Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 143 of 320
Found at i:46866180 original size:34 final size:34
Alignment explanation
Indices: 46866133--46866208 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
46866123 TTAGCCCTTC
* *
46866133 TTTCAGTAGCAGTAGTAG-CTTGGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAGTC-TGGGCCTGAGCCCA
*
46866167 TTTCAGTAACAGTAGCAGTCTGGGCCTTAGCCCA
1 TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
*
46866201 TTTTAGTA
1 TTTCAGTA
46866209 TAGTATGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAGTCTGGGCCTGAGCCCA
Found at i:46868325 original size:64 final size:64
Alignment explanation
Indices: 46868245--46868427 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
46868235 AGACATTATG
* *
46868245 ATGTAGCTAGGTCGCATGGCTGATACTATGTGTACACCATGTAGACAAGAGAGATACGGGATAT
1 ATGTAGCTAGGTCGCATGGCTGATACTATGTGTACACCATGTAGACAAGAGAGATACGAGATAA
* * * * * * *
46868309 ATGTAGCTAGGTCGCATGCGCGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATG-GCTGATACTA-TG-TGTACACCATGTAGACAAGAGAGATACGAGAT
46868374 AA
63 AA
* * * * *
46868376 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 A-TGTAGCTAGGTCGCATGGCTGATACTATGTGTACACCATGTAG-ACAAGAGAG
46868428 CCGAACTATA
Statistics
Matches: 95, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 19 0.20
65 11 0.12
66 14 0.15
67 30 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGCTGATACTATGTGTACACCATGTAGACAAGAGAGATACGAGATAA
Found at i:46877283 original size:66 final size:65
Alignment explanation
Indices: 46877156--46877283 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 65
46877146 TACTATGTGT
* * * *
46877156 ACACCATGTAGAAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGAAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATGCGTGGTACCAAGTGAAG
46877221 G
65 G
* *
46877222 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGA-AAGAGAGCTACGAGATAAA-TGAGCTAGGTCACATGCGTGGTACCAAGTG
46877284 TTCACCATGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
66 35 0.65
67 17 0.31
68 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGAAAGAGAGCTACGAGATAAATGAGCTAGGTCACATGCGTGGTACCAAGTGAAGG
Found at i:46877305 original size:63 final size:63
Alignment explanation
Indices: 46877127--46877305 Score: 193
Period size: 63 Copynumber: 2.8 Consensus size: 63
46877117 ATTATGATGT
* * * *
46877127 AGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGA-AAGAGAGCTACGGGATATATG
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATG
* * * *
46877189 TAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATAAA
1 -AGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGATAAA
46877254 CTG
62 -TG
* *
46877257 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
46877306 CGAACTATAT
Statistics
Matches: 96, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 41 0.43
66 35 0.36
67 17 0.18
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (63 bp):
AGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAATG
Found at i:46908313 original size:46 final size:46
Alignment explanation
Indices: 46908263--46908435 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
46908253 TGGTTGAGCA
* *
46908263 TCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
46908309 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
46908356 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
46908402 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46908436 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:46908419 original size:93 final size:93
Alignment explanation
Indices: 46908260--46908430 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
46908250 GGATGGTTGA
* *
46908260 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46908325 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
46908353 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46908418 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46908431 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46921964 original size:4 final size:4
Alignment explanation
Indices: 46921955--46921979 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
46921945 CCATATACAA
46921955 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
46921980 TAGATACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:46922009 original size:20 final size:20
Alignment explanation
Indices: 46921984--46922024 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
46921974 GAAAGATAGA
46921984 TACATCTTTACATGCCTTTG
1 TACATCTTTACATGCCTTTG
46922004 TACATCTTTACATGCCTTTG
1 TACATCTTTACATGCCTTTG
46922024 T
1 T
46922025 TTGGCGAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (20 bp):
TACATCTTTACATGCCTTTG
Found at i:46926763 original size:37 final size:37
Alignment explanation
Indices: 46926700--46926808 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
46926690 AGCTCAGACG
* *
46926700 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46926737 AAATCTCCACACGTAGTCATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46926774 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
46926809 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:46927013 original size:50 final size:50
Alignment explanation
Indices: 46926959--46927055 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
46926949 ATCGCCTACG
*
46926959 TATTTCAGACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
46927009 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
46927056 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:46927112 original size:47 final size:47
Alignment explanation
Indices: 46927013--46927205 Score: 255
Period size: 47 Copynumber: 4.1 Consensus size: 47
46927003 TATATATATT
* * * * *
46927013 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
46927059 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
46927106 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * **
46927153 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
46927200 TCACAT
1 TCACAT
46927206 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 20 0.15
47 105 0.78
48 10 0.07
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:46927133 original size:22 final size:22
Alignment explanation
Indices: 46927058--46927176 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
46927048 TCTCATATTC
46927058 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
46927080 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
46927104 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
46927127 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
46927151 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
46927174 ATC
1 ATC
46927177 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:46930682 original size:12 final size:13
Alignment explanation
Indices: 46930653--46930686 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
46930643 TCAGGAGGTA
46930653 ATCTGGGTAATAC
1 ATCTGGGTAATAC
*
46930666 TTCTGGG-AATAC
1 ATCTGGGTAATAC
46930678 ATCTGGGTA
1 ATCTGGGTA
46930687 CTCACATACT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (13 bp):
ATCTGGGTAATAC
Found at i:46933620 original size:26 final size:26
Alignment explanation
Indices: 46933584--46933636 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
46933574 AATGTCTTTA
46933584 TACCAAAGCTGGTCAAGTTCATAGTG
1 TACCAAAGCTGGTCAAGTTCATAGTG
*
46933610 TACCAAAGCTGGTCAAGTTGATAGTG
1 TACCAAAGCTGGTCAAGTTCATAGTG
46933636 T
1 T
46933637 GCTAACTCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
TACCAAAGCTGGTCAAGTTCATAGTG
Found at i:46944679 original size:17 final size:17
Alignment explanation
Indices: 46944653--46944704 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 17
46944643 GAAAAAAGAT
46944653 TAAA-ATTTTATAAATA
1 TAAATATTTTATAAATA
*
46944669 TAATTATTTTATTTAAAAATA
1 TAAATATTTTA--T--AAATA
46944690 TAAATATTTTATAAA
1 TAAATATTTTATAAA
46944705 AGGAATCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 3 0.10
17 9 0.31
19 2 0.07
21 15 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAAATATTTTATAAATA
Found at i:46944683 original size:21 final size:21
Alignment explanation
Indices: 46944659--46944701 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
46944649 AGATTAAAAT
* *
46944659 TTTATAAATATAATTATTTTA
1 TTTAAAAATATAAATATTTTA
46944680 TTTAAAAATATAAATATTTTA
1 TTTAAAAATATAAATATTTTA
46944701 T
1 T
46944702 AAAAGGAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAAAAATATAAATATTTTA
Found at i:46946006 original size:24 final size:24
Alignment explanation
Indices: 46945974--46946024 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
46945964 GTGAGTTTTA
46945974 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
46945998 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
46946022 AAT
1 AAT
46946025 GTTTTTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (24 bp):
AATTCTGACCTAAATTAATCTGCC
Found at i:46947492 original size:12 final size:12
Alignment explanation
Indices: 46947475--46947502 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
46947465 TTGGTTATTG
46947475 CTGTAGCAGCTT
1 CTGTAGCAGCTT
46947487 CTGTAGCAGCTT
1 CTGTAGCAGCTT
46947499 CTGT
1 CTGT
46947503 TTTTTGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (12 bp):
CTGTAGCAGCTT
Found at i:46950038 original size:93 final size:92
Alignment explanation
Indices: 46949906--46950100 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
46949896 TTGATTTTAG
* *
46949906 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
46949970 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
46949998 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
46950063 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
46950091 CAAATTCATA
1 TAAATTCATA
46950101 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:46950158 original size:17 final size:17
Alignment explanation
Indices: 46950133--46950166 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46950123 ATAATTTTAA
*
46950133 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
46950150 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
46950167 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:46950168 original size:15 final size:16
Alignment explanation
Indices: 46950133--46950171 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
46950123 ATAATTTTAA
*
46950133 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
46950150 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
46950165 ATTTAAT
1 ATTTAAT
46950172 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:46950175 original size:17 final size:18
Alignment explanation
Indices: 46950137--46950176 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
46950127 TTTTAAATTT
*
46950137 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
46950155 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
46950171 TATTAA
1 TATTAA
46950177 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:46950291 original size:15 final size:15
Alignment explanation
Indices: 46950256--46950307 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
46950246 TTAAGAATTT
*
46950256 TATTAAATTAT-ATA
1 TATTTAATTATAATA
46950270 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
46950284 TATTTAATAATAAT-
1 TATTTAATTATAATA
46950298 TATGTTAATT
1 TAT-TTAATT
46950308 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:46950298 original size:120 final size:120
Alignment explanation
Indices: 46950132--46950423 Score: 459
Period size: 120 Copynumber: 2.4 Consensus size: 120
46950122 AATAATTTTA
* * *
46950132 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATATTAATTAT-TTGAAATTT-TCT
1 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTT--AATTTATAT
* *
46950193 TTTATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAAT-TTTATTTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTT-TTAAG
46950251 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
*
46950316 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
46950371 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
46950424 TAAATATGAT
Statistics
Matches: 162, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
119 23 0.14
120 128 0.79
121 11 0.07
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATATTAATTTTTAAG
Found at i:46950388 original size:59 final size:59
Alignment explanation
Indices: 46950205--46950388 Score: 148
Period size: 59 Copynumber: 3.1 Consensus size: 59
46950195 TATAGTATCA
* *
46950205 TATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTATTTATTAAGAATTTTATTAAAT
* * * * * * * *
46950264 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-CAGTAT
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTAT-TT-ATTAAGAATTTTATTA-AAT
46950323 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTT-TTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATT-ATTTATTAAGAATTTTATTAAAT
46950384 TATAT
1 TATAT
46950389 ATTTTAATTA
Statistics
Matches: 92, Mismatches: 18, Indels: 30
0.66 0.13 0.21
Matches are distributed among these distances:
56 6 0.07
57 10 0.11
58 9 0.10
59 19 0.21
60 7 0.08
61 12 0.13
62 10 0.11
63 13 0.14
64 6 0.07
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTATTTATTAAGAATTTTATTAAAT
Found at i:46950406 original size:16 final size:16
Alignment explanation
Indices: 46950385--46950426 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
46950375 TTATTAAATT
*
46950385 ATATATTTTAATTATA
1 ATATATTTTAATAATA
46950401 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
46950416 AT-TATGTTTAA
1 ATATAT-TTTAA
46950427 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:46950411 original size:15 final size:15
Alignment explanation
Indices: 46950376--46950417 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
46950366 TTAAGAATTT
*
46950376 TATTAAATTAT-ATA
1 TATTTAATTATAATA
46950390 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
46950404 TATTTAATAATAAT
1 TATTTAATTATAAT
46950418 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:46950537 original size:154 final size:156
Alignment explanation
Indices: 46950360--46950673 Score: 569
Period size: 154 Copynumber: 2.0 Consensus size: 156
46950350 ATAAGAATAT
* *
46950360 TAATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46950425 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAAT
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAAT
46950488 AATAATTTACCAAAACAAATTTATGC
131 AATAATTTACCAAAACAAATTTATGC
46950514 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
46950579 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAA
* *
46950644 TAATCATTTACCAAAACAAATTTCTGC
130 TAATAATTTACCAAAACAAATTTATGC
46950671 TAA
1 TAA
46950674 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 4, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
154 91 0.59
155 2 0.01
157 60 0.39
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTATGC
Found at i:46950554 original size:18 final size:17
Alignment explanation
Indices: 46950526--46950560 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46950516 ATTATTAAGA
*
46950526 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46950543 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46950561 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46950594 original size:75 final size:75
Alignment explanation
Indices: 46950361--46950596 Score: 203
Period size: 75 Copynumber: 3.1 Consensus size: 75
46950351 TAAGAATATT
* *
46950361 AATTTTTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
46950426 AATATGATTA
66 AATATGATTA
* ** * * * * * * *
46950436 AATTATTTATTATTGATATTAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT-TA
1 AATTATTAAGAATT-TTATTAA-ATTA-TATATTTTAATTAA-AATATATTTAATAATAATTATG
*** * *
46950497 CCAAAACA-AATTTA
62 TTTAAATATGA-TTA
46950511 TGCTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
1 ----AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
46950576 TTTAAATATGATTA
62 TTTAAATATGATTA
46950590 AATTATT
1 AATTATT
46950597 TATTATTGAT
Statistics
Matches: 115, Mismatches: 32, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
74 1 0.01
75 29 0.25
76 28 0.24
77 6 0.05
78 27 0.23
79 23 0.20
80 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:46950814 original size:16 final size:16
Alignment explanation
Indices: 46950793--46950831 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
46950783 TTGATTTGCT
*
46950793 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
46950809 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
46950825 ATTACAC
1 ATTACAC
46950832 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:46950832 original size:16 final size:16
Alignment explanation
Indices: 46950806--46950862 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
46950796 ACACAGCTTT
* *
46950806 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
46950822 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
46950838 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
46950854 TCCAATACA
1 TCCAATACA
46950863 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:46953095 original size:4 final size:4
Alignment explanation
Indices: 46953088--46953120 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
46953078 TATATTTATA
46953088 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
46953121 TTGAGTTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:46959146 original size:40 final size:40
Alignment explanation
Indices: 46959087--46959274 Score: 304
Period size: 40 Copynumber: 4.7 Consensus size: 40
46959077 GAGCACTGGA
* *
46959087 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* * *
46959127 ATATATCCGGCCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
46959167 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
46959207 ATATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
46959247 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
46959275 ATGTGTTTGC
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:46962003 original size:27 final size:27
Alignment explanation
Indices: 46961973--46962124 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
46961963 ATATTAAGTC
* *
46961973 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
46962000 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
46962028 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
46962055 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
46962082 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
46962110 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46962125 GTACAATTTA
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
27 70 0.61
28 45 0.39
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:46962041 original size:55 final size:54
Alignment explanation
Indices: 46961973--46962124 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 54
46961963 ATATTAAGTC
* *
46961973 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
46962028 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
46962082 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
46962125 GTACAATTTA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 25 0.28
55 63 0.72
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:46962110 original size:82 final size:82
Alignment explanation
Indices: 46961973--46962124 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
46961963 ATATTAAGTC
* *
46961973 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
46962038 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAATT
* * * *
46962055 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
46962120 GTGCT
66 GTGCT
46962125 GTACAATTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAATT
Found at i:46964728 original size:27 final size:27
Alignment explanation
Indices: 46964696--46964841 Score: 229
Period size: 27 Copynumber: 5.3 Consensus size: 27
46964686 ACAACTCTAC
*
46964696 CTTAGTGCTATATAGTCAACTCGCACA
1 CTTAGTGCTACATAGTCAACTCGCACA
*
46964723 CTTAGTGCTACATAATCAAACTCGCACA
1 CTTAGTGCTACATAGTC-AACTCGCACA
*
46964751 CTTAGTGCTACATAGTCAATTCGCACA
1 CTTAGTGCTACATAGTCAACTCGCACA
* *
46964778 CTTAGTGCAACATAGTCAATTCGCACA
1 CTTAGTGCTACATAGTCAACTCGCACA
46964805 CTTAGTGCTACATAGTCCAACTCGCACA
1 CTTAGTGCTACATAGT-CAACTCGCACA
46964833 CTTAGTGCT
1 CTTAGTGCT
46964842 GTACAATTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
27 65 0.59
28 45 0.41
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CTTAGTGCTACATAGTCAACTCGCACA
Found at i:46964775 original size:55 final size:54
Alignment explanation
Indices: 46964696--46964841 Score: 229
Period size: 55 Copynumber: 2.7 Consensus size: 54
46964686 ACAACTCTAC
*
46964696 CTTAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACA
1 CTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACTCGCACA
* * * *
46964751 CTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATTCGCACA
1 CTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGCACA
46964805 CTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
46964842 GTACAATTTA
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 25 0.30
55 58 0.70
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (54 bp):
CTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGCACA
Found at i:46971197 original size:27 final size:27
Alignment explanation
Indices: 46971166--46971221 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
46971156 CATAGTTATG
*
46971166 TTTGGCAAACT-ATGTTCGCATAAGTGT
1 TTTGGCAAACTGA-GTTCACATAAGTGT
*
46971193 TTTGGCAAACTGAGTTCACATATGTGT
1 TTTGGCAAACTGAGTTCACATAAGTGT
46971220 TT
1 TT
46971222 GTTCAACTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (27 bp):
TTTGGCAAACTGAGTTCACATAAGTGT
Found at i:46972796 original size:96 final size:96
Alignment explanation
Indices: 46972632--46972818 Score: 304
Period size: 96 Copynumber: 1.9 Consensus size: 96
46972622 GACATTTGAG
* *
46972632 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCCACATTATGAGAGATAGTG
1 TGATATGTGTGCTAATGTAAGACCATGTATGGGACATGGCATCAGCCACATTATGAGAGATAGTG
46972697 TAAGACCATGTCTGGGACAGGGCATCGATGT
66 TAAGACCATGTCTGGGACAGGGCATCGATGT
* *
46972728 TGATATGTGTGCTAATGTAAGATCATGTCTGGGACATGGCATCAGCCACATTATGAGA-ACTAGT
1 TGATATGTGTGCTAATGTAAGACCATGTATGGGACATGGCATCAGCCACATTATGAGAGA-TAGT
* *
46972792 GTAAGACCATGTTTGGGACATGGCATC
65 GTAAGACCATGTCTGGGACAGGGCATC
46972819 AGCAATTTAC
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 1 0.01
96 83 0.99
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (96 bp):
TGATATGTGTGCTAATGTAAGACCATGTATGGGACATGGCATCAGCCACATTATGAGAGATAGTG
TAAGACCATGTCTGGGACAGGGCATCGATGT
Found at i:46972819 original size:48 final size:48
Alignment explanation
Indices: 46972643--46972821 Score: 202
Period size: 48 Copynumber: 3.7 Consensus size: 48
46972633 GATATGTGTG
* *
46972643 CTAGTGTAAGACCATGTATGGGACATGGCATCGGCCACATTATGAGAGA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA-A
* *** * **
46972692 -TAGTGTAAGACCATGTCTGGGACAGGGCATCGATG-TTGA-TATGTGTG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-A-GCCACATTATGAGAA
* *
46972739 CTAATGTAAGATCATGTCTGGGACATGGCATCAGCCACATTATGAGAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAA
*
46972787 CTAGTGTAAGACCATGTTTGGGACATGGCATCAGC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
46972822 AATTTACCCT
Statistics
Matches: 104, Mismatches: 21, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
46 1 0.01
47 2 0.02
48 99 0.95
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAA
Found at i:46975333 original size:15 final size:15
Alignment explanation
Indices: 46975277--46975339 Score: 72
Period size: 16 Copynumber: 4.1 Consensus size: 15
46975267 CGTTTGGTTC
46975277 ACTGTAATGGAATAAG
1 ACTGTAATGGAAT-AG
* *
46975293 GCTGTAATTGAATAG
1 ACTGTAATGGAATAG
*
46975308 AGCTATAATGGAATAG
1 A-CTGTAATGGAATAG
*
46975324 ACCGTAATGGAATAG
1 ACTGTAATGGAATAG
46975339 A
1 A
46975340 AATGTAACAG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
15 15 0.38
16 24 0.62
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (15 bp):
ACTGTAATGGAATAG
Found at i:46975666 original size:57 final size:57
Alignment explanation
Indices: 46975551--46975675 Score: 132
Period size: 57 Copynumber: 2.2 Consensus size: 57
46975541 TTTTTATTAA
* * * **
46975551 AAAATAATAAATAATTTAATCATATTTTAACATAATTTTTACTAAATATAATTTAAT
1 AAAATAATATACAATTTAATAATATTTTAACATAATTTTTACTAAATATAATGAAAT
*
46975608 AAAATAATATACAATTTAATAATATTCTTAATATAATTATTATA-TAAAT-TAA-GAAAT
1 AAAATAATATACAATTTAATAATATT-TTAACATAATT-TT-TACTAAATATAATGAAAT
46975665 AATAAT-ATATA
1 AA-AATAATATA
46975676 GTATTATTAA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
57 33 0.57
58 16 0.28
59 7 0.12
60 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
AAAATAATATACAATTTAATAATATTTTAACATAATTTTTACTAAATATAATGAAAT
Found at i:46981470 original size:121 final size:122
Alignment explanation
Indices: 46981329--46981621 Score: 390
Period size: 122 Copynumber: 2.4 Consensus size: 122
46981319 AAACAGAGGC
* * * * * *
46981329 TGCCACAAAGGTTTTCCTTTACATTCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTTTGCC
1 TGCCACAAAGGTTGTCCTTTACATTTAGTACTCGCCAAAAAGGCTTTCCTGTCCAGAGTTATGCC
* *
46981394 ACAAAAGCTATC-ATTATATCCAATACTCATCACAAAGGCTTTCCTATCCAGAGTTT
66 ACAAAAGCTATCTATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
* **
46981450 TGCCACAAAGGTTGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCAAGTCCAGAGTTATGCC
1 TGCCACAAAGGTTGTCCTTTACATTTAGTACTCGCCAAAAAGGCTTTCCTGTCCAGAGTTATGCC
* * * * * *
46981515 ACAGAGGCTATCTTTTATATCTAGTACTCACCAAAAAGGCTTTCCTATCCAGATTTT
66 ACAAAAGCTATCTATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
* * * *
46981572 TCCCACAAAGGATGTCCTTTACATTTAGTACTTGCCATAAAGGCTTTCCT
1 TGCCACAAAGGTTGTCCTTTACATTTAGTACTCGCCAAAAAGGCTTTCCT
46981622 TCTCTTGGTG
Statistics
Matches: 147, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
121 66 0.45
122 81 0.55
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (122 bp):
TGCCACAAAGGTTGTCCTTTACATTTAGTACTCGCCAAAAAGGCTTTCCTGTCCAGAGTTATGCC
ACAAAAGCTATCTATTATATCCAATACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
Found at i:46981620 original size:61 final size:61
Alignment explanation
Indices: 46981329--46981621 Score: 275
Period size: 61 Copynumber: 4.8 Consensus size: 61
46981319 AAACAGAGGC
* * * * * * * *
46981329 TGCCACAAAGGTTTTCCTTTACATTCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTT
1 TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
* * * * * ** * * *
46981390 TGCCACAAAAGCTAT-CATTATATCCAATACTCATCACAAAGGCTTTCCTATCCAGAGTTT
1 TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
* * *
46981450 TGCCACAAAGGTTGTCCTTTACATTTAGTACTCACCAAAAAGGCTTT-CAAGTCCAGAGTTA
1 TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCTA-TCCAGAGTTT
* * * * * * *
46981511 TGCCACAGAGGCTATCTTTTATATCTAGTACTCACCAAAAAGGCTTTCCTATCCAGATTTT
1 TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
* ** *
46981572 TCCCACAAAGGATGTCCTTTACATTTAGTACTTGCCATAAAGGCTTTCCT
1 TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCT
46981622 TCTCTTGGTG
Statistics
Matches: 188, Mismatches: 41, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
60 52 0.28
61 134 0.71
62 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (61 bp):
TGCCACAAAGGATGTCCTTTACATTTAGTACTCACCAAAAAGGCTTTCCTATCCAGAGTTT
Found at i:46984925 original size:28 final size:28
Alignment explanation
Indices: 46984893--46984961 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
46984883 CAGCCCACTT
*
46984893 GGCCCAATCTCATTTATATGGCCCATCA
1 GGCCCAATCACATTTATATGGCCCATCA
* * *
46984921 GGCCCAAATCACCTTTATATGGCCCGTTA
1 GGCCC-AATCACATTTATATGGCCCATCA
46984950 GGCCCAAATCAC
1 GGCCC-AATCAC
46984962 CTTATATTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (28 bp):
GGCCCAATCACATTTATATGGCCCATCA
Found at i:46984940 original size:29 final size:29
Alignment explanation
Indices: 46984905--46984968 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
46984895 CCCAATCTCA
46984905 TTTATATGGCCCATCAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAAATCACC
* *
46984934 TTTATATGGCCCGTTAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAAATCACC
46984963 -TTATAT
1 TTTATAT
46984969 TCATGCTCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
28 6 0.18
29 27 0.82
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTATATGGCCCATCAGGCCCAAATCACC
Found at i:46989941 original size:18 final size:19
Alignment explanation
Indices: 46989918--46989957 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
46989908 GACCCCTTGG
*
46989918 TGGTAGTTGAACACC-CCT
1 TGGTAGCTGAACACCACCT
46989936 TGGTAGCTGAACACCACCT
1 TGGTAGCTGAACACCACCT
46989955 TGG
1 TGG
46989958 CCCACTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (19 bp):
TGGTAGCTGAACACCACCT
Found at i:46992600 original size:29 final size:28
Alignment explanation
Indices: 46992508--46992626 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 28
46992498 TACATACATG
* *
46992508 TATATGGCCCACTT-GGCCCAATCTCATT
1 TATATGGCCCA-TTAGGCCCAATCACCTT
* *
46992536 TATATGGCCCATCAGGCCCAAT-TCCTAT
1 TATATGGCCCATTAGGCCCAATCACCT-T
46992564 TCATATGGCCCATTAGGCCCAAATCACCTT
1 T-ATATGGCCCATTAGGCCC-AATCACCTT
* *
46992594 TACATGGCCCGTTAGGCCCAAATCACC-T
1 TATATGGCCCATTAGGCCC-AATCACCTT
46992622 TATAT
1 TATAT
46992627 TCACTCTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
27 4 0.05
28 26 0.33
29 41 0.52
30 5 0.06
31 3 0.04
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACCTT
Found at i:46994899 original size:33 final size:33
Alignment explanation
Indices: 46994857--46994933 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
46994847 TACACTTTGT
*
46994857 TTGGTGTGTT-AGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTTGA-TTGGATTAGCTCTTATGAGCA
46994890 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
46994923 TTGGTGTGTTG
1 TTGGTGTGTTG
46994934 GAGGGATTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
33 41 0.98
34 1 0.02
ACGTcount: A:0.16, C:0.06, G:0.32, T:0.45
Consensus pattern (33 bp):
TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
Found at i:46994941 original size:33 final size:32
Alignment explanation
Indices: 46994857--46994966 Score: 123
Period size: 33 Copynumber: 3.3 Consensus size: 32
46994847 TACACTTTGT
* *
46994857 TTGGTGTGTTAGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGTT-GATGGATTAGCTCTTATGAGCA
46994890 TTGGTGTGTTGATTGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGA-TGGATTAGCTCTTATGAGCA
* * *
46994923 TTGGTGTGTTGGAGGGATT-GACTCGTGTGAGCA
1 TTGGTGTGTT-GATGGATTAG-CTCTTATGAGCA
46994956 TTTGGTGTGTT
1 -TTGGTGTGTT
46994967 TGGTTGGACT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
32 2 0.03
33 54 0.79
34 12 0.18
ACGTcount: A:0.15, C:0.07, G:0.35, T:0.43
Consensus pattern (32 bp):
TTGGTGTGTTGATGGATTAGCTCTTATGAGCA
Found at i:46995426 original size:11 final size:11
Alignment explanation
Indices: 46995394--46995427 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
46995384 ATATTATACA
46995394 AATGAAATGGT
1 AATGAAATGGT
*
46995405 AA-GAAAAGGT
1 AATGAAATGGT
46995415 AATGAAATGGT
1 AATGAAATGGT
46995426 AA
1 AA
46995428 GTTCATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (11 bp):
AATGAAATGGT
Found at i:46997681 original size:26 final size:25
Alignment explanation
Indices: 46997652--46997732 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 25
46997642 TATCTGAAGC
46997652 TCCTGATTAAAGGCTCTTCGTGAGCT
1 TCCTGATTAAAGGCTCTT-GTGAGCT
* *** *
46997678 TCCTAATTAAAAATTCTTTGTGAACT
1 TCCTGATTAAAGGCTC-TTGTGAGCT
* *
46997704 TCCTGATT-ATGGCTCTTATGAGCT
1 TCCTGATTAAAGGCTCTTGTGAGCT
46997728 TCCTG
1 TCCTG
46997733 TTATTTAGCC
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
24 12 0.29
25 3 0.07
26 25 0.60
27 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (25 bp):
TCCTGATTAAAGGCTCTTGTGAGCT
Found at i:46997792 original size:26 final size:26
Alignment explanation
Indices: 46997761--46997828 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
46997751 CTTCTTGGTA
46997761 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
46997787 GGCTCTTTGTGAGCTTCCCAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAT
*
46997813 GGCTCTTTGCGAGCTT
1 GGCTCTTTGTGAGCTT
46997829 ACTGTTATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCAATTAAT
Found at i:47001450 original size:103 final size:103
Alignment explanation
Indices: 47001271--47001502 Score: 412
Period size: 103 Copynumber: 2.3 Consensus size: 103
47001261 AACCTGTTCT
*
47001271 CTTGCTA-TCTCAGGAAGATAACACTTGGGGCTTAAATCTGCTCCATTGCCGGTACATGGAGATA
1 CTTGCTACT-TCAGGAAGATAAGACTTGGGGCTTAAATCTGCTCCATTGCCGGTACATGGAGATA
47001335 AGATTTGCCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
65 AGATTTGCCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
* *
47001374 CTTGCTACTTCAGGAAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGTCGGTACATGGAGATAA
1 CTTGCTACTTCAGGAAGATAAGACTTGGGGCTTAAATCTGCTCCATTGCCGGTACATGGAGATAA
*
47001439 GATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
66 GATTTGCCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
47001477 CTTGCTACTTCAGGAAGATAAGACTT
1 CTTGCTACTTCAGGAAGATAAGACTT
47001503 CAATCTTCAA
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
103 122 0.99
104 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (103 bp):
CTTGCTACTTCAGGAAGATAAGACTTGGGGCTTAAATCTGCTCCATTGCCGGTACATGGAGATAA
GATTTGCCTTTTCCAATCTTCAATCTTCAGTCTGCTTC
Found at i:47001526 original size:44 final size:44
Alignment explanation
Indices: 47001456--47001542 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
47001446 CTTTTCCAAT
** *
47001456 CTTCAATCTTCAGTCTGCTTCCTTGCTACTTCAG-GAAGATAAGA
1 CTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGAG-AGATAAGA
*
47001500 CTTCAATCTTCAACCTGC-TCTTTTGCTACCTCAGAGAGATAAG
1 CTTCAATCTTCAACCTGCTTC-CTTGCTACCTCAGAGAGATAAG
47001543 GCCTTGAGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.05
44 34 0.92
45 1 0.03
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.33
Consensus pattern (44 bp):
CTTCAATCTTCAACCTGCTTCCTTGCTACCTCAGAGAGATAAGA
Found at i:47001585 original size:148 final size:147
Alignment explanation
Indices: 47001353--47001738 Score: 555
Period size: 148 Copynumber: 2.6 Consensus size: 147
47001343 CTTTTCCAAT
** * *
47001353 CTTCAATCTTCAGTCTGCT-TCCTTGCTACTTCAG-GAAGATAAGGCTTGGGGCTTAAATCTGCT
1 CTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGAG-AGATAAGGCTTGAGGCTTAAATCTGCT
* * * *
47001416 CCATTGTCGGTACATGGAGATAAGATTTGTCTTTTCCAATCTTCAATCTTCAGTCTGCTTCCTTG
64 CCATTGTCGGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
* *
47001481 CTACTTCAGGAAGATAAGA
129 CTACCTCAAGAAGATAAGA
*
47001500 CTTCAATCTTCAACCTGCTCTTTTGCTACCTCAGAGAGATAAGGCCTTGAGGCTTAAATCTGCTC
1 CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGG-CTTGAGGCTTAAATCTGCTC
* *
47001565 TATTG-CTGGTACATGAAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
65 CATTGTC-GGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTG
*
47001629 TTACCTCAAGAAGATAAGA
129 CTACCTCAAGAAGATAAGA
*
47001648 CTTCAATCTTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTT-AGGGCTTAAATCTGCTC
1 CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGA-GGCTTAAATCTGCTC
*
47001712 CATTGTCGATACATGGAGATAAGATTC
65 CATTGTCGGTACATGGAGATAAGATTC
47001739 ATCATCTATG
Statistics
Matches: 214, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
146 1 0.00
147 77 0.36
148 136 0.64
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (147 bp):
CTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTTGAGGCTTAAATCTGCTCC
ATTGTCGGTACATGGAGATAAGATTCGCCTCTTCCAACCTTCAATCTTCAGTCTGCTTCCTTGCT
ACCTCAAGAAGATAAGA
Found at i:47001907 original size:180 final size:177
Alignment explanation
Indices: 47001604--47002007 Score: 562
Period size: 180 Copynumber: 2.3 Consensus size: 177
47001594 CTCTTCCAAC
* * *
47001604 CTTCAATCTTCAGTCTGCTTCCTTGTTACCTCAAGAAGATAAGACTTCAATCTTCAACCTGCTCT
1 CTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGAC-TCAATCTTCAACCTGCTCT
* * *
47001669 CTTGCTACCTTAGAGAGATAAGGCTTAGGGCTTAAATCTGCTCCATTGTCGATACATGGAGATAA
65 CTTGCTACCTCAGAGAGATAAGGCTTAGGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAA
* *
47001734 GATTCATCATCTATGAAGATCTGCTCTGCTGCAACTTCAGGGAGATAAAAT
130 GATTCACCATCT-T-AA-ATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
*
47001785 CTTCAATTCTT-AGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCT
1 CTTCAA-TCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCT
* * *
47001849 CTTGCTACGTCAGATAGATAAGGCTT-GGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATA
65 CTTGCTACCTCAGAGAGATAAGGCTTAGG-GCTAAAATCTGCTCCATTGCCGATACATGGAGATA
* *
47001913 AGATTCACCATCTTCAATCTGCTCTACTGCAACTTCAGGGAGATAAGAT
129 AGATTCACCATCTTAAATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
* * * *
47001962 CTTTAATCTTCAGTCTAC-TCCACTGCAACCTCAGGGAGATAAGACT
1 CTTCAATCTTCAGTCTACTTCC-TTGCTACCTCAGGAAGATAAGACT
47002008 TGTTATGATC
Statistics
Matches: 201, Mismatches: 18, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
176 7 0.03
177 64 0.32
178 1 0.00
179 3 0.01
180 85 0.42
181 37 0.18
182 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (177 bp):
CTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTC
TTGCTACCTCAGAGAGATAAGGCTTAGGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAG
ATTCACCATCTTAAATCTGCTCTACTGCAACTTCAGGGAGATAAAAT
Found at i:47001955 original size:45 final size:44
Alignment explanation
Indices: 47001906--47002008 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 44
47001896 GCCGATACAT
* * *
47001906 GGAGATAAGA-TTCACCATCTTCAATCTGCTCTACTGCAACTTCAG
1 GGAGATAAGACTTCA--ATCTTCAATCTACTCCACTGCAACCTCAG
* *
47001951 GGAGATAAGATCTTTAATCTTCAGTCTACTCCACTGCAACCTCAG
1 GGAGATAAGA-CTTCAATCTTCAATCTACTCCACTGCAACCTCAG
47001996 GGAGATAAGACTT
1 GGAGATAAGACTT
47002009 GTTATGATCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 3 0.06
45 45 0.88
47 3 0.06
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (44 bp):
GGAGATAAGACTTCAATCTTCAATCTACTCCACTGCAACCTCAG
Found at i:47002286 original size:64 final size:64
Alignment explanation
Indices: 47002185--47002440 Score: 359
Period size: 64 Copynumber: 4.0 Consensus size: 64
47002175 TTCATGTATC
* * * * * *
47002185 ATGCTTATGCCAAATAATTAGGATGTTATGATCAAAATGAATCAAATACTCCTAATTAGACGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * *
47002249 ATGCTTATGACACATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
** * *
47002313 ATGCTGATGTCAAATAATTAGGCCGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTA
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
47002377 ATGCTGATGTCAAATAATTAGGATGCTATTATCGAAATGAATCAAATGCACCTAACTAAATGTG
1 ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
47002441 TTATGAATGA
Statistics
Matches: 173, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 173 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (64 bp):
ATGCTGATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:47002504 original size:7 final size:7
Alignment explanation
Indices: 47002492--47002522 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
47002482 TTAAATAATC
47002492 TTTCTTT
1 TTTCTTT
47002499 TTTCTTT
1 TTTCTTT
47002506 TTTCTTT
1 TTTCTTT
*
47002513 TTCCTTT
1 TTTCTTT
47002520 TTT
1 TTT
47002523 TTTAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTCTTT
Found at i:47005022 original size:19 final size:19
Alignment explanation
Indices: 47004998--47005034 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
47004988 AAAAATAGTC
47004998 TAAAGAACAAAAGAATATA
1 TAAAGAACAAAAGAATATA
**
47005017 TAAAGAATGAAAGAATAT
1 TAAAGAACAAAAGAATAT
47005035 TTACTCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.14, T:0.19
Consensus pattern (19 bp):
TAAAGAACAAAAGAATATA
Found at i:47006874 original size:28 final size:28
Alignment explanation
Indices: 47006834--47006893 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
47006824 ACGTTGATTA
47006834 GCTCCGTTAAGAAAATCGAGATGTGACG
1 GCTCCGTTAAGAAAATCGAGATGTGACG
*
47006862 GCTCCGTTAAGAAAATTGAGATGTGACG
1 GCTCCGTTAAGAAAATCGAGATGTGACG
47006890 GCTC
1 GCTC
47006894 TCAAACAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (28 bp):
GCTCCGTTAAGAAAATCGAGATGTGACG
Found at i:47013193 original size:27 final size:26
Alignment explanation
Indices: 47013158--47013269 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
47013148 AGCATGGCTG
* *
47013158 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
47013184 CCAGATACAGATAACCGTGGCAGAACCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
*
47013212 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
47013239 CCAGATCAGATGATTATGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
47013266 CCAG
1 CCAG
47013270 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.07
27 49 0.70
28 16 0.23
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:47014732 original size:24 final size:24
Alignment explanation
Indices: 47014700--47014773 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
47014690 ACACAGTTCA
47014700 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
47014724 CCCTGATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
47014748 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
47014772 CC
1 CC
47014774 AGACAGACTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.22, C:0.42, G:0.05, T:0.31
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:47016095 original size:22 final size:22
Alignment explanation
Indices: 47016067--47016109 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
47016057 GCACTAATGA
47016067 ACAGAGAGCACTAAAGTGCTAT
1 ACAGAGAGCACTAAAGTGCTAT
*
47016089 ACAGAGAGCACTAACGTGCTA
1 ACAGAGAGCACTAAAGTGCTA
47016110 ATAATCAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGCTAT
Found at i:47016125 original size:25 final size:25
Alignment explanation
Indices: 47016060--47016171 Score: 126
Period size: 25 Copynumber: 4.6 Consensus size: 25
47016050 TTATTATGCA
47016060 CTAATGAA-CAGAGAGCACTAA-AGTG
1 CTAAT-AATCAGAGAGCACTAACA-TG
*
47016085 CT-AT-A-CAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTAACATG
* *
47016107 CTAATAATCAGAGATCACTGACATG
1 CTAATAATCAGAGAGCACTAACATG
*
47016132 CTAATAATAAGAGAGCACTAACATG
1 CTAATAATCAGAGAGCACTAACATG
*
47016157 CTAACAATCAGAGAG
1 CTAATAATCAGAGAG
47016172 AGCGCTAAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
22 18 0.24
23 2 0.03
24 3 0.04
25 51 0.69
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.19
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTAACATG
Found at i:47017433 original size:3 final size:3
Alignment explanation
Indices: 47017425--47017487 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
47017415 TCTTTAATTT
** *
47017425 ATA ATA ATA ATA ATA ATA ATA ATA ATA CCA AT- ATC ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
47017469 ATA ATA AT- ATA ATA TATA A
1 ATA ATA ATA ATA ATA -ATA A
47017488 ATATCTTTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.12
3 39 0.78
4 5 0.10
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:47017471 original size:20 final size:19
Alignment explanation
Indices: 47017430--47017490 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
47017420 AATTTATAAT
*
47017430 AATAATAATAATAATA-AT-
1 AATAACAAT-ATAATATATA
* *
47017448 AATACCAATATCATAATATA
1 AATAACAATATAAT-ATATA
*
47017468 AATAATAATATAATATATA
1 AATAACAATATAATATATA
47017487 AATA
1 AATA
47017491 TCTTTTACTT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 4 0.12
18 8 0.24
19 11 0.32
20 11 0.32
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAACAATATAATATATA
Found at i:47017620 original size:20 final size:18
Alignment explanation
Indices: 47017595--47017631 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
47017585 ATAAATTTAT
47017595 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
47017615 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
47017632 AAATTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:47023693 original size:21 final size:21
Alignment explanation
Indices: 47023667--47023709 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
47023657 GGTTCGCTGT
*
47023667 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
47023688 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
47023709 A
1 A
47023710 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:47023709 original size:16 final size:16
Alignment explanation
Indices: 47023690--47023722 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
47023680 TGTATTGGAT
*
47023690 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
47023706 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
47023722 T
1 T
47023723 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:47023767 original size:45 final size:44
Alignment explanation
Indices: 47023701--47023795 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
47023691 GGATTAGAGG
* *
47023701 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
47023746 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
47023790 TGTAAT
1 TGTAAT
47023796 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:47023978 original size:18 final size:17
Alignment explanation
Indices: 47023957--47023991 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47023947 TTATTATTTA
*
47023957 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47023975 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47023992 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47023985 original size:28 final size:27
Alignment explanation
Indices: 47023915--47023987 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
47023905 TTTATTATCA
*
47023915 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
47023943 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
47023970 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
47023988 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:47024119 original size:16 final size:17
Alignment explanation
Indices: 47024093--47024134 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
47024083 AAACATAATT
47024093 ATTATAAATATAT-TTTA
1 ATTA-AAATATATATTTA
47024110 ATTAAAATATATAATTTA
1 ATTAAAATATAT-ATTTA
47024128 A-TAAAAT
1 ATTAAAAT
47024135 TCTTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 10 0.43
18 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAATATATATTTA
Found at i:47024127 original size:18 final size:17
Alignment explanation
Indices: 47024100--47024134 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47024090 ATTATTATAA
*
47024100 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47024118 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47024135 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47024140 original size:143 final size:147
Alignment explanation
Indices: 47023876--47024146 Score: 478
Period size: 143 Copynumber: 1.9 Consensus size: 147
47023866 ATGATTATTG
47023876 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
47023941 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
47024006 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
47024025 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
47024087 ATAATTATTA-TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
47024147 ATATTCTTAT
Statistics
Matches: 120, Mismatches: 2, Indels: 6
0.94 0.02 0.05
Matches are distributed among these distances:
143 49 0.41
144 42 0.35
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:47024209 original size:143 final size:142
Alignment explanation
Indices: 47023888--47024276 Score: 384
Period size: 129 Copynumber: 2.8 Consensus size: 142
47023878 ATTGTTATTT
47023888 AAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAAACATAATTATTA
1 AAATTTTAATAAGATTA---A-TATCAAAAATAAATAATTTAATCATATTTAAACATAATTATTA
* *
47023953 TTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTT
62 TTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA--AGAAATTTGTTA
* ** ***
47024018 TGGTAAATTATTTTATTT
125 TGGTAAATTACTCAAACC
*
47024036 AAATTTTAATAAGATTAATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTA-TAA
1 AAATTTTAATAAGATTAATATCAAAAATAAATAATTTAATCATATTTAAACATAATTATTATTAA
*
47024100 ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATT-A-ATATTCT-TATAT-G-
66 ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAGAAATT-TGT-TATGGT
*
47024160 AATTTACTCAAACC
129 AAATTACTCAAACC
* *** *
47024174 ATAATTATTATTAA-A-T-ATGAT--ACTGT-AA-AATATAA--A-A--T-AACATAATTATTAT
1 A-AATT-TTAATAAGATTAAT-ATCAAAAATAAATAATTTAATCATATTTAAACATAATTATTAT
* *
47024226 TAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
63 TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
47024277 TATTCTTATA
Statistics
Matches: 216, Mismatches: 18, Indels: 32
0.81 0.07 0.12
Matches are distributed among these distances:
128 13 0.06
129 48 0.22
130 1 0.00
131 1 0.00
132 1 0.00
134 6 0.03
135 2 0.01
136 2 0.01
137 2 0.01
138 11 0.05
139 11 0.05
140 10 0.05
143 48 0.22
144 42 0.19
145 1 0.00
148 17 0.08
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (142 bp):
AAATTTTAATAAGATTAATATCAAAAATAAATAATTTAATCATATTTAAACATAATTATTATTAA
ATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAGAAATTTGTTATGGTAA
ATTACTCAAACC
Found at i:47024241 original size:129 final size:129
Alignment explanation
Indices: 47024084--47024316 Score: 414
Period size: 129 Copynumber: 1.8 Consensus size: 129
47024074 ATCATATTTA
* *
47024084 AACATAATTATTATAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAT
1 AACATAATTATTATAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAT
*
47024149 ATTCTTATATGAATTTACTCAAACCATAAT-TATTATTAAATATGATACTGTAAAATATAAAAT
66 ATTCTTATATGAATTTACTCAAACCATAATATATGATTAAATATGATACTGTAAAATATAAAAT
47024212 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTA-TAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
47024277 TATTCTTATATGAATTTACTCAAATCATAATATATGATTA
65 TATTCTTATATGAATTTACTCAAACCATAATATATGATTA
47024317 TAACTAATAT
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
128 13 0.13
129 79 0.80
130 7 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (129 bp):
AACATAATTATTATAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAAT
ATTCTTATATGAATTTACTCAAACCATAATATATGATTAAATATGATACTGTAAAATATAAAAT
Found at i:47024250 original size:18 final size:17
Alignment explanation
Indices: 47024229--47024263 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47024219 TTATTATTAA
47024229 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
47024247 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
47024264 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:47024326 original size:17 final size:16
Alignment explanation
Indices: 47024304--47024350 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
47024294 ACTCAAATCA
47024304 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
47024321 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
47024335 TAAATATATGATTTAA
1 T-AATATATGATTTAA
47024351 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:47024351 original size:17 final size:17
Alignment explanation
Indices: 47024323--47024356 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47024313 ATTATAACTA
*
47024323 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
47024340 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
47024357 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:47024499 original size:93 final size:91
Alignment explanation
Indices: 47024389--47024582 Score: 284
Period size: 92 Copynumber: 2.1 Consensus size: 91
47024379 GATTATAGTT
* *
47024389 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTA-ATATAATTAT-ATAATAATATATAATTTC
* *
47024452 ATAAAATTCTTGATAATAAAAATTTTCTTA
63 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
47024482 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAGTGATATATAATTTCATA
1 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTTCATA
47024547 AAATTCTTAATAATAAAATGTTCTTA
66 AAATTCTTAATAATAAAATGTTCTTA
47024573 TATGAATTTA
1 TATGAATTTA
47024583 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 21 0.23
92 40 0.43
93 29 0.31
94 3 0.03
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (91 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTTCATA
AAATTCTTAATAATAAAATGTTCTTA
Found at i:47025995 original size:11 final size:11
Alignment explanation
Indices: 47025981--47026007 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
47025971 AAAAATCAAT
47025981 ACAAAAGTTTC
1 ACAAAAGTTTC
47025992 ACAAAAGTTTC
1 ACAAAAGTTTC
47026003 ACAAA
1 ACAAA
47026008 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:47037224 original size:13 final size:13
Alignment explanation
Indices: 47037202--47037234 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47037192 AAGGATTTGT
47037202 TTAT-TAAACTAA
1 TTATCTAAACTAA
47037214 TTATCTAAACTAA
1 TTATCTAAACTAA
*
47037227 TTAACTAA
1 TTATCTAA
47037235 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:47038334 original size:21 final size:22
Alignment explanation
Indices: 47038310--47038350 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
47038300 CTGGATTAAG
47038310 AGTACCAAA-ATCCATAAATCT
1 AGTACCAAACATCCATAAATCT
**
47038331 AGTAGTAAACATCCATAAAT
1 AGTACCAAACATCCATAAAT
47038351 ATGCTAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (22 bp):
AGTACCAAACATCCATAAATCT
Found at i:47040116 original size:6 final size:5
Alignment explanation
Indices: 47040087--47040178 Score: 66
Period size: 5 Copynumber: 17.8 Consensus size: 5
47040077 TATGTCTTTC
* * *
47040087 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAG AAAAGA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT AAAA-T
47040135 AAAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAAA- ATAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT A-AAAT AAAA
47040179 AAATAATAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.04
4 5 0.07
5 36 0.51
6 27 0.38
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:47046317 original size:604 final size:604
Alignment explanation
Indices: 47045169--47046379 Score: 2386
Period size: 604 Copynumber: 2.0 Consensus size: 604
47045159 TACTCGCTTG
*
47045169 ATAAGCTGGCAAAATCATACATTTCTCAGATTGTGAGATTACATGGTGTGCCTATATTTATTATT
1 ATAAGCTGGCAAAATCATACATTTCTCAAATTGTGAGATTACATGGTGTGCCTATATTTATTATT
47045234 TTGGATAGAGATTCGAGGTTTACATCGCGGTTTTGGAAGAAACTGCAAGATGCACTAGGTACAAA
66 TTGGATAGAGATTCGAGGTTTACATCGCGGTTTTGGAAGAAACTGCAAGATGCACTAGGTACAAA
47045299 ATTACATTTTAGTACTACTTTCCATCTGCAAACAGATGGCCAGTCTGAGTGAATCATTCAGATAC
131 ATTACATTTTAGTACTACTTTCCATCTGCAAACAGATGGCCAGTCTGAGTGAATCATTCAGATAC
47045364 TTGAGGATATGTTGAGATGTTGCATTCTCGAGTTTGAAGGTACGTGGGAACGATACCTACCTCTG
196 TTGAGGATATGTTGAGATGTTGCATTCTCGAGTTTGAAGGTACGTGGGAACGATACCTACCTCTG
*
47045429 ATTGAATTTGCGTATAATAATAGCTTTCAATCGAGTATCAAAATGGTACCTTATGAGGCTTTGTA
261 ATTGAATTTGCGTATAATAATAGCTTTCAATCGAGTATCAAAAAGGTACCTTATGAGGCTTTGTA
47045494 TGGTCGTAAATGTCGTATGCAATTGTACTGGACTGAGCTCAGTGAAAATAAGATACACGGGGTTG
326 TGGTCGTAAATGTCGTATGCAATTGTACTGGACTGAGCTCAGTGAAAATAAGATACACGGGGTTG
*
47045559 ACTTGATCAGAGAAACTGAACAGAAAGTGAAAGTAATCCGTGAAAGTCTGAAAATAGCATCGGAC
391 ACTTGATCAGAGAAACTGAACAGAAAGTGAAAGTAATCCGTGAAAGTCTGAAAATAGCATCAGAC
47045624 CGTCAGAAATCATATGCGAACTTGAAACGTAAAGACATAGAATTTCAGATCGAAGATAAAGTATT
456 CGTCAGAAATCATATGCGAACTTGAAACGTAAAGACATAGAATTTCAGATCGAAGATAAAGTATT
47045689 CTTGAAAGTCTCATTGTGGAAGAAAATATTCAGATTTGGTCGTAAAGCAAATTGAGTCCGAGATT
521 CTTGAAAGTCTCATTGTGGAAGAAAATATTCAGATTTGGTCGTAAAGCAAATTGAGTCCGAGATT
47045754 TATTGGGCCGTATGAAATT
586 TATTGGGCCGTATGAAATT
47045773 ATAAGCTGGCAAAATCATACATTTCTCAAATTGTGAGATTACATGGTGTGCCTATATTTATTATT
1 ATAAGCTGGCAAAATCATACATTTCTCAAATTGTGAGATTACATGGTGTGCCTATATTTATTATT
47045838 TTGGATAGAGATTCGAGGTTTACATCGCGGTTTTGGAAGAAACTGCAAGATGCACTAGGTACAAA
66 TTGGATAGAGATTCGAGGTTTACATCGCGGTTTTGGAAGAAACTGCAAGATGCACTAGGTACAAA
*
47045903 ATTACATTTTAGTACTACTTTCCATCTGCAAATAGATGGCCAGTCTGAGTGAATCATTCAGATAC
131 ATTACATTTTAGTACTACTTTCCATCTGCAAACAGATGGCCAGTCTGAGTGAATCATTCAGATAC
47045968 TTGAGGATATGTTGAGATGTTGCATTCTCGAGTTTGAAGGTACGTGGGAACGATACCTACCTCTG
196 TTGAGGATATGTTGAGATGTTGCATTCTCGAGTTTGAAGGTACGTGGGAACGATACCTACCTCTG
47046033 ATTGAATTTGCGTATAATAATAGCTTTCAATCGAGTATCAAAAAGGTACCTTATGAGGCTTTGTA
261 ATTGAATTTGCGTATAATAATAGCTTTCAATCGAGTATCAAAAAGGTACCTTATGAGGCTTTGTA
47046098 TGGTCGTAAATGTCGTATGCAATTGTACTGGACTGAGCTCAGTGAAAATAAGATACACGGGGTTG
326 TGGTCGTAAATGTCGTATGCAATTGTACTGGACTGAGCTCAGTGAAAATAAGATACACGGGGTTG
47046163 ACTTGATCAGAGAAACTGAACAGAAAGTGAAAGTAATCCGTGAAAGTCTGAAAATAGCATCAGAC
391 ACTTGATCAGAGAAACTGAACAGAAAGTGAAAGTAATCCGTGAAAGTCTGAAAATAGCATCAGAC
47046228 CGTCAGAAATCATATGCGAACTTGAAACGTAAAGACATAGAATTTCAGATCGAAGATAAAGTATT
456 CGTCAGAAATCATATGCGAACTTGAAACGTAAAGACATAGAATTTCAGATCGAAGATAAAGTATT
47046293 CTTGAAAGTCTCATTGTGGAAGAAAATATTCAGATTTGGTCGTAAAGCAAATTGAGTCCGAGATT
521 CTTGAAAGTCTCATTGTGGAAGAAAATATTCAGATTTGGTCGTAAAGCAAATTGAGTCCGAGATT
47046358 TATTGGGCCGTATGAAATT
586 TATTGGGCCGTATGAAATT
47046377 ATA
1 ATA
47046380 GAGCGTATTG
Statistics
Matches: 603, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
604 603 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (604 bp):
ATAAGCTGGCAAAATCATACATTTCTCAAATTGTGAGATTACATGGTGTGCCTATATTTATTATT
TTGGATAGAGATTCGAGGTTTACATCGCGGTTTTGGAAGAAACTGCAAGATGCACTAGGTACAAA
ATTACATTTTAGTACTACTTTCCATCTGCAAACAGATGGCCAGTCTGAGTGAATCATTCAGATAC
TTGAGGATATGTTGAGATGTTGCATTCTCGAGTTTGAAGGTACGTGGGAACGATACCTACCTCTG
ATTGAATTTGCGTATAATAATAGCTTTCAATCGAGTATCAAAAAGGTACCTTATGAGGCTTTGTA
TGGTCGTAAATGTCGTATGCAATTGTACTGGACTGAGCTCAGTGAAAATAAGATACACGGGGTTG
ACTTGATCAGAGAAACTGAACAGAAAGTGAAAGTAATCCGTGAAAGTCTGAAAATAGCATCAGAC
CGTCAGAAATCATATGCGAACTTGAAACGTAAAGACATAGAATTTCAGATCGAAGATAAAGTATT
CTTGAAAGTCTCATTGTGGAAGAAAATATTCAGATTTGGTCGTAAAGCAAATTGAGTCCGAGATT
TATTGGGCCGTATGAAATT
Found at i:47050157 original size:25 final size:25
Alignment explanation
Indices: 47050122--47050208 Score: 120
Period size: 25 Copynumber: 3.5 Consensus size: 25
47050112 ACATATGTGC
* * *
47050122 TAATCAAAGAGCACTAACGTGTTAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
47050147 TAATCAGAGAGCACTGACGTGCAAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
47050172 TAATGAGAGAGCACTGACGTGCTAA
1 TAATCAGAGAGCACTGACGTGCTAA
*
47050197 TAATCATAGAGC
1 TAATCAGAGAGC
47050209 GCACTAAGGT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (25 bp):
TAATCAGAGAGCACTGACGTGCTAA
Found at i:47065563 original size:15 final size:16
Alignment explanation
Indices: 47065527--47065563 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
47065517 ACATATCATT
47065527 TATTTCATTATATCAA
1 TATTTCATTATATCAA
47065543 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
47065557 TAGTTTC
1 TA-TTTC
47065564 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:47074423 original size:13 final size:13
Alignment explanation
Indices: 47074405--47074431 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47074395 TGATTCAGGC
47074405 AACTTTTGTTTGG
1 AACTTTTGTTTGG
47074418 AACTTTTGTTTGG
1 AACTTTTGTTTGG
47074431 A
1 A
47074432 CCATTTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (13 bp):
AACTTTTGTTTGG
Found at i:47075604 original size:17 final size:16
Alignment explanation
Indices: 47075577--47075609 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
47075567 ATTCATAATA
47075577 TAATTAATTTTAATTT
1 TAATTAATTTTAATTT
47075593 TAATTCAATTTTAATTT
1 TAATT-AATTTTAATTT
47075610 GGGTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
TAATTAATTTTAATTT
Found at i:47076484 original size:25 final size:25
Alignment explanation
Indices: 47076450--47076505 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
47076440 ACTAATGACT
47076450 TAATTATTTAAATGGATTGAAATTG
1 TAATTATTTAAATGGATTGAAATTG
47076475 TAATTATTTAAATGGATTGAAATTG
1 TAATTATTTAAATGGATTGAAATTG
47076500 TAATTA
1 TAATTA
47076506 ATTGACAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TAATTATTTAAATGGATTGAAATTG
Found at i:47079287 original size:46 final size:44
Alignment explanation
Indices: 47079144--47079287 Score: 98
Period size: 46 Copynumber: 3.1 Consensus size: 44
47079134 CCCGCCCATA
* * *
47079144 AGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
47079193 --CGAACTCGGACTCAACTCAAGGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
47079236 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
47079283 AGTGA
1 AGTGA
47079288 CATGTCACTT
Statistics
Matches: 74, Mismatches: 11, Indels: 23
0.69 0.10 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 26 0.35
48 4 0.05
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:47082153 original size:21 final size:23
Alignment explanation
Indices: 47082129--47082177 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
47082119 TATTTTAATA
* *
47082129 TTTATTTAGTGTC-TA-TGAGAT
1 TTTATTTAGGGTCGTATTGAAAT
47082150 TTTA-TTAGGGTCGTATTGAAAT
1 TTTATTTAGGGTCGTATTGAAAT
47082172 TTTATT
1 TTTATT
47082178 AAGAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 7 0.30
21 6 0.26
22 9 0.39
23 1 0.04
ACGTcount: A:0.24, C:0.04, G:0.18, T:0.53
Consensus pattern (23 bp):
TTTATTTAGGGTCGTATTGAAAT
Found at i:47083224 original size:40 final size:40
Alignment explanation
Indices: 47083167--47083438 Score: 253
Period size: 40 Copynumber: 6.8 Consensus size: 40
47083157 AATTATTGAA
* ** *
47083167 TGTTTGCACATGCGTGCCATTGTTTGTACTTCGATACCCC
1 TGTTTGCACATACGTGCCCCTGATTGTACTTCGATACCCC
* * *
47083207 TATTTGCACATACGTGCCCCTGATTGTACTTCAATACCCA
1 TGTTTGCACATACGTGCCCCTGATTGTACTTCGATACCCC
* *
47083247 TGTTTGCACATGCATGCCCCT-ATTTGTACTTC-AGTACCCC
1 TGTTTGCACATACGTGCCCCTGA-TTGTACTTCGA-TACCCC
* * * * *
47083287 TTTTTGTACATA-GATGCCCCAGATTGTACTTCGGTACCCT
1 TGTTTGCACATACG-TGCCCCTGATTGTACTTCGATACCCC
* ** *
47083327 TGTTTGCACATACGTGCCCCTGATTGCACTTCGGCACCCT
1 TGTTTGCACATACGTGCCCCTGATTGTACTTCGATACCCC
* * * * *
47083367 TGTTTGCACCTAAGTGCACCTGATTGTACTTTGATACCGC
1 TGTTTGCACATACGTGCCCCTGATTGTACTTCGATACCCC
* ** *
47083407 TGTTTGCATATACGTGCCTTTGTTTGTACTTC
1 TGTTTGCACATACGTGCCCCTGATTGTACTTC
47083439 AGTACCTTTA
Statistics
Matches: 186, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
39 2 0.01
40 182 0.98
41 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (40 bp):
TGTTTGCACATACGTGCCCCTGATTGTACTTCGATACCCC
Found at i:47083286 original size:20 final size:20
Alignment explanation
Indices: 47083189--47083295 Score: 60
Period size: 20 Copynumber: 5.3 Consensus size: 20
47083179 CGTGCCATTG
47083189 TTTGTACTTC-GATACCCCTA
1 TTTGTACTTCAG-TACCCCTA
* * *
47083209 TTTGCACAT-ACGTGCCCCTGA
1 TTTGTACTTCA-GTACCCCT-A
* * *
47083230 -TTGTACTTCAATACCCATG
1 TTTGTACTTCAGTACCCCTA
* * *
47083249 TTTGCACATGCA-TGCCCCTA
1 TTTGTAC-TTCAGTACCCCTA
*
47083269 TTTGTACTTCAGTACCCCTT
1 TTTGTACTTCAGTACCCCTA
47083289 TTTGTAC
1 TTTGTAC
47083296 ATAGATGCCC
Statistics
Matches: 62, Mismatches: 18, Indels: 14
0.66 0.19 0.15
Matches are distributed among these distances:
19 3 0.05
20 53 0.85
21 6 0.10
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (20 bp):
TTTGTACTTCAGTACCCCTA
Found at i:47083306 original size:20 final size:21
Alignment explanation
Indices: 47083260--47083306 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
47083250 TTGCACATGC
*
47083260 ATGCCCCTATTTGTACTTCAG
1 ATGCCCCTATTTGTACATCAG
* *
47083281 -TACCCCTTTTTGTACAT-AG
1 ATGCCCCTATTTGTACATCAG
47083300 ATGCCCC
1 ATGCCCC
47083307 AGATTGTACT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.36
Consensus pattern (21 bp):
ATGCCCCTATTTGTACATCAG
Found at i:47083373 original size:20 final size:20
Alignment explanation
Indices: 47083314--47083375 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
47083304 CCCAGATTGT
*
47083314 ACTTCGGTACCCTTGTTTGC
1 ACTTCGGCACCCTTGTTTGC
* *
47083334 ACATACGTGC-CCC-TGATTGC
1 AC-TTCG-GCACCCTTGTTTGC
47083354 ACTTCGGCACCCTTGTTTGC
1 ACTTCGGCACCCTTGTTTGC
47083374 AC
1 AC
47083376 CTAAGTGCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 18 0.55
21 6 0.18
22 1 0.03
ACGTcount: A:0.15, C:0.34, G:0.19, T:0.32
Consensus pattern (20 bp):
ACTTCGGCACCCTTGTTTGC
Found at i:47083434 original size:120 final size:120
Alignment explanation
Indices: 47083167--47083444 Score: 285
Period size: 120 Copynumber: 2.3 Consensus size: 120
47083157 AATTATTGAA
* *
47083167 TGTTTGCACATGCGTGCCATTGTTTGTACTTCGATACCCCTATTTGCACATACGTGCCCCTGATT
1 TGTTTGCACATACGTGCCATTGTTTGTACTTCGGTACCCCTATTTGCACATACGTGCCCCTGATT
* * * *
47083232 GTACTTCAATACCCATGTTTGCACATGCATGCCCCTATTTGTACTTCAGTACCCC
66 GCACTTCAACACCCATGTTTGCACATGAATGCACCTATTTGTACTTCAGTACCCC
* * *** * * *
47083287 TTTTTGTACATA-GATGCCCCAGATTGTACTTCGGTACCCTTGTTTGCACATACGTGCCCCTGAT
1 TGTTTGCACATACG-TGCCATTGTTTGTACTTCGGTACCCCTATTTGCACATACGTGCCCCTGAT
** * * * *
47083351 TGCACTTCGGCACCCTTGTTTGCACCT-AAGTGCACCTGA-TTGTACTT-TGATACCGC
65 TGCACTTCAACACCCATGTTTGCACATGAA-TGCACCT-ATTTGTACTTCAG-TACCCC
* * *
47083407 TGTTTGCATATACGTGCCTTTGTTTGTACTTCAGTACC
1 TGTTTGCACATACGTGCCATTGTTTGTACTTCGGTACC
47083445 TTTAAATGCA
Statistics
Matches: 125, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
119 3 0.02
120 120 0.96
121 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (120 bp):
TGTTTGCACATACGTGCCATTGTTTGTACTTCGGTACCCCTATTTGCACATACGTGCCCCTGATT
GCACTTCAACACCCATGTTTGCACATGAATGCACCTATTTGTACTTCAGTACCCC
Found at i:47089191 original size:19 final size:20
Alignment explanation
Indices: 47089149--47089192 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
47089139 CTATATTAAC
** *
47089149 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
47089169 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
47089188 ACAGT
1 ACAGT
47089193 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:47097817 original size:40 final size:40
Alignment explanation
Indices: 47097773--47097960 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
47097763 GCAAACACAT
* *
47097773 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
47097813 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
*
47097853 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* * * *
47097893 TTGCCTTCGGGTCATATCCCGGACATATCAACTTGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
47097933 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
47097961 TCCAATGCTC
Statistics
Matches: 137, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:47102028 original size:28 final size:27
Alignment explanation
Indices: 47101971--47102122 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
47101961 TAAATTGTGC
*
47101971 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
47101998 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
47102026 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
47102053 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
47102081 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
47102108 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47102123 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:47102035 original size:55 final size:55
Alignment explanation
Indices: 47101971--47102122 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
47101961 TAAATTGTGC
*
47101971 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
47102026 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
47102081 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
47102123 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:47119690 original size:40 final size:40
Alignment explanation
Indices: 47119632--47119903 Score: 237
Period size: 40 Copynumber: 6.8 Consensus size: 40
47119622 ATAACCACAA
* * * *
47119632 GCACAATTGCCTTTGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
47119672 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
47119712 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
47119752 GTATAAATGCCTTCGGGTCTTAGCCCTGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
47119792 GTATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
47119832 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
47119872 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
47119904 CATTGAAATG
Statistics
Matches: 217, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 212 0.98
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:47119716 original size:80 final size:79
Alignment explanation
Indices: 47119612--47119902 Score: 343
Period size: 80 Copynumber: 3.6 Consensus size: 79
47119602 TCTTCGGAAT
* * * * * * * * *
47119612 TTAG-CCGGATATAACCACAAGCACAATTGCCTTTGGGTCTTAACCCGGGT-ATAGCAACTCGCA
1 TTAGCCCGGATA-AATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCA
*
47119675 CAAATGCCTTCGGGTC
64 TAAATGCCTTCGGGTC
* * *
47119691 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGTAT
1 TTAGCCCGGATAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
47119756 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
47119771 TTAGCCCTGATAAAATCACTAGTATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 TTAGCCCGGAT-AAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
*
47119836 AAATGCCTTCGGGAC
65 AAATGCCTTCGGGTC
* *
47119851 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 TTAGCCCGGAT-AAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
47119903 TCATTGAAAT
Statistics
Matches: 185, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
79 6 0.03
80 172 0.93
81 7 0.04
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATA
AATGCCTTCGGGTC
Found at i:47119840 original size:120 final size:120
Alignment explanation
Indices: 47119676--47119902 Score: 366
Period size: 120 Copynumber: 1.9 Consensus size: 120
47119666 CAACTCGCAC
* * * *
47119676 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA
* * *
47119741 TAAAATCACTAGTATAAATGCCTTCGGGTCTTAGCCCTGATAAAATCACTAGTAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGTAT
*
47119796 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGGAT-AAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
47119860 ATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
65 ATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
47119903 TCATTGAAAT
Statistics
Matches: 98, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
120 94 0.96
121 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (120 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA
TAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGTAT
Found at i:47128381 original size:23 final size:23
Alignment explanation
Indices: 47128355--47128405 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
47128345 CATTTCTGAT
47128355 ATTGTAAGATTGTACGGGGTGCC
1 ATTGTAAGATTGTACGGGGTGCC
*
47128378 ATTGTAAGATTGTATGGGGTGCC
1 ATTGTAAGATTGTACGGGGTGCC
47128401 ATTGT
1 ATTGT
47128406 CTATTGTGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.10, G:0.33, T:0.35
Consensus pattern (23 bp):
ATTGTAAGATTGTACGGGGTGCC
Found at i:47130643 original size:42 final size:43
Alignment explanation
Indices: 47130575--47130687 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 43
47130565 ATCGATTTGA
*
47130575 GATTTACGTGTAAGACCATGTTTGGGACA-TCAACATCG-TATTT
1 GATTT-CGTGTAAGACCATGTCTGGGACAGT-AACATCGATATTT
* * **
47130618 GATTTCGTGTAAGACCTTGTCTGGGATAGTGGCATCGATATTT
1 GATTTCGTGTAAGACCATGTCTGGGACAGTAACATCGATATTT
* * *
47130661 GATTGCATGTAAGACCACGTCTGGGAC
1 GATTTCGTGTAAGACCATGTCTGGGAC
47130688 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTGGGACAGTAACATCGATATTT
Found at i:47131081 original size:28 final size:28
Alignment explanation
Indices: 47131041--47131098 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
47131031 AATTTATTTG
*
47131041 TATATAGCTTACTAAGCTTTCAAAAGCT
1 TATATAGCTTACTAAGCTTTCAAAACCT
47131069 TATATAGCTTACTAAGCTTTCAAAACCT
1 TATATAGCTTACTAAGCTTTCAAAACCT
47131097 TA
1 TA
47131099 CTTTGTGTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (28 bp):
TATATAGCTTACTAAGCTTTCAAAACCT
Found at i:47137625 original size:20 final size:20
Alignment explanation
Indices: 47137592--47137679 Score: 63
Period size: 20 Copynumber: 4.4 Consensus size: 20
47137582 AAGGGTACCA
*
47137592 AAGTACAAACAGGGGCA-CG
1 AAGTACAAATAGGGGCACCG
* * *
47137611 TATGTGCAAATAGGGGTACCG
1 -AAGTACAAATAGGGGCACCG
*
47137632 AAGTACAAATAGGGGCA-TG
1 AAGTACAAATAGGGGCACCG
* * * *
47137651 TAGGTACAAACAGGGGTACCA
1 -AAGTACAAATAGGGGCACCG
47137672 AAGTACAA
1 AAGTACAA
47137680 TCAAGGGCAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
19 1 0.02
20 48 0.94
21 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.30, T:0.15
Consensus pattern (20 bp):
AAGTACAAATAGGGGCACCG
Found at i:47137628 original size:40 final size:40
Alignment explanation
Indices: 47137584--47137860 Score: 320
Period size: 40 Copynumber: 6.9 Consensus size: 40
47137574 ATGCGTTAAA
*
47137584 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* * * * *
47137624 GGGTACCGAAGTACAAATAGGGGCATGTAGGTACAAACAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* * * * *
47137664 GGGTACCAAAGTACAATCAAGGGCATGTACGTGCAGACAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* * * ** *
47137704 GGGTACTAAAGAACAATCAGGCACACATATGTGCAAACAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* * *
47137744 GGGTACTAAAGTACAAACAAGGGCACGTATGTGCAAACAA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* * * *
47137784 GGATACCGAAGTACAATCAAGGGCACGTATGTGCAAACAG
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
* *
47137824 GGGTACCGAAGTACAACCAGGGGCACGTATGTGCAAA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAA
47137861 TATTGGTATC
Statistics
Matches: 200, Mismatches: 37, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.38, C:0.19, G:0.29, T:0.15
Consensus pattern (40 bp):
GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAACAG
Found at i:47137760 original size:20 final size:20
Alignment explanation
Indices: 47137584--47137762 Score: 60
Period size: 20 Copynumber: 8.9 Consensus size: 20
47137574 ATGCGTTAAA
*
47137584 GGGTACCAAAGTACAAACAG
1 GGGTACTAAAGTACAAACAG
* * * *
47137604 GGGCACGT-ATGTGCAAATAG
1 GGGTAC-TAAAGTACAAACAG
** *
47137624 GGGTACCGAAGTACAAATAG
1 GGGTACTAAAGTACAAACAG
* * *
47137644 GGGCA-TGTAGGTACAAACAG
1 GGGTACT-AAAGTACAAACAG
* * *
47137664 GGGTACCAAAGTACAATCAA
1 GGGTACTAAAGTACAAACAG
* * * * *
47137684 GGGCA-TGTACGTGCAGACAG
1 GGGTACT-AAAGTACAAACAG
* *
47137704 GGGTACTAAAGAACAATCAG
1 GGGTACTAAAGTACAAACAG
*** * *
47137724 GCACAC-ATATGTGCAAACAG
1 GGGTACTA-AAGTACAAACAG
47137744 GGGTACTAAAGTACAAACA
1 GGGTACTAAAGTACAAACA
47137763 AGGGCACGTA
Statistics
Matches: 104, Mismatches: 47, Indels: 16
0.62 0.28 0.10
Matches are distributed among these distances:
19 1 0.01
20 101 0.97
21 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (20 bp):
GGGTACTAAAGTACAAACAG
Found at i:47137780 original size:20 final size:20
Alignment explanation
Indices: 47137757--47137860 Score: 77
Period size: 20 Copynumber: 5.2 Consensus size: 20
47137747 TACTAAAGTA
47137757 CAAACAAGGGCACGTATGTG
1 CAAACAAGGGCACGTATGTG
** * *
47137777 CAAACAAGGATACCG-AAGTA
1 CAAACAAGGGCA-CGTATGTG
*
47137797 CAATCAAGGGCACGTATGTG
1 CAAACAAGGGCACGTATGTG
* * * *
47137817 CAAACAGGGGTACCG-AAGTA
1 CAAACAAGGGCA-CGTATGTG
* *
47137837 CAACCAGGGGCACGTATGTG
1 CAAACAAGGGCACGTATGTG
47137857 CAAA
1 CAAA
47137861 TATTGGTATC
Statistics
Matches: 61, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
19 4 0.07
20 53 0.87
21 4 0.07
ACGTcount: A:0.38, C:0.21, G:0.28, T:0.13
Consensus pattern (20 bp):
CAAACAAGGGCACGTATGTG
Found at i:47137879 original size:120 final size:118
Alignment explanation
Indices: 47137584--47137902 Score: 350
Period size: 120 Copynumber: 2.7 Consensus size: 118
47137574 ATGCGTTAAA
*
47137584 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTACCGAAGTACAAATAGGGGCA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CGAAGTACAAA-AAGGGCA
* * * * * * *
47137649 TGTAGGTACAAACAGGGGTACCAAAGTACAATCAAGGGCATGTACGTGCAGACAG
64 CGTATGTGCAAACAAGGATACCAAAGTACAATCAAGGGCACGTACGTGCAAACAG
* * * ** * * *
47137704 GGGTACTAAAGAACAATCAGGCACACATATGTGCAAACAGGGGTACTAAAGTACAAACAAGGGCA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTAC-GAAGTACAAA-AAGGGCA
* *
47137769 CGTATGTGCAAACAAGGATACCGAAGTACAATCAAGGGCACGTATGTGCAAACAG
64 CGTATGTGCAAACAAGGATACCAAAGTACAATCAAGGGCACGTACGTGCAAACAG
* * ** * * *
47137824 GGGTACCGAAGTACAACCAGGGGCACGTATGTGCAAATATTGGTATCGAACTACAAATAGTGACA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTA-CGAAGTACAAAAAG-GGCA
*
47137889 CATATGTGCAAACA
64 CGTATGTGCAAACA
47137903 TTCACTAATT
Statistics
Matches: 162, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
119 3 0.02
120 158 0.98
121 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.16
Consensus pattern (118 bp):
GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTACGAAGTACAAAAAGGGCACG
TATGTGCAAACAAGGATACCAAAGTACAATCAAGGGCACGTACGTGCAAACAG
Found at i:47137895 original size:80 final size:80
Alignment explanation
Indices: 47137584--47137902 Score: 331
Period size: 80 Copynumber: 4.0 Consensus size: 80
47137574 ATGCGTTAAA
* * *
47137584 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAAATAGGGGTACCGAAGTACAAAT-AGGGGC
1 GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAAACAGGGGTACCGAAGTACAAATCA-GGAC
** * *
47137648 ATGTAGGTACAAACAG
65 ACATATGTGCAAACAG
* * * * ** *
47137664 GGGTACCAAAGTACAATCAAGGGCATGTACGTGCAGACAGGGGTACTAAAGAAC-AATCAGGCAC
1 GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAAACAGGGGTACCGAAGTACAAATCAGG-AC
47137728 ACATATGTGCAAACAG
65 ACATATGTGCAAACAG
* * * *
47137744 GGGTACTAAAGTACAAACAAGGGCACGTATGTGCAAACAAGGATACCGAAGTAC-AATCAAGGGC
1 GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAAACAGGGGTACCGAAGTACAAATC-AGGAC
*
47137808 ACGTATGTGCAAACAG
65 ACATATGTGCAAACAG
* * * * ** * *
47137824 GGGTACCGAAGTACAACCAGGGGCACGTATGTGCAAATATTGGTATCGAACTACAAAT-AGTGAC
1 GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAAACAGGGGTACCGAAGTACAAATCAG-GAC
47137888 ACATATGTGCAAACA
65 ACATATGTGCAAACA
47137903 TTCACTAATT
Statistics
Matches: 196, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
79 7 0.04
80 183 0.93
81 6 0.03
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.16
Consensus pattern (80 bp):
GGGTACCAAAGTACAAACAAGGGCACGTATGTGCAAACAGGGGTACCGAAGTACAAATCAGGACA
CATATGTGCAAACAG
Found at i:47137977 original size:21 final size:21
Alignment explanation
Indices: 47137951--47137993 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
47137941 AATGTAAAAG
47137951 TACAAATAGAAATTCATTCAC
1 TACAAATAGAAATTCATTCAC
47137972 TACAAATAGAAATTCATTCAC
1 TACAAATAGAAATTCATTCAC
47137993 T
1 T
47137994 TATTGGAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (21 bp):
TACAAATAGAAATTCATTCAC
Found at i:47139594 original size:38 final size:38
Alignment explanation
Indices: 47139543--47139619 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
47139533 GCAAGGAGTG
47139543 AAAATATTGGCTTTGCATGTCAAATACCCCTTTTTTAT
1 AAAATATTGGCTTTGCATGTCAAATACCCCTTTTTTAT
47139581 AAAATATTGGCTTTGCATGTCAAATACCCCTTTTTTAT
1 AAAATATTGGCTTTGCATGTCAAATACCCCTTTTTTAT
47139619 A
1 A
47139620 CATAGTGGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (38 bp):
AAAATATTGGCTTTGCATGTCAAATACCCCTTTTTTAT
Done.