Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 141 of 320
Found at i:46131832 original size:20 final size:20
Alignment explanation
Indices: 46131799--46131843 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
46131789 AGCACATGTA
* * *
46131799 TTCATAAAATTTTATAATTT
1 TTCATAAAAGTTTACAACTT
*
46131819 TTCATCAAAGTTTACAACTT
1 TTCATAAAAGTTTACAACTT
46131839 TTCAT
1 TTCAT
46131844 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAAGTTTACAACTT
Found at i:46138847 original size:40 final size:40
Alignment explanation
Indices: 46138792--46138913 Score: 167
Period size: 40 Copynumber: 3.0 Consensus size: 40
46138782 CGGATGATAA
* * *
46138792 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
46138832 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
46138872 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
46138912 CC
1 CC
46138914 AGAAAAATCC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 73 0.97
41 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:46146718 original size:40 final size:40
Alignment explanation
Indices: 46146663--46146866 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
46146653 CGGATGATAA
* * * *
46146663 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAATGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
46146703 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
46146743 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* **
46146783 CCAGGCTCGGTCCCGAAGGCATTTGTG-TGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAT
*
46146823 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
46146863 CCGG
1 CCGG
46146867 AAAAATCCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 143 0.97
41 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:46147653 original size:17 final size:18
Alignment explanation
Indices: 46147620--46147653 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
46147610 AAATCACTAA
*
46147620 AAATAGTAGAATGAATTT
1 AAATAGTAGAATAAATTT
46147638 AAATAGT-GAATAAATT
1 AAATAGTAGAATAAATT
46147654 ATGTAATCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (18 bp):
AAATAGTAGAATAAATTT
Found at i:46161299 original size:43 final size:43
Alignment explanation
Indices: 46161251--46161342 Score: 118
Period size: 43 Copynumber: 2.1 Consensus size: 43
46161241 AGTAATACCA
* *
46161251 TGGCATCGATATGTGATTCCGA-GTAAGACC-CTGTCTGGGACAG-
1 TGGCATCGATATGTGACTAC-ATGTAAGACCAC-GTCTGGGAC-GT
46161294 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
1 TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
46161337 TGGCAT
1 TGGCAT
46161343 TGTACGATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
42 2 0.05
43 41 0.93
44 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (43 bp):
TGGCATCGATATGTGACTACATGTAAGACCACGTCTGGGACGT
Found at i:46162980 original size:43 final size:43
Alignment explanation
Indices: 46162900--46162991 Score: 109
Period size: 43 Copynumber: 2.1 Consensus size: 43
46162890 AGTAAGGCCA
* * *
46162900 TGGCATCGATATGTGATTCCGAGTAAGACCCTGTCTGGGACAG-
1 TGGCATCGATATGTGACTACGAGTAAGACCCTATCTGGGAC-GT
46162943 TGGCATCGATATGTGACTAC-ATGTAAGACCAC-ATCTGGGACGT
1 TGGCATCGATATGTGACTACGA-GTAAGACC-CTATCTGGGACGT
46162986 TGGCAT
1 TGGCAT
46162992 TGTACGATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
42 2 0.05
43 40 0.93
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (43 bp):
TGGCATCGATATGTGACTACGAGTAAGACCCTATCTGGGACGT
Found at i:46164747 original size:42 final size:46
Alignment explanation
Indices: 46164684--46164848 Score: 144
Period size: 49 Copynumber: 3.6 Consensus size: 46
46164674 CTTTGTTTAC
** * * *
46164684 TCGATGTCATAGTTCAACTATGGTCTTATAC-AT-C-T-TCATATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
46164726 TCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC--AAT-ACATATCACATA
* * *
46164775 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATAACATATCTCA-C
1 TCGATGTCATAGCCCAGCTATGGTCTTACAC-AAT-ACATATCACATA
* * *
46164822 T-GATGCCATATCCCAGATATGGTCTTA
1 TCGATGTCATAGCCCAGCTATGGTCTTA
46164849 TACAGTAGCA
Statistics
Matches: 104, Mismatches: 12, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
42 27 0.26
45 2 0.02
46 24 0.23
47 2 0.02
48 13 0.12
49 36 0.35
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (46 bp):
TCGATGTCATAGCCCAGCTATGGTCTTACACAATACATATCACATA
Found at i:46164787 original size:49 final size:48
Alignment explanation
Indices: 46164725--46164895 Score: 179
Period size: 47 Copynumber: 3.6 Consensus size: 48
46164715 ATCTTCATAT
* *
46164725 ATCGATGTCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACA
1 ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
* * *
46164773 TATCGATGCCATAGCCCAGCTATGGTCTTACACG-AATAACATATCTCA
1 -ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
* * * * *
46164821 CT-GATGCCATATCCCAGATATGGTCTTATACAGT-AGCATATATCAC-
1 ATCGATGCCATAGCCCAGATATGGTCTTACAC-GTAATCACATATCACA
* * *
46164867 ACCAATGCCATATCCCAGATATGGTCTTA
1 ATCGATGCCATAGCCCAGATATGGTCTTA
46164896 TACGGAAATC
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 26 0.25
47 35 0.33
48 12 0.11
49 32 0.30
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATAGCCCAGATATGGTCTTACACGTAATCACATATCACA
Found at i:46165065 original size:31 final size:31
Alignment explanation
Indices: 46164921--46165053 Score: 194
Period size: 31 Copynumber: 4.3 Consensus size: 31
46164911 TCACTTGTAA
* *
46164921 CCGAAGTTACCACTATTCACTGATCAGGTAG
1 CCGAAGCTACCACTTTTCACTGATCAGGTAG
* *
46164952 CCGGAGCTACCATTTTTCACTGATCAGGTAG
1 CCGAAGCTACCACTTTTCACTGATCAGGTAG
* * *
46164983 TCGGAGCTACCATTTTTCACTGATCAGGTAG
1 CCGAAGCTACCACTTTTCACTGATCAGGTAG
*
46165014 CAGAAGCTACCACTTTTCACTGATCAGGTAG
1 CCGAAGCTACCACTTTTCACTGATCAGGTAG
46165045 CCGAAGCTA
1 CCGAAGCTA
46165054 TTACTTATCA
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 92 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (31 bp):
CCGAAGCTACCACTTTTCACTGATCAGGTAG
Found at i:46169089 original size:17 final size:17
Alignment explanation
Indices: 46169067--46169099 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46169057 CGAATGAGTT
46169067 CAAAATTTCTTGGTACG
1 CAAAATTTCTTGGTACG
46169084 CAAAATTTCTTGGTAC
1 CAAAATTTCTTGGTAC
46169100 ACATATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
CAAAATTTCTTGGTACG
Found at i:46174041 original size:40 final size:40
Alignment explanation
Indices: 46173997--46174079 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
46173987 AGTTCTGTAC
* *
46173997 ATAGCCGAAGCTATCTTAAAT-AGCACACTAAGTGCCATAT
1 ATAGCCGAAGCTATATTAAATCA-CACACTAAGTGCCACAT
*
46174037 ATAGCCGAAGCTATATTGAATCACACACTAAGTGCCACAT
1 ATAGCCGAAGCTATATTAAATCACACACTAAGTGCCACAT
46174077 ATA
1 ATA
46174080 TCTAATTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (40 bp):
ATAGCCGAAGCTATATTAAATCACACACTAAGTGCCACAT
Found at i:46176726 original size:42 final size:42
Alignment explanation
Indices: 46176679--46176840 Score: 181
Period size: 42 Copynumber: 3.9 Consensus size: 42
46176669 TGTGATTTCG
46176679 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTCA
* *
46176721 TGTAAGACCATGTCTGGGACATTAGCATCGATATGAGATTCG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTCA
* * *
46176763 TATAAGACCATAGT-TGGG-CTATTGGCATCGATAT-ACTATAACA
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATATGA-GAT-TCA
* * *
46176806 TGTAAGACCATATCTGGGATA-TGGCATTG-TATGAG
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATGAG
46176841 TTATACGAGA
Statistics
Matches: 101, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
41 5 0.05
42 78 0.77
43 18 0.18
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATGAGATTCA
Found at i:46187880 original size:46 final size:45
Alignment explanation
Indices: 46187830--46188005 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
46187820 TGGTTGAGCA
46187830 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
46187876 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
46187923 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
46187969 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46188006 GCGAGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:46187986 original size:93 final size:93
Alignment explanation
Indices: 46187827--46187997 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
46187817 GGATGGTTGA
* *
46187827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46187892 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
46187920 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46187985 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46187998 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46191304 original size:24 final size:23
Alignment explanation
Indices: 46191271--46191316 Score: 83
Period size: 24 Copynumber: 2.0 Consensus size: 23
46191261 AATGAATCGA
46191271 CAAAAGCCAAAATGCCGAAAAGT
1 CAAAAGCCAAAATGCCGAAAAGT
46191294 CAAAACGCCAAAATGCCGAAAAG
1 CAAAA-GCCAAAATGCCGAAAAG
46191317 CCTAAAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.52, C:0.24, G:0.17, T:0.07
Consensus pattern (23 bp):
CAAAAGCCAAAATGCCGAAAAGT
Found at i:46191588 original size:29 final size:29
Alignment explanation
Indices: 46191546--46191651 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
46191536 ATAATATGAT
* *
46191546 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATAAATGTGAA
* *
46191575 TTGGGCCTAGTGGGCCATAAAAATATGAA
1 TTGGGCCTAGTGGGCCATATAAATGTGAA
* * *
46191604 CTGGGCC-AGATGGGCCATATAAATGAG-T
1 TTGGGCCTAG-TGGGCCATATAAATGTGAA
* *
46191632 TTGGGCCCAGTGGGTCATAT
1 TTGGGCCTAGTGGGCCATAT
46191652 GCATGTATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
28 17 0.27
29 47 0.73
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATAAATGTGAA
Found at i:46191946 original size:26 final size:26
Alignment explanation
Indices: 46191913--46191963 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46191903 GCCATAATTA
* *
46191913 AGGG-AAAATTACCGAAATACCCCTG
1 AGGGAAAAATGACCAAAATACCCCTG
46191938 AGGGTAAAAATGACCAAAATACCCCT
1 AGGG-AAAAATGACCAAAATACCCCT
46191964 AGGTGTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.18
27 18 0.82
ACGTcount: A:0.43, C:0.24, G:0.18, T:0.16
Consensus pattern (26 bp):
AGGGAAAAATGACCAAAATACCCCTG
Found at i:46192731 original size:16 final size:17
Alignment explanation
Indices: 46192700--46192732 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46192690 TTTAAGAAGA
46192700 GTTTTCAATGAAAACAC
1 GTTTTCAATGAAAACAC
*
46192717 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
46192733 TTCAATGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (17 bp):
GTTTTCAATGAAAACAC
Found at i:46201474 original size:39 final size:39
Alignment explanation
Indices: 46201387--46201475 Score: 133
Period size: 39 Copynumber: 2.3 Consensus size: 39
46201377 AGCTTATGGG
* * *
46201387 TAAGTTGTGTATCAGCAAAGCTCCTTTGTGAGCTAAGAA
1 TAAGTTGTGTACCAGCAAAGCTCCCTTGTAAGCTAAGAA
*
46201426 TAAGATGTGTACCAGCAAAGCTCCCTTGTAAGCTAAGAA
1 TAAGTTGTGTACCAGCAAAGCTCCCTTGTAAGCTAAGAA
*
46201465 TAATTTGTGTA
1 TAAGTTGTGTA
46201476 TTAGTGAAGC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (39 bp):
TAAGTTGTGTACCAGCAAAGCTCCCTTGTAAGCTAAGAA
Found at i:46208600 original size:27 final size:27
Alignment explanation
Indices: 46208570--46208747 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46208560 ATATTGAGTC
* * * *
46208570 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46208597 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46208624 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46208652 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46208679 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46208706 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46208733 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46208748 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46208709 original size:82 final size:81
Alignment explanation
Indices: 46208591--46208746 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46208581 TGCTATATAA
* *
46208591 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46208656 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46208673 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46208737 CACTTAGTGC
65 CACTTAGTGC
46208747 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46209246 original size:12 final size:12
Alignment explanation
Indices: 46209229--46209254 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46209219 ATGGCATACT
46209229 TATGTATATATA
1 TATGTATATATA
46209241 TATGTATATATA
1 TATGTATATATA
46209253 TA
1 TA
46209255 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:46216711 original size:27 final size:27
Alignment explanation
Indices: 46216681--46216858 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46216671 ATATTGAGTC
* * * *
46216681 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46216708 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46216735 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46216763 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46216790 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46216817 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46216844 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46216859 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46216820 original size:82 final size:81
Alignment explanation
Indices: 46216702--46216857 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46216692 TGCTATATAA
* *
46216702 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46216767 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46216784 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46216848 CACTTAGTGC
65 CACTTAGTGC
46216858 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46217357 original size:12 final size:12
Alignment explanation
Indices: 46217340--46217365 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46217330 ATGGCATACT
46217340 TATGTATATATA
1 TATGTATATATA
46217352 TATGTATATATA
1 TATGTATATATA
46217364 TA
1 TA
46217366 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:46229830 original size:37 final size:37
Alignment explanation
Indices: 46229769--46229847 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
46229759 ATATTACGAA
* * *
46229769 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
46229806 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
46229843 GTCTT
1 GTCTT
46229848 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:46230236 original size:49 final size:47
Alignment explanation
Indices: 46229966--46230455 Score: 752
Period size: 47 Copynumber: 10.4 Consensus size: 47
46229956 CCCTTCGGGA
* * * * * * * *
46229966 CTTATCACATTTATGCACTTTCACGTCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46230013 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46230060 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46230107 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46230154 CTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46230201 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46230250 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46230299 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46230346 CTTATCACATATATACACTTTCACATTCATCACATC-GCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46230392 CTTATCAC--ACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46230437 CTTATCACATATATACACT
1 CTTATCACATATATACACT
46230456 GTCTTGGCTG
Statistics
Matches: 410, Mismatches: 28, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
44 25 0.06
45 17 0.04
46 16 0.04
47 257 0.63
49 95 0.23
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46233873 original size:40 final size:40
Alignment explanation
Indices: 46233803--46233959 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
46233793 CGAATACACG
* * * * *
46233803 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATAAA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
46233843 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
46233883 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
46233923 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
46233960 TTAGTAACTC
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:46233984 original size:40 final size:40
Alignment explanation
Indices: 46233816--46234038 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
46233806 CCAGCATGAT
* * *
46233816 TGCTCTTCGGGATTTAGCACGGATAAATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
46233856 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
46233896 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * * *
46233936 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
46233977 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
* *
46234017 AGC-CTTCGGGACTTAGCTCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
46234039 CATCATTCGA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 133 0.86
41 19 0.12
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:46234024 original size:120 final size:120
Alignment explanation
Indices: 46233808--46234038 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 120
46233798 ACACGTCACC
* * * *
46233808 AGCATGATTGCTCTTCGGGATTTAGCACGGATAAATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCACGGATAAATAACTAGCACCAATGCTCTTCGGAACTTAG
* *
46233873 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
66 CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
* * * * *
46233928 AGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTA
1 AGCATGAATGCTCTTCGGGACTTAGCACGGA-TAAATAACTAGCACCAATGCTCTTCGGAACTTA
* ** *
46233992 GTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCTCGGA
65 GCCCGGATA-CATCAC-TAGCATCAAAGCTCTTCGGGACTTAGCCCGGA
46234039 CATCATTCGA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
120 65 0.70
121 23 0.25
122 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AGCATGAATGCTCTTCGGGACTTAGCACGGATAAATAACTAGCACCAATGCTCTTCGGAACTTAG
CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
Found at i:46234386 original size:29 final size:29
Alignment explanation
Indices: 46234347--46234425 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
46234337 CTTAATAATC
*
46234347 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46234377 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46234406 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46234426 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46236379 original size:37 final size:37
Alignment explanation
Indices: 46236329--46236407 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46236319 TTATTACGAA
* *
46236329 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
46236366 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
46236403 GTCTT
1 GTCTT
46236408 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:46236604 original size:47 final size:47
Alignment explanation
Indices: 46236527--46236826 Score: 438
Period size: 47 Copynumber: 6.4 Consensus size: 47
46236517 CCTTCGGGAG
* * * * * * * * *
46236527 TTATCACATTTATGCACTTTCACGTCCATCACGTTGACCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
46236574 CTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
46236621 TTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
46236668 TTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
46236715 TTATCTCATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
46236762 TTATCTCACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
46236809 TTATCACATATATACACT
1 TTATCACATATATACACT
46236827 GTCTTGGCTG
Statistics
Matches: 230, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:46240339 original size:43 final size:43
Alignment explanation
Indices: 46240235--46240343 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 43
46240225 GACTTATGAT
* *
46240235 TTACATGTAAGACCATGTCTGGGACATCGACATCGTATTTGAC
1 TTACATGTAAGACCATGTTTGGGACATAGACATCGTATTTGAC
** * * *
46240278 TT-TGTGTAAAACCCTGTTTGGGACAATAG-CATCGATATTTG-G
1 TTACATGTAAGACCATGTTTGGGAC-ATAGACATCG-TATTTGAC
46240320 TTACATGTAAGACCATGTTTGGGA
1 TTACATGTAAGACCATGTTTGGGA
46240344 TGTTGGCATT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
42 24 0.46
43 28 0.54
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTTTGGGACATAGACATCGTATTTGAC
Found at i:46246593 original size:29 final size:29
Alignment explanation
Indices: 46246561--46246625 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
46246551 GGCCGAACGA
*
46246561 GCCATATAGATGTGATTTGGGCCTAATGG
1 GCCATATAGAGGTGATTTGGGCCTAATGG
** *
46246590 GCCATATCTAGGTGATTTGGGCCTAGTGG
1 GCCATATAGAGGTGATTTGGGCCTAATGG
46246619 GCCATAT
1 GCCATAT
46246626 GAATACGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.31
Consensus pattern (29 bp):
GCCATATAGAGGTGATTTGGGCCTAATGG
Found at i:46246635 original size:29 final size:29
Alignment explanation
Indices: 46246574--46246645 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
46246564 ATATAGATGT
* **
46246574 GATTTGGGCCTAATGGGCCATATCTAGGT
1 GATTTGGGCCTAATGGGCCATATCAAGAC
* * *
46246603 GATTTGGGCCTAGTGGGCCATATGAATAC
1 GATTTGGGCCTAATGGGCCATATCAAGAC
*
46246632 GA-TTGGGCTTAATG
1 GATTTGGGCCTAATG
46246646 AGCTAGATAC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (29 bp):
GATTTGGGCCTAATGGGCCATATCAAGAC
Found at i:46250770 original size:43 final size:43
Alignment explanation
Indices: 46250675--46250784 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
46250665 GACTTATGAT
* *
46250675 TTACATGTAAGACCATGTATGGGACATCGGAATCATATTTGAC
1 TTACATGTAAGACCCTGTCTGGGACATCGGAATCATATTTGAC
* * *
46250718 TT-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCAATATTTG-G
1 TTACATGTAAGACCCTGTCTGGGACA-TCGGAATC-ATATTTGAC
46250760 TTACATGTAAGACCAC-GTCTGGGAC
1 TTACATGTAAGACC-CTGTCTGGGAC
46250785 CTTGCATTGT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
42 27 0.47
43 29 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGACATCGGAATCATATTTGAC
Found at i:46256787 original size:47 final size:46
Alignment explanation
Indices: 46256632--46256948 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 46
46256622 TGGGATATAT
* * * **
46256632 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTG-A
* * * * *
46256682 TGCTGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT-T-A
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTGA
* * *
46256727 -GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT-GA
*
46256773 GGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTG-
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTGA
* **
46256821 T--CGATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GA
1 TGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTGA
* * * *
46256866 TGCCGATGCAATGTCCTAGGCATGGTCTTACACTGG--ATCTCATAATGT
1 TGCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATCTC-T-GTGA
*
46256914 TGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGC
46256949 GCACAAATCA
Statistics
Matches: 215, Mismatches: 33, Indels: 41
0.74 0.11 0.14
Matches are distributed among these distances:
43 5 0.02
44 32 0.15
45 9 0.04
46 22 0.10
47 82 0.38
48 33 0.15
49 17 0.08
50 15 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTGA
Found at i:46256880 original size:94 final size:91
Alignment explanation
Indices: 46256632--46256948 Score: 293
Period size: 94 Copynumber: 3.4 Consensus size: 91
46256622 TGGGATATAT
* * * *
46256632 TGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCATGCTGATGCATGTCC
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TCT--GGATGCCGATGCATGTCC
* * *
46256697 CAAACATGTCTTACACTAGCA--CAACTCT-
61 CAGACATGTCTTACACTGGCACTCATCTCTG
* * * * *
46256725 TAGCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTCTGTCGAGGCCGATGCATGTCCCA
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTG--GATGCCGATGCATGTCCCA
46256790 GACATGTCTTACACTGGCACTCATCTCTG
63 GACATGTCTTACACTGGCACTCATCTCTG
* * * *
46256819 TGTCGATGCCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGATGCCGATGCAATGTCCTA
1 TGCCGATG-CATGTCCCAGACATGTCTTACACTGGCTCTC-TCTGGATGCCGATGC-ATGTCCCA
* **
46256884 GGCATGGTCTTACACTGG-ATCTCAT-AATG
63 GACAT-GTCTTACACTGGCA-CTCATCTCTG
*
46256913 TTGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 -TGCCGATGCATGTCCCAGACATGTCTTACACTGGC
46256949 GCACAAATCA
Statistics
Matches: 185, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
89 1 0.01
91 35 0.19
92 15 0.08
93 34 0.18
94 73 0.39
95 27 0.15
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (91 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCTGGATGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCACTCATCTCTG
Found at i:46256935 original size:141 final size:137
Alignment explanation
Indices: 46256631--46256948 Score: 342
Period size: 141 Copynumber: 2.3 Consensus size: 137
46256621 ATGGGATATA
* *
46256631 TTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATATACGCATGCTGATGCATGTC
1 TTGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATACG-ATGCTGATGCATGTC
* *
46256696 CCAAACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCTAGACACGTCTTACACTGGC
63 CCAAACATGTCTTACACTAGCACAACTCTGAGCCGATGCATGTCCTAGACACGTCTTACACTGGC
*
46256761 TATCTCTGTCG
128 -ATCTCTATCG
** *
46256772 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCT-CTG-TG-TCGATGCCATGTC
1 TTGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATAC-GATGCT-GATG-CATGTC
* ** * *
46256834 CCAGACATGTCTTACACTAGC-CCTCGTCTGGATGCCGATGCAATGTCCTAGGCATGGTCTTACA
63 CCAAACATGTCTTACACTAGCACAAC-TCT-GA-GCCGATGC-ATGTCCTAGACA-CGTCTTACA
46256898 CTGG-ATCTCATAAT-G
123 CTGGCATCTC-T-ATCG
*
46256913 TTGCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 TTGCCGATGCATGTCCCAGACATGTCTTACACTGGC
46256949 GCACAAATCA
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
136 1 0.01
137 8 0.05
138 30 0.20
139 20 0.13
140 27 0.18
141 52 0.34
142 13 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (137 bp):
TTGCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATACGATGCTGATGCATGTCCCA
AACATGTCTTACACTAGCACAACTCTGAGCCGATGCATGTCCTAGACACGTCTTACACTGGCATC
TCTATCG
Found at i:46264196 original size:51 final size:51
Alignment explanation
Indices: 46264112--46264251 Score: 158
Period size: 51 Copynumber: 2.7 Consensus size: 51
46264102 CGGATACCCG
*
46264112 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACC-TCTTACACAAA
* * * * *
46264163 GTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
* * * *
46264214 GTGGCCTGCACTTAGTATCACACATGTGATCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
46264252 TCAGGTACAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
50 4 0.05
51 69 0.93
52 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACCTCTTACACAAA
Found at i:46269063 original size:794 final size:794
Alignment explanation
Indices: 46267490--46269077 Score: 2777
Period size: 794 Copynumber: 2.0 Consensus size: 794
46267480 AATTCCAATA
46267490 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
1 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
46267555 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
66 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
46267620 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
131 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
*
46267685 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGAATAAATCGT
196 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGAATAAATCGC
46267750 GTAAAGTTCAAAAGTCTTGAATTGCAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGGG
261 GTAAAGTTCAAAAGTCTTGAATTGCAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGGG
*
46267815 TCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGTAGGCCATAGGAGACATAATATGGAGAA
326 TCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGAA
* * * *
46267880 AGTCAAAATAAGGTAGAAGTTTGGTAGCTTATTTGACCAAAATGGAATAAAATAAAGAAAAAGGG
391 AGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAGG
* * * *
46267945 GTGTCATCTTTTTCTCACCTTCTTGACCACCAAAATTTACTAGAAAAAATAGGGTTTAGAAGCTT
456 GTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGATT
46268010 GAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTTT
521 GAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTTT
*
46268075 TGTATTTTTGGACCCCTTGTAGCATGAGCTTTCAAAAGAGGGGACTATAAAATGGTTGAAAGTTT
586 TGTATTTTTGGACCCCTTGTAGCATGAGCTTTCAAAAGAGGGGACTACAAAATGGTTGAAAGTTT
* * * * *
46268140 AGGATCTTGCCATTATAGTAAACATGTTGTTTTCTGAAATTTTATGGATGAATATGAGTTAGTTT
651 AGGATCTTGCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTAGTTT
* *
46268205 TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCGTTTTGCATAA
716 TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCATTCTGCATAA
46268270 GTTAAGAATTAGAT
781 GTTAAGAATTAGAT
46268284 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
1 TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
*
46268349 ATATAGCATAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
66 ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
46268414 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
131 ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
*
46268479 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGACTAAATCGC
196 CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGAATAAATCGC
*
46268544 GTAAAGTTCAAAAGTCTTGAATTGATAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
261 GTAAAGTTCAAAAGTCTTGAATTG-CAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGG
* * * *
46268609 GTCTTTAAAGGGAAAATAGATCCTTGGATAGGTGATGGCCGGCCATAGGATACGTAATATGGAGA
325 GTCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGA
* *
46268674 AAGTTAAAATTAGGTAAAAGTTTGGTA-CTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
390 AAGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAG
* *
46268738 GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGCAAAAATAGGTTTTAAAAGAT
455 GGTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGAT
*
46268803 TGAAAAATTTCAGCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
520 TGAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTT
* *** *
46268868 TTGTATTTTTGGACCTCTTGTAGCATGAGCTTTCAAAAGA-GGTTTTGCAAAATGGTTGAAAGTT
585 TTGTATTTTTGGACCCCTTGTAGCATGAGCTTTCAAAAGAGGGGACTACAAAATGGTTGAAAGTT
*
46268932 TAGGATCTTTCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTA-TT
650 TAGGATCTTGCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTAGTT
* * *
46268996 GTTGTGAAATAAACAAGTTTTGTGAAGTAGTTTTCATTGAAACGCTAACTAGGGACCATTCTGCA
715 -TTGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTA-GGACCATTCTGCA
46269061 TAAGTTAAGAATTAGAT
778 TAAGTTAAGAATTAGAT
46269078 GATAAATGTG
Statistics
Matches: 752, Mismatches: 39, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
792 2 0.00
793 122 0.16
794 505 0.67
795 123 0.16
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (794 bp):
TAGACCACCACTTTGGTAAGGGGGTGAGGTCATAAGTCCCTAACTTGACTATCATATACATATAT
ATATAGCACAACTTTCATTGTAACAGCCCGATTATGGGCCAAGTCGGATCAATGGTTTTGAGACC
ACTAATCTGAGGTCAGAGAAAGTATTTTATTATTATTTTAGAGTTATAACATTTTTATAATAATG
CATGAAAAATTTGGTAAAGAAATTTTAGCGTTTGTGAGCTTAATCGCGAAAAAGGAATAAATCGC
GTAAAGTTCAAAAGTCTTGAATTGCAGCTAAGGGTGTTAAATTGCCATGAAACTTAAATTGGGGG
TCTTTAAAGGGAAAATAGACCCTTGGATAGGTGATGGCAGGCCATAGGAGACATAATATGGAGAA
AGTCAAAATAAGGTAAAAGTTTGGTAGCTTATTTGACCAAAATGAAAAAAAATAAAGAAAAAAGG
GTGTCATCTTTTTCTCACCTTCTTCACCACCAAAATTTACGAGAAAAAATAGGGTTTAAAAGATT
GAAAAATTTCACCCACTCTTTACCTTCACAAGTAAGTGATTTTGATAGTTTTTCTTGATGATTTT
TGTATTTTTGGACCCCTTGTAGCATGAGCTTTCAAAAGAGGGGACTACAAAATGGTTGAAAGTTT
AGGATCTTGCCATGATAGTAAACATATTATTTTCTAAAATTTTATGGAGGAATATGAGTTAGTTT
TGTGAAATAAACAAGTTTTGTGAAGTAGTCTTCATGGAAACCCTAACTAGGACCATTCTGCATAA
GTTAAGAATTAGAT
Found at i:46269777 original size:48 final size:46
Alignment explanation
Indices: 46269569--46269779 Score: 182
Period size: 46 Copynumber: 4.6 Consensus size: 46
46269559 TGATATATGT
* * * *
46269569 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CATCGAGATGAAA
* * *
46269615 GCCAGTGTAAGACATG--T--GACATGCATCAACCTCGAGAT-ATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGA---AA
* * * * *
46269659 GCCAATGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGAAA
* *
46269705 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATGGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAT-GA-AA
* *
46269753 GCTAGTGTAAGACTTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
46269780 GCGTCACCTT
Statistics
Matches: 132, Mismatches: 22, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 14 0.11
44 17 0.13
46 53 0.40
47 2 0.02
48 43 0.33
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGATGAAA
Found at i:46276918 original size:46 final size:47
Alignment explanation
Indices: 46276864--46276983 Score: 163
Period size: 48 Copynumber: 2.6 Consensus size: 47
46276854 TGTATGCTAC
*
46276864 TGTAAGACATGTTTGGGACATGCATCGG-CCAAAATA-TGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGACCAAAATATTGA-AGCCAA
* * * *
46276910 TGTAAGACATGTCTGGGACATGCATCGGTATCGAGATATTTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-ACCAAAATATTGAAGCCAA
46276958 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
46276984 AGCGTTGAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 27 0.41
48 37 0.56
49 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGACCAAAATATTGAAGCCAA
Found at i:46276967 original size:48 final size:46
Alignment explanation
Indices: 46276864--46277029 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
46276854 TGTATGCTAC
* * * *
46276864 TGTAAGACATGTTTGGGACATGCATCGG-CCAAAATATGAGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGTTCGAGATAT-AGAGCCAA
46276910 TGTAAGACATGTCTGGGACATGCATCGGTATCGAGATATTTA-AGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGT-TCGAGATA--TAGAGCCAA
* * *
46276958 TGTAAGACATGTCTGGGACATGCATCAGCGTT-GAGACA-AGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATC-G-GTTCGAGATATAGAGCCAA
46277004 TGTAAGACATGTCTGGGACATGCATC
1 TGTAAGACATGTCTGGGACATGCATC
46277030 AGCCTCGCAA
Statistics
Matches: 106, Mismatches: 7, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
45 1 0.01
46 57 0.54
48 42 0.40
49 3 0.03
50 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGTTCGAGATATAGAGCCAA
Found at i:46280542 original size:13 final size:13
Alignment explanation
Indices: 46280524--46280550 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46280514 TTCAGATCAC
46280524 ATAGTTCCTAGTG
1 ATAGTTCCTAGTG
46280537 ATAGTTCCTAGTG
1 ATAGTTCCTAGTG
46280550 A
1 A
46280551 CATGTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (13 bp):
ATAGTTCCTAGTG
Found at i:46294134 original size:40 final size:40
Alignment explanation
Indices: 46294077--46294156 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
46294067 GTGTGTGTGC
46294077 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
1 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
*
46294117 TGGCCATGATCCTTTTTAATGGTATCTTTGTTGTGGTTTT
1 TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
46294157 AGTAGATATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.12, C:0.14, G:0.23, T:0.51
Consensus pattern (40 bp):
TGGCCATGATCCCTTTTAATGGTATCTTTGTTGTGGTTTT
Found at i:46294257 original size:20 final size:21
Alignment explanation
Indices: 46294221--46294264 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
46294211 TAGGTTTGGT
46294221 AAAAACAAATAGTTTTTAAGG
1 AAAAACAAATAGTTTTTAAGG
46294242 AAAAACAAATAGTTTTTAAGG
1 AAAAACAAATAGTTTTTAAGG
46294263 AA
1 AA
46294265 TGAATGGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (21 bp):
AAAAACAAATAGTTTTTAAGG
Found at i:46295612 original size:14 final size:14
Alignment explanation
Indices: 46295593--46295621 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46295583 GGGGGTTGAG
46295593 GTTTTCCAAAGTCA
1 GTTTTCCAAAGTCA
46295607 GTTTTCCAAAGTCA
1 GTTTTCCAAAGTCA
46295621 G
1 G
46295622 ACTTCTGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (14 bp):
GTTTTCCAAAGTCA
Found at i:46300897 original size:47 final size:47
Alignment explanation
Indices: 46300843--46301200 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
46300833 TATTTGAATA
46300843 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46300890 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46300937 AATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46300986 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46301033 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46301080 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
46301127 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46301174 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46301201 TCTCGAAGGG
Statistics
Matches: 295, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 250 0.85
49 45 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46302690 original size:40 final size:40
Alignment explanation
Indices: 46302614--46303041 Score: 666
Period size: 40 Copynumber: 10.8 Consensus size: 40
46302604 GAGAATTGAG
46302614 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46302653 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
46302693 AGTGATTTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
46302733 AGTGATGTATCCGGGCTAAGTCTTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46302773 AGTGATGTATCCGGGCTAAGTCCC-AAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46302812 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46302851 AGTGATGTATCC-GGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46302890 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
46302930 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * **
46302970 AATGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
46303010 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
46303042 ATCAATCTGG
Statistics
Matches: 361, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
38 10 0.03
39 113 0.31
40 238 0.66
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:46307116 original size:47 final size:47
Alignment explanation
Indices: 46307061--46307371 Score: 523
Period size: 47 Copynumber: 6.6 Consensus size: 47
46307051 TATTTGAATA
*
46307061 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46307108 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
46307157 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46307204 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46307251 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
46307298 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46307345 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46307372 TCCCGAAGGG
Statistics
Matches: 253, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 207 0.82
49 46 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46312275 original size:29 final size:29
Alignment explanation
Indices: 46312243--46312325 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
46312233 TTTCAGCCTA
46312243 ATGGGCCATATGAATATGAATTGGGCATG
1 ATGGGCCATATGAATATGAATTGGGCATG
* *
46312272 ATGGGCCATATGAATGTGAATTGGGCCTG
1 ATGGGCCATATGAATATGAATTGGGCATG
46312301 ATGGGCCATAT-AA-ATGAGATTGGGC
1 ATGGGCCATATGAATATGA-ATTGGGC
46312326 CAAGTGGGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
27 3 0.06
28 9 0.18
29 38 0.76
ACGTcount: A:0.29, C:0.12, G:0.33, T:0.27
Consensus pattern (29 bp):
ATGGGCCATATGAATATGAATTGGGCATG
Found at i:46312333 original size:28 final size:29
Alignment explanation
Indices: 46312243--46312337 Score: 108
Period size: 29 Copynumber: 3.3 Consensus size: 29
46312233 TTTCAGCCTA
46312243 ATGGGCCATATGAATATGA-ATTGGG-CATG
1 ATGGGCCATAT-AA-ATGAGATTGGGCCATG
* *
46312272 ATGGGCCATATGAATGTGAATTGGGCC-TG
1 ATGGGCCATATAAATGAG-ATTGGGCCATG
*
46312301 ATGGGCCATATAAATGAGATTGGGCCAAG
1 ATGGGCCATATAAATGAGATTGGGCCATG
46312330 -TGGGCCAT
1 ATGGGCCAT
46312338 TTGCATGTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
27 3 0.05
28 17 0.30
29 36 0.63
30 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (29 bp):
ATGGGCCATATAAATGAGATTGGGCCATG
Found at i:46319567 original size:29 final size:29
Alignment explanation
Indices: 46319532--46319671 Score: 131
Period size: 29 Copynumber: 4.9 Consensus size: 29
46319522 TGAATATAAG
* * *
46319532 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* ** * *
46319561 GTGATTTCAGTCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
46319590 ATGAATTGGGCGTGATGGGCCATATTAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
46319619 GTGAATTGGGCCTGATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
*
46319648 GAG-ATTGGGCC-AATTGGGCCATAT
1 GTGAATTGGGCCTAA-TGGGCCATAT
46319672 GCATGTATGT
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
27 1 0.01
28 18 0.20
29 72 0.79
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:46322181 original size:18 final size:18
Alignment explanation
Indices: 46322158--46322193 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
46322148 GAGATGGTTG
46322158 GAGTTGATAAAAGACTAT
1 GAGTTGATAAAAGACTAT
*
46322176 GAGTTGATAATAGACTAT
1 GAGTTGATAAAAGACTAT
46322194 CACCCAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.31
Consensus pattern (18 bp):
GAGTTGATAAAAGACTAT
Found at i:46325245 original size:49 final size:49
Alignment explanation
Indices: 46325191--46325320 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
46325181 TGTAATATGT
* * *
46325191 CAGTGTAAGACTTGTTTGGGACATGACATCGACACCGA-TAGATGAGAGC
1 CAGTGTAAGACATGTTTGGGACATGGCATCGAC-CCGACTAGATGAAAGC
* * ** *
46325240 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTTACTATATGAAAGC
1 CAGTGTAAGACATGTTTGGGACATGGCATCGACCCGACTAGATGAAAGC
*
46325289 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGA-CATGTTTGGGACATGGCATCG
46325321 GCATCTTAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
48 2 0.03
49 49 0.70
50 19 0.27
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACATGTTTGGGACATGGCATCGACCCGACTAGATGAAAGC
Found at i:46326599 original size:39 final size:39
Alignment explanation
Indices: 46326544--46326728 Score: 280
Period size: 39 Copynumber: 4.7 Consensus size: 39
46326534 TTCCAACCCA
* * * *
46326544 AATGCCTTCGGAACTTATCCCGGATATAACATCAGCATG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
*
46326583 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * * * *
46326622 AATGCATTTGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
46326661 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
46326700 AATGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
46326729 ATCTCACACA
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 133 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
Found at i:46336078 original size:47 final size:47
Alignment explanation
Indices: 46335854--46336399 Score: 768
Period size: 47 Copynumber: 11.4 Consensus size: 47
46335844 CAGCCAAGAG
46335854 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
46335901 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
46335950 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
46336001 AGTGTATGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
46336052 AGTGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
46336099 AGTGTATATGTGTGATGAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
46336146 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
46336193 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
46336240 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
46336287 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
46336334 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
46336381 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
46336400 TCCCGAAAGG
Statistics
Matches: 463, Mismatches: 30, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 327 0.71
49 43 0.09
51 89 0.19
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:46336574 original size:37 final size:37
Alignment explanation
Indices: 46336518--46336596 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
46336508 CTGAGCTCTA
* * * *
46336518 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGG
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
* *
46336555 AAGACCCAATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
46336592 AAGAC
1 AAGAC
46336597 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGG
Found at i:46339173 original size:39 final size:39
Alignment explanation
Indices: 46339118--46339341 Score: 304
Period size: 39 Copynumber: 5.7 Consensus size: 39
46339108 TTCCAACCCA
* * * *
46339118 AATGCCTTCGGAACTTAGCCAGGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * *
46339157 AATGCCTTTGGGACTTAGCCCGGATATAATATTAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* * *
46339196 AATGCCTTCGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* *
46339235 AATGCCTTTGGGACTTAACCCGGATATAATATCAGTACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
* ***
46339274 AATGCCTTTGGGACTTAACTTTGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
46339313 AATGCCTTCGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
46339342 ATCTCACACA
Statistics
Matches: 163, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 163 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATATAATATCAGCACG
Found at i:46341273 original size:15 final size:15
Alignment explanation
Indices: 46341253--46341286 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
46341243 CAGATCAAAG
46341253 CATGAAACTTTCACA
1 CATGAAACTTTCACA
46341268 CATGAAACTTTCACA
1 CATGAAACTTTCACA
46341283 CATG
1 CATG
46341287 CATTTACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.26
Consensus pattern (15 bp):
CATGAAACTTTCACA
Found at i:46350951 original size:40 final size:39
Alignment explanation
Indices: 46350862--46351012 Score: 178
Period size: 40 Copynumber: 3.8 Consensus size: 39
46350852 TGGATGAAAA
* * ** * *
46350862 CCGGGCTAAGTCTCGAAGGCATCTGCACTAGTGACTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
46350901 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
46350941 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* *
46350981 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
46351013 AGTTATATCC
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 29 0.30
40 64 0.66
41 2 0.02
42 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46359501 original size:13 final size:13
Alignment explanation
Indices: 46359483--46359528 Score: 85
Period size: 13 Copynumber: 3.6 Consensus size: 13
46359473 CTTAGCACAT
46359483 GCCCGTGTCTATA
1 GCCCGTGTCTATA
46359496 GCCCGTGTCTATA
1 GCCCGTGTCTATA
46359509 GCCCGTGTCTAT-
1 GCCCGTGTCTATA
46359521 GCCCGTGT
1 GCCCGTGT
46359529 ATAAAAACCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 8 0.24
13 25 0.76
ACGTcount: A:0.11, C:0.33, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCCGTGTCTATA
Found at i:46366163 original size:48 final size:48
Alignment explanation
Indices: 46366092--46366364 Score: 314
Period size: 48 Copynumber: 5.6 Consensus size: 48
46366082 AGGGTAAGAT
* * * * *
46366092 GCCGATGTCATGCTCCAAG-CATGGCCTTACAGTAGCCCACATATCGAG
1 GCCGATGCCATG-TCCCAGACATGGTCTTACACTAGCCCACATATCAAG
*
46366140 GCCGATGCAATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* *
46366188 GCCAATGCCATGTCCCAGACATGGTCTTACACTAGCCCAAATATCAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* * * * *
46366236 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
* * * * * * * * *
46366284 ACCGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATACCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-C-CACATATCAAG
46366334 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
46366365 ATGGCTCACA
Statistics
Matches: 192, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 5 0.03
48 154 0.80
50 33 0.17
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACATATCAAG
Found at i:46377064 original size:48 final size:48
Alignment explanation
Indices: 46377003--46377282 Score: 280
Period size: 48 Copynumber: 5.8 Consensus size: 48
46376993 TCAATGCCAT
* *
46377003 TGCCATGTTCCAAACATGGTCTTATACTAGCCCACATATCGAGGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
**
46377051 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCCAA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
* *
46377099 TGCCATGTCCCAAACATGGTCTTACACTAGCCTACATATCAAGG-TCGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCT-GA
* * * * ***
46377147 TGCCATGTCCCAGACATGGTCTTACAC-AGGCTCTCATAT-AAATATCGA
1 TGCCATGTCCCAAACATGGTCTTACACTA-GCCCACATATCGAGGCT-GA
* * * * *
46377195 TGCCATGTTCCAAACATGGTCTGACACTGGCTCTCATATATTG-GTGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCGAG-GCTGA
* * * *
46377245 TGTCATGTCCCAAACATAGTCTTACACTGGCTCACATA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATA
46377283 ACCCTAGTAT
Statistics
Matches: 193, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.02
48 155 0.80
50 34 0.18
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (48 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCTGA
Found at i:46377129 original size:96 final size:96
Alignment explanation
Indices: 46376948--46377282 Score: 334
Period size: 96 Copynumber: 3.4 Consensus size: 96
46376938 AGGGTAAGAT
* ** * * * *
46376948 GCTGATGTCATGTTTCAAACATGGCCTTACACTGGCTCTCATATATCAATGCCATTGCCATGTTC
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGC-C-CACATATCAATGCCAATGCCATGTTC
*
46377013 CAAACATGGTCTTATACTAGCCCACATATCGAG
64 CAAACATGGTCTTACACTAGCCCACATATCGAG
* * *
46377046 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCGAGGCCAATGCCATGTCCCA
1 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAATGCCAATGCCATGTTCCA
* *
46377111 AACATGGTCTTACACTAGCCTACATATCAAG
66 AACATGGTCTTACACTAGCCCACATATCGAG
* * * * ** *
46377142 G-TCGATGCCATGTCCCAGACATGGTCTTACAC-AGGCTCTCATATAAATATCGATGCCATGTTC
1 GCT-GATGCCATGTCCCAAACATGGTCTTACACTA-GCCCACATATCAATGCCAATGCCATGTTC
* * * *
46377205 CAAACATGGTCTGACACTGGCTCTCATATATTG-G
64 CAAACATGGTCTTACACTAGC-C-CACATATCGAG
* * * *
46377239 TGCTGATGTCATGTCCCAAACATAGTCTTACACTGGCTCACATA
1 -GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATA
46377283 ACCCTAGTAT
Statistics
Matches: 196, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
95 2 0.01
96 119 0.61
97 3 0.02
98 71 0.36
99 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (96 bp):
GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAATGCCAATGCCATGTTCCA
AACATGGTCTTACACTAGCCCACATATCGAG
Found at i:46381143 original size:40 final size:40
Alignment explanation
Indices: 46381053--46381315 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
46381043 TTGAATGCTG
* * * * * *
46381053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * * *
46381093 TCTGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
46381133 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
46381173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
46381213 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
46381253 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
46381292 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
46381316 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:46381335 original size:79 final size:80
Alignment explanation
Indices: 46381106--46381350 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
46381096 GGATTAAGAT
* * * * * ** * *
46381106 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
46381170 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
46381186 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
46381251 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
46381266 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
46381330 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
46381344 CCGAAGG
1 CCGAAGG
46381351 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:46392040 original size:16 final size:16
Alignment explanation
Indices: 46392021--46392051 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46392011 CTTCTTCACT
46392021 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
46392037 TACTTACTTACTTAA
1 TACTCACTTACTTAA
46392052 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:46392057 original size:20 final size:20
Alignment explanation
Indices: 46392018--46392057 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46392008 AAACTTCTTC
* *
46392018 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
46392038 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
46392058 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:46392445 original size:55 final size:52
Alignment explanation
Indices: 46392300--46392497 Score: 184
Period size: 55 Copynumber: 3.7 Consensus size: 52
46392290 AACTTACAAT
46392300 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATGAACTCACCAA
* * * * * **
46392353 TGCCATGCCTTGGCATGGTCATACATGGGA-CCTTTGCCTTATAGTAACTTATTAA
1 TGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G-AACTCACCAA
* *
46392408 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG-AA-CTCACCAA
* * *
46392462 TTTCCATTTCTTGGCATGGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACAT-GTATCCTT
46392498 AAACCTTAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 38 0.32
54 8 0.07
55 67 0.57
56 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATGAACTCACCAA
Found at i:46395818 original size:33 final size:34
Alignment explanation
Indices: 46395781--46395875 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 34
46395771 CAAGTTGCCA
46395781 AATAAGACCATAGCTGGGCTATGGCAAT-CGAAT
1 AATAAGACCATAGCTGGGCTATGGCAATGCGAAT
** * * *
46395814 AATAAGACCATAATTCGGTTATGGC-ATGTGAAT
1 AATAAGACCATAGCTGGGCTATGGCAATGCGAAT
*
46395847 AA-AAGACCATAGCAGGGCCT-TGGCAATGC
1 AATAAGACCATAGCTGGG-CTATGGCAATGC
46395876 ATGTCTAAGA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
32 17 0.35
33 31 0.65
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (34 bp):
AATAAGACCATAGCTGGGCTATGGCAATGCGAAT
Found at i:46401724 original size:44 final size:47
Alignment explanation
Indices: 46401661--46401880 Score: 230
Period size: 51 Copynumber: 4.6 Consensus size: 47
46401651 TGAGGTCACG
46401661 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-GT-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTCGTCA
* * * *
46401705 TGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTTCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTCG-TCA
* * ** *
46401754 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-CGTCA
* * *
46401804 TGTGTGCAGTACTAAGTGCAGACTACTACATGTACCGGATAATTGGTCGCA
1 TGTGT--AGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTCGT--CA
46401855 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
46401881 TGCGTACCAT
Statistics
Matches: 145, Mismatches: 19, Indels: 19
0.79 0.10 0.10
Matches are distributed among these distances:
44 36 0.25
46 1 0.01
47 1 0.01
48 6 0.04
49 24 0.17
50 36 0.25
51 41 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (47 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTCGTCA
Found at i:46401830 original size:50 final size:49
Alignment explanation
Indices: 46401660--46401880 Score: 188
Period size: 50 Copynumber: 4.5 Consensus size: 49
46401650 GTGAGGTCAC
* *
46401660 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-GT--AT
1 GTGTG-AGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCCAT
* *** * * *
46401706 GTGT-AGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTTCGAT-CAC
1 GTGTGAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT-GGTCCAT
* * **
46401755 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT-CAT
1 GTGTG-AGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCCAT
* *
46401805 GTGTGCAGTACTAAGTGCAGACTACTACATGTACCGGATAATTGGTCGCAT
1 GTGTG-AGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTC-CAT
46401856 GTGT-AGTACTAAGTGCAGGCTACTA
1 GTGTGAGTACTAAGTGCAGGCTACTA
46401881 TGCGTACCAT
Statistics
Matches: 142, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
44 31 0.22
46 5 0.04
48 1 0.01
49 28 0.20
50 42 0.30
51 35 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GTGTGAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCCAT
Found at i:46406229 original size:25 final size:25
Alignment explanation
Indices: 46406201--46406279 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
46406191 CGAATGGCCA
46406201 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
46406226 ATGTG-TTAAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
46406248 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
46406273 GTGTGAT
1 ATGTGAT
46406280 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 14
0.62 0.15 0.23
Matches are distributed among these distances:
22 6 0.16
23 10 0.26
24 10 0.26
25 12 0.32
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:46406244 original size:47 final size:47
Alignment explanation
Indices: 46406175--46406300 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
46406165 TTTTATGTGT
*
46406175 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
*
46406222 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
46406269 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
46406301 AACATGTATG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:46406339 original size:48 final size:47
Alignment explanation
Indices: 46406223--46406398 Score: 205
Period size: 48 Copynumber: 3.7 Consensus size: 47
46406213 TGAACATGCA
* * * * *
46406223 TATATGTGTTAAGGCCGAATGGCCAATGTGATGAATG--TGA-ACATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGA-AAATGTATGAGATATG
* *
46406268 CATATGTGTGATAAGGCCGAATGGCTAATGTGAAACATGTATGAGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAA-ATGTATGAGATATG
*
46406318 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA-ATGTATGAGATATG
*
46406366 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAA
46406399 TAATTAGGCG
Statistics
Matches: 116, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
45 7 0.06
46 1 0.01
47 24 0.21
48 69 0.59
49 4 0.03
50 11 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAAATGTATGAGATATG
Found at i:46406399 original size:48 final size:48
Alignment explanation
Indices: 46406269--46406400 Score: 219
Period size: 48 Copynumber: 2.7 Consensus size: 48
46406259 GTGAACATGC
* * *
46406269 ATATGTGTGATAAGGCCGAATGGCTAATGTGAAACATGTATGAGATATGT
1 ATATGTG-G-TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
46406319 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
46406367 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
1 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA
46406401 ATTAGGCGAT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 71 0.90
49 1 0.01
50 7 0.09
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
Found at i:46406601 original size:37 final size:37
Alignment explanation
Indices: 46406551--46406658 Score: 207
Period size: 37 Copynumber: 2.9 Consensus size: 37
46406541 GGAAATATAT
46406551 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
46406588 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
46406625 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
46406659 TTGTTTGAGC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:46409889 original size:25 final size:26
Alignment explanation
Indices: 46409842--46409890 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
46409832 TTTTAATATA
*
46409842 ACATGTATTAAATATAATTATATTTC
1 ACATGTATAAAATATAATTATATTTC
46409868 ACAT-TATAAAATA-AATTCATATT
1 ACATGTATAAAATATAATT-ATATT
46409891 ATATCTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (26 bp):
ACATGTATAAAATATAATTATATTTC
Found at i:46421067 original size:40 final size:40
Alignment explanation
Indices: 46420885--46421107 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
46420875 TCCTCGTTCA
* * * *
46420885 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGA-TTTAATAACTCGCACG
*
46420924 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46420964 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46421004 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
46421044 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46421084 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46421108 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 36 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46421116 original size:41 final size:41
Alignment explanation
Indices: 46421039--46421116 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46421029 TTAGTATCTC
* * *
46421039 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46421080 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46421117 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46428423 original size:39 final size:40
Alignment explanation
Indices: 46428380--46428547 Score: 225
Period size: 39 Copynumber: 4.3 Consensus size: 40
46428370 TCCTCGTTCA
* * * *
46428380 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
46428419 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
46428459 AATGCCTT-GGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
46428498 AATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
46428537 AAGGCCTTCGG
1 AATGCCTTCGG
46428548 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 92 0.78
40 26 0.22
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:46428522 original size:40 final size:39
Alignment explanation
Indices: 46428380--46428600 Score: 223
Period size: 39 Copynumber: 5.6 Consensus size: 39
46428370 TCCTCGTTCA
* * * * *
46428380 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
46428419 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
46428458 GAATGCCTT-GGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
46428497 GAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
46428536 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
46428577 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46428601 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.02
39 101 0.64
40 46 0.29
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:46428560 original size:79 final size:78
Alignment explanation
Indices: 46428378--46428600 Score: 223
Period size: 79 Copynumber: 2.8 Consensus size: 78
46428368 GCTCCTCGTT
* * * * * * *
46428378 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAAGGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
46428443 TTTAATAACTCGCA
65 TTTAATAACTCGCA
* * *
46428457 CGAATGCCTTGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 CAAAGGCCTTCGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGGA
* *
46428522 TTT-GTATCTCGCA
65 TTTAATAACTCGCA
** * * * * * *
46428535 CAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAAGGCCTTCGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
46428600 A
64 A
46428601 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 43 0.36
79 72 0.60
80 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAAGGCCTTCGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAATAACTCGCA
Found at i:46428609 original size:41 final size:41
Alignment explanation
Indices: 46428532--46428609 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
46428522 TTTGTATCTC
* * *
46428532 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
46428573 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
46428610 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:46435943 original size:40 final size:39
Alignment explanation
Indices: 46435845--46436066 Score: 248
Period size: 40 Copynumber: 5.6 Consensus size: 39
46435835 TCCTCGTTCA
* * * * *
46435845 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
46435884 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
46435923 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
46435963 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
46436003 AAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
46436043 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46436067 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
38 3 0.02
39 57 0.35
40 100 0.61
41 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:46436050 original size:119 final size:119
Alignment explanation
Indices: 46435845--46436066 Score: 277
Period size: 119 Copynumber: 1.9 Consensus size: 119
46435835 TCCTCGTTCA
* * * *
46435845 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAAGCCTTCGGGACATAACCCGGATA
* *
46435910 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * **
46435964 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAAGCCTTCGGGA-CATAACCCGGAT
* * *
46436028 ATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
65 ATAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
46436067 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
118 3 0.03
119 78 0.91
120 5 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAAGCCTTCGGGACATAACCCGGATA
TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46436057 original size:79 final size:79
Alignment explanation
Indices: 46435848--46436066 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 79
46435838 TCGTTCAAAT
* * * * * *
46435848 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGGATTTA
*
46435912 ATAACTCGCACGAAT
65 ATAACTCGCACGAAA
* *
46435927 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGGATTTA
* *
46435992 GTATCTCGCAC-AAA
65 ATAACTCGCACGAAA
** * * * *
46436006 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCGGA
46436067 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 75 0.63
80 41 0.34
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGATTTAA
TAACTCGCACGAAA
Found at i:46440784 original size:22 final size:22
Alignment explanation
Indices: 46440743--46440785 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
46440733 AATATTTTCC
*
46440743 ACAAAAAAAGTGATAAAAAAGT
1 ACAAAAAAAGTGAAAAAAAAGT
46440765 ACAAAAAAA-TGAAAAGAAAAG
1 ACAAAAAAAGTGAAAA-AAAAG
46440786 AAAAAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.72, C:0.05, G:0.14, T:0.09
Consensus pattern (22 bp):
ACAAAAAAAGTGAAAAAAAAGT
Found at i:46448236 original size:40 final size:40
Alignment explanation
Indices: 46448169--46448265 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 40
46448159 AGATTCAGTT
* * *
46448169 CATTAGCGACGCTTTTCGAAAAACGCCGCTGA-AGATCAAG
1 CATTAGCGGCGTTTTTAGAAAAACGCCGCT-ATAGATCAAG
* * *
46448209 CATTAGCGGCGTTTTTAGAGAAGCGCCGCTATAGATCGAG
1 CATTAGCGGCGTTTTTAGAAAAACGCCGCTATAGATCAAG
46448249 C-TATAGCGGCGTTTTTA
1 CAT-TAGCGGCGTTTTTA
46448266 CGTAAGCGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.04
40 47 0.96
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CATTAGCGGCGTTTTTAGAAAAACGCCGCTATAGATCAAG
Found at i:46448344 original size:153 final size:154
Alignment explanation
Indices: 46448035--46448355 Score: 348
Period size: 153 Copynumber: 2.1 Consensus size: 154
46448025 TGAGTATTAG
*
46448035 AAACGCCGCTAAAAAATCGAGCATTAGCGGCATTTTCAGTAAAGCGCCGCTATAGATCCACCTAT
1 AAACGCCGCTAAAAAATCAAGCATTAGCGGCATTTTCAGTAAAGCGCCGCTATAGATCCACCTAT
* * * * * **
46448100 AGCGGCGCTTTATTAAAAACGCCGCTAAAAGTTTAATGCGAACGACGTTGCATTATGTAAGATTC
66 AGCGGCGCTTTATTAAAAACGCCGCTAAAAGATTAAAGAGAACGACGTCGCATTATGTAACAACC
* *
46448165 AGTTCATTAGCGACGCTTTTCGAA
131 AATTCATTAGCGACGCTTTTCAAA
* * * * * *
46448189 AAACGCCGCT-GAAGATCAAGCATTAGCGGCGTTTTTAG-AGAAGCGCCGCTATAGATCGAGCTA
1 AAACGCCGCTAAAAAATCAAGCATTAGCGGCATTTTCAGTA-AAGCGCCGCTATAGATCCACCTA
* * * ** *
46448252 TAGCGGCG-TTT-TTACGTAAGCGCTGCTAAAAGATTAAAGAGAACGACGTCGTTTTCT-TAACA
65 TAGCGGCGCTTTATTA--AAAACGCCGCTAAAAGATTAAAGAGAACGACGTCGCATTATGTAACA
*
46448314 ACCAATTGCATTAGCGGCG-TTTTCTAAA
128 ACCAATT-CATTAGCGACGCTTTTC-AAA
46448342 AAACGCCGCTAAAA
1 AAACGCCGCTAAAA
46448356 GATTAAATAC
Statistics
Matches: 137, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
151 3 0.02
152 17 0.12
153 105 0.77
154 12 0.09
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (154 bp):
AAACGCCGCTAAAAAATCAAGCATTAGCGGCATTTTCAGTAAAGCGCCGCTATAGATCCACCTAT
AGCGGCGCTTTATTAAAAACGCCGCTAAAAGATTAAAGAGAACGACGTCGCATTATGTAACAACC
AATTCATTAGCGACGCTTTTCAAA
Found at i:46448630 original size:21 final size:21
Alignment explanation
Indices: 46448591--46448630 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
46448581 CCTTAAATTG
*
46448591 TAAATCTTAAACCCTAAACAT
1 TAAATCTTAAACCCAAAACAT
* *
46448612 TAAATCTTCAATCCAAAAC
1 TAAATCTTAAACCCAAAAC
46448631 CATAAAACCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAATCTTAAACCCAAAACAT
Found at i:46448862 original size:12 final size:12
Alignment explanation
Indices: 46448845--46448877 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
46448835 AGAATAAATA
46448845 ATATATATATGG
1 ATATATATATGG
*
46448857 ATATATATATTG
1 ATATATATATGG
46448869 ATATATATA
1 ATATATATA
46448878 GATATTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (12 bp):
ATATATATATGG
Found at i:46454202 original size:21 final size:21
Alignment explanation
Indices: 46454176--46454255 Score: 112
Period size: 21 Copynumber: 4.0 Consensus size: 21
46454166 TAACTCATAT
46454176 AACTTACATAATTTACATAAC
1 AACTTACATAATTTACATAAC
* *
46454197 AACTTACATAACTCACAT---
1 AACTTACATAATTTACATAAC
46454215 AACTTACATAATTTACATAAC
1 AACTTACATAATTTACATAAC
*
46454236 AACTTACATAAGTTACATAA
1 AACTTACATAATTTACATAA
46454256 TTTACATAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
18 16 0.31
21 35 0.69
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.31
Consensus pattern (21 bp):
AACTTACATAATTTACATAAC
Found at i:46454210 original size:39 final size:39
Alignment explanation
Indices: 46454158--46454274 Score: 180
Period size: 39 Copynumber: 3.0 Consensus size: 39
46454148 TAAATTACAT
*
46454158 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
46454197 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
* * * * *
46454236 AACTTACATAAGTTACATAATTTACATAACTCACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
46454275 GTACATAACA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:46454215 original size:30 final size:30
Alignment explanation
Indices: 46454188--46454296 Score: 109
Period size: 30 Copynumber: 3.7 Consensus size: 30
46454178 CTTACATAAT
46454188 TTACATAACAACTTACATAACTCACATAAC
1 TTACATAACAACTTACATAACTCACATAAC
** * * * *
46454218 TTACATAATTTACATA-ACAACTTACATAAG
1 TTACATAA-CAACTTACATAACTCACATAAC
*
46454248 TTACAT---AATTTACATAACTCACATAAC
1 TTACATAACAACTTACATAACTCACATAAC
*
46454275 GTACATAACAACTTACATAACT
1 TTACATAACAACTTACATAACT
46454297 AATACATGTA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
26 3 0.05
27 16 0.27
30 37 0.62
31 4 0.07
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (30 bp):
TTACATAACAACTTACATAACTCACATAAC
Found at i:46454252 original size:48 final size:48
Alignment explanation
Indices: 46454141--46454294 Score: 157
Period size: 48 Copynumber: 3.2 Consensus size: 48
46454131 ATTGATCATT
* * * * * **
46454141 ACTTAAATAAATTACATAACTTACATAACTCATATAACTTACATAATTT
1 ACTTACATAAGTTACATAACTCACATAACTCACATAACGTACATAA-CA
* * * * **
46454190 ACATA-ACAACTTACATAACTCACATAACTTACATAATTTACATAACA
1 ACTTACATAAGTTACATAACTCACATAACTCACATAACGTACATAACA
* *
46454237 ACTTACATAAGTTACATAATTTACATAACTCACATAACGTACATAACA
1 ACTTACATAAGTTACATAACTCACATAACTCACATAACGTACATAACA
46454285 ACTTACATAA
1 ACTTACATAA
46454295 CTAATACATG
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
47 4 0.05
48 79 0.91
49 4 0.05
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.31
Consensus pattern (48 bp):
ACTTACATAAGTTACATAACTCACATAACTCACATAACGTACATAACA
Found at i:46454296 original size:9 final size:9
Alignment explanation
Indices: 46454141--46454283 Score: 133
Period size: 9 Copynumber: 15.2 Consensus size: 9
46454131 ATTGATCATT
*
46454141 ACTTAAATA
1 ACTTACATA
*
46454150 AATTACATA
1 ACTTACATA
46454159 ACTTACATA
1 ACTTACATA
* *
46454168 ACTCATATA
1 ACTTACATA
46454177 ACTTACATA
1 ACTTACATA
*
46454186 ATTTACATAACA
1 ACTTACAT---A
46454198 ACTTACATA
1 ACTTACATA
*
46454207 ACTCACATA
1 ACTTACATA
46454216 ACTTACATA
1 ACTTACATA
*
46454225 ATTTACATAACA
1 ACTTACAT---A
46454237 ACTTACATA
1 ACTTACATA
*
46454246 AGTTACATA
1 ACTTACATA
*
46454255 ATTTACATA
1 ACTTACATA
*
46454264 ACTCACATA
1 ACTTACATA
*
46454273 ACGTACATA
1 ACTTACATA
46454282 AC
1 AC
46454284 AACTTACATA
Statistics
Matches: 109, Mismatches: 19, Indels: 12
0.78 0.14 0.09
Matches are distributed among these distances:
9 93 0.85
12 16 0.15
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:46468626 original size:46 final size:48
Alignment explanation
Indices: 46468488--46468665 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 48
46468478 ACCACATTAT
* * * *
46468488 GAGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGC-ATTGAGAC
1 GAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCAGCTA-CGAGAC
* * *
46468536 GAGAGCTAGTATAAGA-CATGTCTAGGACAT-GTATCAGCCT-CGAGAC
1 GAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCAG-CTACGAGAC
*
46468582 GTA-AGCCAGTATAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGAT
1 G-AGAGCCAGTATAAGACCATGTCTGGGACATGGCATCAGCTACGAGAC
* * * *
46468628 GATAGTCAGTGTAAGACCATATCTGGGACATGGCATCA
1 GAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCA
46468666 ACACCTTACT
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.03
46 59 0.54
47 27 0.25
48 20 0.18
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (48 bp):
GAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCAGCTACGAGAC
Found at i:46486038 original size:47 final size:45
Alignment explanation
Indices: 46485963--46486232 Score: 184
Period size: 47 Copynumber: 5.8 Consensus size: 45
46485953 ATTTATTTGT
* *
46485963 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACA-GATAA
* * * * *
46486009 GAGCCAGTGTAAGACCATGTCTGGGACATGACATC-GACATTGAAACAA
1 GAGCCAGTATAAGA-CATGTCTGGGACATG-CATCGGCCA--CAGATAA
* * * * * *
46486057 GAGCTAGTATGAGACATGTTTGGGACATGCATCAGCCTCAAGACATA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCAC-AGATA-A
* * * * *
46486104 -AGCCAGTATAAGACATGTCTAGGAGATGCATCGGCTAGAGATGA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACAGATAA
* * * *** *
46486148 TAGTCAGTATAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 GAGCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGCCACAGATAA
* *
46486195 GAGCCAGTGTAATACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGC
46486233 ACCTTACCCA
Statistics
Matches: 179, Mismatches: 35, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
44 1 0.01
45 15 0.08
46 63 0.35
47 81 0.45
48 18 0.10
49 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (45 bp):
GAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCACAGATAA
Found at i:46487919 original size:31 final size:31
Alignment explanation
Indices: 46487828--46487949 Score: 111
Period size: 31 Copynumber: 3.9 Consensus size: 31
46487818 TGACATGTAG
* * *
46487828 CTATCACCTTCCAAAC-CTAACCAACATATTA
1 CTATTACCCTCCAAACAC-AACCAACATATAA
* ** * * * *
46487859 CCATTACCCTAAAAAAACAATCAGCATATAG
1 CTATTACCCTCCAAACACAACCAACATATAA
* *
46487890 CTTTTACCCTCCAAACACAACCAATATATAA
1 CTATTACCCTCCAAACACAACCAACATATAA
*
46487921 CTATTACCCTCCGAACACAACCAACATAT
1 CTATTACCCTCCAAACACAACCAACATAT
46487950 CTCGGGGCCT
Statistics
Matches: 68, Mismatches: 22, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
31 67 0.99
32 1 0.01
ACGTcount: A:0.42, C:0.33, G:0.02, T:0.23
Consensus pattern (31 bp):
CTATTACCCTCCAAACACAACCAACATATAA
Found at i:46502452 original size:47 final size:47
Alignment explanation
Indices: 46502393--46502833 Score: 711
Period size: 47 Copynumber: 9.4 Consensus size: 47
46502383 GATGTACAAG
* * *
46502393 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
46502440 GTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
46502487 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
46502534 GTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
46502581 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
46502628 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
46502675 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
46502722 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
46502769 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
46502816 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
46502834 TCCCGAAGGG
Statistics
Matches: 365, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 365 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:46510043 original size:18 final size:18
Alignment explanation
Indices: 46510017--46510055 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
46510007 TTTAAAAAGG
* *
46510017 AAAACAAATGAATGTTAA
1 AAAAAAAATGAATCTTAA
*
46510035 AAAAAAAATGAGTCTTAA
1 AAAAAAAATGAATCTTAA
46510053 AAA
1 AAA
46510056 CTTAATGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.64, C:0.05, G:0.10, T:0.21
Consensus pattern (18 bp):
AAAAAAAATGAATCTTAA
Found at i:46527111 original size:9 final size:9
Alignment explanation
Indices: 46527097--46527129 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
46527087 ATTTGAGTTG
46527097 ACTCGAATA
1 ACTCGAATA
*
46527106 ACTCGATTA
1 ACTCGAATA
46527115 ACTCGAATA
1 ACTCGAATA
46527124 ACTCGA
1 ACTCGA
46527130 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:46527120 original size:18 final size:18
Alignment explanation
Indices: 46527097--46527131 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
46527087 ATTTGAGTTG
46527097 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
46527115 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
46527132 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:46527469 original size:20 final size:20
Alignment explanation
Indices: 46527444--46527494 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
46527434 GAAGCAAAGC
*
46527444 ACACGCCTGTGCGCTTAGTG
1 ACACGCCCGTGCGCTTAGTG
*
46527464 ACACGCCCGTGTGCTTAGTG
1 ACACGCCCGTGCGCTTAGTG
*
46527484 ACACACCCGTG
1 ACACGCCCGTG
46527495 TTGAATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGCGCTTAGTG
Found at i:46527576 original size:13 final size:13
Alignment explanation
Indices: 46527558--46527582 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46527548 CCAAGCACAC
46527558 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
46527571 GCCCGTGTCCCT
1 GCCCGTGTCCCT
46527583 CACACAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:46530318 original size:47 final size:47
Alignment explanation
Indices: 46530265--46530701 Score: 649
Period size: 47 Copynumber: 9.2 Consensus size: 47
46530255 AATTCTAAAT
*
46530265 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
46530312 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
46530359 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
46530407 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
46530456 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
46530503 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
46530552 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
46530599 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
46530646 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
46530693 TGTGATAAG
1 TGTGATAAG
46530702 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 31, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
47 221 0.62
48 44 0.12
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:46530512 original size:96 final size:94
Alignment explanation
Indices: 46530265--46530701 Score: 649
Period size: 96 Copynumber: 4.6 Consensus size: 94
46530255 AATTCTAAAT
* *
46530265 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
46530330 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* *
46530359 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGATAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
46530424 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
* * * *
46530456 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
46530521 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTG--TATATA
* ** *
46530552 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
46530617 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
46530646 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46530702 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 25, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
94 55 0.17
95 80 0.25
96 170 0.54
97 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:46530608 original size:143 final size:142
Alignment explanation
Indices: 46530265--46530701 Score: 682
Period size: 143 Copynumber: 3.1 Consensus size: 142
46530255 AATTCTAAAT
*
46530265 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
46530330 CCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGAATGTG
66 CCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAGGGCCTAATGGCCGATGTGATGAATGTG
*
46530395 ATAGTG-TATATA
130 AAAGTGATATATA
46530407 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCTTAAT
* * * *
46530472 GGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGT
46530537 GAAAGTGTATATATA
129 GAAAGTG-ATATATA
* **
46530552 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
* * * * *
46530617 CCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
46530682 AAGTGCATA-A-A
131 AAGTG-ATATATA
46530693 TGTGATAAG
1 TGTGATAAG
46530702 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.04
142 41 0.15
143 120 0.44
144 55 0.20
145 46 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATA
Found at i:46530875 original size:37 final size:37
Alignment explanation
Indices: 46530819--46530897 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46530809 TCAACCTCTA
* * *
46530819 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46530856 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46530893 AAGAC
1 AAGAC
46530898 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46534871 original size:20 final size:21
Alignment explanation
Indices: 46534848--46534886 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
46534838 CCCTTGAAAC
46534848 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
46534868 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
46534887 ATCACTAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.21, C:0.31, G:0.38, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:46536242 original size:46 final size:46
Alignment explanation
Indices: 46536172--46536347 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
46536162 TGTCCATTGT
* *
46536172 GAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
* * * * **
46536218 AACGCCGATGCATGTCCTAGACATGTCTTACA-TGGCAAAAAT-ATCTC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGC---TCTCATCTC
** * *
46536265 GAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATT
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
* *
46536311 GTGGCCGAAGCATGTCCCAGACATGTCTTACACTAGC
1 GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
46536348 ACATATATCA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 4 0.04
46 64 0.62
47 31 0.30
48 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
GAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTC
Found at i:46536286 original size:93 final size:93
Alignment explanation
Indices: 46536172--46536342 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
46536162 TGTCCATTGT
* * * * *
46536172 GAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAACGCCGATGCATGTCCTA
1 GAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAACGCCGAAGCATGTCCCA
46536237 GACATGTCTTACATGGCAAAAATATCTC
66 GACATGTCTTACATGGCAAAAATATCTC
****
46536265 GAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATTGTGGCCGAAGCATGTCCCA
1 GAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAACGCCGAAGCATGTCCCA
46536330 GACATGTCTTACA
66 GACATGTCTTACA
46536343 CTAGCACATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (93 bp):
GAGGCTAATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAACGCCGAAGCATGTCCCA
GACATGTCTTACATGGCAAAAATATCTC
Found at i:46540168 original size:12 final size:12
Alignment explanation
Indices: 46540151--46540176 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46540141 TCACACTTAG
46540151 GGTGTTTATATA
1 GGTGTTTATATA
46540163 GGTGTTTATATA
1 GGTGTTTATATA
46540175 GG
1 GG
46540177 CTTTGGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (12 bp):
GGTGTTTATATA
Found at i:46542182 original size:40 final size:39
Alignment explanation
Indices: 46542127--46542289 Score: 229
Period size: 40 Copynumber: 4.1 Consensus size: 39
46542117 TGGAGGATAA
* *
46542127 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTA-TAT
46542167 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
46542207 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
46542247 CCGGGCTAAGTCCCGAAGGTATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
46542287 CCG
1 CCG
46542290 ATTCAATCCC
Statistics
Matches: 114, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
39 3 0.03
40 110 0.96
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:46544556 original size:37 final size:37
Alignment explanation
Indices: 46544506--46544584 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
46544496 TTATTACGAA
* * *
46544506 GTCTTACCTGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
46544543 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
46544580 GTCTT
1 GTCTT
46544585 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:46544781 original size:47 final size:47
Alignment explanation
Indices: 46544703--46544974 Score: 420
Period size: 47 Copynumber: 5.7 Consensus size: 47
46544693 CCCTTCGGGA
* * * * * *
46544703 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46544750 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46544797 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46544844 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46544893 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46544940 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
46544975 AGAATTCTAA
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.77
49 47 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.