATGT
* * * *
39886433 CATATCCCAAATATGGTGTTACATGTAATCTTATATCGATGC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGC
* * *
39886475 CAATAGCCCAGCTATGATCTTACACG-AAGTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGC
39886518 CATATCCCAGATATGGTCTTACACGTAATCTCA
1 CATATCCCAGATATGGTCTTACACGTAATCTCA
39886551 ATGACCATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGC
Found at i:39890112 original size:39 final size:40
Alignment explanation
Indices: 39890067--39890213 Score: 210
Period size: 39 Copynumber: 3.7 Consensus size: 40
39890057 ACTACTTGCT
39890067 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
39890107 -GAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
39890146 CAAATGCCTTTGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
39890185 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
39890214 CATCCGAATA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 70 0.74
40 22 0.23
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:39900591 original size:29 final size:27
Alignment explanation
Indices: 39900510--39900623 Score: 106
Period size: 28 Copynumber: 4.1 Consensus size: 27
39900500 CATACATGTA
* *
39900510 TATG-GCCCACTAGGCCCAATCTC-TT
1 TATGAGCCCATTAGGCCCAATCACATT
*
39900535 TCATGTGGCCCATTAGGCCCAATCACATT
1 T-ATG-AGCCCATTAGGCCCAATCACATT
* *
39900564 TATGAAGCCCATTATGCCTAAATCACATT
1 TATG-AGCCCATTAGGCC-CAATCACATT
* * *
39900593 CATGCGGCCATTAGGCCCAATCACATT
1 TATGAGCCCATTAGGCCCAATCACATT
39900620 TATG
1 TATG
39900624 GTCATGCTCA
Statistics
Matches: 72, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.01
26 3 0.04
27 12 0.17
28 41 0.57
29 15 0.21
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (27 bp):
TATGAGCCCATTAGGCCCAATCACATT
Found at i:39905621 original size:46 final size:46
Alignment explanation
Indices: 39905546--39905674 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
39905536 TGTAACCCGC
* * * * *
39905546 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCAT
* *
39905592 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCAT
39905638 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
39905675 TGCTCAACCA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTCGCAT
Found at i:39905693 original size:46 final size:45
Alignment explanation
Indices: 39905554--39905693 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
39905544 GCCCATAAGC
* * ** *
39905554 GAACTCAGACTCAACTCAACGAGCTCGGGCGCTC-GCATCCGTAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
39905600 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
39905646 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
39905692 GA
1 GA
39905694 CATGTCACTT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
46 76 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:39913195 original size:93 final size:93
Alignment explanation
Indices: 39913083--39913254 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
39913073 CGCCCATAAG
* * *
39913083 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
39913148 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
39913176 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
39913241 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
39913255 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:39913251 original size:46 final size:45
Alignment explanation
Indices: 39913077--39913251 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
39913067 GTAACCCGCC
* * * *
39913077 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
39913122 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
39913172 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
39913215 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
39913252 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 2 0.02
46 62 0.57
47 29 0.27
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:39934822 original size:13 final size:13
Alignment explanation
Indices: 39934804--39934828 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39934794 TGGTCATCAT
39934804 GGTGTGAACACAA
1 GGTGTGAACACAA
39934817 GGTGTGAACACA
1 GGTGTGAACACA
39934829 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:39935348 original size:10 final size:10
Alignment explanation
Indices: 39935335--39935372 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
39935325 TTGTAGCTAA
39935335 ATTGAGCTCG
1 ATTGAGCTCG
39935345 ATTGAGCT-G
1 ATTGAGCTCG
39935354 ACTTGAGCTCG
1 A-TTGAGCTCG
*
39935365 AGTGAGCT
1 ATTGAGCT
39935373 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:39935352 original size:20 final size:20
Alignment explanation
Indices: 39935312--39935372 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
39935302 ACCAATAAAA
39935312 TAAA-TGAGCT-GAATTGTAGC
1 TAAATTGAGCTCG-ATTG-AGC
39935332 TAAATTGAGCTCGATTGAGC
1 TAAATTGAGCTCGATTGAGC
* * *
39935352 TGACTTGAGCTCGAGTGAGC
1 TAAATTGAGCTCGATTGAGC
39935372 T
1 T
39935373 GGAAACGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 25 0.69
21 10 0.28
22 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TAAATTGAGCTCGATTGAGC
Found at i:39935373 original size:20 final size:20
Alignment explanation
Indices: 39935336--39935373 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
39935326 TGTAGCTAAA
*
39935336 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
39935356 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
39935374 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:39940750 original size:13 final size:13
Alignment explanation
Indices: 39940732--39940760 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
39940722 AATAGTTGTG
39940732 TGTTATTTAATTA
1 TGTTATTTAATTA
39940745 TGTTATTTAATTA
1 TGTTATTTAATTA
39940758 TGT
1 TGT
39940761 AGGTTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:39942351 original size:22 final size:22
Alignment explanation
Indices: 39942323--39942366 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
39942313 TTTTGAACCA
*
39942323 TTACCATTTCGTACCAAATCCT
1 TTACCATTTAGTACCAAATCCT
*
39942345 TTACCATTTAGTACCAATTCCT
1 TTACCATTTAGTACCAAATCCT
39942367 AAATACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.30, G:0.05, T:0.39
Consensus pattern (22 bp):
TTACCATTTAGTACCAAATCCT
Found at i:39944615 original size:18 final size:18
Alignment explanation
Indices: 39944592--39944641 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
39944582 GAAAGAAAAA
*
39944592 GAAAAAGAGATTGAGAGT
1 GAAAAAGAGAATGAGAGT
* *
39944610 GAAAAAGAAAATGAGATT
1 GAAAAAGAGAATGAGAGT
39944628 GAAAAAGAGAATGA
1 GAAAAAGAGAATGA
39944642 AAAAGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.58, C:0.00, G:0.28, T:0.14
Consensus pattern (18 bp):
GAAAAAGAGAATGAGAGT
Found at i:39944618 original size:24 final size:24
Alignment explanation
Indices: 39944585--39944664 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
39944575 AAGAAATGAA
39944585 AGAAAAAGAAAAAGAGATTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
* * * *
39944609 TGAAAAAGAAAATGAGATTGAAAA
1 AGAAAAAGAAAAAGAGATTGAGAG
* * *
39944633 AGAGAATGAAAAAGAGTTTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
39944657 AGAAAAAG
1 AGAAAAAG
39944665 CATGTCAACA
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (24 bp):
AGAAAAAGAAAAAGAGATTGAGAG
Found at i:39949752 original size:11 final size:11
Alignment explanation
Indices: 39949736--39949804 Score: 57
Period size: 11 Copynumber: 5.7 Consensus size: 11
39949726 GAGAGCAGAA
39949736 TTTTCTTTGAG
1 TTTTCTTTGAG
* *
39949747 TTTTCTCTAAG
1 TTTTCTTTGAG
39949758 ATTTCTCTCTTGAG
1 -TTT-TCT-TTGAG
*
39949772 TTTTCTTTAAG
1 TTTTCTTTGAG
39949783 ATTTCTCTCTTGAG
1 -TTT-TCT-TTGAG
39949797 TTTTCTTT
1 TTTTCTTT
39949805 AGAAGTTGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
11 15 0.33
12 12 0.26
13 12 0.26
14 7 0.15
ACGTcount: A:0.13, C:0.16, G:0.12, T:0.59
Consensus pattern (11 bp):
TTTTCTTTGAG
Found at i:39949803 original size:25 final size:25
Alignment explanation
Indices: 39949735--39949805 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
39949725 TGAGAGCAGA
*
39949735 ATTT-TCT-TTGAGTTTTCTCTAAG
1 ATTTCTCTCTTGAGTTTTCTTTAAG
39949758 ATTTCTCTCTTGAGTTTTCTTTAAG
1 ATTTCTCTCTTGAGTTTTCTTTAAG
39949783 ATTTCTCTCTTGAGTTTTCTTTA
1 ATTTCTCTCTTGAGTTTTCTTTA
39949806 GAAGTTGTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 4 0.09
24 3 0.07
25 38 0.84
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.58
Consensus pattern (25 bp):
ATTTCTCTCTTGAGTTTTCTTTAAG
Found at i:39951911 original size:18 final size:18
Alignment explanation
Indices: 39951890--39951928 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
39951880 GATTGAGAGT
* *
39951890 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
39951908 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
39951926 GAA
1 GAA
39951929 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:39953336 original size:4 final size:4
Alignment explanation
Indices: 39953327--39953354 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
39953317 AAGTTTTATT
39953327 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
39953355 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:39955032 original size:20 final size:20
Alignment explanation
Indices: 39954985--39955032 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
39954975 AGTAAGCTCG
39954985 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
39955005 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
39955025 GTTGAGCT
1 GTTGAGCT
39955033 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:39956704 original size:11 final size:12
Alignment explanation
Indices: 39956674--39956705 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
39956664 TTTCACTCTT
39956674 CTCTTTTTCAAA
1 CTCTTTTTCAAA
39956686 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
39956698 TTCTTTTT
1 CTCTTTTT
39956706 TCGCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:39956717 original size:27 final size:27
Alignment explanation
Indices: 39956687--39956748 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
39956677 TTTTTCAAAC
*
39956687 TCTTTTTCAAATTCTT-TTTTC-GCTTTT
1 TCTTTTTC-AATT-TTCTTTTCTGCATTT
*
39956714 TCTTTTTCAATTTTCTTTTCTTCATTT
1 TCTTTTTCAATTTTCTTTTCTGCATTT
39956741 TCTTTTTC
1 TCTTTTTC
39956749 TCTCACTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 9 0.29
27 20 0.65
ACGTcount: A:0.10, C:0.19, G:0.02, T:0.69
Consensus pattern (27 bp):
TCTTTTTCAATTTTCTTTTCTGCATTT
Found at i:39956727 original size:13 final size:12
Alignment explanation
Indices: 39956711--39956830 Score: 63
Period size: 12 Copynumber: 10.0 Consensus size: 12
39956701 TTTTTTCGCT
39956711 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
39956724 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
39956738 TTTTCTTTTTC-
1 TTTTCTTTTTCA
** *
39956749 TCTCACTTTTTTGA
1 T-TTTC-TTTTTCA
39956763 -TTTCTTTTTC-
1 TTTTCTTTTTCA
** *
39956773 TTTTGCAATTTCT
1 TTTT-CTTTTTCA
*
39956786 TTTTCTTTTTCG
1 TTTTCTTTTTCA
*
39956798 TTTTCTTTTT-G
1 TTTTCTTTTTCA
39956809 TTTTC--TTTCA
1 TTTTCTTTTTCA
*
39956819 ATTTCTTTTTCA
1 TTTTCTTTTTCA
39956831 ATCTCTTTCT
Statistics
Matches: 83, Mismatches: 13, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
9 3 0.04
10 4 0.05
11 15 0.18
12 32 0.39
13 17 0.20
14 9 0.11
15 3 0.04
ACGTcount: A:0.08, C:0.17, G:0.03, T:0.71
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:39956740 original size:14 final size:14
Alignment explanation
Indices: 39956689--39956747 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
39956679 TTTCAAACTC
*
39956689 TTTTTCAA-ATTCT
1 TTTTTCAATTTTCT
**
39956702 TTTTTCGCTTTT-T
1 TTTTTCAATTTTCT
39956715 CTTTTTCAATTTTCT
1 -TTTTTCAATTTTCT
39956730 TTTCTTC-ATTTTCT
1 TTT-TTCAATTTTCT
39956744 TTTT
1 TTTT
39956748 CTCTCACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 8 0.22
14 25 0.68
15 4 0.11
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (14 bp):
TTTTTCAATTTTCT
Found at i:39956829 original size:6 final size:6
Alignment explanation
Indices: 39956709--39956816 Score: 67
Period size: 6 Copynumber: 17.7 Consensus size: 6
39956699 TCTTTTTTCG
* * * **
39956709 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * ** *
39956760 -TGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
39956808 -GTTTT CTTT
1 CTTTTT CTTT
39956817 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 23, Indels: 10
0.69 0.21 0.09
Matches are distributed among these distances:
5 5 0.07
6 56 0.76
7 10 0.14
8 3 0.04
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:39957869 original size:14 final size:13
Alignment explanation
Indices: 39957851--39957910 Score: 56
Period size: 14 Copynumber: 4.8 Consensus size: 13
39957841 TTGAAACATG
39957851 ATTTTTTTTGCTC
1 ATTTTTTTTGCTC
39957864 ACTTTTTTTT--TC
1 A-TTTTTTTTGCTC
*
39957876 TTTTTTTTTGCTC
1 ATTTTTTTTGCTC
*
39957889 GATTTTTTTTACT-
1 -ATTTTTTTTGCTC
39957902 -TTTTTTTTG
1 ATTTTTTTTG
39957911 AATTTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
11 16 0.41
12 2 0.05
13 3 0.08
14 18 0.46
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.75
Consensus pattern (13 bp):
ATTTTTTTTGCTC
Found at i:39957894 original size:24 final size:25
Alignment explanation
Indices: 39957852--39957910 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
39957842 TGAAACATGA
*
39957852 TTTTTTTTGCTCACTTTTTTTTTCT
1 TTTTTTTTGCTCACTTTTTTTTACT
39957877 TTTTTTTTGCTCGA-TTTTTTTTACT
1 TTTTTTTTGCTC-ACTTTTTTTTACT
39957902 TTTTTTTTG
1 TTTTTTTTG
39957911 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (25 bp):
TTTTTTTTGCTCACTTTTTTTTACT
Found at i:39957917 original size:13 final size:13
Alignment explanation
Indices: 39957901--39957949 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 13
39957891 TTTTTTTTAC
*
39957901 TTTTTTTTTGAAT
1 TTTTTTTTTCAAT
39957914 TTTTTTTTCAATCAAT
1 TTTTTTTT---TCAAT
39957930 TTTTTTTTTCAAT
1 TTTTTTTTTCAAT
39957943 TTTTTTT
1 TTTTTTT
39957950 GACTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 20 0.62
16 12 0.38
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTCAAT
Found at i:39957957 original size:25 final size:24
Alignment explanation
Indices: 39957852--39957962 Score: 84
Period size: 24 Copynumber: 4.4 Consensus size: 24
39957842 TGAAACATGA
* * *
39957852 TTTTTTTTGCTCACTTTTTTTTTC
1 TTTTTTTTTCTCAATTTTTTTTAC
*
39957876 TTTTTTTTTGCTCGATTTTTTTTAC
1 TTTTTTTTT-CTCAATTTTTTTTAC
*
39957901 -TTTTTTTT-TGAATTTTTTTTTCAATC
1 TTTTTTTTTCTCAA-TTTTTTTT--A-C
39957927 AATTTTTTTTT-TCAATTTTTTTTGAC
1 --TTTTTTTTTCTCAATTTTTTTT-AC
39957953 TTTTTTTTTC
1 TTTTTTTTTC
39957963 GTTACGAACC
Statistics
Matches: 70, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
22 2 0.03
23 8 0.11
24 25 0.36
25 13 0.19
26 2 0.03
27 1 0.01
28 8 0.11
29 11 0.16
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.74
Consensus pattern (24 bp):
TTTTTTTTTCTCAATTTTTTTTAC
Found at i:39959423 original size:20 final size:20
Alignment explanation
Indices: 39959376--39959423 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
39959366 AGTAAGCTCG
39959376 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
39959396 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
39959416 GTTGAGCT
1 GTTGAGCT
39959424 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:39960715 original size:23 final size:22
Alignment explanation
Indices: 39960689--39960741 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
39960679 TTAAGAGTGA
*
39960689 AAAAGAAATT-GAAGAAAGAAGAG
1 AAAAGAAATTAGAA-AAAGAA-AC
39960712 AAAATG-AATTAGAAAAAGAAAC
1 AAAA-GAAATTAGAAAAAGAAAC
39960734 AAAAGAAA
1 AAAAGAAA
39960742 AAGACGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAGAAATTAGAAAAAGAAAC
Found at i:39961679 original size:25 final size:23
Alignment explanation
Indices: 39961635--39961682 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
39961625 TTTGTTGAGA
39961635 GCAAAATTTTCTTTGAGTTTTCT
1 GCAAAATTTTCTTTGAGTTTTCT
*
39961658 GCAAGATTTCTCTCTTGAGTTTTCT
1 GCAAAATTT-TCT-TTGAGTTTTCT
39961683 TTAGAAGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.36
24 3 0.14
25 11 0.50
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (23 bp):
GCAAAATTTTCTTTGAGTTTTCT
Found at i:39963008 original size:13 final size:13
Alignment explanation
Indices: 39962990--39963019 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
39962980 AATAGTTGTG
39962990 TGTTATTTAATTA
1 TGTTATTTAATTA
39963003 TGTTATTTAATTA
1 TGTTATTTAATTA
39963016 TGTT
1 TGTT
39963020 GGTTAGCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (13 bp):
TGTTATTTAATTA
Found at i:39964893 original size:12 final size:12
Alignment explanation
Indices: 39964876--39964907 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
39964866 TTGTAGATTC
*
39964876 AAAAAAAATTGA
1 AAAAAAAATCGA
39964888 AAAAAAAATCGA
1 AAAAAAAATCGA
39964900 AAAAAAAA
1 AAAAAAAA
39964908 ATATTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.03, G:0.06, T:0.09
Consensus pattern (12 bp):
AAAAAAAATCGA
Found at i:39964894 original size:13 final size:13
Alignment explanation
Indices: 39964876--39964928 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 13
39964866 TTGTAGATTC
39964876 AAAAAAAATTG-A
1 AAAAAAAATTGAA
*
39964888 AAAAAAAATCGAAA
1 AAAAAAAATTG-AA
39964902 AAAAAAATATTTTGAA
1 AAAAAAA-A--TTGAA
39964918 AAAAAAAATTG
1 AAAAAAAATTG
39964929 CATACGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
12 10 0.29
13 3 0.09
14 8 0.24
15 2 0.06
16 9 0.26
17 2 0.06
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.19
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:39970598 original size:20 final size:20
Alignment explanation
Indices: 39970552--39970598 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
39970542 AGCTCGTTTC
*
39970552 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
39970572 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
39970592 CAGCTCA
1 CAGCTCA
39970599 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:39972021 original size:11 final size:10
Alignment explanation
Indices: 39971992--39972019 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
39971982 GTTCGTAACG
39971992 AAAAAAAATC
1 AAAAAAAATC
39972002 AAAAAAAATC
1 AAAAAAAATC
39972012 AAAAAAAA
1 AAAAAAAA
39972020 ATTTTGAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.86, C:0.07, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:39972115 original size:11 final size:11
Alignment explanation
Indices: 39972099--39972134 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
39972089 AAAAGAGAGG
39972099 AAATTCAAAAA
1 AAATTCAAAAA
39972110 AAATTCAAAAA
1 AAATTCAAAAA
39972121 AAA-TCAGAAAA
1 AAATTCA-AAAA
39972132 AAA
1 AAA
39972135 GGAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 3 0.12
11 21 0.88
ACGTcount: A:0.75, C:0.08, G:0.03, T:0.14
Consensus pattern (11 bp):
AAATTCAAAAA
Found at i:39973383 original size:48 final size:47
Alignment explanation
Indices: 39973283--39973388 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
39973273 GAGTGTCATG
* *
39973283 GAAAAAGAAATTGAGATTGAAAAAGGTTGTGAAAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGTTGGGAAAAAGAG-AAGAAATC
*
39973331 GAAAAAGAAATTGAGATTGAACAAAAGTATGAGGAAAAAGAG-A-AAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGT-TG-GGAAAAAGAGAAGAAATC
39973379 GAAAAAGAAA
1 GAAAAAGAAA
39973389 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 35 0.67
49 6 0.12
50 2 0.04
51 9 0.17
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.15
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGTTGGGAAAAAGAGAAGAAATC
Found at i:39974697 original size:9 final size:9
Alignment explanation
Indices: 39974679--39974712 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
39974669 ATTCCCGCAA
39974679 AAAAATAGTC
1 AAAAA-AGTC
39974689 AAAAAAGTC
1 AAAAAAGTC
*
39974698 AAAAAAATC
1 AAAAAAGTC
39974707 AAAAAA
1 AAAAAA
39974713 TACGAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.12
Consensus pattern (9 bp):
AAAAAAGTC
Found at i:39979890 original size:20 final size:20
Alignment explanation
Indices: 39979844--39979890 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
39979834 AGCTCGTTTC
*
39979844 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
39979864 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
39979884 CAGCTCA
1 CAGCTCA
39979891 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:39983759 original size:14 final size:14
Alignment explanation
Indices: 39983737--39983784 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
39983727 ACCTAAACCG
* *
39983737 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
39983751 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
39983765 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
39983779 ACCATT
1 ACCATT
39983785 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:39988357 original size:6 final size:6
Alignment explanation
Indices: 39988346--39988371 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
39988336 GTAAATAAAT
39988346 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
39988372 CTTTACAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:39988548 original size:21 final size:23
Alignment explanation
Indices: 39988494--39988548 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
39988484 CTTTTGTGAC
*
39988494 TCGTATCAAGCAGCTCATTAAAT
1 TCGTATCCAGCAGCTCATTAAAT
*
39988517 TCGTCAACCAGCAGCTCATTAAA-
1 TCGT-ATCCAGCAGCTCATTAAAT
39988540 TC-TATCCAG
1 TCGTATCCAG
39988549 GCATGCTGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 5 0.18
22 1 0.04
23 6 0.21
24 16 0.57
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (23 bp):
TCGTATCCAGCAGCTCATTAAAT
Found at i:39988634 original size:17 final size:18
Alignment explanation
Indices: 39988614--39988648 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
39988604 TGTACACACA
39988614 AATTAATTCAG-CACATT
1 AATTAATTCAGACACATT
*
39988631 AATTAATTTAGACACATT
1 AATTAATTCAGACACATT
39988649 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (18 bp):
AATTAATTCAGACACATT
Found at i:39988914 original size:9 final size:9
Alignment explanation
Indices: 39988900--39988924 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
39988890 TAATTGTTAA
39988900 AACTAATTT
1 AACTAATTT
39988909 AACTAATTT
1 AACTAATTT
39988918 AACTAAT
1 AACTAAT
39988925 CAACAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (9 bp):
AACTAATTT
Found at i:39990795 original size:21 final size:19
Alignment explanation
Indices: 39990760--39990800 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
39990750 AAAAAAAATG
39990760 AATTTTTTTTGTTGTAATTT
1 AATTTTTTTTGTTGT-ATTT
*
39990780 AATTTTTTTTCTTTGTATTT
1 AATTTTTTTT-GTTGTATTT
39990800 A
1 A
39990801 GCTTACTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (19 bp):
AATTTTTTTTGTTGTATTT
Found at i:39990856 original size:10 final size:11
Alignment explanation
Indices: 39990834--39990858 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
39990824 AAAAAAATTG
39990834 AAATTCAAAAA
1 AAATTCAAAAA
39990845 AAATTCAAAAA
1 AAATTCAAAAA
39990856 AAA
1 AAA
39990859 AGTGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATTCAAAAA
Found at i:39990882 original size:28 final size:28
Alignment explanation
Indices: 39990851--39990926 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
39990841 AAAAAAATTC
*
39990851 AAAAAAAAAGTGAAAAAAA-TCGAGCAAA
1 AAAAAAAAAGTAAAAAAAAGT-GAGCAAA
39990879 AAAAAAGAAAG-AAAAAAAAGTGAGCAAA
1 AAAAAA-AAAGTAAAAAAAAGTGAGCAAA
**
39990907 AAAAATCAAGTTAAAAAAAA
1 AAAAAAAAAG-TAAAAAAAA
39990927 AAGTGAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
27 3 0.07
28 25 0.61
29 13 0.32
ACGTcount: A:0.74, C:0.05, G:0.13, T:0.08
Consensus pattern (28 bp):
AAAAAAAAAGTAAAAAAAAGTGAGCAAA
Found at i:39993129 original size:10 final size:10
Alignment explanation
Indices: 39993114--39993151 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
39993104 TTAGGTTAAG
39993114 ATTGAGCTGA
1 ATTGAGCTGA
39993124 ATTGAGCTCGA
1 ATTGAGCT-GA
39993135 A-TGAGCTGA
1 ATTGAGCTGA
*
39993144 CTTGAGCT
1 ATTGAGCT
39993152 CGAGTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.80
11 3 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:39993139 original size:20 final size:20
Alignment explanation
Indices: 39993116--39993162 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
39993106 AGGTTAAGAT
39993116 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
39993136 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
39993156 TGAGCTG
1 TGAGCTG
39993163 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:39994694 original size:12 final size:12
Alignment explanation
Indices: 39994677--39994701 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
39994667 TTTCACTCTT
39994677 CTCTTTTTCAAA
1 CTCTTTTTCAAA
39994689 CTCTTTTTCAAA
1 CTCTTTTTCAAA
39994701 C
1 C
39994702 CCTCTCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:39995728 original size:31 final size:29
Alignment explanation
Indices: 39995670--39995732 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
39995660 TTAAACTTGA
*
39995670 TTTTTTTGCTCACCTTTTTTTTTCTTTTCTT
1 TTTTTTTGCTCA-CTTTTTTTTACTTTT-TT
39995701 TTTTTTTGCTCGA-TTTTTTTTCACTTTTTT
1 TTTTTTTGCTC-ACTTTTTTTT-ACTTTTTT
39995731 TT
1 TT
39995733 GAATTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 12 0.41
31 16 0.55
32 1 0.03
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.75
Consensus pattern (29 bp):
TTTTTTTGCTCACTTTTTTTTACTTTTTT
Found at i:39997255 original size:10 final size:10
Alignment explanation
Indices: 39997240--39997277 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
39997230 TTAGGTTAAG
39997240 ATTGAGCTGA
1 ATTGAGCTGA
39997250 ATTGAGCTCGA
1 ATTGAGCT-GA
39997261 A-TGAGCTGA
1 ATTGAGCTGA
*
39997270 CTTGAGCT
1 ATTGAGCT
39997278 CGAGTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.80
11 3 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:39997265 original size:20 final size:20
Alignment explanation
Indices: 39997242--39997288 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
39997232 AGGTTAAGAT
39997242 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
39997262 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
39997282 TGAGCTG
1 TGAGCTG
39997289 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:39997560 original size:12 final size:12
Alignment explanation
Indices: 39997539--39997730 Score: 58
Period size: 12 Copynumber: 15.7 Consensus size: 12
39997529 AGAAAAGGAG
*
39997539 AAAGAGATTGAA
1 AAAGAAATTGAA
39997551 AAAGAAATTG--
1 AAAGAAATTGAA
**
39997561 AAAGAAA-ACAA
1 AAAGAAATTGAA
*
39997572 AAAGAAAATGAA
1 AAAGAAATTGAA
**
39997584 AAAGAAAAAGAA
1 AAAGAAATTGAA
** *
39997596 ATTGCAAA-AG-A
1 AAAG-AAATTGAA
*
39997607 AAAGAAATCGAA
1 AAAGAAATTGAA
* *
39997619 AAGTGAGA--GAA
1 AA-AGAAATTGAA
*
39997630 AAAGAAAATGAAGA
1 AAAGAAATTG-A-A
39997644 AAAGAAAATTGAA
1 AAAG-AAATTGAA
39997657 AAAGAAATTGAGAA
1 AAAGAAATT--GAA
*
39997671 TGAAAAAAATTGAA
1 --AAAGAAATTGAA
**
39997685 AAAGAAAAAGCGAAA
1 AAAG--AAATTG-AA
39997700 AAAGAAATTGAA
1 AAAGAAATTGAA
**
39997712 AAAGAGCTTG-A
1 AAAGAAATTGAA
39997723 AAAGAAAT
1 AAAGAAAT
39997731 CAAGTGAAAA
Statistics
Matches: 135, Mismatches: 26, Indels: 39
0.68 0.13 0.19
Matches are distributed among these distances:
10 13 0.10
11 23 0.17
12 48 0.36
13 16 0.12
14 16 0.12
15 11 0.08
16 8 0.06
ACGTcount: A:0.67, C:0.03, G:0.19, T:0.11
Consensus pattern (12 bp):
AAAGAAATTGAA
Found at i:39997659 original size:28 final size:27
Alignment explanation
Indices: 39997627--39997716 Score: 96
Period size: 27 Copynumber: 3.3 Consensus size: 27
39997617 AAAAGTGAGA
39997627 GAAAAAGAAAATGAAGAAAAGAAAATT
1 GAAAAAGAAAATGAAGAAAAGAAAATT
* *
39997654 GAAAAAGAAATTG-AGAATGAAAAAAATT
1 GAAAAAGAAAATGAAGAA--AAGAAAATT
*
39997682 GAAAAAGAAAAAGCGAA-AAAAG-AAATT
1 GAAAAAG-AAAA-TGAAGAAAAGAAAATT
39997709 GAAAAAGA
1 GAAAAAGA
39997717 GCTTGAAAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
26 5 0.09
27 24 0.45
28 17 0.32
29 3 0.06
30 3 0.06
31 1 0.02
ACGTcount: A:0.69, C:0.01, G:0.19, T:0.11
Consensus pattern (27 bp):
GAAAAAGAAAATGAAGAAAAGAAAATT
Found at i:39999821 original size:10 final size:11
Alignment explanation
Indices: 39999800--39999838 Score: 60
Period size: 11 Copynumber: 3.4 Consensus size: 11
39999790 AAAAAAAAAA
39999800 TTTTGAATTTT
1 TTTTGAATTTT
39999811 TTTTGAATTTTTT
1 TTTTGAA--TTTT
39999824 TTTTGAATTTT
1 TTTTGAATTTT
39999835 TTTT
1 TTTT
39999839 TTCAAATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 15 0.58
13 11 0.42
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTGAATTTT
Found at i:39999847 original size:14 final size:13
Alignment explanation
Indices: 39999807--39999840 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
39999797 AAATTTTGAA
39999807 TTTTTTTTGAATT
1 TTTTTTTTGAATT
39999820 TTTTTTTTGAATT
1 TTTTTTTTGAATT
39999833 TTTTTTTT
1 TTTTTTTT
39999841 CAAATTTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (13 bp):
TTTTTTTTGAATT
Found at i:40008351 original size:12 final size:12
Alignment explanation
Indices: 40008334--40008366 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
40008324 ACTGTATGCA
40008334 TTTTTTTTCAAT
1 TTTTTTTTCAAT
40008346 TTTTTTTTCAAT
1 TTTTTTTTCAAT
40008358 TTTTTTTTC
1 TTTTTTTTC
40008367 GAACTCCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:40008706 original size:21 final size:21
Alignment explanation
Indices: 40008680--40008742 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
40008670 TTGGTATTTG
40008680 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
40008701 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
40008722 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
40008743 ACGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:40012528 original size:27 final size:26
Alignment explanation
Indices: 40012480--40012538 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
40012470 AGCAGCAACT
*
40012480 ATTAAATTTGTCCCTAAGCTAGACAC
1 ATTAAATTTGTCCCTAAACTAGACAC
40012506 ATTAAATTGATGT-CCTAAACTAGACAC
1 ATTAAATT--TGTCCCTAAACTAGACAC
40012533 ATTAAA
1 ATTAAA
40012539 ACTATGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 8 0.27
27 19 0.63
28 3 0.10
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
ATTAAATTTGTCCCTAAACTAGACAC
Found at i:40024451 original size:14 final size:14
Alignment explanation
Indices: 40024415--40024449 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
40024405 CATAAATCAC
40024415 TTTTTTTTCAGAAT
1 TTTTTTTTCAGAAT
40024429 TTTTTTTTC-GAAT
1 TTTTTTTTCAGAAT
40024442 TTTTTTTT
1 TTTTTTTT
40024450 TCAAACTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (14 bp):
TTTTTTTTCAGAAT
Done.