Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 131 of 320
Found at i:42977887 original size:60 final size:60
Alignment explanation
Indices: 42977794--42977912 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
42977784 CCTATCACAT
*
42977794 TAACTCAATCATCAAGCTAGTCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
1 TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
*
42977854 TAACTCAATCATCAAGTTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
1 TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGC
42977913 TCATCAATTC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (60 bp):
TAACTCAATCATCAAGCTAATCTCATATCAATACATCATGTCATTAGTCTTAGATGAGCA
Found at i:42982813 original size:47 final size:47
Alignment explanation
Indices: 42982750--42982916 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 47
42982740 TGCGAATGTT
42982750 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
* * *
42982797 CGAACTCATTGAGTTGAGTCCGAGTTCACTTGTG-GATGCGAAC---GC--C
1 CGAACTCGTTGAGTTGAGTCCGAGTT--C--GTGAAATG-TAACTAGGCATC
* *
42982843 CGAGCTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
42982890 CGAACTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC
42982917 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
42 6 0.06
43 3 0.03
44 1 0.01
45 2 0.02
46 24 0.24
47 51 0.52
48 2 0.02
49 1 0.01
50 3 0.03
51 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATC
Found at i:42982858 original size:93 final size:92
Alignment explanation
Indices: 42982699--42982962 Score: 420
Period size: 93 Copynumber: 2.8 Consensus size: 92
42982689 GGATGGTTGA
* * ** *
42982699 GCATCCGAACTCGTGCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCTTG-AGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
42982764 TGAGTCCGAGTTCGTGAAATGTAACTAG
65 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
42982792 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTC-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
42982857 TGAGTCCGAGTTCGTGAAATGTAACTAG
65 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
42982885 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTC-TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
42982950 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
42982963 ACTTAGGGGC
Statistics
Matches: 158, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
93 156 0.99
94 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:42982967 original size:46 final size:46
Alignment explanation
Indices: 42982715--42982967 Score: 194
Period size: 46 Copynumber: 5.5 Consensus size: 46
42982705 GAACTCGTGC
* * ** *
42982715 AGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTG
* * * * * * *
42982761 AGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCGAACTCATTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC--CCGAGCTCGTTG
* * *
42982808 AGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTG
* * * * * *
42982854 AGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCGAACTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC--CCGAGCTCGTTG
*
42982901 AGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAGCTCGTTG
1 AGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTG
42982947 AGTTGAGTCCGAGTTCACTTA
1 AGTTGAGTCCGAGTTCACTTA
42982968 GGGGCGGGTT
Statistics
Matches: 158, Mismatches: 35, Indels: 28
0.71 0.16 0.13
Matches are distributed among these distances:
43 8 0.05
45 8 0.05
46 72 0.46
47 52 0.33
48 9 0.06
50 9 0.06
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
AGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTG
Found at i:42990416 original size:46 final size:45
Alignment explanation
Indices: 42990366--42990631 Score: 213
Period size: 46 Copynumber: 5.8 Consensus size: 45
42990356 TGGTTGAGCA
*
42990366 TCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
42990412 TCCGAACTCGTTGAGTTGAGTCGGAG-T---TTGTGAAATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--G
*
42990457 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * * * *
42990505 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
42990550 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
42990598 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
42990632 GAGGCGGGTT
Statistics
Matches: 172, Mismatches: 28, Indels: 40
0.72 0.12 0.17
Matches are distributed among these distances:
42 8 0.05
43 7 0.04
45 5 0.03
46 82 0.48
47 51 0.30
48 5 0.03
50 6 0.03
51 8 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:42990522 original size:93 final size:93
Alignment explanation
Indices: 42990363--42990626 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
42990353 GGATGGTTGA
* * * *
42990363 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
* *
42990428 TGAGTCGGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
42990456 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
42990521 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
42990549 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
42990614 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42990627 ACTTAGAGGC
Statistics
Matches: 162, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 162 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:42990580 original size:47 final size:47
Alignment explanation
Indices: 42990412--42990580 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
42990402 GATGCGAATG
* *
42990412 TCCGAACTCGTTGAGTTGAGTCGGAGTTTGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * *
42990459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---GC-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGGCA
*
42990506 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
42990552 TCCGAACTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
42990581 ACTTATGGAT
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 4 0.04
46 27 0.26
47 53 0.52
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:42995609 original size:46 final size:45
Alignment explanation
Indices: 42995542--42995717 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 45
42995532 TATTTGGGCA
42995542 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTATGGATGCGAATG
* *
42995588 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAA-T--G
*
42995633 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGCGAATG
* *
42995681 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGG
42995718 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 7, Indels: 24
0.78 0.05 0.17
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
45 1 0.01
46 61 0.55
47 29 0.26
48 1 0.01
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
Found at i:42995697 original size:93 final size:93
Alignment explanation
Indices: 42995538--42995709 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
42995528 AGGATATTTG
* *
42995538 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
42995603 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
42995631 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTGATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCT-ATGGATGCGAACGCCCGAACTCGTTGA
42995695 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
42995710 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:42998659 original size:15 final size:15
Alignment explanation
Indices: 42998639--42998707 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
42998629 GTATCTTGGG
42998639 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
42998654 TCTCTTTATTCTAGA
1 TTTCTTTATCCTGGA
* *
42998669 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
42998684 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
42998699 TTTCTTTAT
1 TTTCTTTAT
42998708 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.13, C:0.17, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:42998701 original size:30 final size:30
Alignment explanation
Indices: 42998630--42998726 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
42998620 CATAGTATCG
* * * *
42998630 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
42998660 TAT-TCTAGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
42998690 TATCTTGGATTTCTTTATTC-GGTTTTCTTGC
1 TATCTTGGATTTCTTTATTCTGGATTTC-T-C
42998721 TATCTT
1 TATCTT
42998727 TGTTCCATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
29 7 0.13
30 40 0.73
31 8 0.15
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:42998718 original size:14 final size:14
Alignment explanation
Indices: 42998639--42998718 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
42998629 GTATCTTGGG
*
42998639 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
42998654 TCTCTTTATTCTAGA
1 TTTCTTTATTC-GGA
*
42998669 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
42998684 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
42998699 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
42998713 TTTCTT
1 TTTCTT
42998719 GCTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:43000703 original size:46 final size:45
Alignment explanation
Indices: 43000636--43000811 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 45
43000626 TATTTGGGCA
43000636 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATG-GAATG
* *
43000682 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGGAA-T--G
* *
43000727 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATG-GAATG
* * *
43000775 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGG
43000812 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.05
45 1 0.01
46 63 0.57
47 28 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGGAATG
Found at i:43000791 original size:93 final size:93
Alignment explanation
Indices: 43000632--43000803 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
43000622 AGGATATTTG
* *
43000632 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
43000697 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
43000725 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGATCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
43000790 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
43000804 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:43003686 original size:40 final size:40
Alignment explanation
Indices: 43003642--43003904 Score: 305
Period size: 40 Copynumber: 6.7 Consensus size: 40
43003632 GCTCCTCGTT
* *
43003642 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* *
43003682 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* *
43003722 CAAATGCCTTTGGGACTTAACCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43003762 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43003801 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
43003840 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
43003881 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43003905 CAGCATTCAA
Statistics
Matches: 206, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 92 0.45
40 102 0.50
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:43003859 original size:79 final size:80
Alignment explanation
Indices: 43003642--43003904 Score: 303
Period size: 79 Copynumber: 3.3 Consensus size: 80
43003632 GCTCCTCGTT
* * *
43003642 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACATAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGACTTAGCCC
*
43003705 GG-TTATAGTAAT-TCGCA
63 GGAAT-TAGTAATCTCGCA
* * *
43003722 CAAATGCCTTTGGGACTTAACCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
43003787 ATTAGT-ATCTCGCA
66 ATTAGTAATCTCGCA
*
43003801 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGG
* *
43003865 ATATT-GTCA-CTTAGCA
65 A-ATTAGTAATC-TCGCA
43003881 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43003905 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 12, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
78 48 0.30
79 61 0.38
80 52 0.32
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
ATTAGTAATCTCGCA
Found at i:43006976 original size:15 final size:15
Alignment explanation
Indices: 43006956--43007024 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
43006946 GTATCTTGGG
43006956 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
43006971 TCTCTTTATTCTAGA
1 TTTCTTTATCCTGGA
* *
43006986 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
43007001 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
43007016 TTTCTTTAT
1 TTTCTTTAT
43007025 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.13, C:0.17, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:43007018 original size:30 final size:30
Alignment explanation
Indices: 43006947--43007043 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
43006937 CATAGTATCG
* * * *
43006947 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
43006977 TAT-TCTAGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
43007007 TATCTTGGATTTCTTTATTC-GGTTTTCTTGC
1 TATCTTGGATTTCTTTATTCTGGATTTC-T-C
43007038 TATCTT
1 TATCTT
43007044 TGTTCCATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
29 7 0.13
30 40 0.73
31 8 0.15
ACGTcount: A:0.11, C:0.18, G:0.14, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:43007035 original size:14 final size:14
Alignment explanation
Indices: 43006956--43007035 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
43006946 GTATCTTGGG
*
43006956 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
43006971 TCTCTTTATTCTAGA
1 TTTCTTTATTC-GGA
*
43006986 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
43007001 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
43007016 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
43007030 TTTCTT
1 TTTCTT
43007036 GCTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:43009020 original size:46 final size:45
Alignment explanation
Indices: 43008953--43009122 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
43008943 TATTTGGGCA
43008953 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTA-GGATGCGAATG
* *
43008999 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTAG-GATGCGAA-T--G
* * *
43009044 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTA-GGATGCGAATG
* * * *
43009092 CCCGATCTTGTTGAGTTGAGTCTGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
43009123 TTATGGGCGG
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 1 0.01
46 54 0.53
47 27 0.26
48 1 0.01
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTAGGATGCGAATG
Found at i:43009108 original size:93 final size:93
Alignment explanation
Indices: 43008949--43009120 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
43008939 AGGATATTTG
* *
43008949 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCGTTGAG
43009014 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
43009042 GGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGATCTTGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCGTTGAG
*
43009107 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
43009121 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTACGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:43011736 original size:139 final size:146
Alignment explanation
Indices: 43011469--43011741 Score: 364
Period size: 139 Copynumber: 1.9 Consensus size: 146
43011459 GGATAAGTTA
* * *
43011469 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGAAGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
* * *
43011534 AACATGGTCTTACACTAGCTCTCATATATATACGTGCTAATGCCATGTCCCAGACATCATCTTAT
66 AACATGGTCTTACACTAGCACTCATATATATAC-TGCCAATGCCATGTCCCAGACATCATCTTAC
43011599 ACTAGCACAACTCTCAG
130 ACTAGCACAACTCTCAG
* *
43011616 CCGATG-CATGTCCCAGACAT-TTCTTACACTGGCTATCATCACCGAGGCCAATG-CATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
* * **
43011678 AACAT-GTCTTACACTAGCACTCGT-T-TCA-A-TGCCGATGCCATGTCCCAGACATGGTCTTAC
66 AACATGGTCTTACACTAGCACTCATATAT-ATACTGCCAATGCCATGTCCCAGACATCATCTTAC
43011738 ACTA
130 ACTA
43011742 TCTCTCGTAA
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
139 30 0.27
141 2 0.02
142 2 0.02
143 17 0.15
144 14 0.12
145 28 0.25
146 14 0.12
147 6 0.05
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (146 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCACCGAAGCCAATGCCATGTCCCA
AACATGGTCTTACACTAGCACTCATATATATACTGCCAATGCCATGTCCCAGACATCATCTTACA
CTAGCACAACTCTCAG
Found at i:43011764 original size:94 final size:96
Alignment explanation
Indices: 43011472--43011791 Score: 302
Period size: 94 Copynumber: 3.4 Consensus size: 96
43011462 TAAGTTACCG
* * *
43011472 ATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATCGAAGCCGATGCCATGTCCCAAA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGC-ACTCGT-ATC-AAGCCGATGCCATGTCCCAGA
* *
43011536 CATGGTCTTACACTAGCTCTCATATATATACGTGCTA
63 CATGGTCTTACACTAGCTCTCATACATAT--G-GCCA
* * * *
43011573 ATGCCATGTCCCAGACATCATCTTATACTAGCACAAC-TCTC-AGCCGATG-CATGTCCCAGACA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCAC-TCGTATCAAGCCGATGCCATGTCCCAGACA
* * * **
43011635 T-TTCTTACACTGGCTATCATCACCGA-GGCCA
65 TGGTCTTACACTAGCTCTCAT-ACATATGGCCA
* *
43011666 ATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTTTCAATGCCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCACTCGTATCAA-GCCGATGCCATGTCCCAGACA
* * *
43011729 TGGTCTTACACTATCTCTCGTA-ATATGGCCG
65 TGGTCTTACACTAGCTCTCATACATATGGCCA
*
43011760 ATG-CATGTCGCAGACAT-GTCTTACACTAGCAC
1 ATGCCATGTCCCAGACATCGTCTTACACTAGCAC
43011792 ACACATAACC
Statistics
Matches: 181, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
90 1 0.01
91 16 0.09
92 14 0.08
93 14 0.08
94 50 0.28
95 14 0.08
96 16 0.09
97 15 0.08
98 8 0.04
100 3 0.02
101 29 0.16
102 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATCGTCTTACACTAGCACTCGTATCAAGCCGATGCCATGTCCCAGACAT
GGTCTTACACTAGCTCTCATACATATGGCCA
Found at i:43011767 original size:47 final size:47
Alignment explanation
Indices: 43011469--43011789 Score: 196
Period size: 47 Copynumber: 6.7 Consensus size: 47
43011459 GGATAAGTTA
* * * *
43011469 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATCGA-AG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAAT--ATGG
* *
43011518 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATATACGTG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTA-ATAT--G-G
** * * * * *
43011570 CTAATGCCATGTCCCAGACATCATCTTATACTAG--CAC--AACTCTCAG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAA-TAT-GG
* * * * **
43011616 CCGATG-CATGTCCCAGACATTTCTTACACTGGCTATCATCACCGA-GG
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGT-A-ATATGG
* * * *
43011663 CCAATG-CATGTCCCAAACATGTCTTACACTAGCACTCGT-TTCAAT-G
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTAAT--ATGG
*
43011709 CCGATGCCATGTCCCAGACATGGTCTTACACTATCTCTCGTAATATGG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAATATGG
*
43011757 CCGATG-CATGTCGCAGACATGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGC
43011790 ACACACATAA
Statistics
Matches: 211, Mismatches: 42, Indels: 41
0.72 0.14 0.14
Matches are distributed among these distances:
44 9 0.04
45 14 0.07
46 25 0.12
47 63 0.30
48 28 0.13
49 39 0.18
50 4 0.02
52 29 0.14
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCGTAATATGG
Found at i:43019175 original size:52 final size:49
Alignment explanation
Indices: 43019050--43019368 Score: 227
Period size: 47 Copynumber: 6.7 Consensus size: 49
43019040 ATAAGTTGCC
*
43019050 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTCATTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* *
43019099 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGT-ATATATACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-T-GA-G-GCT
* * ** * * *
43019151 GATGCCATGTCCCAGACATCGTCTTATACTAGC-A-CAAC-TCTCA-ACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCAT-TGAGGCT
* * * * * *
43019197 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTATCATTATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
* * * * *
43019244 GATG-CATGTGCCAAACAT-GTCTTACAATAGC-ACTCGTC-TTAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTCATTGAGGCT
* * * * *
43019290 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAG--AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-GTCATTGAGGCT
*
43019338 GATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
43019369 ACACAAATAA
Statistics
Matches: 214, Mismatches: 41, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
44 11 0.05
45 14 0.07
46 29 0.14
47 59 0.28
48 22 0.10
49 40 0.19
50 4 0.02
51 1 0.00
52 34 0.16
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCATTGAGGCT
Found at i:43019309 original size:94 final size:95
Alignment explanation
Indices: 43019047--43019370 Score: 317
Period size: 94 Copynumber: 3.4 Consensus size: 95
43019037 GGGATAAGTT
* * * *
43019047 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCGTCATTGAGGCTGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGC-ACTCGTC-TT-AAGCTGATGCCATGTCC
* *
43019111 CAGACATGGTCTTACACTAGCTCTCGTATATATACGT
63 CAGACATGGTCTTACACTGGCTCTC--AT-TAT-CGG
* * * * * *
43019148 GCTGATGCCATGTCCCAGACATCGTCTTATACTAGCACAAC-TCTCAA-CCGATG-CATGTCCCA
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC-TCGTCTTAAGCTGATGCCATGTCCCA
* *
43019210 AACAT-GTCTTACACTGGCTATCATTATCGAG
65 GACATGGTCTTACACTGGCTCTCATTATCG-G
* *
43019241 GCCGATG-CATGTGCCAAACAT-GTCTTACAATAGCACTCGTCTTAATGCTGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAA-GCTGATGCCATGTCCCA
**
43019304 GACATGGTCTTACACTGGCTCTCAGAAT-GTG
65 GACATGGTCTTACACTGGCTCTCATTATCG-G
43019335 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCAC
1 GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCAC
43019371 ACAAATAACT
Statistics
Matches: 188, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
90 1 0.01
91 18 0.10
92 14 0.07
93 14 0.07
94 51 0.27
95 19 0.10
96 15 0.08
97 13 0.07
98 5 0.03
99 1 0.01
100 2 0.01
101 34 0.18
102 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAAACATCGTCTTACACTAGCACTCGTCTTAAGCTGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCATTATCGG
Found at i:43020614 original size:6 final size:6
Alignment explanation
Indices: 43020605--43020683 Score: 72
Period size: 6 Copynumber: 12.8 Consensus size: 6
43020595 TATTAGAACT
* *
43020605 AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
43020654 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
43020684 GTGAATGCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:43020641 original size:31 final size:31
Alignment explanation
Indices: 43020605--43020683 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
43020595 TATTAGAACT
* *
43020605 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
43020636 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
43020667 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
43020684 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:43021107 original size:27 final size:27
Alignment explanation
Indices: 43021077--43021154 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
43021067 AGGGGCAAAA
*
43021077 TGGTAATTTTACAAACCAGGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
**
43021104 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTTTACAAACCAAGGGTATTT
** ** *
43021131 CAGTAATTTTGTAAATCAAGGGTA
1 TGGTAATTTTACAAACCAAGGGTA
43021155 AAATGGTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
TGGTAATTTTACAAACCAAGGGTATTT
Found at i:43021162 original size:54 final size:54
Alignment explanation
Indices: 43021133--43021300 Score: 273
Period size: 54 Copynumber: 3.1 Consensus size: 54
43021123 GGGTATTTCA
* * * *
43021133 GTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
* *
43021187 GTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
*
43021241 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
43021295 GTAATT
1 GTAATT
43021301 CTATCTTATT
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 105 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATG
Found at i:43021163 original size:27 final size:27
Alignment explanation
Indices: 43021133--43021304 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
43021123 GGGTATTTCA
* *
43021133 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* *
43021160 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * * *
43021187 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTATAAATCAAGGGTAAAATG
43021214 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
* * *
43021241 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCAAGGGTAAAATG
43021268 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
43021295 GTAATTCTAT
1 GTAATTCTAT
43021305 CTTATTTCGG
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAATG
Found at i:43021198 original size:81 final size:81
Alignment explanation
Indices: 43021104--43021304 Score: 258
Period size: 81 Copynumber: 2.5 Consensus size: 81
43021094 AGGGGTATTT
* * *** * *
43021104 TGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCAAGGGTAAAATGGTAATTCTA
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
43021169 TAAATCGAGAGTAAAA
66 TAAATCGAGAGTAAAA
* * *
43021185 TGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCAAGGGTAAAATGGTAATTTTA
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
*
43021250 TAAATCGAGGGTAAAA
66 TAAATCGAGAGTAAAA
* * * **
43021266 CGGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTAT
1 TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTAT
43021305 CTTATTTCGG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCAAGGGTAAGACAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTA
TAAATCGAGAGTAAAA
Found at i:43021337 original size:27 final size:27
Alignment explanation
Indices: 43021307--43021401 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
43021297 AATTCTATCT
*
43021307 TATTTCGGTAATTTTACAAATCGAGGA
1 TATTTCGGTAATTTTACAAATCGAGGG
* * *
43021334 TATTTGGGTAATTTTATAAATCGGGGG
1 TATTTCGGTAATTTTACAAATCGAGGG
*
43021361 TACTTT-GGTAATTTTACAAGTCGAGGG
1 TA-TTTCGGTAATTTTACAAATCGAGGG
*
43021388 TATTTCAGTAATTT
1 TATTTCGGTAATTT
43021402 GGTAAACTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.05
27 52 0.90
28 3 0.05
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAATCGAGGG
Found at i:43023683 original size:12 final size:13
Alignment explanation
Indices: 43023666--43023703 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
43023656 ATCTTAGAAT
43023666 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
43023678 ATTAAGAACACATA
1 ATTAAGAACA-AGA
43023692 ATTAAGAACAAG
1 ATTAAGAACAAG
43023704 TCAAATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:43031376 original size:30 final size:30
Alignment explanation
Indices: 43031340--43031401 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
43031330 AATCAGAAGT
43031340 TTTGGCACTAACTGTGTGATTTAAACTAGC
1 TTTGGCACTAACTGTGTGATTTAAACTAGC
*
43031370 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAACTGTGTGATTTAAACTAGC
43031400 TT
1 TT
43031402 CGACTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (30 bp):
TTTGGCACTAACTGTGTGATTTAAACTAGC
Found at i:43034118 original size:48 final size:48
Alignment explanation
Indices: 43034037--43034132 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
43034027 CCGGAATGCC
* * *
43034037 GGTCACATGGTGATGGCAGCCACACTAGAGTGCGAGCGCACGTGTGGG
1 GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
* * * *
43034085 GGTCACACGGTGATGGTAGCCATACGAGCGTGCGAGCGTACATGTGGG
1 GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
43034133 AGCTTTGACG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.40, T:0.18
Consensus pattern (48 bp):
GGTCACACGGTGATGGCAGCCACACGAGAGTGCGAGCGCACATGTGGG
Found at i:43034377 original size:26 final size:27
Alignment explanation
Indices: 43034339--43034408 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 27
43034329 TGTAGGGTAG
*
43034339 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGGTTCACAA
43034366 AATTACTG-AATACCCTTGGTTCACAA
1 AATTACTGAAATACCCTTGGTTCACAA
**
43034392 AATTACCAAAATACCCT
1 AATTACTGAAATACCCT
43034409 CGATTAGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGGTTCACAA
Found at i:43034723 original size:27 final size:27
Alignment explanation
Indices: 43034339--43034713 Score: 222
Period size: 27 Copynumber: 13.9 Consensus size: 27
43034329 TGTAGGGTAG
* *
43034339 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **
43034366 AATTACTG-AATACCCTTGGTTCACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * * *
43034392 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* *
43034419 AATTACC-AAA-ACACCTCTAGTTTGGAA
1 AATTACCGAAATAC-CCT-TGGTTTGCAA
* * * **
43034446 AATTACCAAAAGACCCCTGGTTTGTGA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **** *
43034473 AATTACCGAAATACCATCAACTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
** * ** *
43034500 AATTATTGAAATACCCTCGACTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * *
43034527 AATTATCGAAATACCCTTGATTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * **
43034554 AATTACCAAAATACCCCTAATTTAG-AA
1 AATTACCGAAATACCCTTGGTTT-GCAA
* *
43034581 AATTACCGAAATACCCTTGATTTGGAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * ** *
43034608 AATTA-TGAAAATACCCCTAATTTACAA
1 AATTACCG-AAATACCCTTGGTTTGCAA
** *
43034635 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACCGAAATACCCTTG-GTTTGC-AA
** *
43034663 AATTATAGAAATACCATTGGTTTGCAA
1 AATTACCGAAATACCCTTGGTTTGCAA
43034690 AATTACCGAAATACCCTTGGTTTG
1 AATTACCGAAATACCCTTGGTTTG
43034714 TAGATTTACC
Statistics
Matches: 280, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 31 0.11
27 217 0.77
28 28 0.10
29 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTGCAA
Found at i:43035237 original size:22 final size:22
Alignment explanation
Indices: 43035196--43035260 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
43035186 GCCAATTATT
* * *
43035196 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGATCTGTGCCAAC
43035218 CT-ACTTATGGATCTGTGCCAAC
1 CTGA-TTATGGATCTGTGCCAAC
* *
43035240 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGATCTGTGCCAA
43035261 ACGCGTTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGATCTGTGCCAAC
Found at i:43035489 original size:22 final size:22
Alignment explanation
Indices: 43035464--43035507 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
43035454 TTGCTGCGAG
*
43035464 GTTTACGGCTATGTGCTGTCCT
1 GTTTACGGCTATGTGATGTCCT
*
43035486 GTTTATGGCTATGTGATGTCCT
1 GTTTACGGCTATGTGATGTCCT
43035508 ATCTACGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.11, C:0.18, G:0.27, T:0.43
Consensus pattern (22 bp):
GTTTACGGCTATGTGATGTCCT
Found at i:43035695 original size:27 final size:27
Alignment explanation
Indices: 43035665--43035770 Score: 72
Period size: 27 Copynumber: 3.7 Consensus size: 27
43035655 GCAACTGATA
*
43035665 CTGATTCT-ATATTGGGCTTAGGCCCAC
1 CTGATTCTGATAATGGGC-TAGGCCCAC
*
43035692 CTGATTCTGTTAATGGGCTAGGCCCAAC
1 CTGATTCTGATAATGGGCTAGGCCC-AC
* * *
43035720 TGTTACTGATTCTGAGAATGGCCTAGGCCCAA
1 -----CTGATTCTGATAATGGGCTAGGCCCAC
* *
43035752 TTGATTCTGATGA-GGGCTA
1 CTGATTCTGATAATGGGCTA
43035771 AGACCCAAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
26 5 0.08
27 25 0.40
28 9 0.15
32 1 0.02
33 22 0.35
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (27 bp):
CTGATTCTGATAATGGGCTAGGCCCAC
Found at i:43035778 original size:60 final size:60
Alignment explanation
Indices: 43035656--43035778 Score: 133
Period size: 60 Copynumber: 2.0 Consensus size: 60
43035646 TGCATATCTG
* * * * * *
43035656 CAACTGATACTGATTCTATATTGGGCTTAGGCCCACCTGATTCTGTTAATGGGCTAGGCC
1 CAACTGATACTGATTCTAGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCTAGACC
* * *
43035716 CAACTGTTACTGATTCTGAGAAT-GGCCTAGGCCCAATTGATTCTGATGA-GGGCTAAGACC
1 CAACTGATACTGATTCT-AGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCT-AGACC
43035776 CAA
1 CAA
43035779 GTGAAATTGT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
59 5 0.10
60 44 0.85
61 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (60 bp):
CAACTGATACTGATTCTAGAATGGGCCTAGGCCCAACTGATTCTGATAATGGGCTAGACC
Found at i:43038292 original size:17 final size:18
Alignment explanation
Indices: 43038260--43038295 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
43038250 ATGGCCCGGG
*
43038260 ATGGGCCATGTGGGCCCA
1 ATGGGCCATATGGGCCCA
43038278 ATGGGCC-TATGGGCCCA
1 ATGGGCCATATGGGCCCA
43038295 A
1 A
43038296 GTGGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (18 bp):
ATGGGCCATATGGGCCCA
Found at i:43038385 original size:27 final size:26
Alignment explanation
Indices: 43038355--43038435 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
43038345 ATCTCATATT
* *
43038355 TGTAGGCTAGTATTACTGAAATAACCC
1 TGTAGGATAGAATTACTGAAAT-ACCC
* * *
43038382 TGTAGAATAGAATTACTGAAATGCCTT
1 TGTAGGATAGAATTACTGAAATACC-C
*
43038409 TGTAGGGTAGAATTACTGAAATACCC
1 TGTAGGATAGAATTACTGAAATACCC
43038435 T
1 T
43038436 TGGTTTATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (26 bp):
TGTAGGATAGAATTACTGAAATACCC
Found at i:43038449 original size:27 final size:27
Alignment explanation
Indices: 43038419--43038814 Score: 252
Period size: 27 Copynumber: 14.7 Consensus size: 27
43038409 TGTAGGGTAG
* * *
43038419 AATTACTGAAATACCCTTGGTTTATAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * * *
43038446 AATTACCAAAATACCCTCGATTAGCAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
43038473 AATTGCCAAAATACCCCT-AGTTTGTAA
1 AATTACTAAAATACCCTTGA-TTTGTAA
* * * *
43038500 AATTACCAAAATACCC-TGGTTTTTTA
1 AATTACTAAAATACCCTTGATTTGTAA
* *
43038526 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACTAAAATACCCTTGATTTGTAA
* **
43038553 AATTA-TCAAAATACCCTCGACCTGTAA
1 AATTACT-AAAATACCCTTGATTTGTAA
* * * * *
43038580 AATTACCAAAATACCATCGACTTATAA
1 AATTACTAAAATACCCTTGATTTGTAA
*
43038607 AATTACTGAAATACCCTTGATTTGTAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
43038634 AATTACCAAAATACCCCTGATTTGGAA
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
43038661 AATTA-TCGAAATACCTTTGATTTGGAA
1 AATTACT-AAAATACCCTTGATTTGTAA
* * * **
43038688 AAATAC-AGAAATACCCCTAATTTACAA
1 AATTACTA-AAATACCCTTGATTTGTAA
43038715 AATTA-TAGAAATACCCTTGACTTT-TAAA
1 AATTACTA-AAATACCCTTGA-TTTGT-AA
* * *
43038743 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACTA-AAATACCCTTGATTTGTAA
** *
43038770 AATTA-TCGAATACCCTTGATTTGTAG
1 AATTACTAAAATACCCTTGATTTGTAA
* * *
43038796 ATTTACCAAAACACCCTTG
1 AATTACTAAAATACCCTTG
43038815 TAGGGTGAAA
Statistics
Matches: 289, Mismatches: 67, Indels: 26
0.76 0.18 0.07
Matches are distributed among these distances:
26 41 0.14
27 225 0.78
28 23 0.08
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGATTTGTAA
Found at i:43038566 original size:107 final size:108
Alignment explanation
Indices: 43038427--43038675 Score: 281
Period size: 107 Copynumber: 2.3 Consensus size: 108
43038417 AGAATTACTG
* * * * * * *
43038427 AAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGA-TTAGCAAAATTGCCAAAATACCCCT
1 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCT-GCAAAATTACCAAAATA-CCAT
* * * * *
43038491 AG-TTTGTAAAATTACCAAAATACCC-TGGTTTTTTAAATTACCA
64 AGACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
* *
43038534 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGTAAAATTACCAAAATACCATCG
1 AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGCAAAATTACCAAAATACCATAG
**
43038599 ACTTATAAAATTACTGAAATACCCTTGATTTGTAAAATTACCA
66 ACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
* *
43038642 AAATACCCCTGATTTG-GAAAATTATCGAAATACC
1 AAATACCCTTGATTTGTG-AAATTATCAAAATACC
43038676 TTTGATTTGG
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
106 4 0.03
107 70 0.58
108 46 0.38
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (108 bp):
AAATACCCTTGATTTGTGAAATTATCAAAATACCCTCGACCTGCAAAATTACCAAAATACCATAG
ACTTATAAAATTACCAAAATACCCTTGATTTGTAAAATTACCA
Found at i:43038699 original size:81 final size:83
Alignment explanation
Indices: 43038427--43038811 Score: 294
Period size: 81 Copynumber: 4.8 Consensus size: 83
43038417 AGAATTACTG
* * * * * * *
43038427 AAATACCCTTGGTTTATAAAATTACCA-AAATACCCTCGATTAGCAAAATTGCCAAAATACCCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
*
43038491 -AGTTTGTAAAATTACCA
66 GACTTTGTAAAATTACCA
* * * * * *
43038508 AAATACC-CTGGTTTTTTAAATTACCA-AAATACCCTTGATTTGTGAAATTATCAAAATA-CCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
*
43038570 CGAC-CTGTAAAATTACCA
66 -GACTTTGTAAAATTACCA
* * * *
43038588 AAATACCATCGACTTATAAAATTA-CTGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
* * *
43038652 GA-TTTGGAAAATTATCG
66 GACTTTGTAAAATTACCA
* * * * * ** * *
43038669 AAATACCTTTGATTTGGAAAAATA-CAGAAATACCCCTAATTTACAAAATTA-TAGAAATACCCT
1 AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCC
*
43038732 TGACTTT-TAAAAATTA-TA
65 TGACTTTGT-AAAATTACCA
* * * * * *
43038750 GAAATACCATTGGTTTGCAAAATTATC-G-AATACCCTTGATTTGTAGATTTACCAAAACACCC
1 -AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCC
43038812 TTGTAGGGTG
Statistics
Matches: 240, Mismatches: 52, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
79 4 0.02
80 64 0.27
81 135 0.56
82 36 0.15
83 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (83 bp):
AAATACCATTGATTTGTAAAATTACCAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT
GACTTTGTAAAATTACCA
Found at i:43039486 original size:22 final size:22
Alignment explanation
Indices: 43039456--43039507 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
43039446 TGCTGCGATG
43039456 TTTACGGCTATATGCCGTCCTA
1 TTTACGGCTATATGCCGTCCTA
* * * *
43039478 TTTATGGCTATGTGCTGTCCTC
1 TTTACGGCTATATGCCGTCCTA
*
43039500 TATACGGC
1 TTTACGGC
43039508 GTTGAGCCAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.38
Consensus pattern (22 bp):
TTTACGGCTATATGCCGTCCTA
Found at i:43043615 original size:47 final size:45
Alignment explanation
Indices: 43043505--43043673 Score: 151
Period size: 48 Copynumber: 3.6 Consensus size: 45
43043495 ATAGATGTGT
* ** *
43043505 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATAAGACGAGA
* *
43043551 GCCAGTGTAAGACCATGTATGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TAAGACGAGA
* * * * *
43043599 TCTAGTGTAAGACATGTCTGGGACATTCATCGGCCTCGAAATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT---AAGACG-AGA
*
43043647 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
43043674 GCACCGGCTT
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 18 0.18
47 28 0.28
48 52 0.52
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGACGAGA
Found at i:43043750 original size:93 final size:92
Alignment explanation
Indices: 43043556--43043822 Score: 250
Period size: 93 Copynumber: 2.8 Consensus size: 92
43043546 TGAGAGCCAG
* * * *
43043556 TGTAAGACCATGTATGGGACATGGCATCGGCATTAAGACGAGATCTAGTGTAAGACATGTCTGGG
1 TGTAAGACC-TGTATGGGACATGGCATCGGC-TT-AGATGTG-TC-AGTGTAAGACCTGTTTGGG
* * * *
43043621 ACAT-TCATCGGCCTCGAAATATGCAAGCTAG
61 ACATGGCATCAGCCTCGAAATATGAAAGCTAA
* * *
43043652 TGTAAGACCTGTCTGGGACATGGCACCGGCTTGACATGTGTCAGTGTAAGACCTGTTTGGGACAT
1 TGTAAGACCTGTATGGGACATGGCATCGGCTT-AGATGTGTCAGTGTAAGACCTGTTTGGGACAT
*
43043717 GGCATCAGCCTCGATATATGAAAG-TCAA
65 GGCATCAGCCTCGAAATATGAAAGCT-AA
* * * * * *
43043745 TGTAAGACCTGTTTGGGATATGGTATTGACTTAGATGTGTGAGCCAGTGTAAGACCATGTTTGGA
1 TGTAAGACCTGTATGGGACATGGCATCGGCTTAGATGTGT----CAGTGTAAGACC-TGTTTGGG
43043810 ACATGGCATCAGC
61 ACATGGCATCAGC
43043823 ATCGTACCCT
Statistics
Matches: 143, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
92 29 0.20
93 48 0.34
94 6 0.04
95 19 0.13
96 21 0.15
97 20 0.14
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (92 bp):
TGTAAGACCTGTATGGGACATGGCATCGGCTTAGATGTGTCAGTGTAAGACCTGTTTGGGACATG
GCATCAGCCTCGAAATATGAAAGCTAA
Found at i:43056162 original size:37 final size:37
Alignment explanation
Indices: 43056108--43056182 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
43056098 TGAGGGGTGG
*
43056108 CTAAGATTTTGGAGAAGAATCTGTGTTTTGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
*
43056145 CTAAGATTTTGGGGAAGAATCTGTGTTTCGAAGGATA
1 CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
43056182 C
1 C
43056183 CGAGTTGATC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (37 bp):
CTAAGATTTTGGAGAAGAATCTGTGTTTCGAAGGATA
Found at i:43060752 original size:37 final size:37
Alignment explanation
Indices: 43060702--43060781 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
43060692 CTTATTACGA
* *
43060702 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
43060739 AGTCTTACCCGGACAAAATTCCCACACGCAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
43060776 GGTCTT
1 AGTCTT
43060782 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:43060971 original size:47 final size:47
Alignment explanation
Indices: 43060912--43061256 Score: 498
Period size: 47 Copynumber: 7.4 Consensus size: 47
43060902 TATCACATTT
* * *
43060912 ATACAC-T-TTCACATTCATCACATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43060957 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
43061004 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * * *
43061051 ATATACATGTTGACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43061098 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43061145 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
43061192 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
43061240 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
43061257 TATTCAATTA
Statistics
Matches: 272, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 245 0.90
48 19 0.07
49 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:43065208 original size:40 final size:40
Alignment explanation
Indices: 43065151--43065801 Score: 1038
Period size: 40 Copynumber: 16.6 Consensus size: 40
43065141 CCAGCATGAT
* * *
43065151 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065191 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
43065231 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
43065271 TGCTCTTCAGGACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065311 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
43065351 TGCTCTTCGGGACTTAGCCCGGAT--AT-A-T----C--A
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065381 --CTATTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
43065419 TGCTCTTCGGAACTTAGCCCGGATACATCAGTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
43065459 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065499 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
43065539 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
43065579 TGCTCTTCGGAACTTAACCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
43065619 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065659 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
43065699 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGTACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065739 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
43065779 TGCTCTTCGGGACATAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
43065802 CATCATTCGA
Statistics
Matches: 570, Mismatches: 29, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
28 21 0.04
30 3 0.01
31 1 0.00
32 2 0.00
36 2 0.00
37 1 0.00
38 3 0.01
40 537 0.94
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:43065396 original size:28 final size:28
Alignment explanation
Indices: 43065356--43065411 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
43065346 ACGAATGCTC
*
43065356 TTCGGGACTTAGCCCGGATATATCACTA
1 TTCGGGACTTAGCCCGGATACATCACTA
43065384 TTCGGGACTTAGCCCGGATACATCACTA
1 TTCGGGACTTAGCCCGGATACATCACTA
43065412 GCACGAATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (28 bp):
TTCGGGACTTAGCCCGGATACATCACTA
Found at i:43067155 original size:37 final size:37
Alignment explanation
Indices: 43067076--43067155 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
43067066 CTTATTACGA
* * * *
43067076 AGTCTTACCCGGACATAATCTCCATACGAAGTTATCG
1 AGTCTTACCCAGACAAAATCTCCACACGAAGTCATCG
*
43067113 AGTCTTACCCAGACAAAAT-TCCCACACGCAGTCATCG
1 AGTCTTACCCAGACAAAATCT-CCACACGAAGTCATCG
*
43067150 GGTCTT
1 AGTCTT
43067156 TAGAGCCCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
36 1 0.03
37 35 0.97
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCAGACAAAATCTCCACACGAAGTCATCG
Found at i:43067345 original size:47 final size:47
Alignment explanation
Indices: 43067286--43067677 Score: 574
Period size: 47 Copynumber: 8.4 Consensus size: 47
43067276 TATCACATTT
* * * *
43067286 ATACAC-T-TTCACATTCATCAAATCGGCCATTAGGCCTTATCTCAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43067331 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
43067378 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
43067425 ATATACATGTTCACTTTCATCACATTGGCCATTCGGTCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43067472 ATACACACGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43067519 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* *
43067566 ATACACCTATTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
43067613 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATTCACAC
1 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTA-TCACAC
*
43067661 ATATACACT-TTCACATT
1 ATACACA-TGTTCACATT
43067678 TATTCAATTA
Statistics
Matches: 317, Mismatches: 26, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
45 6 0.02
46 1 0.00
47 289 0.91
48 20 0.06
49 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:43067564 original size:22 final size:22
Alignment explanation
Indices: 43067537--43067611 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
43067527 GTTCACTTTC
43067537 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
43067559 ATCACACATACACCTATTC-ACATT
1 AT--CACATTGGCC-ATTCGGCCTT
43067583 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
43067606 ATCACA
1 ATCACA
43067612 CATATACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 12 0.32
23 10 0.26
24 10 0.26
25 6 0.16
ACGTcount: A:0.27, C:0.33, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:43086031 original size:102 final size:102
Alignment explanation
Indices: 43085853--43086054 Score: 386
Period size: 102 Copynumber: 2.0 Consensus size: 102
43085843 ACATGTATGA
43085853 AATCCTTATTGAGTCTAGTTTTATTAGAAACAAACGACATAATCATTGAAACTTTTTACAGGGAC
1 AATCCTTATTGAGTCTAGTTTTATTAGAAACAAACGACATAATCATTGAAACTTTTTACAGGGAC
43085918 ATATCTAATTTGTAATACACAGGGGTCAGAGCAGTCG
66 ATATCTAATTTGTAATACACAGGGGTCAGAGCAGTCG
*
43085955 AATCCTTATTGAGTCTAGTTTTATTAGAAACAAACGACATAATCATTGAAACTTTTTACAGGGAT
1 AATCCTTATTGAGTCTAGTTTTATTAGAAACAAACGACATAATCATTGAAACTTTTTACAGGGAC
*
43086020 ATATCTGATTTGTAATACACAGGGGTCAGAGCAGT
66 ATATCTAATTTGTAATACACAGGGGTCAGAGCAGT
43086055 TGAACCCTGA
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (102 bp):
AATCCTTATTGAGTCTAGTTTTATTAGAAACAAACGACATAATCATTGAAACTTTTTACAGGGAC
ATATCTAATTTGTAATACACAGGGGTCAGAGCAGTCG
Found at i:43095530 original size:46 final size:46
Alignment explanation
Indices: 43095477--43095652 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
43095467 TATTTGGGCA
* *
43095477 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * * * * *
43095523 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGC-AAGCG
* *
43095570 TCCGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * * * *
43095616 CCCGAGCTCATTGAGTTGAGTCCGATTTCATTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
43095653 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.64
47 35 0.34
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
Found at i:43099402 original size:17 final size:18
Alignment explanation
Indices: 43099377--43099414 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
43099367 TTTGTTTTGT
43099377 TTTAATTATT-ATTAACC
1 TTTAATTATTAATTAACC
* *
43099394 TTTACTTATTAATTTACC
1 TTTAATTATTAATTAACC
43099412 TTT
1 TTT
43099415 TTAACCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTAATTATTAATTAACC
Found at i:43099404 original size:14 final size:15
Alignment explanation
Indices: 43099385--43099424 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
43099375 GTTTTAATTA
43099385 TTATTAACCTTTA-C
1 TTATTAACCTTTACC
43099399 TTATTAA--TTTACC
1 TTATTAACCTTTACC
*
43099412 TTTTTAACCTTTA
1 TTATTAACCTTTA
43099425 ATAATAACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
12 4 0.18
13 7 0.32
14 7 0.32
15 4 0.18
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTAACCTTTACC
Found at i:43101450 original size:24 final size:24
Alignment explanation
Indices: 43101399--43101478 Score: 110
Period size: 24 Copynumber: 3.3 Consensus size: 24
43101389 TCATGGTCGA
* *
43101399 TAAGCTCCTCTTGAGCTGATAAACAG
1 TAAGCT-CTATTGAGCTG-GAAACAG
43101425 TAAGCTCTATTGAGCTGGAAACAG
1 TAAGCTCTATTGAGCTGGAAACAG
43101449 TAAGCTCTATTGAGCT-G-AACAG
1 TAAGCTCTATTGAGCTGGAAACAG
43101471 TAAGCTCT
1 TAAGCTCT
43101479 TTCAAGCTGA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
22 13 0.25
23 1 0.02
24 22 0.42
25 10 0.19
26 6 0.12
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (24 bp):
TAAGCTCTATTGAGCTGGAAACAG
Found at i:43101497 original size:69 final size:69
Alignment explanation
Indices: 43101422--43101602 Score: 199
Period size: 69 Copynumber: 2.6 Consensus size: 69
43101412 AGCTGATAAA
* * *
43101422 CAGTAAGCTCTATTGAGCTGGAAACAGTAAGCTC-TATTGAGCTGAA-CAGTAAGCTCTTTCAAG
1 CAGTAAGCTCTATTGAGCT-GAAACAGTAAGCTCTTA-CGAGCTAAATCAGTAAGCTCTTACAAG
43101485 CTGAAT
64 CTGAAT
* * * * *
43101491 CGGTAAGCT-TCAATAAGCTAAAACAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCTTACGAGC
1 CAGTAAGCTCT-ATTGAGCTGAAACAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCTTACAAGC
43101555 TGAAT
65 TGAAT
* * *
43101560 CAGTAAGCTC-ATACGAGCTGAATCAGTAAGCTCATACGAGCTA
1 CAGTAAGCTCTAT-TGAGCTGAAACAGTAAGCTCTTACGAGCTA
43101603 TGGTGAGTTC
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
68 22 0.24
69 70 0.76
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (69 bp):
CAGTAAGCTCTATTGAGCTGAAACAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCTTACAAGCT
GAAT
Found at i:43101532 original size:23 final size:23
Alignment explanation
Indices: 43101419--43101601 Score: 162
Period size: 23 Copynumber: 8.0 Consensus size: 23
43101409 TTGAGCTGAT
*
43101419 AAACAGTAAGCTC-TATTGAGCTGG
1 AAACAGTAAGCTCATA-CGAGCT-G
*
43101443 AAACAGTAAGCTC-TATTGAGCTG
1 AAACAGTAAGCTCATA-CGAGCTG
* * *
43101466 -AACAGTAAGCTCTTTCAAGCTG
1 AAACAGTAAGCTCATACGAGCTG
* * *
43101488 AATCGGTAAGCTTCAATA--AGCTA
1 AAACAGTAAGC-TC-ATACGAGCTG
*
43101511 AAACAGTAAGCTCTTACGAGCT-
1 AAACAGTAAGCTCATACGAGCTG
*
43101533 AAATCAGTAAGCTCTTACGAGCTG
1 AAA-CAGTAAGCTCATACGAGCTG
*
43101557 AATCAGTAAGCTCATACGAGCTG
1 AAACAGTAAGCTCATACGAGCTG
*
43101580 AATCAGTAAGCTCATACGAGCT
1 AAACAGTAAGCTCATACGAGCT
43101602 ATGGTGAGTT
Statistics
Matches: 138, Mismatches: 13, Indels: 17
0.82 0.08 0.10
Matches are distributed among these distances:
21 2 0.01
22 22 0.16
23 87 0.63
24 26 0.19
25 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (23 bp):
AAACAGTAAGCTCATACGAGCTG
Found at i:43101598 original size:46 final size:45
Alignment explanation
Indices: 43101420--43101601 Score: 183
Period size: 46 Copynumber: 4.0 Consensus size: 45
43101410 TGAGCTGATA
* * *
43101420 AACAGTAAGCTC-TATTGAGCTGGAAACAGTAAGCTC-TATTGAGCTG
1 AACAGTAAGCTCTTA-CGAGCT-GAATCAGTAAGCTCATA-CGAGCTG
* * * *
43101466 AACAGTAAGCTCTTTCAAGCTGAATCGGTAAGCTTCAATA--AGCTAA
1 AACAGTAAGCTCTTACGAGCTGAATCAGTAAGC-TC-ATACGAGCT-G
* *
43101512 AACAGTAAGCTCTTACGAGCTAAATCAGTAAGCTCTTACGAGCTG
1 AACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCATACGAGCTG
*
43101557 AATCAGTAAGCTCATACGAGCTGAATCAGTAAGCTCATACGAGCT
1 AA-CAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCATACGAGCT
43101602 ATGGTGAGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 16
0.78 0.10 0.11
Matches are distributed among these distances:
44 2 0.02
45 18 0.16
46 90 0.80
47 1 0.01
48 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (45 bp):
AACAGTAAGCTCTTACGAGCTGAATCAGTAAGCTCATACGAGCTG
Found at i:43104870 original size:172 final size:173
Alignment explanation
Indices: 43104577--43105082 Score: 758
Period size: 172 Copynumber: 3.0 Consensus size: 173
43104567 CTGAATGATC
* * *
43104577 TGAGGTAGCTTCGGCTACATATGTTTATGTTGCACTTATGTGAAAGTTTTCGTGTACCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
43104642 ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
66 ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
*
43104707 TGAAGGTATGCTTGTATACTATACTATGAATGTGTACAAG-TA
131 TGAAGGTATGCTTGTATACTATACTACGAATGTGTACAAGATA
*
43104749 TGAGGTAGCTTTGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
** ** * * **
43104814 ATTCCAAACGTTTAACGGGTAATGCAATGGATGATGAAATGAAATTCCTAAGGAGGGCATGTTAA
66 ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
* * * ** *
43104879 TGAATGTATGCTTGTAT-CCAT--TGCGAGCGT-TGA-ATGATA
131 TGAAGGTATGCTTGTATACTATACTACGAATGTGT-ACAAGATA
* *
43104918 TGAGGTAGCTTCAGCTACATATGTTTATGTCACA-TT-TGTGCAAGTTTTCGTGTATCCAATAAT
1 TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
43104981 ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
66 ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
43105046 TGAAGGTATGCTTGTATACTATACTACGAATGTGTAC
131 TGAAGGTATGCTTGTATACTATACTACGAATGTGTAC
43105083 TCCAAACCCA
Statistics
Matches: 292, Mismatches: 35, Indels: 15
0.85 0.10 0.04
Matches are distributed among these distances:
167 100 0.34
168 8 0.03
169 39 0.13
170 7 0.02
171 4 0.01
172 134 0.46
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (173 bp):
TGAGGTAGCTTCGGCTACATATGTTTATGTCGCACTTATGTGCAAGTTTTCGTGTATCCAATAAT
ATTCTGAGTGTTCAACGGGTAATGCAATGGATGATGAAATGAAAGTCCCGAGGAGGGCATGTTAA
TGAAGGTATGCTTGTATACTATACTACGAATGTGTACAAGATA
Found at i:43107622 original size:16 final size:16
Alignment explanation
Indices: 43107601--43107631 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43107591 TCGACAACCC
*
43107601 ACTTTTCGGCTTTTTG
1 ACTTTTCAGCTTTTTG
43107617 ACTTTTCAGCTTTTT
1 ACTTTTCAGCTTTTT
43107632 TTGTTTTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.13, T:0.58
Consensus pattern (16 bp):
ACTTTTCAGCTTTTTG
Found at i:43118956 original size:50 final size:50
Alignment explanation
Indices: 43118837--43119233 Score: 306
Period size: 50 Copynumber: 7.9 Consensus size: 50
43118827 ATTTTGAGAA
* * ** *** *
43118837 CACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG--TTAGGT
*
43118889 CACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGT
* * * * * * *
43118939 CGCATGTGTTGTACTAAGTGCAGGCTACTATGC-GTACCCGAAAATTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCAG-ATAGTT-AGGT
* * * * *
43118990 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGT
** *
43119040 CATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGT
* * * * *
43119089 CGCATGTGTAGTACTAAGTGCAGGCTACTATGC-GTA-CATGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCA-GA-TAGTT-AGGT
* * * * *
43119140 CACATGTGTAGTACTAAGTGTAGGATATTACATGTATCAGAT-GATTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAG-TTAGGT
* * *
43119190 CACGTGTGTAGTACTAAGTGCAGGATACTATGC-GTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCAGATAG
43119234 CTTCGGTTAC
Statistics
Matches: 274, Mismatches: 55, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
48 2 0.01
49 41 0.15
50 120 0.44
51 72 0.26
52 39 0.14
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGT
Found at i:43119017 original size:101 final size:101
Alignment explanation
Indices: 43118888--43119069 Score: 296
Period size: 101 Copynumber: 1.8 Consensus size: 101
43118878 TGGTTTTAGG
*
43118888 TCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGTCGCATGTGT-T-GT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAGTTAGGT--CATGTGTGTAGT
43118951 ACTAAGTGCAGGCTACTATGCGTACCCGAAAATTTCAA
64 ACTAAGTGCAGGCTACTATGCGTACCCGAAAATTTCAA
* * *
43118989 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAGTTAGGTCATGTGTGTAGTAC
43119054 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
43119070 CGTGTACCAG
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
99 7 0.09
100 1 0.01
101 67 0.89
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACCTGTACCAGATAGTTAGGTCATGTGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGAAAATTTCAA
Found at i:43119138 original size:150 final size:151
Alignment explanation
Indices: 43118837--43119233 Score: 571
Period size: 150 Copynumber: 2.6 Consensus size: 151
43118827 ATTTTGAGAA
* * * * *
43118837 CACATGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTA
* *
43118902 CTAAGTGCAGGCTACTACCTGTACCAGATAGTTAGGTCGCATGTGTTGTACTAAGTGCAGGCTAC
64 CTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTAC
* *
43118967 TATGCGTACCCGAAAATTTCAAT
129 TATGCGTACACGAAAACTTCAAT
* * *
43118990 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
43119055 AAGTGCAGGCTACTACGTGTACCAGAT-GTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
66 AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
* *
43119119 TGCGTACATGACAACTTCAAT
131 TGCGTACACGAAAACTTCAAT
* * * * *
43119140 CACATGTGTAGTACTAAGTGTAGGATATTACATGTATCAGATGATTAGGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
* * *
43119205 AAGTGCAGGATACTATGCGTACCAGATAG
66 AAGTGCAGGCTACTACGTGTACCAGATAG
43119234 CTTCGGTTAC
Statistics
Matches: 218, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
150 134 0.61
151 47 0.22
153 37 0.17
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (151 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
TGCGTACACGAAAACTTCAAT
Found at i:43119219 original size:101 final size:100
Alignment explanation
Indices: 43119044--43119226 Score: 285
Period size: 101 Copynumber: 1.8 Consensus size: 100
43119034 TTAGGTCATG
* * *
43119044 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTAGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATGTTAGGTCACATGTGTAGTACTAAGTG
*
43119109 CAGGCTACTATGCGTACATGACAACTTCAATCACA
66 CAGGATACTATGCGTACATGACAACTTCAATCACA
* * * *
43119144 TGTGTAGTACTAAGTGTAGGATATTACATGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATG-TTAGGTCACATGTGTAGTACTAAGT
43119209 GCAGGATACTATGCGTAC
65 GCAGGATACTATGCGTAC
43119227 CAGATAGCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 34 0.46
101 40 0.54
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGATACTACATGTACCAGATGTTAGGTCACATGTGTAGTACTAAGTG
CAGGATACTATGCGTACATGACAACTTCAATCACA
Found at i:43122732 original size:27 final size:27
Alignment explanation
Indices: 43122702--43122879 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
43122692 ATATTGAGCC
* *
43122702 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
43122729 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
43122756 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
43122784 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
43122811 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
43122838 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
43122865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43122880 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:43122814 original size:55 final size:54
Alignment explanation
Indices: 43122702--43122879 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
43122692 ATATTGAGCC
* * * * *
43122702 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
43122756 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
43122811 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
43122865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43122880 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:43137486 original size:27 final size:27
Alignment explanation
Indices: 43137449--43137560 Score: 151
Period size: 27 Copynumber: 4.2 Consensus size: 27
43137439 AGCATGGCCG
* *
43137449 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
43137475 CCAGATACAG--ATTTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
43137501 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATATTTGTGGCAG-AGCCA
*
43137528 CCAAAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
43137555 CCAGAA
1 CCAGAA
43137561 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
25 5 0.07
26 23 0.30
27 47 0.62
28 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:43139046 original size:40 final size:39
Alignment explanation
Indices: 43138994--43139111 Score: 134
Period size: 39 Copynumber: 3.0 Consensus size: 39
43138984 TCCAATTTCT
* *
43138994 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATAT-TAATACC
* * *
43139034 AGCACTAGGCCTGC-GGACTATAAGTCCGGATA-TAATACC
1 AGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATTAATACC
*
43139073 AGCATTAAGCCTGCGGGATTTAACCCGGATA-TAATACC
1 AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
43139111 A
1 A
43139112 CATAAATTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
38 15 0.23
39 25 0.38
40 19 0.29
41 7 0.11
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (39 bp):
AGCACTAAGCCTGCGGGATTTAACCCGGATATTAATACC
Found at i:43143549 original size:40 final size:40
Alignment explanation
Indices: 43143505--43143728 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
43143495 AAGTGAATAT
* * * * **
43143505 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
43143545 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
43143585 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
*
43143625 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * * **
43143665 ATCCGGGTTATGTCTCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
43143704 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
43143729 TGAACGAGGA
Statistics
Matches: 167, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 33 0.20
40 134 0.80
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:43143603 original size:80 final size:80
Alignment explanation
Indices: 43143466--43143728 Score: 300
Period size: 80 Copynumber: 3.3 Consensus size: 80
43143456 TTGAATGCTG
* * * * *
43143466 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
43143528 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
43143546 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
43143611 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * * * *
43143626 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTATGTCTCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
43143690 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
43143705 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
43143729 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
79 35 0.22
80 114 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:43151065 original size:39 final size:39
Alignment explanation
Indices: 43150893--43151154 Score: 262
Period size: 40 Copynumber: 6.6 Consensus size: 39
43150883 TTGAATGCTG
* * * *
43150893 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTA-A
* * * ** *
43150933 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAG-TTGTTAA
43150973 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTT-AA
43151013 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
*
43151052 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTT-AA
* * * *
43151092 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-GTTAA
* * *
43151131 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
43151155 TGAACGAGGA
Statistics
Matches: 193, Mismatches: 21, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
39 72 0.37
40 112 0.58
41 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:43151175 original size:79 final size:79
Alignment explanation
Indices: 43150893--43151154 Score: 307
Period size: 79 Copynumber: 3.3 Consensus size: 79
43150883 TTGAATGCTG
* * * * * *
43150893 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGG-C
* *
43150955 TTTGTGCGAGATACTAAA
62 ATTGTGCGAGTTACTAAA
43150973 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT-
* *
43151038 GTGCGAGTT-GTTAA
65 GTGCGAGTTACTAAA
* *
43151052 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
*
43151117 TGTGAGTTACTAAA
66 TGCGAGTTACTAAA
* * *
43151131 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
43151155 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
78 8 0.05
79 93 0.58
80 50 0.31
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTTACTAAA
Found at i:43164273 original size:26 final size:26
Alignment explanation
Indices: 43164244--43164309 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
43164234 AGCATGGCTG
* ** *
43164244 CCAGAATAGATATTGTGATGGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
43164270 CCAGATACAGAT-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
43164296 CCAGAACAGATATT
1 CCAGAACAGATATT
43164310 TGGGGTGTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 6 0.18
26 22 0.67
27 5 0.15
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:43164348 original size:28 final size:28
Alignment explanation
Indices: 43164268--43164356 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 28
43164258 GTGATGGAGT
* *
43164268 CACCAGATACAG--ATTTGTGGCAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
* **
43164294 CACCAG-AACAGATATTTGGGGTGTAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
43164321 CACTAGAAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
43164349 CACCAGAA
1 CACCAGAA
43164357 CGCTTCCTCC
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
25 4 0.08
26 6 0.12
27 15 0.30
28 25 0.50
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:43166834 original size:49 final size:49
Alignment explanation
Indices: 43166778--43166879 Score: 168
Period size: 49 Copynumber: 2.1 Consensus size: 49
43166768 TAAGTTACTA
* *
43166778 TAAGTTTCAAAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGG
1 TAAGTTTCAAAAGGATACCACGTAAGACCATGACAAGACATGGCAATGG
* *
43166827 TAAGTTTCAAAAGGTTACCACGTAAGACCATGACAAGTCATGGCAATGG
1 TAAGTTTCAAAAGGATACCACGTAAGACCATGACAAGACATGGCAATGG
43166876 TAAG
1 TAAG
43166880 GTACCCGCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (49 bp):
TAAGTTTCAAAAGGATACCACGTAAGACCATGACAAGACATGGCAATGG
Found at i:43184430 original size:40 final size:40
Alignment explanation
Indices: 43184334--43184545 Score: 284
Period size: 40 Copynumber: 5.3 Consensus size: 40
43184324 GCTCCTCGTT
* * *
43184334 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
43184374 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
43184413 CGAATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
43184453 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
43184493 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
43184533 CAAATGCCTTCGG
1 CAAATGCCTTCGG
43184546 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 35 0.22
40 120 0.75
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:43184558 original size:80 final size:79
Alignment explanation
Indices: 43184334--43184598 Score: 252
Period size: 80 Copynumber: 3.3 Consensus size: 79
43184324 GCTCCTCGTT
* * * * * *
43184334 CAAATGCCTTCGGGACATAGCCCGG-TTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCG
1 CAAA-GCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
43184397 GATTTAATAACTCGCA
65 GATTTAAT-ACTCGCA
* * *
43184413 CGAATGCCTTCGGGACATAACCCGG-ATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 C-AAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
43184477 GATTTAGTATCTCGCA
65 GATTTAATA-CTCGCA
* * * **
43184493 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAA-GCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
43184556 GGATATATTCACTTAGCA
64 GGATTTAAT-AC-TCGCA
*
43184574 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAACCCGGA
43184599 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
79 39 0.25
80 106 0.67
81 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAATACTCGCA
Found at i:43184558 original size:120 final size:119
Alignment explanation
Indices: 43184336--43184598 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 119
43184326 TCCTCGTTCA
* * *
43184336 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
43184401 TAATAACTCGCACGAATGCCTTCGGGACATAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACATAACCCGGATATAATAACTTAGCAC
* * * * *
43184454 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * * ** * *
43184519 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CATAACCCGGATATAATAACTTAGCAC
*
43184575 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
43184599 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 37 0.31
120 74 0.62
121 9 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACATAACCCGGATATAATAACTTAGCAC
Found at i:43184607 original size:41 final size:41
Alignment explanation
Indices: 43184530--43184607 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
43184520 TTTGTATCTC
* * *
43184530 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43184571 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43184608 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:43197341 original size:46 final size:46
Alignment explanation
Indices: 43197265--43197401 Score: 152
Period size: 46 Copynumber: 2.9 Consensus size: 46
43197255 AAGCTCCTCC
* * *
43197265 TGAGCTGATAAATAGTAAGCTCTATT-GAGCTAGAAACGATAAGCTCTAT
1 TGAGCTG--AAATAGTAAGCTCT-TTCGAGCT-GAATCGATAAGCTCCAA
* *
43197314 TGAGCTG-AATAGTAAGCTATTTCGAGCTGAATCGGTAAGCTCCAA
1 TGAGCTGAAATAGTAAGCTCTTTCGAGCTGAATCGATAAGCTCCAA
* * *
43197359 TGAGTTGAAATAGTAAGCTCTTACGAGCTGAATCAATAAGCTC
1 TGAGCTGAAATAGTAAGCTCTTTCGAGCTGAATCGATAAGCTC
43197402 ATACGAGCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
45 21 0.28
46 48 0.63
49 7 0.09
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
TGAGCTGAAATAGTAAGCTCTTTCGAGCTGAATCGATAAGCTCCAA
Found at i:43197390 original size:23 final size:23
Alignment explanation
Indices: 43197315--43197410 Score: 88
Period size: 23 Copynumber: 4.2 Consensus size: 23
43197305 AAGCTCTATT
* *
43197315 GAGCTGAAT-AGTAAGCTATTTC
1 GAGCTGAATCAGTAAGCTCTTAC
* ** *
43197337 GAGCTGAATCGGTAAGCTCCAAT
1 GAGCTGAATCAGTAAGCTCTTAC
*
43197360 GAGTTGAAAT-AGTAAGCTCTTAC
1 GAGCTG-AATCAGTAAGCTCTTAC
* *
43197383 GAGCTGAATCAATAAGCTCATAC
1 GAGCTGAATCAGTAAGCTCTTAC
43197406 GAGCT
1 GAGCT
43197411 ATCGTGAGTC
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
22 12 0.21
23 42 0.74
24 3 0.05
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
GAGCTGAATCAGTAAGCTCTTAC
Found at i:43199281 original size:30 final size:30
Alignment explanation
Indices: 43199247--43199332 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
43199237 TTTTCGAGCA
43199247 TAGGGGTAAAATGGTCATTTTGCCAAGGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAGGCC
43199277 TAGGGGTAAAATGGTCATTTTGCCAAGGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAGGCC
* *
43199307 TAGGGGCAAAATGGTCATTTTACCAA
1 TAGGGGTAAAATGGTCATTTTGCCAA
43199333 AGTTGTGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (30 bp):
TAGGGGTAAAATGGTCATTTTGCCAAGGCC
Found at i:43199745 original size:47 final size:46
Alignment explanation
Indices: 43199670--43199986 Score: 159
Period size: 47 Copynumber: 6.7 Consensus size: 46
43199660 GGATTATATG
* *
43199670 AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACA
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACA
*
43199718 AGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATG---
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAG---CATTGA-GACA
* * * * * **
43199764 ATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATAGAGAGG
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACA
* * * * * *
43199812 AGTGCCAGTGTAAGACATGTTTGGGACATGCATCGGC-CTCA-ATCA
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGA-CA
* * * * *
43199857 TGATAGCTAGTGTAAGACGTTTCTGGGACATGCATCAG--TTAAG-CTT
1 --AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAC-A
* * * * * *
43199903 TGTGCTAGTGTAAGACATGTTTGGGACATGCATCAACA-CGTATACA
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTG-AGACA
*
43199949 TGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
1 --AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
43199987 GTCCTCGATG
Statistics
Matches: 203, Mismatches: 43, Indels: 44
0.70 0.15 0.15
Matches are distributed among these distances:
44 30 0.15
45 6 0.03
46 31 0.15
47 68 0.33
48 46 0.23
49 17 0.08
50 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACA
Found at i:43199778 original size:94 final size:95
Alignment explanation
Indices: 43199667--43199986 Score: 348
Period size: 94 Copynumber: 3.4 Consensus size: 95
43199657 ATTGGATTAT
*
43199667 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACAAGGGCTAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACAAGTGCTAGTGTAAG
* *
43199732 ACATGTCTGGGACATGCATCAGCCAC-ATT
66 ACATGTTTGGGACATGCATCAGCCACAATC
* * * * * ** *
43199761 ATGATAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATAGAGAGGAGTGCCAGTGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACAAGTGCTAGTGTAAG
* *
43199826 ACATGTTTGGGACATGCATCGGCCTCAATC
66 ACATGTTTGGGACATGCATCAGCCACAATC
* * * * * * **
43199856 ATGATAGCTAGTGTAAGA-CGTTTCTGGGACAT-GCATCAG--TTAAG-CTTTGTGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGAC-AAGTGCTAGTGTAA
* *
43199916 GACATGTTTGGGACATGCATCA-ACACGTATAC
65 GACATGTTTGGGACATGCATCAGCCAC-AAT-C
*
43199948 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
43199987 GTCCTCGATG
Statistics
Matches: 188, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
90 2 0.01
91 37 0.20
92 18 0.10
93 17 0.09
94 95 0.51
95 19 0.10
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (95 bp):
ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGACAAGTGCTAGTGTAAG
ACATGTTTGGGACATGCATCAGCCACAATC
Found at i:43199986 original size:141 final size:142
Alignment explanation
Indices: 43199667--43200035 Score: 335
Period size: 141 Copynumber: 2.6 Consensus size: 142
43199657 ATTGGATTAT
* * * **
43199667 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGA-CA-AGGGCTAGTGTA
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCA-ATCAGATAGCTAGTGTA
* *
43199730 AGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATGTCTGGGATATG
64 AGACATGTCTGGGACATGCATCAGCAACATTATGATAGCCAGTGTAAGACCATGTCTGGGACATG
** *
43199795 GCATCGGCATAGAG
129 GCATCAACATAGAC
* * * *
43199809 AGGAGTGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCAATCATGATAGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATCA-GATAGCTAGTGTAA
* * * * *
43199872 GACGTTTCTGGGACATGCATCAGTTAAGC-TT-TG-T-GCTAGTGTAAGA-CATGTTTGGGACAT
65 GACATGTCTGGGACATGCATCAG-CAA-CATTATGATAGCCAGTGTAAGACCATGTCTGGGACAT
*
43199932 -GCATCAACACGTATAC
128 GGCATCAACA--TAGAC
* * * * *
43199948 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGTCCTCGATGAAGATAGCCAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAAT-CAGATAGCTAGTGTAA
* *
43200013 GGCCATGTTTGGGACATGGCATC
65 -GACATGTCTGGGACAT-GCATC
43200036 GGTAACTTAA
Statistics
Matches: 182, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
137 7 0.04
138 13 0.07
139 33 0.18
140 20 0.11
141 71 0.39
142 32 0.18
143 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (142 bp):
ATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATCAGATAGCTAGTGTAAG
ACATGTCTGGGACATGCATCAGCAACATTATGATAGCCAGTGTAAGACCATGTCTGGGACATGGC
ATCAACATAGAC
Found at i:43203340 original size:9 final size:9
Alignment explanation
Indices: 43203326--43203351 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
43203316 GCATCGAGAC
43203326 TTTGTTCAT
1 TTTGTTCAT
43203335 TTTGTTCAT
1 TTTGTTCAT
43203344 TTTGTTCA
1 TTTGTTCA
43203352 ATGGCATGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (9 bp):
TTTGTTCAT
Found at i:43217110 original size:29 final size:29
Alignment explanation
Indices: 43217068--43217144 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
43217058 GAATAATTAT
* *
43217068 CATGACCCAAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
43217097 CATGGCCCGAAGCCAAATCATCCGATATG
1 CATGGCCCGAAGCCAAATCATCCGATATG
*
43217126 CATGGCCTGAAGCCAAATC
1 CATGGCCCGAAGCCAAATC
43217145 GGTATAACTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.34, C:0.31, G:0.18, T:0.17
Consensus pattern (29 bp):
CATGGCCCGAAGCCAAATCATCCGATATG
Found at i:43221300 original size:20 final size:21
Alignment explanation
Indices: 43221275--43221321 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
43221265 TCACTTAACA
43221275 AAACATGCATAACT-ATCATC
1 AAACATGCATAACTCATCATC
** *
43221295 AAACATTTATAATTCATCATC
1 AAACATGCATAACTCATCATC
43221316 AAACAT
1 AAACAT
43221322 CAAAATACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (21 bp):
AAACATGCATAACTCATCATC
Found at i:43226612 original size:12 final size:14
Alignment explanation
Indices: 43226597--43226628 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
43226587 GTGAGAACAC
43226597 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
43226609 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
43226623 ATGTGT
1 ATGTGT
43226629 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:43226675 original size:52 final size:50
Alignment explanation
Indices: 43226594--43226728 Score: 153
Period size: 52 Copynumber: 2.7 Consensus size: 50
43226584 ATTGTGAGAA
* * ** *
43226594 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAG--TTAGGT
* * *
43226646 CACATGTGTAGTACTAAGTGCAGGTTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
* * *
43226696 CGCATGTGAAGTACTAAGTCCAGGCTACTATGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGT
43226729 AATATCCTGA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
50 34 0.49
52 36 0.51
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
Found at i:43228070 original size:46 final size:46
Alignment explanation
Indices: 43228020--43228192 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
43228010 TGGTTGAGCA
43228020 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
43228066 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
43228111 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
43228159 CCCGAGCTCGTTGAGTTGATTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
43228193 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.55
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:43228176 original size:93 final size:93
Alignment explanation
Indices: 43228017--43228187 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
43228007 GGATGGTTGA
* *
43228017 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
43228082 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
43228110 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
* *
43228175 TGATTTCGAGTTC
66 TGAGTCCGAGTTC
43228188 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:43229618 original size:50 final size:49
Alignment explanation
Indices: 43229532--43229662 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 49
43229522 GCAACTTCAA
* * *
43229532 TCACGTGTGTACTACTAAATGCAAGCTACTATGTGTATCA-AATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-AGAATGGTT-GG
* * *
43229582 TCACGTGTGTAGTACTAAGTGCAGGCTA-TTTCGTGTATAGGATTGTTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAT-GTGTATAGAATGGTTGG
* * *
43229631 TCGCATGCGTAGTACTAAGT-CAGGCTACTATG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATG
43229663 CGTACCAGAT
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
48 8 0.12
49 24 0.35
50 36 0.53
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATAGAATGGTTGG
Found at i:43229884 original size:16 final size:15
Alignment explanation
Indices: 43229863--43229892 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
43229853 GAATGGAGAT
43229863 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
43229879 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
43229893 TAAACCAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:43231931 original size:29 final size:29
Alignment explanation
Indices: 43231870--43231959 Score: 146
Period size: 29 Copynumber: 3.1 Consensus size: 29
43231860 ACATACATGT
* *
43231870 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
43231898 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
43231927 TTATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
43231956 ATAT
1 ATAT
43231960 TCATGATTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 17 0.30
29 40 0.70
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:43235776 original size:27 final size:27
Alignment explanation
Indices: 43235745--43235922 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
43235735 TAAATTGTAC
43235745 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
43235772 TGCACTGAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43235798 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
43235826 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
43235854 GGCACTTAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43235881 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43235908 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43235923 GACTCAATAT
Statistics
Matches: 125, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
27 102 0.82
28 23 0.18
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43235859 original size:82 final size:81
Alignment explanation
Indices: 43235746--43235901 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
43235736 AAATTGTACA
* *
43235746 GCACTAAGTGTGCGATTTGACTATGTTGCACTGAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGTA-GCACTAAGTG
43235810 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
43235827 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTTAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
43235892 TGCGAGTTGA
65 TGCGAATTGA
43235902 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43235913 original size:82 final size:81
Alignment explanation
Indices: 43235742--43235922 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
43235732 GATTAAATTG
* *
43235742 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTGAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGATGCACTAA
43235807 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
43235823 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTTAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGAT-GCACT
* **
43235887 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
43235905 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
43235923 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGGCACTGAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:43241828 original size:29 final size:30
Alignment explanation
Indices: 43241773--43241829 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
43241763 GCATTTTGAA
* *
43241773 AATATTTACAAAAAGAGGCATCTAATTTAT
1 AATATTTACAAAAAGAGGCACCAAATTTAT
43241803 AATATTTAC-AAAAGA-GCAACCAAATTT
1 AATATTTACAAAAAGAGGC-ACCAAATTT
43241830 TAAAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 13 0.54
30 9 0.38
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTAT
Found at i:43244357 original size:13 final size:13
Alignment explanation
Indices: 43244339--43244363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43244329 CGGGTACTTG
43244339 TCAGCTTGAGTAA
1 TCAGCTTGAGTAA
43244352 TCAGCTTGAGTA
1 TCAGCTTGAGTA
43244364 GTTACGTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (13 bp):
TCAGCTTGAGTAA
Found at i:43250061 original size:46 final size:45
Alignment explanation
Indices: 43249912--43250132 Score: 205
Period size: 46 Copynumber: 4.8 Consensus size: 45
43249902 GGTAAGGTGT
* * * *
43249912 CGATGCCATGTCCCAGACATGGCCTTACACTAACTATCAT-TTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTT-AT-GC
* * * * *
43249960 CGATGCATGTCCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCT-TATGC
*
43250006 CGATGCATGTCCC-GACATGTCTTACACTAGCTCTCATCTTAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTT-ATGC
* **
43250051 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATAATATAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTTAT-GC
*
43250099 CGATGCATGTCCCGGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
43250133 ACAAACAAAT
Statistics
Matches: 144, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 29 0.20
46 51 0.35
47 34 0.24
48 30 0.21
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTATGC
Found at i:43250281 original size:10 final size:10
Alignment explanation
Indices: 43250266--43250295 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
43250256 ATATTAACTT
43250266 AATACAATTC
1 AATACAATTC
43250276 AATACAATTC
1 AATACAATTC
43250286 AATAC-ATTC
1 AATACAATTC
43250295 A
1 A
43250296 TTAACAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.25
10 15 0.75
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (10 bp):
AATACAATTC
Found at i:43256070 original size:24 final size:24
Alignment explanation
Indices: 43256022--43256071 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
43256012 TCACTATATG
* *
43256022 AAAACATAATTTATAATCGTTAGT
1 AAAACATAATTTATAATCATCAGT
43256046 AAAACATAATTTATAATCATCAGT
1 AAAACATAATTTATAATCATCAGT
43256070 AA
1 AA
43256072 TCGTCACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.34
Consensus pattern (24 bp):
AAAACATAATTTATAATCATCAGT
Found at i:43258462 original size:27 final size:27
Alignment explanation
Indices: 43258423--43258600 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
43258413 ATTTTGAGCC
* * *
43258423 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
43258450 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
43258477 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAGTCAA-CT
** * *
43258505 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
43258532 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
43258559 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAGTC-AACT
43258586 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43258601 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:43258562 original size:82 final size:81
Alignment explanation
Indices: 43258444--43258599 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
43258434 TGCTATATAA
* *
43258444 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
43258508 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
43258526 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
43258590 CACTTAGTGC
65 CACTTAGTGC
43258600 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43261579 original size:50 final size:49
Alignment explanation
Indices: 43261452--43261643 Score: 206
Period size: 50 Copynumber: 3.9 Consensus size: 49
43261442 TATGTAGCCA
* * * * **
43261452 AACTATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACT
1 AACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACT
*
43261501 AATTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACCT
1 AACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAA-CT
* * * *
43261551 AACTATCTGATACACGTTGTAGCCTGCACTTAGTACTACACACGTGATCG
1 AACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT-AACT
* * * *
43261601 AAGTTAT-TGGGTACGCATAGTAGCCTACACTTAGTACTACACA
1 AA-CTATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACA
43261644 TGCCACCTAG
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
49 40 0.33
50 48 0.40
51 33 0.27
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (49 bp):
AACTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTAACT
Found at i:43261652 original size:101 final size:99
Alignment explanation
Indices: 43261452--43261652 Score: 242
Period size: 101 Copynumber: 2.0 Consensus size: 99
43261442 TATGTAGCCA
* * * * *
43261452 AACTATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACTAATTATCTGGTACACG
1 AACTATCTGATACACATAGTAGCCTGCACTTAATACTACACACGCGACGAATTATCTGGTACACA
* *
43261517 TAGTAGCCTGCACTTAGTACTACACACGTAACCT
66 TAGTAGCCTACACTTAGTACTACACACGCAACCT
* * * *
43261551 AACTATCTGATACACGTTGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAT-TGGGTAC
1 AACTATCTGATACACATAGTAGCCTGCACTTAATACTACACACGCGA-CGAA-TTATCT-GGTAC
* * *
43261615 GCATAGTAGCCTACACTTAGTACTACACATGCCACCT
63 ACATAGTAGCCTACACTTAGTACTACACACGCAACCT
43261652 A
1 A
43261653 GCTACATACA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
99 40 0.47
100 4 0.05
101 41 0.48
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (99 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAATACTACACACGCGACGAATTATCTGGTACACA
TAGTAGCCTACACTTAGTACTACACACGCAACCT
Found at i:43262493 original size:30 final size:30
Alignment explanation
Indices: 43262457--43262517 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
43262447 TCCTTAACTC
*
43262457 AAACTTTGGAAAATTTACAATTTTTCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
43262487 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
43262517 A
1 A
43262518 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:43263920 original size:47 final size:47
Alignment explanation
Indices: 43263849--43264027 Score: 213
Period size: 47 Copynumber: 3.8 Consensus size: 47
43263839 TGGGTGAGGT
43263849 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * * ** *
43263896 GTCGATGCCATATCCCAGACATGGTCTTACACTGGCTTACCTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AA
* *
43263944 GCCGATG-CATGTCCC-GAACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCAT-ATCTCAA
*
43263989 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
43264028 TCACAATGTG
Statistics
Matches: 110, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 25 0.23
47 63 0.57
48 21 0.19
ACGTcount: A:0.21, C:0.32, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:43264018 original size:94 final size:92
Alignment explanation
Indices: 43263849--43264074 Score: 278
Period size: 94 Copynumber: 2.4 Consensus size: 92
43263839 TGGGTGAGGT
* *
43263849 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATATCCCAG
1 GCCGATG-CATGTCCCA-ACAT-GTCTTACACTAGCTCATATCTCAAGCCGATGCCATATCCCAG
**
43263914 ACATGGTCTTACACTGGCT-T-ACCTCTCGAG
63 ACATGGTCTTACACTGGCTCTCA-CAAT-GAG
* *
43263944 GCCGATGCATGTCCCGAACATGTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCC-AACATGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATATCCCAG
* *
43264008 ACATGGTCTTACATTGGCTCTCACAATGTG
63 ACATGGTCTTACACTGGCTCTCACAATGAG
43264038 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCA
1 GCCGATGCATGTCCC-AACATGTCTTACACTAGCTCA
43264075 CAAACAAATG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
92 1 0.01
93 20 0.17
94 83 0.72
95 11 0.09
96 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAACATGTCTTACACTAGCTCATATCTCAAGCCGATGCCATATCCCAGACA
TGGTCTTACACTGGCTCTCACAATGAG
Found at i:43264049 original size:47 final size:47
Alignment explanation
Indices: 43263847--43264074 Score: 206
Period size: 47 Copynumber: 4.9 Consensus size: 47
43263837 CGTGGGTGAG
*
43263847 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ATCACAA
* * * *
43263896 GT--CGATGCCATATCCCAGACATGGTCTTACACTGGCTTACCTCTCGA
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCACAA
* * *
43263943 G-GCCGATG-CATGTCCC-GAACAT-GTCTTACACTAGCTCTCGTCTCAA
1 GTGCCGATGCCATGTCCCAG-ACATGGTCTTACACT-G-GCTCATCACAA
*
43263989 -TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTC-TCACAA
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAA
* *
43264034 TGTGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCA
1 -GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
43264075 CAAACAAATG
Statistics
Matches: 151, Mismatches: 13, Indels: 32
0.77 0.07 0.16
Matches are distributed among these distances:
45 5 0.03
46 40 0.26
47 79 0.52
48 24 0.16
49 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCACAA
Found at i:43270022 original size:19 final size:18
Alignment explanation
Indices: 43269998--43270033 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
43269988 TTAAATTTAG
*
43269998 TGAATTAATTGAATTATGT
1 TGAATTAAATG-ATTATGT
43270017 TGAATTAAATGATTATG
1 TGAATTAAATGATTATG
43270034 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (18 bp):
TGAATTAAATGATTATGT
Done.