Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 135 of 320
Found at i:44194850 original size:37 final size:37
Alignment explanation
Indices: 44194800--44194901 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
44194790 GGAAATATAT
44194800 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
44194837 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
44194874 TCCGGGTAAGACCCGATAACTA-GTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
44194902 GGACTATTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 6 0.10
37 55 0.90
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:44196233 original size:40 final size:40
Alignment explanation
Indices: 44196187--44196495 Score: 460
Period size: 40 Copynumber: 7.8 Consensus size: 40
44196177 TTATATAGCT
*
44196187 GGGCTAAGTCCCGAAGAGTATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
44196227 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
*
44196267 GGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
*
44196307 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTTC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
* * * *
44196347 GGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
* * * *
44196387 GAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
* * *
44196427 GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
*
44196467 GGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 GGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
44196496 AATTATGAGG
Statistics
Matches: 254, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.06
40 240 0.94
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
Found at i:44196571 original size:29 final size:29
Alignment explanation
Indices: 44196501--44196633 Score: 121
Period size: 29 Copynumber: 4.7 Consensus size: 29
44196491 GCTGGAATTA
* * *
44196501 TGAGGCACTGTGTGTGCAAGTTCT-TCAAT
1 TGAGGCACTATGTGTGCGAGTACTGT-AAT
* *
44196530 CGA-GCGCTATGTGTGCGA-TACTGGTAAT
1 TGAGGCACTATGTGTGCGAGTACT-GTAAT
* *
44196558 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTACTGTAAT
* *
44196587 TGAGGCACTATGTGTGCGAGTTCTATAAT
1 TGAGGCACTATGTGTGCGAGTACTGTAAT
* *
44196616 CGA-GCGCTATGTGTGCGA
1 TGAGGCACTATGTGTGCGA
44196634 AATCAGTCAG
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
27 3 0.03
28 31 0.35
29 51 0.58
30 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTACTGTAAT
Found at i:44196626 original size:57 final size:57
Alignment explanation
Indices: 44196502--44196633 Score: 151
Period size: 57 Copynumber: 2.3 Consensus size: 57
44196492 CTGGAATTAT
* * * * *
44196502 GAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCGCTATGTGTGCGATACTGGTAATT
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGATACTGATAATC
* * *
44196559 GAGGCACTATGTGTGCGAGTTCTTTAATTGAGGCACTATGTGTGCGAGTTCT-ATAATC
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGA-GCACTATGTGTGCGA-TACTGATAATC
*
44196617 GA-GCGCTATGTGTGCGA
1 GAGGCACTATGTGTGCGA
44196634 AATCAGTCAG
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
57 41 0.64
58 20 0.31
59 3 0.05
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (57 bp):
GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGATACTGATAATC
Found at i:44200214 original size:48 final size:48
Alignment explanation
Indices: 44200150--44200319 Score: 268
Period size: 48 Copynumber: 3.5 Consensus size: 48
44200140 AATATATATG
* *
44200150 TATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
* * *
44200198 TATGTGATAAAGCCGAATGGCTAGTGTGAAATATGTGTGAGACATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
*
44200246 TATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
* *
44200294 TACGCGGTAAAGCCGAATGGCTAGTG
1 TATGTGGTAAAGCCGAATGGCTAGTG
44200320 ATTCGGCTAG
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.28
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTA
Found at i:44200535 original size:37 final size:37
Alignment explanation
Indices: 44200484--44200591 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
44200474 AACTTGGAAA
44200484 TATATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATA-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
44200522 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
44200559 TTTGTCCGGGTAAGACCCGATAACTACGTGTGG
1 TATATCCGGGTAAGACCCGATGACTACGTGTGG
44200592 GGACTATTCG
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
37 63 0.94
38 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TATATCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:44205565 original size:40 final size:39
Alignment explanation
Indices: 44205534--44205743 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
44205524 GGACTAAGAT
* *
44205534 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
44205574 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
44205614 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
44205654 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
44205694 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
44205733 CCGAAGGCATT
1 CCGAAGGCATT
44205744 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:44205697 original size:120 final size:120
Alignment explanation
Indices: 44205481--44205743 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
44205471 TTGAATGCTG
* *
44205481 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
44205545 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
44205601 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
44205664 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
44205720 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
44205744 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:44205763 original size:79 final size:80
Alignment explanation
Indices: 44205534--44205778 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
44205524 GGACTAAGAT
* * * * * * * ** *
44205534 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
44205597 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
44205614 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
44205679 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
44205694 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
44205758 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
44205772 CCGAAGG
1 CCGAAGG
44205779 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:44211979 original size:40 final size:39
Alignment explanation
Indices: 44211948--44212157 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
44211938 GGACTAAGAT
* *
44211948 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
44211988 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
44212028 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
44212068 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
44212108 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
44212147 CCGAAGGCATT
1 CCGAAGGCATT
44212158 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:44212111 original size:120 final size:120
Alignment explanation
Indices: 44211895--44212157 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
44211885 TTGAATGCTG
* *
44211895 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
44211959 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
44212015 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
44212078 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
44212134 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
44212158 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:44212177 original size:79 final size:80
Alignment explanation
Indices: 44211948--44212192 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
44211938 GGACTAAGAT
* * * * * * * ** *
44211948 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
44212011 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
44212028 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
44212093 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
44212108 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
44212172 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
44212186 CCGAAGG
1 CCGAAGG
44212193 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:44215284 original size:20 final size:20
Alignment explanation
Indices: 44215259--44215298 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
44215249 ATGAAGTGAT
*
44215259 TGCATCTAGCTCCATGGTAC
1 TGCATCCAGCTCCATGGTAC
44215279 TGCATCCAGCTCCATGGTAC
1 TGCATCCAGCTCCATGGTAC
44215299 CAACAACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.28
Consensus pattern (20 bp):
TGCATCCAGCTCCATGGTAC
Found at i:44217819 original size:14 final size:15
Alignment explanation
Indices: 44217791--44217828 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
44217781 ATGTTTCACC
44217791 TCCTTCATT-CTCTTT
1 TCCTTC-TTCCTCTTT
44217806 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
44217820 TCCTTCTTC
1 TCCTTCTTC
44217829 TTGCCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.03, C:0.39, G:0.00, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:44219926 original size:46 final size:46
Alignment explanation
Indices: 44219874--44220043 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
44219864 GGCATCCGAA
44219874 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGA-
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAG
*** * *
44219920 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC-GAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGGAG
* *
44219967 CTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAG
44220013 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44220044 GCGAGTTACA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 62 0.60
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGGAG
Found at i:44220023 original size:93 final size:93
Alignment explanation
Indices: 44219864--44220035 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
44219854 AGGATATTTG
*
44219864 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGACTCGTTGAG
44219929 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
44219957 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGA-CTCGTTGA
44220021 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
44220036 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGGACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:44228423 original size:21 final size:21
Alignment explanation
Indices: 44228384--44228424 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
44228374 AGTTTTTTTT
*
44228384 TTCCTTTTTTTCTCTCTTTCC
1 TTCCTTTTTGTCTCTCTTTCC
44228405 TTCCTTTTTGTCATC-CTTTC
1 TTCCTTTTTGTC-TCTCTTTC
44228425 TAGTGTTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.63
Consensus pattern (21 bp):
TTCCTTTTTGTCTCTCTTTCC
Found at i:44241567 original size:68 final size:64
Alignment explanation
Indices: 44241419--44241567 Score: 176
Period size: 64 Copynumber: 2.3 Consensus size: 64
44241409 ATATAGTTCG
44241419 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCAACCTAGCAACATATATCCCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCAACCTAGCAACATATATCCCGTA
* * * *
44241483 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCAACCTAGC-A-A-CAT-ATATC
**
44241546 TTGTA
60 CCGTA
44241551 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
44241568 ATGTGCACTC
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
63 1 0.01
64 42 0.58
65 2 0.03
66 1 0.01
67 3 0.04
68 22 0.31
69 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCAACCTAGCAACATATATCCCGTA
Found at i:44258848 original size:27 final size:27
Alignment explanation
Indices: 44258818--44258995 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
44258808 ATATTGAGCC
* *
44258818 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
44258845 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
44258872 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
44258900 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
44258927 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
44258954 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
44258981 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44258996 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:44258930 original size:55 final size:54
Alignment explanation
Indices: 44258818--44258995 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
44258808 ATATTGAGCC
* * * * *
44258818 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
44258872 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
44258927 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
44258981 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44258996 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:44266695 original size:27 final size:27
Alignment explanation
Indices: 44266634--44266686 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
44266624 TCATACTTCT
44266634 CATAGGGGCATATCAGTCAATTTATCA
1 CATAGGGGCATATCAGTCAATTTATCA
*
44266661 CATAGGGGCATAAT-AGTCATTTTATC
1 CATAGGGGCAT-ATCAGTCAATTTATC
44266687 GGTTAGGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (27 bp):
CATAGGGGCATATCAGTCAATTTATCA
Found at i:44268160 original size:14 final size:14
Alignment explanation
Indices: 44268141--44268167 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
44268131 TATTAAGGCA
44268141 ATAATTAAGAACAC
1 ATAATTAAGAACAC
44268155 ATAATTAAGAACA
1 ATAATTAAGAACA
44268168 AGTCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:44270995 original size:46 final size:46
Alignment explanation
Indices: 44270872--44270999 Score: 188
Period size: 45 Copynumber: 2.8 Consensus size: 46
44270862 TGTAACCCGC
* * * *
44270872 CCATAAGTGAACTCAGACTCAACTCAAC-ACGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGA-GTTCGGACATTCGCAT
44270918 CCATAAGTGAACT-GGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
44270963 CCATAACTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44271000 TGGCCAAATA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
45 38 0.51
46 37 0.49
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44276369 original size:93 final size:93
Alignment explanation
Indices: 44276257--44276427 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
44276247 CCCATAAGTG
* *
44276257 AACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGT-TCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
44276321 CGAGCTCAGATGCCTAGTTACATCTCTCA
65 CGAGCTCAGATGCCTAGTTACATCTCTCA
44276350 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
* *
44276415 GAGTTCGGATGCC
66 GAGCTCAGATGCC
44276428 CAAATATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCAGATGCCTAGTTACATCTCTCA
Found at i:44276417 original size:46 final size:46
Alignment explanation
Indices: 44276248--44276423 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
44276238 TGTACCCCGC
* *
44276248 CCATAAGTGAACTCGGACTCAACTCAACGA-TCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACATTCGCAT
* * *
44276294 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
*
44276344 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
44276387 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
44276424 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 9, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 2 0.02
46 61 0.56
47 25 0.23
49 2 0.02
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:44284301 original size:49 final size:49
Alignment explanation
Indices: 44284237--44284428 Score: 215
Period size: 49 Copynumber: 3.9 Consensus size: 49
44284227 TAGCCAAAGC
* *
44284237 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
* * ** *
44284286 TATCTGGTACACATAGTAGCCTTCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC-AAT
* * * * *
44284336 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-T
* *
44284387 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
44284429 GACCTCACAA
Statistics
Matches: 117, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
49 42 0.36
50 39 0.33
51 35 0.30
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACCAAT
Found at i:44284356 original size:50 final size:49
Alignment explanation
Indices: 44284237--44284425 Score: 234
Period size: 50 Copynumber: 3.8 Consensus size: 49
44284227 TAGCCAAAGC
* * * **
44284237 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
44284286 TATCTGGTACACATAGTAGCCTTCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
44284336 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* *
44284387 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
44284426 TGCGACCTCA
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 40 0.34
50 44 0.37
51 35 0.29
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:44284433 original size:101 final size:99
Alignment explanation
Indices: 44284250--44284433 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 99
44284240 CTGGTACGCA
* *
44284250 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCTGGTACACATAGTAGCCTTCACTTA
1 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCGGGTACACATAGTAGCCTGCACTTA
*
44284315 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
44284349 TAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACATAGTACTACACA--TGCAACCAA-TTATCGGGTACACATAGTAGCCTGCAC
*
44284413 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
44284434 CACAATAGAT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 25 0.34
100 4 0.05
101 45 0.61
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:44288485 original size:49 final size:50
Alignment explanation
Indices: 44288424--44288539 Score: 155
Period size: 49 Copynumber: 2.3 Consensus size: 50
44288414 CTGGTACGCA
* * ** *
44288424 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCT-AGTATACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGA-TACACG
*
44288473 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
44288523 TAGTAGCCTGCACTTAG
1 TAGTAGCCTGCACTTAG
44288540 CCTGCACTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 30 0.51
50 28 0.47
51 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
Found at i:44288542 original size:11 final size:11
Alignment explanation
Indices: 44288526--44288550 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
44288516 ATACACGTAG
44288526 TAGCCTGCACT
1 TAGCCTGCACT
44288537 TAGCCTGCACT
1 TAGCCTGCACT
44288548 TAG
1 TAG
44288551 TACTACACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.28
Consensus pattern (11 bp):
TAGCCTGCACT
Found at i:44291025 original size:39 final size:41
Alignment explanation
Indices: 44290886--44291025 Score: 225
Period size: 40 Copynumber: 3.5 Consensus size: 41
44290876 TTTGGATGAC
44290886 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
44290926 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
* *
44290966 ATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
*
44291006 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
44291026 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGACTAT
Found at i:44298731 original size:13 final size:13
Alignment explanation
Indices: 44298715--44298739 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44298705 CAAAATCATG
44298715 TCGTGAAATTTTT
1 TCGTGAAATTTTT
44298728 TCGTGAAATTTT
1 TCGTGAAATTTT
44298740 CACAAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
TCGTGAAATTTTT
Found at i:44307468 original size:20 final size:20
Alignment explanation
Indices: 44307413--44307468 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
44307403 CGAAGTGTAG
*
44307413 ACAGAGGCA-CAAATGTGCAA
1 ACAGAGGCACCAAA-GTACAA
** **
44307433 TTAGAGGCACTGAAGTACAA
1 ACAGAGGCACCAAAGTACAA
44307453 ACAGAGGCACCAAAGT
1 ACAGAGGCACCAAAGT
44307469 GCAATCCCAT
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (20 bp):
ACAGAGGCACCAAAGTACAA
Found at i:44308906 original size:27 final size:27
Alignment explanation
Indices: 44308876--44308929 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
44308866 AATCATACTT
44308876 AACCTACTACTCAGAACAGTTCTAAAG
1 AACCTACTACTCAGAACAGTTCTAAAG
* *
44308903 AACCTACTGCTCAGAAGAGTTCTAAAG
1 AACCTACTACTCAGAACAGTTCTAAAG
44308930 TGGCCTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (27 bp):
AACCTACTACTCAGAACAGTTCTAAAG
Found at i:44309871 original size:31 final size:31
Alignment explanation
Indices: 44309836--44309894 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
44309826 TTACGAGCCT
*
44309836 AGGGGCCAAAGTGAAAATATGTAAAAGTTTA
1 AGGGGCCAAAATGAAAATATGTAAAAGTTTA
* * *
44309867 AGGGGTCAAAATGCAAATTTGTAAAAGT
1 AGGGGCCAAAATGAAAATATGTAAAAGT
44309895 ATGATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.44, C:0.07, G:0.25, T:0.24
Consensus pattern (31 bp):
AGGGGCCAAAATGAAAATATGTAAAAGTTTA
Found at i:44310377 original size:50 final size:50
Alignment explanation
Indices: 44310310--44310708 Score: 377
Period size: 50 Copynumber: 7.9 Consensus size: 50
44310300 TAAGACAGTT
* *
44310310 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCAGATTT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * ** * *
44310360 TTAGGTCACTTGTGTAGTACTAAATGCAGGCTACTATGCATACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
44310410 TTTCGATCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
44310461 TTAGGTCACGTGTGTAGTATTAATTACAAGCTACTACGTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * * * *
44310511 ATAGGTCGCATGTGTAGTACTAATTCCAGGCTACTATGCGTACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * *
44310562 TTTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
44310612 ATAAGTCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
44310662 ATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
44310709 GACCTTCAGT
Statistics
Matches: 279, Mismatches: 66, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
49 2 0.01
50 202 0.72
51 74 0.27
52 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:44310458 original size:101 final size:99
Alignment explanation
Indices: 44310314--44310708 Score: 360
Period size: 101 Copynumber: 3.9 Consensus size: 99
44310304 ACAGTTTTAG
* * * *
44310314 GTCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCAGATTTTTAGGTCACTTGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTA
* * * * * *
44310379 CTAAATGCAGGCTACTATGCATACCCGATAGTTTC
66 CTAAGTGCAAGCTACTACGCGTACCAGATAG-TTA
* * *
44310414 GATCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGT
1 G-TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGT
* * * * * * *
44310479 ATTAATTACAAGCTACTACGTGTACCGGATTGATA
65 ACTAAGTGCAAGCTACTACGCGTACCAGATAGTTA
* * * * * * * * *
44310514 GGTCGCATGTGTAGTACTAATTCCAGGCTACTATGCGTACCCG-TTAACTTTGATCACGTGTGTA
1 -GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACGTGTGTA
* * * * *
44310578 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAA
63 GTACTAAGTGCAAGCTACTACGCGTACCAGATAG-TTA
* * * * * *
44310616 GTCACGTGTGTAGTACTAAGTGCAGGCTGCTATGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTA
*
44310681 CTAAGTGCAAGCTACTATGCGTACCAGA
66 CTAAGTGCAAGCTACTACGCGTACCAGA
44310709 GACCTTCAGT
Statistics
Matches: 233, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
99 1 0.00
100 73 0.31
101 156 0.67
102 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGTAGTA
CTAAGTGCAAGCTACTACGCGTACCAGATAGTTA
Found at i:44310541 original size:151 final size:151
Alignment explanation
Indices: 44310264--44310705 Score: 589
Period size: 151 Copynumber: 2.9 Consensus size: 151
44310254 GTTGCGAGAA
* * * * * * *
44310264 CACATGTGTAGTACTATGTGCAGGATACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TG-GTTAGGTCACGTGTGTAGTA
** * *
44310329 CTAAGTGCAGGCTGCTACGTGTACCAGATTTTTAGGTCACTTGTGTAGTACTAAATGCAGGCTAC
64 CTAAGTGCAGGCTGCTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTAC
* *
44310394 TATGCATACCCGAT-AGTTTCGAT
129 TATGCGTACCCGATAACTTT-GAT
* *
44310417 CACATGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTATT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
* * * * * * *
44310482 AATTACAAGCTACTACGTGTACCGGATTGATAGGTCGCATGTGTAGTACTAATTCCAGGCTACTA
66 AAGTGCAGGCTGCTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTACTA
*
44310547 TGCGTACCCGTTAACTTTGAT
131 TGCGTACCCGATAACTTTGAT
* * *
44310568 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
* * *
44310633 AAGTGCAGGCTGCTATGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
66 AAGTGCAGGCTGCTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTACTA
44310698 TGCGTACC
131 TGCGTACC
44310706 AGAGACCTTC
Statistics
Matches: 251, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
151 211 0.84
152 5 0.02
153 35 0.14
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (151 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTGCTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTACTA
TGCGTACCCGATAACTTTGAT
Found at i:44311523 original size:180 final size:180
Alignment explanation
Indices: 44311267--44311625 Score: 524
Period size: 180 Copynumber: 2.0 Consensus size: 180
44311257 CCCGAGATCT
*
44311267 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTTAGACAGTGAAACAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTTAGACAGTAAAACAAGGGTA
* * * * *
44311332 TCTTCAATGAATAAACTGTACTAATTAGCTAAATC-AAAAATTTTTAAAATTTTATGGTAAGAAT
66 ACTTCAATGAATAAACTGTACTAATTAGATAAA-CAAAAAATTCTGAAAATTTTATGGAAAGAAT
* *
44311396 ATATGTGAGTCTAGTTTCAGGGAAAATTAGCGGTTCTTAATTTGGAGTTCC
130 ATATGTGAGTCTAGTTTCAGGGAAAATTAACGGATCTTAATTTGGAGTTCC
* * * * *
44311447 GTACCATGAGATATATAATTTTTAGTGAAGAGAG-TTAGGAACTGTTAGATAGTAAAATAGGGGT
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATT-GGAACTGTTAGACAGTAAAACAAGGGT
* *
44311511 AACTTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGAAAGAAT
65 AACTTCAATGAATAAACTGTACTAATTAGATAAACAAAAAATTCTGAAAATTTTATGGAAAGAAT
* * *
44311576 ATATTTGAGTCTAGTTTCTGTGAAAATTAACGGATCTTAATTTGGAGTTC
130 ATATGTGAGTCTAGTTTCAGGGAAAATTAACGGATCTTAATTTGGAGTTC
44311626 TGTAGATCTA
Statistics
Matches: 159, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
179 3 0.02
180 156 0.98
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.34
Consensus pattern (180 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTGTTAGACAGTAAAACAAGGGTA
ACTTCAATGAATAAACTGTACTAATTAGATAAACAAAAAATTCTGAAAATTTTATGGAAAGAATA
TATGTGAGTCTAGTTTCAGGGAAAATTAACGGATCTTAATTTGGAGTTCC
Found at i:44317094 original size:15 final size:15
Alignment explanation
Indices: 44317055--44317096 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
44317045 AATGTGTTTT
44317055 ATTATATTTTTATGG
1 ATTATATTTTTATGG
44317070 -TCTATATTTTTATGG
1 AT-TATATTTTTATGG
44317085 AATTAT-TTTTTA
1 -ATTATATTTTTA
44317097 AAGATTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.04
15 19 0.79
16 3 0.12
17 1 0.04
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (15 bp):
ATTATATTTTTATGG
Found at i:44318550 original size:50 final size:50
Alignment explanation
Indices: 44318477--44318924 Score: 398
Period size: 50 Copynumber: 8.9 Consensus size: 50
44318467 TAAGACAATT
44318477 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * * *
44318527 TTAGGTCGCATGTCTAGTACTAAGTACAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
44318577 TTTTGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCA-AATG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * *
44318627 TTTAGGTCATGTGTGTAGTACTAAGTGTAGGCAACTACGTGTACCGGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
44318678 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * ** * * * *
44318729 TTCGATCACGTGTGTAGTACTAAGTATAGGCTACTATGCGTACCCG-TTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * * * * *
44318780 TTCGATCACATGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
44318830 ATAAGTCACGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
44318880 ATAGGTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
44318925 TAGAGCTTCG
Statistics
Matches: 322, Mismatches: 71, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
49 2 0.01
50 198 0.61
51 121 0.38
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:44318611 original size:101 final size:100
Alignment explanation
Indices: 44318477--44318924 Score: 405
Period size: 101 Copynumber: 4.5 Consensus size: 100
44318467 TAAGACAATT
* * * * *
44318477 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTCT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGT
44318542 AGTACTAAGTACAGGCTACTATGCGTACCCGATAG
66 AGTACTAAGTACAGGCTACTATGCGTACCCGATAG
* * * * * *
44318577 TTTTGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCA-AATGTTTAGGTCATGTGT
1 -TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACGTGT
** * * * * *
44318641 GTAGTACTAAGTGTAGGCAACTACGTGTACCGGATTG
64 GTAGTACTAAGTACAGGCTACTATGCGTACCCGATAG
* * * * * * * *
44318678 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--GTTAGGTCACGTGT
* * *
44318742 GTAGTACTAAGTATAGGCTACTATGCGTACCCGTTAAC
64 GTAGTACTAAGTACAGGCTACTATGCGTACCCGAT-AG
* * * * * * *
44318780 TTCGATCACATGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGATAAGTCACGTGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGT
* * * * * *
44318845 AGTACTAAGTGCATGCTACTACGTGTACCAGATTG
66 AGTACTAAGTACAGGCTACTATGCGTACCCGATAG
* * * * * *
44318880 ATAGGTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
44318925 TAGAGCTTCG
Statistics
Matches: 270, Mismatches: 71, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
100 76 0.28
101 156 0.58
102 37 0.14
103 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACGTGTGT
AGTACTAAGTACAGGCTACTATGCGTACCCGATAG
Found at i:44318750 original size:151 final size:152
Alignment explanation
Indices: 44318476--44318865 Score: 485
Period size: 151 Copynumber: 2.6 Consensus size: 152
44318466 TTAAGACAAT
* * * *
44318476 TTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTC
1 TTTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTG
* ** * *
44318541 TAGTACTAAGTACAGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACTAAGTGCA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTACA
* * *
44318606 AGCTACTACGTGTATCAAAT-G
131 AGCTACTACGCGTACCAAATAA
* * *
44318627 TTTAGGTCATGTGTGTAGTACTAAGTGTAGGCAACTACGTGTACCGGATTGATAGGTCACATGTG
1 TTTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTG
* *
44318692 TAGTACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTATA
66 TAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTACA
* * ***
44318757 GGCTACTATGCGTACCCGTTAA
131 AGCTACTACGCGTACCAAATAA
* * * * * * * * *
44318779 CTTCGATCACATGTGTAGTACTAAGTGTAGGCTACTACATGTATCAGATGGATAAGTCACGTGTG
1 TTTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTG
*
44318844 TAGTACTAAGTGCATGCTACTA
66 TAGTACTAAGTGCAGGCTACTA
44318866 CGTGTACCAG
Statistics
Matches: 203, Mismatches: 35, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
151 129 0.64
152 74 0.36
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (152 bp):
TTTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGATAGGTCACATGTG
TAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTACA
AGCTACTACGCGTACCAAATAA
Found at i:44318799 original size:202 final size:201
Alignment explanation
Indices: 44318478--44318924 Score: 599
Period size: 202 Copynumber: 2.2 Consensus size: 201
44318468 AAGACAATTT
* * * * * *
44318478 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTCTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTCTTAGATCACATGTCTA
** * *
44318543 GTACTAAGTACAGGCTACTATGCGTACCCGATAGTTTTGATCACGTGTGTAGTACTAAGTGCAAG
66 GTACTAAGTACAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAG
* ** * * * *
44318608 CTACTACGTGTATCAAATGTTTAGGTCATGTGTGTAGTACTAAGTGTAGGCAACTACGTGTACCG
131 CTACTACATGTATCAAATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACCA
44318673 GATTGA
196 GATTGA
* * * *
44318679 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCACGTGTG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATT--CTTAGATCACATGTC
* * *
44318743 TAGTACTAAGTATAGGCTACTATGCGTACCCGTTAACTTCGATCACATGTGTAGTACTAAGTGTA
64 TAGTACTAAGTACAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCA
* * * *
44318808 GGCTACTACATGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGCATGCTACTACGTGTAC
129 AGCTACTACATGTATCAAATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTAC
44318873 CAGATTGA
194 CAGATTGA
* *
44318881 TAGGTCGCATGTGTAGTACTAAGTGAAGGCTACTATGCGTACCA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
44318925 TAGAGCTTCG
Statistics
Matches: 213, Mismatches: 31, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
200 2 0.01
201 41 0.19
202 170 0.80
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (201 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTCTTAGATCACATGTCTA
GTACTAAGTACAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAAG
CTACTACATGTATCAAATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGCAACTACGTGTACCA
GATTGA
Found at i:44319745 original size:180 final size:180
Alignment explanation
Indices: 44319486--44319836 Score: 558
Period size: 180 Copynumber: 1.9 Consensus size: 180
44319476 CCAAGATCTG
* * *
44319486 TACCATGAGATAAATAATTTTTAGTGAAGAAATATTGGAACTGTCAGACAGTGAAATAGGGGTAT
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTATCAGACAGTGAAATAGGGGTAC
*
44319551 TTTTAACCAATAAACTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
66 CTTTAACCAATAAACTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
* * * *
44319616 ATGTGAGTCTAGTTTCTGGGAAAATTAGCAGTTCTTAATTTCAATTTCCT
131 ATGTGAGTATAGTTTCTGAGAAAATTAACAGATCTTAATTTCAATTTCCT
* * **
44319666 TACCATGAGATAAATAATTTTTAGTGAAGAGAGGTTGGAACTATTGGACAGTGAAATAGGGGTAC
1 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTATCAGACAGTGAAATAGGGGTAC
** **
44319731 CTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGCAAATTTTATGGTAAGAATAT
66 CTTTAACCAATAAACTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
44319796 ATGTGAGTATAGTTTCTGAGAAAATTAACAGATCTTAATTT
131 ATGTGAGTATAGTTTCTGAGAAAATTAACAGATCTTAATTT
44319837 GGAGTTCCGT
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
180 155 1.00
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (180 bp):
TACCATGAGATAAATAATTTTTAGTGAAGAAAGATTGGAACTATCAGACAGTGAAATAGGGGTAC
CTTTAACCAATAAACTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATAT
ATGTGAGTATAGTTTCTGAGAAAATTAACAGATCTTAATTTCAATTTCCT
Found at i:44322728 original size:27 final size:29
Alignment explanation
Indices: 44322688--44322763 Score: 102
Period size: 27 Copynumber: 2.7 Consensus size: 29
44322678 CATACATGCT
* *
44322688 TATGGCCCACTAGGCCCAATTTA-TTC-A
1 TATGGCCCACTAGGCCCAATTCACATCTA
* *
44322715 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCCAATTCACATCTA
44322744 TATGGCCCACTAGGCCCAAT
1 TATGGCCCACTAGGCCCAAT
44322764 CACTTTTACA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 20 0.49
28 2 0.05
29 19 0.46
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAATTCACATCTA
Found at i:44322999 original size:8 final size:8
Alignment explanation
Indices: 44322986--44323031 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
44322976 GTAGCCAAAC
44322986 TTTCGGCT
1 TTTCGGCT
*
44322994 TTTCGGCA
1 TTTCGGCT
*
44323002 TTTCAGCT
1 TTTCGGCT
44323010 TTTCGG-T
1 TTTCGGCT
44323017 ATTTCGGCT
1 -TTTCGGCT
44323026 TTTCGG
1 TTTCGG
44323032 GATTTGCCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 1 0.03
8 30 0.94
9 1 0.03
ACGTcount: A:0.07, C:0.22, G:0.24, T:0.48
Consensus pattern (8 bp):
TTTCGGCT
Found at i:44323010 original size:16 final size:16
Alignment explanation
Indices: 44322986--44323036 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
44322976 GTAGCCAAAC
44322986 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
44323002 TTTCAGCTTTTCGGTA
1 TTTCGGCTTTTCGGCA
*
44323018 TTTCGGCTTTTCGGGA
1 TTTCGGCTTTTCGGCA
44323034 TTT
1 TTT
44323037 GCCAATCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:44326011 original size:40 final size:40
Alignment explanation
Indices: 44325917--44326061 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
44325907 TACTCGAATG
* *
44325917 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGAGACT
* *
44325958 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGAGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGAGACT
* * *
44325998 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACT
* *
44326038 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
44326062 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGAGACT
Found at i:44348957 original size:119 final size:120
Alignment explanation
Indices: 44348749--44348964 Score: 362
Period size: 119 Copynumber: 1.8 Consensus size: 120
44348739 GGCTAATTTC
44348749 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
* *
44348814 CGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATATCT
66 CAAGCTACTATAACCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATATCT
* * * *
44348869 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
*
44348933 CAAGTTACTATAACCGGGCTAAGTCCCGAAGG
66 CAAGCTACTATAACCGGGCTAAGTCCCGAAGG
44348965 CATTTAAGCT
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 55 0.62
120 34 0.38
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
CAAGCTACTATAACCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATATCT
Found at i:44348984 original size:40 final size:39
Alignment explanation
Indices: 44348707--44348969 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 39
44348697 CGGATGATAA
* * *
44348707 CCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
* *
44348747 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
44348787 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
** *
44348827 CCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
44348867 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
44348906 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
44348946 CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTT
44348970 AAGCTAGTGG
Statistics
Matches: 202, Mismatches: 17, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 36 0.18
40 161 0.80
41 5 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:44366701 original size:57 final size:57
Alignment explanation
Indices: 44366640--44366749 Score: 211
Period size: 57 Copynumber: 1.9 Consensus size: 57
44366630 AACAAGCCAA
*
44366640 AATGAAGAAGAAACTTATGTTTTCTTATTTTTATTATTATTTTAACCTTTATTCATT
1 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATTATTTTAACCTTTATTCATT
44366697 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATTATTTTAACCTTTATT
1 AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATTATTTTAACCTTTATT
44366750 TATTCCTTTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (57 bp):
AATGAAGAAGAAACTTATGTTTTCTTATTTTCATTATTATTTTAACCTTTATTCATT
Found at i:44373655 original size:13 final size:13
Alignment explanation
Indices: 44373637--44373661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44373627 AAGTAATCAC
44373637 ACACGGGCGTGTT
1 ACACGGGCGTGTT
44373650 ACACGGGCGTGT
1 ACACGGGCGTGT
44373662 CCTTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.40, T:0.20
Consensus pattern (13 bp):
ACACGGGCGTGTT
Found at i:44379642 original size:38 final size:37
Alignment explanation
Indices: 44379585--44379658 Score: 130
Period size: 38 Copynumber: 2.0 Consensus size: 37
44379575 GCCCAAGTTG
*
44379585 AGTCCAATTTAAAAAGGCTAATTTTGAGGGCTCTTAC
1 AGTCCAATTCAAAAAGGCTAATTTTGAGGGCTCTTAC
44379622 AGTCCAATTCAGAAAAGGCTAATTTTGAGGGCTCTTA
1 AGTCCAATTCA-AAAAGGCTAATTTTGAGGGCTCTTA
44379659 GGCATTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 10 0.29
38 25 0.71
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (37 bp):
AGTCCAATTCAAAAAGGCTAATTTTGAGGGCTCTTAC
Found at i:44382160 original size:31 final size:31
Alignment explanation
Indices: 44382117--44382195 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
44382107 TTTAACGGTT
44382117 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
44382148 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
44382179 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
44382196 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:44382484 original size:26 final size:26
Alignment explanation
Indices: 44382413--44382587 Score: 264
Period size: 26 Copynumber: 6.8 Consensus size: 26
44382403 CCTCTTTAAT
**
44382413 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
44382438 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
44382463 AACTGGGGCATAAGCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
44382489 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
44382515 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
44382541 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
44382567 AACTGGGGCATAAGCCATTTT
1 AACTGGGGCATAAGCCCTTTT
44382588 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
25 33 0.24
26 103 0.76
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:44382523 original size:52 final size:52
Alignment explanation
Indices: 44382413--44382587 Score: 318
Period size: 52 Copynumber: 3.4 Consensus size: 52
44382403 CCTCTTTAAT
44382413 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
44382463 AACTGGGGCATAAGCCTTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
44382515 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
44382567 AACTGGGGCATAAGCCATTTT
1 AACTGGGGCATAAGCCCTTTT
44382588 GCACTTCCTC
Statistics
Matches: 120, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 10 0.08
51 24 0.20
52 86 0.72
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:44383399 original size:27 final size:27
Alignment explanation
Indices: 44383369--44383452 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
44383359 GGGCATATTC
* *
44383369 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCCTACAAGGGCT-TTACG
*
44383396 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
44383423 GTCACTTTACCCTAC-AGGAGCTTTACG
1 GTCACTTTACCCTACAAGG-GCTTTACG
44383450 GTC
1 GTC
44383453 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 48 0.94
28 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAAGGGCTTTACG
Found at i:44383460 original size:27 final size:27
Alignment explanation
Indices: 44383391--44383452 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
44383381 TACAAGGGTA
*
44383391 TTACGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTACCCTACAGGAGCT
44383418 TTACGGTCACTTTACCCTACAGGAGCT
1 TTACGGTCACTTTACCCTACAGGAGCT
44383445 TTACGGTC
1 TTACGGTC
44383453 TTTTTACCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTACAGGAGCT
Found at i:44383544 original size:27 final size:27
Alignment explanation
Indices: 44383514--44383621 Score: 76
Period size: 27 Copynumber: 3.9 Consensus size: 27
44383504 GTAAATATAC
44383514 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
44383541 AAACAAATGGTATTTCCA-TAATTTT-T
1 AAACCAAGGGTATTT-CAGTAATTTTGT
* ** *
44383567 AGAAAGTCAAGGGTATTTTTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
44383597 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
44383622 ACAACTTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
26 1 0.02
27 39 0.61
28 8 0.12
29 15 0.23
30 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:44383634 original size:27 final size:27
Alignment explanation
Indices: 44383604--44383836 Score: 195
Period size: 27 Copynumber: 8.7 Consensus size: 27
44383594 TGTAAATCAG
44383604 GGGTATTTTGGTAATTTTAC-AACTTGA
1 GGGTATTTTGGTAATTTTACAAAC-TGA
* * *
44383631 GGGTATTTTGGTAACTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACTGA
* *
44383657 GTGGTATATTGGTAATTTTACAAACTAA
1 G-GGTATTTTGGTAATTTTACAAACTGA
* *
44383685 GGATATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTGA
** **
44383712 GGGTATTTCAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA
* * * *
44383739 AGGTATTTTAGCAATTTTACAGACT-A
1 GGGTATTTTGGTAATTTTACAAACTGA
* **
44383765 GGGTATTATGGTAATTTTACTGA-TCGA
1 GGGTATTTTGGTAATTTTACAAACT-GA
** **
44383792 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTGA
* *
44383819 TGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
44383837 GTAAATCGAT
Statistics
Matches: 164, Mismatches: 36, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.01
26 21 0.13
27 137 0.84
28 5 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTGA
Found at i:44383663 original size:54 final size:53
Alignment explanation
Indices: 44383493--44383836 Score: 213
Period size: 54 Copynumber: 6.4 Consensus size: 53
44383483 TCATCCTACA
* * * ** ** *
44383493 AGGGTGTTTTGGTAAATATACAAACCAAGGGTATTTCAGTAATTTTGTAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC-C
* *** * * * * ** *
44383547 ATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTTTGTAACTTTGTAAATC
1 AGGGTATTTTGGTAA-TTTTACAAA-CCAAGGGTATTTTGGTAATTTTACAAACC
** * *
44383602 AGGGGTATTTTGGTAATTTTAC-AACTTGAGGGTATTTTGGTAACTTCACAAACC
1 A-GGGTATTTTGGTAATTTTACAAAC-CAAGGGTATTTTGGTAATTTTACAAACC
* * * **
44383656 AGTGGTATATTGGTAATTTTACAAACTAAGGATATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAA-CC
** * * * * *
44383711 AGGGTATTTCAGTAATTTTACAAACCAAAGGTATTTTAGCAATTTTACAGACT
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACC
* ** * * **
44383764 AGGGTATTATGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACC
* *
44383817 AATGGTATTTTAGTAATTTT
1 -AGGGTATTTTGGTAATTTT
44383837 GTAAATCGAT
Statistics
Matches: 220, Mismatches: 62, Indels: 16
0.74 0.21 0.05
Matches are distributed among these distances:
53 40 0.18
54 130 0.59
55 17 0.08
56 33 0.15
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACC
Found at i:44383697 original size:81 final size:79
Alignment explanation
Indices: 44383607--44383805 Score: 236
Period size: 81 Copynumber: 2.5 Consensus size: 79
44383597 AAATCAGGGG
** * *
44383607 TATTTTGGTAATTTTACAACTTGAGGGTATTTTGGTAACTTCACAAACCAGTGGTATATTGGTAA
1 TATTTTGGTAATTTTACAA-TTGAGGGTATTTTGGTAACTTCACAAACCAAAGGTATATTAGCAA
44383672 TTTTACAAACTAAGGA
65 TTTTACAAACT-AGGA
** * * *
44383688 TATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAACCAAAGGTATTTTAGCAA
1 TATTTTGGTAATTTTAC-AATTGAGGGTATTTTGGTAACTTCACAAACCAAAGGTATATTAGCAA
* *
44383753 TTTTACAGACTAGGG
65 TTTTACAAACTAGGA
* * *
44383768 TATTATGGTAATTTTACTGATCGAGGGTATTTTGGTAA
1 TATTTTGGTAATTTTAC-AATTGAGGGTATTTTGGTAA
44383806 TTTTGTAAAC
Statistics
Matches: 100, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 35 0.35
81 63 0.63
82 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (79 bp):
TATTTTGGTAATTTTACAATTGAGGGTATTTTGGTAACTTCACAAACCAAAGGTATATTAGCAAT
TTTACAAACTAGGA
Found at i:44383837 original size:27 final size:27
Alignment explanation
Indices: 44383793--44383850 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
44383783 ACTGATCGAG
*
44383793 GGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTGTAAACCAAT
* *
44383820 GGTATTTTAGTAATTTTGTAAATCGAT
1 GGTATTTTAGTAATTTTGTAAACCAAT
44383847 GGTA
1 GGTA
44383851 AAACAGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTGTAAACCAAT
Found at i:44383858 original size:27 final size:27
Alignment explanation
Indices: 44383828--44383955 Score: 157
Period size: 27 Copynumber: 4.7 Consensus size: 27
44383818 ATGGTATTTT
* *
44383828 AGTAATTTTGTAAATCGATGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
44383855 AGTAATTCTGTAAATCAAGGTTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
44383882 AGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
44383909 GGTAATTCTGTAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
44383936 GGTAATTCTATAAATCGAGG
1 AGTAATTCTGTAAATCGAGG
44383956 ATACTTTGGT
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:44400624 original size:55 final size:54
Alignment explanation
Indices: 44400529--44400678 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
44400519 CTACTTTGTT
* ** * *
44400529 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
44400583 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
44400638 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
44400679 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:44400641 original size:27 final size:27
Alignment explanation
Indices: 44400501--44400678 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
44400491 TAAATTGTAC
44400501 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
44400528 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
44400554 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
44400582 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
44400610 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
44400637 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
44400664 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44400679 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:44400642 original size:82 final size:81
Alignment explanation
Indices: 44400502--44400657 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
44400492 AAATTGTACA
* * * *
44400502 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
44400567 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
44400583 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
44400646 TGTGCGAGTTGA
63 TGTGCGAATTGA
44400658 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:44408632 original size:55 final size:54
Alignment explanation
Indices: 44408537--44408686 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
44408527 CTACTTTGTT
* ** * *
44408537 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
44408591 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
44408646 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
44408687 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:44408649 original size:27 final size:27
Alignment explanation
Indices: 44408509--44408686 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
44408499 TAAATTGTAC
44408509 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
44408536 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
44408562 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
44408590 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
44408618 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
44408645 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
44408672 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44408687 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:44408650 original size:82 final size:81
Alignment explanation
Indices: 44408510--44408665 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
44408500 AAATTGTACA
* * * *
44408510 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
44408575 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
44408591 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
44408654 TGTGCGAGTTGA
63 TGTGCGAATTGA
44408666 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:44425668 original size:10 final size:10
Alignment explanation
Indices: 44425653--44425681 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
44425643 GTGTGGTGAT
44425653 GATCCTTGAC
1 GATCCTTGAC
44425663 GATCCTTGAC
1 GATCCTTGAC
44425673 GATCCTTGA
1 GATCCTTGA
44425682 GCTTGCAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (10 bp):
GATCCTTGAC
Found at i:44429029 original size:80 final size:79
Alignment explanation
Indices: 44428880--44429102 Score: 223
Period size: 80 Copynumber: 2.8 Consensus size: 79
44428870 TTGAATGCTG
* * * ** * * * * *
44428880 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
44428944 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * * *
44428960 TCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
44429025 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
44429040 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
44429103 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 35 0.30
80 79 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:44429084 original size:39 final size:40
Alignment explanation
Indices: 44428933--44429102 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
44428923 GGACTAAGAT
* * *
44428933 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
44428973 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
44429013 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
44429053 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
44429092 CCGAAGGCATT
1 CCGAAGGCATT
44429103 TGAACGAGGA
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 33 0.29
40 81 0.71
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:44429122 original size:79 final size:80
Alignment explanation
Indices: 44428955--44429137 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
44428945 GTGCGAGATA
* * * *
44428955 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
44429020 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
44429035 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
44429099 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
44429114 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
44429138 TACGTGAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 26 0.30
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:44432616 original size:46 final size:46
Alignment explanation
Indices: 44432501--44432712 Score: 189
Period size: 46 Copynumber: 4.5 Consensus size: 46
44432491 TATGAGAGTT
* * * * *
44432501 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC-TCGAGATGTAGGCC
* * * * *
44432549 AGAGTAA-AACACGTCTAGGACATGCATCGGCCTCGAGACGTAGGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTCGAGATGTAGGCC
* * *
44432595 AGTGTAAGA-CATATTTGGGACATGCATCGGCTACGAGATGATA-GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCT-CGAGATG-TAGGCC
* * *
44432641 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGT-GAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTCGAGATGTAG-GCC
44432688 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
44432713 GCATTGGCAC
Statistics
Matches: 134, Mismatches: 22, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
45 2 0.01
46 59 0.44
47 59 0.44
48 14 0.10
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTCGAGATGTAGGCC
Found at i:44432680 original size:47 final size:46
Alignment explanation
Indices: 44432455--44432712 Score: 195
Period size: 47 Copynumber: 5.5 Consensus size: 46
44432445 TGTGTGAGCT
* * * **
44432455 AGTGTAAGA-CATGTCTGGGACATGCATCGAC-CACATTATGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGCATCGACTC-GA-GATGATAGCC
* * * * *
44432501 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TCGAGATGATAGCC
* * * * * *
44432549 AGAGTAA-AACACGTCTAGGACATGCATCGGCCTCGAGACG-TAGGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGATGATA-GCC
* * * *
44432595 AGTGTAAGA-CATATTTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGATAGCC
* *
44432641 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATG-TGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGAT-AGCC
44432688 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
44432713 GCATTGGCAC
Statistics
Matches: 170, Mismatches: 30, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
45 4 0.02
46 63 0.37
47 75 0.44
48 27 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGATAGCC
Found at i:44448255 original size:28 final size:28
Alignment explanation
Indices: 44448201--44448256 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
44448191 TATTAACAAT
**
44448201 ACAGTCTGGGCCTAAGCCCAATGCAGTA
1 ACAGTCTGGGCCTAAGCCCAAAACAGTA
* * *
44448229 ACAGTGTGGGCCTATGTCCAAAACAGTA
1 ACAGTCTGGGCCTAAGCCCAAAACAGTA
44448257 TAATCACAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAACAGTA
Found at i:44448401 original size:23 final size:23
Alignment explanation
Indices: 44448375--44448429 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
44448365 ATCGCAGCGT
*
44448375 AGCTGCTAATAGAAATGCATCAA
1 AGCTGCTAATAGAAATGCAGCAA
* *
44448398 AGCTACTAATAGTAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
44448421 AGCTGCTAA
1 AGCTGCTAA
44448430 GAGCGGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (23 bp):
AGCTGCTAATAGAAATGCAGCAA
Found at i:44451976 original size:47 final size:47
Alignment explanation
Indices: 44451922--44452124 Score: 343
Period size: 47 Copynumber: 4.3 Consensus size: 47
44451912 TTAGGATTTT
** *
44451922 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
44451969 ATGTGATGAATGTGAACATGCATATATGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
44452016 ACGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
44452063 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
44452110 ATGTGATGAACGTGA
1 ATGTGATGAATGTGA
44452125 GTGTGACAGC
Statistics
Matches: 146, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 146 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:44453718 original size:29 final size:29
Alignment explanation
Indices: 44453685--44453758 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
44453675 GTTGTGAGAT
* *
44453685 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
44453714 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
44453743 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
44453759 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:44461762 original size:29 final size:29
Alignment explanation
Indices: 44461692--44461764 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
44461682 GTTGTGAGAT
* *
44461692 TGGCACTAGGTGTGCGAACTTGAAATGCA
1 TGGCACTAAGTGTGCGAACTTGAAATACA
* *
44461721 T-GCACTAAGTGTGCG-AGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAACTTGAAA-TACA
44461749 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
44461765 CGGTTGATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 6 0.16
28 17 0.45
29 15 0.39
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTGAAATACA
Found at i:44463639 original size:37 final size:37
Alignment explanation
Indices: 44463589--44463725 Score: 204
Period size: 37 Copynumber: 3.7 Consensus size: 37
44463579 ATTCCGGGTG
44463589 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
*
44463626 AGACCCGATGACTACGTGTGGAGATTATG-CCCGAGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAG-GTA
* *
44463663 AGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
* * *
44463700 AGACCTGATAACTTCGTGTGGAGATT
1 AGACCCGATGACTACGTGTGGAGATT
44463726 TCGTCTGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 3 0.03
37 85 0.93
38 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCAGGTA
Found at i:44465049 original size:40 final size:40
Alignment explanation
Indices: 44464994--44465425 Score: 722
Period size: 40 Copynumber: 10.8 Consensus size: 40
44464984 GAGAATTGAG
44464994 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
44465034 AGTGATATATTCGGGCTAAATCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
44465074 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
44465114 AGTGATGTATCCGGAC-AAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAA-TCCCGAAGAGCATTCGTGCT
44465154 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
44465194 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
44465234 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
44465274 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
44465314 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
44465354 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
44465394 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
44465426 ATCATGCTGG
Statistics
Matches: 367, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 3 0.01
40 361 0.98
41 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:44469150 original size:47 final size:47
Alignment explanation
Indices: 44469096--44469375 Score: 416
Period size: 47 Copynumber: 6.0 Consensus size: 47
44469086 TTAGGATTTT
** * * *
44469096 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGGATGGCCG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
44469143 ATGTGATGAATGTGAACATGCATATATGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
44469190 ACGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
44469237 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
44469284 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
44469331 ATATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
44469376 TAGTGTGAAA
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 211 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:44469597 original size:37 final size:37
Alignment explanation
Indices: 44469538--44469756 Score: 357
Period size: 37 Copynumber: 5.9 Consensus size: 37
44469528 GGAAATATAT
* *
44469538 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
44469575 TCCAGGTAAGACCCGATAACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
44469612 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
44469649 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
44469686 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
44469723 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
44469757 TCGTCTGAGC
Statistics
Matches: 170, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 170 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:44480557 original size:31 final size:31
Alignment explanation
Indices: 44480517--44480599 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
44480507 TCAGTCTCGA
44480517 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
44480547 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
44480578 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
44480600 ACTGTAAGCG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 18 0.35
31 34 0.65
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:44481720 original size:27 final size:27
Alignment explanation
Indices: 44481679--44481752 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 27
44481669 ATATTCGTCA
* *
44481679 TTTTACCATACAGGGGTATTACGGTCG
1 TTTTACCCTATAGGGGTATTACGGTCG
*
44481706 TTTTACCCTATAGGGGCT-TTACGGTCT
1 TTTTACCCTATAGGGG-TATTACGGTCG
44481733 TTTTA-CCTATTAGGGGTATT
1 TTTTACCCTA-TAGGGGTATT
44481753 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.41
Consensus pattern (27 bp):
TTTTACCCTATAGGGGTATTACGGTCG
Found at i:44481880 original size:27 final size:26
Alignment explanation
Indices: 44481839--44481962 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
44481829 GTATAAGTCA
**
44481839 AGGGTATTTCT-GTAATTTTGTAAATC
1 AGGGTATTT-TGGTAATTTTACAAATC
*
44481865 AGGAGTATTTTGGTAATTTTACAAATTG
1 AGG-GTATTTTGGTAATTTTACAAA-TC
*
44481893 AGGGTATTTTGGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAATC
* *
44481919 AGTGGTATTTTGGTAATTTTACGAACTA
1 AG-GGTATTTTGGTAATTTTAC-AAATC
44481947 AGGGTA-TTTGGTAATT
1 AGGGTATTTTGGTAATT
44481963 CTACCCTATA
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
26 17 0.20
27 59 0.69
28 9 0.11
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAATC
Found at i:44481908 original size:54 final size:54
Alignment explanation
Indices: 44481838--44481962 Score: 157
Period size: 54 Copynumber: 2.3 Consensus size: 54
44481828 GGTATAAGTC
*** *
44481838 AAGGGTATTTCT-GTAATTTTGTAAATCAG-GAGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTT-TGGTAATTTCACAAATCAGTG-GTATTTTGGTAATTTTACAAACT
* *
44481892 GAGGGTATTTTGGTAATTTCACAAATCAGTGGTATTTTGGTAATTTTACGAACT
1 AAGGGTATTTTGGTAATTTCACAAATCAGTGGTATTTTGGTAATTTTACAAACT
44481946 AAGGGTA-TTTGGTAATT
1 AAGGGTATTTTGGTAATT
44481963 CTACCCTATA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
53 11 0.18
54 50 0.81
55 1 0.02
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTCACAAATCAGTGGTATTTTGGTAATTTTACAAACT
Found at i:44482024 original size:27 final size:27
Alignment explanation
Indices: 44481982--44482085 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
44481972 AGGGGTATTT
44481982 CAGTAA-TTT-TACAATCGAGGGTAAAA
1 CAGTAATTTTGTA-AATCGAGGGTAAAA
*
44482008 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAA
* * *
44482035 TAGTAATTCTGTAAATCAAGGGTAAAA
1 CAGTAATTTTGTAAATCGAGGGTAAAA
*
44482062 CAGTAATTTTATAAATCGAGGGTA
1 CAGTAATTTTGTAAATCGAGGGTA
44482086 CTTTGGTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.07
27 60 0.90
28 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (27 bp):
CAGTAATTTTGTAAATCGAGGGTAAAA
Found at i:44482094 original size:27 final size:27
Alignment explanation
Indices: 44481850--44482107 Score: 125
Period size: 27 Copynumber: 9.6 Consensus size: 27
44481840 GGGTATTTCT
** *
44481850 GTAATTTTGTAAATC-AGGAGTATTTTG
1 GTAATTTTACAAATCGAGG-GTAATTTG
* *
44481877 GTAATTTTACAAATTGAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTAATTTG
* *
44481904 GTAATTTCACAAATC-AGTGGTATTTTG
1 GTAATTTTACAAATCGAG-GGTAATTTG
* *
44481931 GTAATTTTACGAA-CTAAGGGT-ATTTG
1 GTAATTTTACAAATC-GAGGGTAATTTG
* ** * *
44481957 GTAATTCTACCCTATAG-GGGT-ATTTCA
1 GTAATTTTA-CAAATCGAGGGTAATTT-G
***
44481984 GTAATTTTAC-AATCGAGGGTAAAACG
1 GTAATTTTACAAATCGAGGGTAATTTG
** ** *
44482010 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTACAAATCGAGGGTAATTTG
* ** * ****
44482037 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTTTACAAATCGAGGGTAATTTG
* *
44482064 GTAATTTTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTAATTTG
*
44482091 GTAATTTTACAAGTCGA
1 GTAATTTTACAAATCGA
44482108 AGGCATTTCT
Statistics
Matches: 183, Mismatches: 38, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
25 3 0.02
26 36 0.20
27 139 0.76
28 5 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTAATTTG
Found at i:44485346 original size:20 final size:20
Alignment explanation
Indices: 44485321--44485377 Score: 105
Period size: 20 Copynumber: 2.8 Consensus size: 20
44485311 ACGGGGTGAC
44485321 CACACGGGCTTGTCCCAATG
1 CACACGGGCTTGTCCCAATG
44485341 CACACGGGCTTGTCCCAATG
1 CACACGGGCTTGTCCCAATG
44485361 CACACGGGCTTGGTCCC
1 CACACGGGCTT-GTCCC
44485378 GAACCTTTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 31 0.86
21 5 0.14
ACGTcount: A:0.18, C:0.37, G:0.26, T:0.19
Consensus pattern (20 bp):
CACACGGGCTTGTCCCAATG
Found at i:44490672 original size:41 final size:41
Alignment explanation
Indices: 44490597--44490731 Score: 200
Period size: 41 Copynumber: 3.3 Consensus size: 41
44490587 TTTTTTGTTA
* * *
44490597 AAACGCCGCTAAA-AACAGAGCATTAGCAGTGCTTTTGGTG
1 AAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
*
44490637 AGACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
1 AAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
* *
44490678 AAACGCCGCTAAAGACTAGAGCATTAGCGGCGCTTTTGGTA
1 AAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
*
44490719 AAACGCCACTAAA
1 AAACGCCGCTAAA
44490732 ATTCATGTAA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 12 0.14
41 74 0.86
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTG
Found at i:44491374 original size:24 final size:24
Alignment explanation
Indices: 44491347--44491395 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
44491337 CATATATTTA
44491347 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
44491371 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
44491395 T
1 T
44491396 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:44491977 original size:14 final size:13
Alignment explanation
Indices: 44491928--44491979 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
44491918 TTAATTTTTT
44491928 TATTTATAAAAACCA
1 TATTTATAAAAA--A
44491943 -ATTTATAAAAAA
1 TATTTATAAAAAA
* *
44491955 TAGTAATAAAAAA
1 TATTTATAAAAAA
44491968 TATTTTATAAAA
1 TA-TTTATAAAA
44491980 TTACTTAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 12 0.39
14 18 0.58
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
TATTTATAAAAAA
Found at i:44495643 original size:19 final size:19
Alignment explanation
Indices: 44495620--44495666 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
44495610 ATTTAATCTA
*
44495620 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
44495638 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
44495658 ATTTTTATT
1 ATTTTTATT
44495667 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:44495775 original size:13 final size:12
Alignment explanation
Indices: 44495753--44495782 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
44495743 TGAATTTTAA
44495753 TTTTTTTTATTT
1 TTTTTTTTATTT
44495765 TTTTATTTTATTT
1 TTTT-TTTTATTT
44495778 TTTTT
1 TTTTT
44495783 AAATTTCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTTATTT
Found at i:44495850 original size:43 final size:43
Alignment explanation
Indices: 44495789--44495939 Score: 205
Period size: 43 Copynumber: 3.5 Consensus size: 43
44495779 TTTTAAATTT
* * * *
44495789 CATGACCTTTAGGGGCGTTT-TGGGGAAAAGCGTCGCTACAGGC
1 CATGAACTTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGC
*
44495832 CATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
1 CATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
* *
44495875 CATGAATTTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGC
1 CATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
* *
44495918 CATGAATTTTAGCGGCATTTGT
1 CATGAACTTTAGCGGCGTTTGT
44495940 TAGCGGCGTT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 98 0.99
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (43 bp):
CATGAACTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGC
Found at i:44495993 original size:56 final size:56
Alignment explanation
Indices: 44495883--44495993 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
44495873 GCCATGAATT
* * **
44495883 TTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGAATTTTAGCGGCATTTG
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGAACTTTAGCAACATTTG
*
44495939 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGACCTTTAGCAACATTT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGAACTTTAGCAACATTT
44495994 TTTTAAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (56 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGCCATGAACTTTAGCAACATTTG
Found at i:44497336 original size:30 final size:30
Alignment explanation
Indices: 44497290--44497349 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
44497280 TTCTCGAGCC
44497290 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
44497320 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
44497350 CATATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:44504911 original size:28 final size:26
Alignment explanation
Indices: 44504855--44504967 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
44504845 AGCATGGCTG
* *
44504855 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
44504881 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
44504909 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
44504936 CCAGATCAAATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
44504964 CCAG
1 CCAG
44504968 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.49
28 32 0.43
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:44504940 original size:55 final size:54
Alignment explanation
Indices: 44504855--44504967 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
44504845 AGCATGGCTG
* *
44504855 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAAATAATTCGTGGCAGAACCA
* * * *
44504909 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAAATAATTCGTGGCAGAACCA
44504964 CCAG
1 CCAG
44504968 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAAATAATTCGTGGCAGAACCA
Found at i:44505111 original size:25 final size:25
Alignment explanation
Indices: 44505069--44505116 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
44505059 GACAAAATTA
*
44505069 ACCTAGGGGCATATTGGTCATTTAC
1 ACCTAGGGGCATATTGGTAATTTAC
*
44505094 ACCTAGGGGTATCA-TGGTAATTT
1 ACCTAGGGGCAT-ATTGGTAATTT
44505117 TCCATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
ACCTAGGGGCATATTGGTAATTTAC
Found at i:44506410 original size:24 final size:24
Alignment explanation
Indices: 44506383--44506453 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
44506373 CTAGATTTCC
**
44506383 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
44506407 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
44506431 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
44506454 CTCCTGATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:44522866 original size:20 final size:20
Alignment explanation
Indices: 44522816--44522857 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
44522806 TTTAAAATTT
* *
44522816 TAAAAATATAAAAGTTAAAA
1 TAAAAAAATTAAAGTTAAAA
44522836 TAAAAAAATTAAAG-TAAAA
1 TAAAAAAATTAAAGTTAAAA
44522855 TAA
1 TAA
44522858 CCAAAATTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (20 bp):
TAAAAAAATTAAAGTTAAAA
Found at i:44527770 original size:27 final size:27
Alignment explanation
Indices: 44527732--44527784 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
44527722 TAAAATATGG
44527732 GTGGAGGGTACCCCACAGGCGGCACCA
1 GTGGAGGGTACCCCACAGGCGGCACCA
44527759 GTGGAGGGTACCCCACAGGCGGCACC
1 GTGGAGGGTACCCCACAGGCGGCACC
44527785 GCTGACTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.34, G:0.38, T:0.08
Consensus pattern (27 bp):
GTGGAGGGTACCCCACAGGCGGCACCA
Found at i:44529230 original size:285 final size:288
Alignment explanation
Indices: 44528523--44529645 Score: 1530
Period size: 285 Copynumber: 3.9 Consensus size: 288
44528513 ATCAGAGTTT
* * *
44528523 TTTTTTCTAAATTAATATAATATACTAAAATAATACATATGAAACATTATGTACTAAAATAATA-
1 TTTTTACTAAATTAATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT
*
44528587 AAAAAATAAAATACAAAAATAGTATATTTTGAAAAATAAAATCCGAAAATAAAATAAAAA-ACAA
66 AAAAAATAAAATACGAAAATAGTATATTTT-AAAAATAAAATCC---AATAAAATAAAAATACAA
* * *
44528651 ACGGCCAAAATCAGA-ATTTTTTACTAAATTAATATAAAAAAACTAAAATAATACCTTTGAAACA
127 ACGGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACA
*
44528715 TTATGTACTAAAATAATATAAAAAATAAAATATGAAAATAGTATATTTTAAAATAAAAAATCCGA
192 TTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAA-AAAAAATCCGA
* *
44528780 AAACAAAATAAA-AAAA-GGCCAAAACCACTGA
256 AAACAAAATAAATAAAACGGCCAAAATCACAGA
44528811 TTTTTACTAAATTAATATAAAAAACTAAAATAATAC--ATGAAACATTATGTACTAAAATAATAT
1 TTTTTACTAAATTAATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT
* * * * *
44528874 AAAAAACAAAATACGAAAATAATATATCTTAAAAAATAAAA-CC--TGAAAATAAAAATAAAAAA
66 AAAAAATAAAATACGAAAATAGTATAT-TTTAAAAATAAAATCCAAT-AAAATAAAAATACAAAC
*
44528936 GGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAATAACACATTTGAAACATT
129 GGCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATT
*
44529001 ATATACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAA
194 ATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGTATATTTTAAAAAA-AAAATCCGAA
44529066 AACAAAATAAATAAAACGGCCAAAATCACAGA
257 AACAAAATAAATAAAACGGCCAAAATCACAGA
*
44529098 TTTTTACTAAATTAATATAAAAAAACTAAAATAATA-A-ATGAAACATTATGTACTATAATAATA
1 TTTTTACTAAATTAATAT-AAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATA
* *
44529161 T-AAAAATAAAATACGAAAATAGTATATTTTAAAAATAAAATTC-A-AAAATAAAAATA-AAAGG
65 TAAAAAATAAAATACGAAAATAGTATATTTTAAAAATAAAATCCAATAAAATAAAAATACAAACG
* * * *
44529222 GCCAAAATCAGAGTTTTTTTTCTATATTCATATAAAAAAACTAAAATAATACATTTTAAATATTA
130 GCCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATTA
44529287 TGTACTAAAATAATATAAAAAACATAAAATACGAAAATAGTATA-TTT---AAAAAAAT---AAA
195 TGTACTAAAATAATAT-AAAAA-ATAAAATACGAAAATAGTATATTTTAAAAAAAAAATCCGAAA
* *
44529345 A-TAAA-AAAT-AAACGGCCAAAATCAGAG-
258 ACAAAATAAATAAAACGGCCAAAATCACAGA
* * *
44529372 TTTTTATTAAATTAATATAAAAAACTAAAATAATACATTTGGAACATTATGTACTAAAATAATAT
1 TTTTTACTAAATTAATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT
* * *
44529437 AAAAAATAAAATATGAAAATAGTTTATTTTAAAAAGTAAAATCCGAGAATAAAATAAAAAAACAA
66 AAAAAATAAAATACGAAAATAGTATATTTTAAAAA-TAAAATCC---AATAAAATAAAAATACAA
* * *
44529502 ACGGTCAAAATCAGAGTTTTTTAT-TAAATTAATATAAAAAAATACAAAAATAATACATTTGAAA
127 ACGGCCAAAATCAGAGTTTTTTTTCTAAATTAATAT-AAAAAA-ACTAAAATAATACATTTGAAA
* *
44529566 CATTATGTACTAAAATAATAT-AAAAATAAAATACGAAAATAATATATTTTAATAAATAAAATCC
190 CATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAA-AAAAAAAATCC
*
44529630 GAAAATAAAATAAATA
254 GAAAACAAAATAAATA
44529646 CCAAAATATA
Statistics
Matches: 748, Mismatches: 50, Indels: 70
0.86 0.06 0.08
Matches are distributed among these distances:
273 17 0.02
274 18 0.02
275 41 0.05
276 36 0.05
277 10 0.01
278 4 0.01
281 27 0.04
282 40 0.05
283 46 0.06
284 104 0.14
285 142 0.19
286 84 0.11
287 90 0.12
288 78 0.10
289 4 0.01
290 3 0.00
291 4 0.01
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (288 bp):
TTTTTACTAAATTAATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT
AAAAAATAAAATACGAAAATAGTATATTTTAAAAATAAAATCCAATAAAATAAAAATACAAACGG
CCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATACATTTGAAACATTAT
GTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAAAAATCCGAAAACA
AAATAAATAAAACGGCCAAAATCACAGA
Found at i:44529494 original size:150 final size:151
Alignment explanation
Indices: 44529337--44529643 Score: 457
Period size: 149 Copynumber: 2.1 Consensus size: 151
44529327 TATATTTAAA
* *
44529337 AAAATAAAATAAAAAATAAACGGCCAAAATCAGAG-TTTTTATTAAATTAATAT-AAAAA-ACTA
1 AAAATAAAA-AAAAAACAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAATACAA
* * * *
44529399 AAATAATACATTTGGAACATTATGTACTAAAATAATATAAAAAATAAAATATGAAAATAGTTTAT
65 AAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAATAAAATACGAAAATAATATAT
*
44529464 TTTAA-AAAGTAAAATCCGAGAAT
129 TTTAATAAA-TAAAATCCGAAAAT
*
44529487 AAAAT---AAAAAAACAAACGGTCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAAATACAA
1 AAAATAAAAAAAAAACAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATAT-AAAAAATACAA
44529549 AAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAATATATT
65 AAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAATATATT
44529614 TTAATAAATAAAATCCGAAAAT
130 TTAATAAATAAAATCCGAAAAT
44529636 AAAATAAA
1 AAAATAAA
44529644 TACCAAAATA
Statistics
Matches: 141, Mismatches: 8, Indels: 14
0.87 0.05 0.09
Matches are distributed among these distances:
146 23 0.16
147 19 0.13
149 51 0.36
150 48 0.34
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (151 bp):
AAAATAAAAAAAAAACAAACGGCCAAAATCAGAGTTTTTTATTAAATTAATATAAAAAATACAAA
AATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATAATATATTT
TAATAAATAAAATCCGAAAAT
Found at i:44534297 original size:27 final size:27
Alignment explanation
Indices: 44534266--44534443 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
44534256 TGAATTGTAC
44534266 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44534293 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44534319 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44534347 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44534375 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44534402 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44534429 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44534444 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44534380 original size:82 final size:81
Alignment explanation
Indices: 44534267--44534422 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
44534257 GAATTGTACA
* *
44534267 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
44534331 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
44534348 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
44534413 TGCGAGTTGA
65 TGCGAATTGA
44534423 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44534434 original size:82 final size:81
Alignment explanation
Indices: 44534263--44534443 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
44534253 GATTGAATTG
* *
44534263 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
44534328 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
44534344 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
44534408 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
44534426 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44534444 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:44542385 original size:27 final size:27
Alignment explanation
Indices: 44542354--44542531 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
44542344 TAAATTGTAC
44542354 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
44542381 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44542407 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
44542435 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
44542463 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
44542490 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
44542517 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44542532 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:44542468 original size:82 final size:81
Alignment explanation
Indices: 44542355--44542510 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
44542345 AAATTGTACA
* *
44542355 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
44542419 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
44542436 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
44542501 TGCGAGTTGA
65 TGCGAATTGA
44542511 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:44542522 original size:82 final size:81
Alignment explanation
Indices: 44542351--44542531 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
44542341 GATTAAATTG
* *
44542351 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
44542416 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
44542432 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
44542496 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
44542514 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
44542532 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:44545192 original size:44 final size:43
Alignment explanation
Indices: 44545054--44545199 Score: 146
Period size: 41 Copynumber: 3.4 Consensus size: 43
44545044 TTGGTATCTG
* *
44545054 ATGCTA-TGTGAAATATGTATGAGATA-GCATATGTGGTAAAGA
1 ATGCTAGTGTG-AATATGTATGAGATATGTATATGTGGTAACGA
* *
44545096 ATGGTCAATGTGAATAT-TATTGAG-T-TGTAT-TGT-GTAACCGA
1 ATGCT-AGTGTGAATATGTA-TGAGATATGTATATGTGGTAA-CGA
44545137 ATGGCTAGTGTGAATATGTATGAGATATGTATATGTGGTAAGCGA
1 AT-GCTAGTGTGAATATGTATGAGATATGTATATGTGGTAA-CGA
44545182 ATGCTAGTGTGAAT-TGTA
1 ATGCTAGTGTGAATATGTA
44545200 GGCGATGTGT
Statistics
Matches: 87, Mismatches: 6, Indels: 21
0.76 0.05 0.18
Matches are distributed among these distances:
40 4 0.05
41 21 0.24
42 15 0.17
43 19 0.22
44 19 0.22
45 9 0.10
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (43 bp):
ATGCTAGTGTGAATATGTATGAGATATGTATATGTGGTAACGA
Found at i:44564731 original size:40 final size:40
Alignment explanation
Indices: 44564676--44564857 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
44564666 ACTACTTGCT
*
44564676 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
44564716 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
44564756 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
44564795 CAAATGCCTTCGGGACTTAGCTCGGA-ATTAG-ACACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA-ACTCGCA
44564835 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
44564858 AGTTATCATC
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 41 0.31
40 91 0.69
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:44564785 original size:79 final size:80
Alignment explanation
Indices: 44564676--44564857 Score: 280
Period size: 79 Copynumber: 2.3 Consensus size: 80
44564666 ACTACTTGCT
* *
44564676 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
44564741 -ATATAGTA-ACTCGCA
66 AAT-TAG-ACACTAGCA
*
44564756 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
44564820 AATTAGACACTAGCG
66 AATTAGACACTAGCA
44564835 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
44564858 AGTTATCATC
Statistics
Matches: 94, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
78 1 0.01
79 69 0.73
80 24 0.26
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGACACTAGCA
Found at i:44566855 original size:54 final size:54
Alignment explanation
Indices: 44566796--44566902 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
44566786 ACTAAAAATT
* *
44566796 AATTATCTTTTCATATGGGATTCGAATGATGTTCTTGTTTGTTTCTTTTGAAAG
1 AATTATCTTTTCATATGGGATTCAAATGATGTTCCTGTTTGTTTCTTTTGAAAG
44566850 AATTATCTTTTCATATGGGATTCAAATGATGTTCCTGTTTGTTTCTTTTGAAA
1 AATTATCTTTTCATATGGGATTCAAATGATGTTCCTGTTTGTTTCTTTTGAAA
44566903 ATATACTCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (54 bp):
AATTATCTTTTCATATGGGATTCAAATGATGTTCCTGTTTGTTTCTTTTGAAAG
Found at i:44567813 original size:34 final size:34
Alignment explanation
Indices: 44567651--44567813 Score: 218
Period size: 34 Copynumber: 4.7 Consensus size: 34
44567641 GGTTTTCCTC
* * * *
44567651 ATGGAAAATGCCATACCTATGTTTCATAACTCAGT
1 ATGG-AAATACCATACCTACGTTTCATAGCTCGGT
* *
44567686 ATGGAAAATACCAGACCTACGTATCATAGCTCGGT
1 ATGG-AAATACCATACCTACGTTTCATAGCTCGGT
* *
44567721 GTGGAAATACCATACCTACGTATCATAGCTCGGT
1 ATGGAAATACCATACCTACGTTTCATAGCTCGGT
* *
44567755 ATGGAAATACCATACCTACATTTCATAGCTTGGT
1 ATGGAAATACCATACCTACGTTTCATAGCTCGGT
44567789 ATGGAAATACCATACCTACGTTTCA
1 ATGGAAATACCATACCTACGTTTCA
44567814 CATTTTTTCA
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
34 83 0.72
35 32 0.28
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (34 bp):
ATGGAAATACCATACCTACGTTTCATAGCTCGGT
Done.