Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 146 of 320
Found at i:47953002 original size:46 final size:46
Alignment explanation
Indices: 47952952--47953127 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
47952942 TGGTTGAGCA
47952952 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
47952998 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
47953043 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * **
47953091 CCCGAGCTCGTTGATTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47953128 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 60 0.56
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:47953110 original size:93 final size:93
Alignment explanation
Indices: 47952949--47953118 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
47952939 GGATGGTTGA
* *
47952949 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
47953014 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
47953042 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
47953107 TGAGTCCGAGTT
66 TGAGTCCGAGTT
47953119 TGCTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47958109 original size:52 final size:52
Alignment explanation
Indices: 47958031--47958333 Score: 469
Period size: 52 Copynumber: 5.9 Consensus size: 52
47958021 TATTTGTACC
*
47958031 TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGCTGA
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
47958083 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
47958135 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC--A
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
* ** * * *
47958185 TCAGCCACA-----G-TATGAGAGCCAGTGTAAGACATGTTTGGGACATGCTGA
1 T-TGATA-ATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
47958233 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
47958285 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC
47958334 ATCAGCCACA
Statistics
Matches: 228, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
46 33 0.14
47 3 0.01
48 2 0.01
50 2 0.01
51 3 0.01
52 185 0.81
ACGTcount: A:0.26, C:0.10, G:0.32, T:0.33
Consensus pattern (52 bp):
TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
Found at i:47958226 original size:46 final size:47
Alignment explanation
Indices: 47958159--47958472 Score: 212
Period size: 46 Copynumber: 6.5 Consensus size: 47
47958149 TATGTGTGCT
47958159 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAG-TATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGATATGAGAGCC
* ** * * *
47958205 AGTGTAAGACATGTTTGGGACATGCTGAT-TGATA-ATGGGTGATATGTGTGCT
1 AGTGTAAGACATGTTTGGGACATGC--ATCAGCCACA-----GATATGAGAGCC
* ** * * *
47958257 AGTGTAAGACATGTTTGGGACATGCTGAT-TGATA-ATGGGTGATATGTGTGCT
1 AGTGTAAGACATGTTTGGGACATGC--ATCAGCCACA-----GATATGAGAGCC
47958309 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAG-TATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGATATGAGAGCC
* * *
47958355 AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCAC-AGATA-TGAGAGCC
* * ** * * *
47958403 AGTGTAATACATGTTTGGGACATGCATC-GACATTGAGACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGATATGAGAGCC
* *
47958449 AGTGTAAGACATGTCTGGGGCATG
1 AGTGTAAGACATGTTTGGGACATG
47958473 AATCGGCCTC
Statistics
Matches: 226, Mismatches: 28, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.00
46 92 0.41
47 7 0.03
48 34 0.15
49 2 0.01
50 2 0.01
51 3 0.01
52 85 0.38
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGATATGAGAGCC
Found at i:47958252 original size:98 final size:99
Alignment explanation
Indices: 47958031--47958333 Score: 369
Period size: 98 Copynumber: 3.0 Consensus size: 99
47958021 TATTTGTACC
* * *
47958031 TTGATAATGGGTGATATGTGTACTAGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTG
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC-GATAGACAA---G-G
* * *
47958096 ATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGA
61 ATATGAGAGCCAGTGTAAGACATGTTTGGGACATGCTGA
*
47958135 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC-ATCAGCCACA-G-TA
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCGAT-AGACA-AGGATA
47958197 TGAGAGCCAGTGTAAGACATGTTTGGGACATGCTGA
64 TGAGAGCCAGTGTAAGACATGTTTGGGACATGCTGA
* *
47958233 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTG
1 TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC-GATAGACAA---G-G
* * *
47958298 ATATGTGTGCTAGTGTAAGACATGTTTGGGACATGC
61 ATATGAGAGCCAGTGTAAGACATGTTTGGGACATGC
47958334 ATCAGCCACA
Statistics
Matches: 176, Mismatches: 13, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
98 85 0.48
99 3 0.02
100 2 0.01
102 2 0.01
103 3 0.02
104 81 0.46
ACGTcount: A:0.26, C:0.10, G:0.32, T:0.33
Consensus pattern (99 bp):
TTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCGATAGACAAGGATATG
AGAGCCAGTGTAAGACATGTTTGGGACATGCTGA
Found at i:47958326 original size:150 final size:150
Alignment explanation
Indices: 47958055--47958379 Score: 650
Period size: 150 Copynumber: 2.2 Consensus size: 150
47958045 TATGTGTACT
47958055 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
1 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
47958120 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
66 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
47958185 TCAGCCACAGTATGAGAGCC
131 TCAGCCACAGTATGAGAGCC
47958205 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
1 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
47958270 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
66 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
47958335 TCAGCCACAGTATGAGAGCC
131 TCAGCCACAGTATGAGAGCC
47958355 AGTGTAAGACATGTTTGGGACATGC
1 AGTGTAAGACATGTTTGGGACATGC
47958380 ATTAGCCTCG
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 175 1.00
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.30
Consensus pattern (150 bp):
AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
TCAGCCACAGTATGAGAGCC
Found at i:47958422 original size:48 final size:46
Alignment explanation
Indices: 47958159--47958430 Score: 194
Period size: 52 Copynumber: 5.6 Consensus size: 46
47958149 TATGTGTGCT
47958159 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
* ** * * *
47958205 AGTGTAAGACATGTTTGGGACATGCTGAT-TGATA-ATGGGTGATATGTGTGCT
1 AGTGTAAGACATGTTTGGGACATGC--ATCAGCCACA-----G-TATGAGAGCC
* ** * * *
47958257 AGTGTAAGACATGTTTGGGACATGCTGAT-TGATA-ATGGGTGATATGTGTGCT
1 AGTGTAAGACATGTTTGGGACATGC--ATCAGCCACA-----G-TATGAGAGCC
47958309 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
* * *
47958355 AGTGTAAGACATGTTTGGGACATGCATTAGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCAC-AG-TA-TGAGAGCC
*
47958403 AGTGTAATACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTTTGGGACATGCATC
47958431 GACATTGAGA
Statistics
Matches: 196, Mismatches: 17, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
46 65 0.33
47 5 0.03
48 34 0.17
49 2 0.01
50 2 0.01
51 3 0.02
52 85 0.43
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCC
Found at i:47958438 original size:150 final size:149
Alignment explanation
Indices: 47958055--47958427 Score: 563
Period size: 150 Copynumber: 2.5 Consensus size: 149
47958045 TATGTGTACT
* * * ** *
47958055 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
1 AGTGTAAGACATGTTTGGGACATGC-GATTGAGAATGCGAGATATGTAAGCCAGTGTAAGACATG
47958120 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
65 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
47958185 TCAGCCACAGTATGAGAGCC
130 TCAGCCACAGTATGAGAGCC
* * * ** *
47958205 AGTGTAAGACATGTTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATG
1 AGTGTAAGACATGTTTGGGACATGC-GATTGAGAATGCGAGATATGTAAGCCAGTGTAAGACATG
47958270 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
65 TTTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCA
47958335 TCAGCCACAGTATGAGAGCC
130 TCAGCCACAGTATGAGAGCC
** * *
47958355 AGTGTAAGACATGTTTGGGACATGC-ATT-AGCCT-CGAGATATTTAAGCCAGTGTAATACATGT
1 AGTGTAAGACATGTTTGGGACATGCGATTGAGAATGCGAGATATGTAAGCCAGTGTAAGACATGT
47958417 TTGGGACATGC
66 TTGGGACATGC
47958428 ATCGACATTG
Statistics
Matches: 213, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
146 33 0.15
147 2 0.01
148 3 0.01
150 175 0.82
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (149 bp):
AGTGTAAGACATGTTTGGGACATGCGATTGAGAATGCGAGATATGTAAGCCAGTGTAAGACATGT
TTGGGACATGCTGATTGATAATGGGTGATATGTGTGCTAGTGTAAGACATGTTTGGGACATGCAT
CAGCCACAGTATGAGAGCC
Found at i:47958482 original size:94 final size:94
Alignment explanation
Indices: 47958309--47958520 Score: 239
Period size: 94 Copynumber: 2.3 Consensus size: 94
47958299 TATGTGTGCT
* * *
47958309 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAGTATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGACACAGTACGAGAGCCAGTGTAAGACATGTCTGGG
* * **
47958374 ACATGCATTAGCCTCGAGATATTTAAGCC
66 ACATGAATCAGCCTCGAGATATACAAGCC
* * *
47958403 AGTGTAATACATGTTTGGGACATGCATC-GACATTGAG-ACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTTTGGGACATGCATCAGACA--CAGTACGAGAGCCAGTGTAAGACATGTCTG
* * * *
47958466 GGGCATGAATCGGCCTCGCGATATACAAGCT
64 GGACATGAATCAGCCTCGAGATATACAAGCC
* * *
47958497 AGTGTAAGACCTATCTGGGACATG
1 AGTGTAAGACATGTTTGGGACATG
47958521 GCGTCAGGTT
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 3 0.03
94 93 0.95
95 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGACACAGTACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGAATCAGCCTCGAGATATACAAGCC
Found at i:47962270 original size:37 final size:37
Alignment explanation
Indices: 47962209--47962287 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
47962199 TTATTACGAA
* * *
47962209 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
47962246 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
47962283 GTCTT
1 GTCTT
47962288 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:47962484 original size:47 final size:47
Alignment explanation
Indices: 47962406--47962710 Score: 484
Period size: 47 Copynumber: 6.5 Consensus size: 47
47962396 CCCTTCGGGA
* * * * * * *
47962406 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47962453 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
47962500 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47962547 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47962594 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
47962641 CTTATAACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
47962688 CTTATCACACATATACACTTTCA
1 CTTATCACATATATACACTTTCA
47962711 GGCCTTATCA
Statistics
Matches: 240, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 240 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47962714 original size:26 final size:26
Alignment explanation
Indices: 47962684--47962736 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47962674 ATCGGCCATT
47962684 AGGCCTTATCACACATATACACTTTC
1 AGGCCTTATCACACATATACACTTTC
*
47962710 AGGCCTTATCACATATATACACTTTC
1 AGGCCTTATCACACATATACACTTTC
47962736 A
1 A
47962737 CATTCATCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (26 bp):
AGGCCTTATCACACATATACACTTTC
Found at i:47962726 original size:120 final size:121
Alignment explanation
Indices: 47962590--47962832 Score: 434
Period size: 120 Copynumber: 2.0 Consensus size: 121
47962580 ATCGGCCATT
*
47962590 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATAACACATAT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACACATAT
47962655 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ACATATACACTTTC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATATACACTTTC
* *
47962710 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACACATAT
*
47962775 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ACATATACACTTTC
47962832 A
1 A
47962833 CATTCATCAC
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
120 103 0.88
122 14 0.12
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (121 bp):
AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAACACATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATATACACTTTC
Found at i:47962728 original size:73 final size:73
Alignment explanation
Indices: 47962637--47962783 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
47962627 ATCGGCTATT
47962637 AGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATAT
1 AGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATAT
47962702 ACACTTTC
66 ACACTTTC
* * *
47962710 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATAT
47962775 ACACTTTC
66 ACACTTTC
47962783 A
1 A
47962784 CATTCATCAC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.31
Consensus pattern (73 bp):
AGGCCTTATAACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATAT
ACACTTTC
Found at i:47962738 original size:167 final size:169
Alignment explanation
Indices: 47962543--47962875 Score: 607
Period size: 167 Copynumber: 2.0 Consensus size: 169
47962533 ATCGGCCATT
*
47962543 AGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
47962608 ACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT-A-ACACATATACACTTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACACATATACACTTTCACATTCAT
47962671 CACATCGGCCATTAGGCCTTATCACACATATACACTTTC
131 CACATCGGCCATTAGGCCTTATCACACATATACACTTTC
47962710 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
* *
47962775 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACACATATACACTTTCACATTCAT
*
47962840 CACATCGGCCATTAGGCCTTATCACATATATACACT
131 CACATCGGCCATTAGGCCTTATCACACATATACACT
47962876 GTCTTGGCTG
Statistics
Matches: 159, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
167 101 0.64
168 1 0.01
169 57 0.36
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (169 bp):
AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACACATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTC
Found at i:47962841 original size:49 final size:47
Alignment explanation
Indices: 47962710--47962875 Score: 314
Period size: 47 Copynumber: 3.5 Consensus size: 47
47962700 ATACACTTTC
47962710 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
47962757 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
47962804 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT
47962853 AGGCCTTATCACATATATACACT
1 AGGCCTTATCACATATATACACT
47962876 GTCTTGGCTG
Statistics
Matches: 117, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
47 70 0.60
49 47 0.40
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
Found at i:47966507 original size:80 final size:80
Alignment explanation
Indices: 47966413--47966682 Score: 323
Period size: 80 Copynumber: 3.4 Consensus size: 80
47966403 ACACGCCACC
* * *
47966413 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
47966478 CCCGGATACATCACT
66 CCCGGATACATCACT
* * *
47966493 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
*
47966558 CCCGGATACATCGCT
66 CCCGGATACATCACT
* * * * *
47966573 AGCATGAATGCTCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTA
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTA
* * **
47966636 GTCTGGATATGGTCACTT
65 GCCCGGATA-CATCAC-T
* *
47966654 AGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGA
47966683 CATCATTCGA
Statistics
Matches: 164, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
79 37 0.23
80 122 0.74
81 5 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
CCCGGATACATCACT
Found at i:47966623 original size:40 final size:40
Alignment explanation
Indices: 47966413--47966603 Score: 312
Period size: 40 Copynumber: 4.8 Consensus size: 40
47966403 ACACGCCACC
* * * *
47966413 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
* *
47966453 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
47966493 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
47966533 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
47966573 AGCATGAATGCTCTTC-GGACTTAGCCCGGAT
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGAT
47966604 TTAGTAACTC
Statistics
Matches: 142, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 15 0.11
40 127 0.89
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
Found at i:47966652 original size:120 final size:121
Alignment explanation
Indices: 47966413--47966682 Score: 309
Period size: 120 Copynumber: 2.3 Consensus size: 121
47966403 ACACGCCACC
* * * *
47966413 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
* **
47966478 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCAC-T
66 CCCGGATACATAACTAGCACCAATGCTCTTCGGGACTTAGCCCGGATACATCACTT
* *
47966533 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGG-ACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
** * * * **
47966597 CCCGGATTTAGTAACTCGCACCAATGC-CTTC-GGATCTTAGTCTGGATATGGTCACTT
66 CCCGGATACA-TAACTAGCACCAATGCTCTTCGGGA-CTTAGCCCGGATA-CATCACTT
* *
47966654 AGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 AGCATGAATGCTCTTCGGGACTTAGCCCGGA
47966683 CATCATTCGA
Statistics
Matches: 128, Mismatches: 18, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
118 3 0.02
119 48 0.38
120 72 0.56
121 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (121 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
CCCGGATACATAACTAGCACCAATGCTCTTCGGGACTTAGCCCGGATACATCACTT
Found at i:47967029 original size:29 final size:29
Alignment explanation
Indices: 47966990--47967068 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
47966980 CTTAATAATC
*
47966990 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
47967020 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
47967049 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
47967069 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:47967111 original size:43 final size:43
Alignment explanation
Indices: 47967050--47967152 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
47967040 TGCATTTCAA
47967050 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
47967093 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
47967136 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
47967153 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:47969069 original size:37 final size:37
Alignment explanation
Indices: 47969019--47969097 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
47969009 TTATTACAAA
* *
47969019 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
* *
47969056 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
47969093 GTCTT
1 GTCTT
47969098 TAGAACTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:47969294 original size:47 final size:47
Alignment explanation
Indices: 47969218--47969426 Score: 285
Period size: 47 Copynumber: 4.4 Consensus size: 47
47969208 CTTCGAGACT
* * * * * * *
47969218 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
47969265 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
47969312 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
47969358 TCATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
47969406 TATCACACATATACACTTTCA
1 TATCACATATATACACTTTCA
47969427 GGCCTTATCA
Statistics
Matches: 145, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
46 2 0.01
47 141 0.97
48 2 0.01
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:47969430 original size:26 final size:26
Alignment explanation
Indices: 47969400--47969452 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47969390 ATCGGCCATT
47969400 AGGCCTTATCACACATATACACTTTC
1 AGGCCTTATCACACATATACACTTTC
*
47969426 AGGCCTTATCACATATATACACTTTC
1 AGGCCTTATCACACATATACACTTTC
47969452 A
1 A
47969453 CATTCATCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (26 bp):
AGGCCTTATCACACATATACACTTTC
Found at i:47969437 original size:73 final size:74
Alignment explanation
Indices: 47969353--47969501 Score: 255
Period size: 73 Copynumber: 2.0 Consensus size: 74
47969343 ATCGGCTATT
47969353 AGGCCTCATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ACATA
1 AGGCCTCATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATA
47969417 TACACTTTC
66 TACACTTTC
* * *
47969426 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTCATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ACAT
47969491 ATACACTTTC
65 ATACACTTTC
47969501 A
1 A
47969502 CATTCATCAC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 57 0.80
75 14 0.20
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (74 bp):
AGGCCTCATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAACATA
TACACTTTC
Found at i:47969442 original size:120 final size:121
Alignment explanation
Indices: 47969306--47969541 Score: 420
Period size: 120 Copynumber: 2.0 Consensus size: 121
47969296 ATCGGCCATT
*
47969306 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTCATCAC-ACATA
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACAACATA
47969370 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
66 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
* *
47969426 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACA-ACAT
*
47969491 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
65 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAC
47969542 GCTGTCTTGG
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
120 57 0.52
122 53 0.48
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (121 bp):
AGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACAACATA
TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
Found at i:47969495 original size:49 final size:49
Alignment explanation
Indices: 47969426--47969540 Score: 216
Period size: 49 Copynumber: 2.4 Consensus size: 49
47969416 ATACACTTTC
47969426 AGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
47969473 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
1 AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
47969522 AGGCCTTATCACATATATA
1 AGGCCTTATCACATATATA
47969541 CGCTGTCTTG
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
47 12 0.18
49 54 0.82
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (49 bp):
AGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
Found at i:47976733 original size:48 final size:46
Alignment explanation
Indices: 47976611--47976816 Score: 141
Period size: 46 Copynumber: 4.4 Consensus size: 46
47976601 TGTGTGCTAT
* ** * *
47976611 TGTAAGACATGTCTGGGACATGCATCAACCAC-AGCATGA-GAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAG-AT-ATAAGCCAG
* * * *
47976657 TGTAAGACATGTCTGGGATATACCTCGGCCTCGAGATATTTAAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATA--TAAGCCAG
* * * * * *
47976705 TGTAAGACATGTTTAGGACATGCATCGGCATTGAGACGA-GAGCTAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGA-TATAAGCCAG
* *
47976751 TGTAAGACATGTTTGGGACATGCATTGGCCTC-ACGATATACAAGCTAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GATAT--AAGCCAG
* *
47976799 TGTAAGACCTGTCTGGGA
1 TGTAAGACATGTTTGGGA
47976817 TATGGCGTCA
Statistics
Matches: 126, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 63 0.50
47 2 0.02
48 57 0.45
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATAAGCCAG
Found at i:47979749 original size:79 final size:81
Alignment explanation
Indices: 47979616--47979797 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
47979606 AATGATGTCT
* *
47979616 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
* *
47979680 GCGGGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
47979696 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
*
47979758 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
47979775 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
47979798 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
GCGAGATACTATAACC
Found at i:47979804 original size:40 final size:40
Alignment explanation
Indices: 47979616--47979797 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
47979606 AATGATGTCT
* * * *
47979616 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * * *
47979656 GGACTAAGAT-CCGAAGGCATTTGTGCGGGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
47979696 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
47979735 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
47979775 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
47979798 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:47979819 original size:79 final size:79
Alignment explanation
Indices: 47979666--47979830 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
47979656 GGACTAAGAT
* * * **
47979666 CCGAAGGCATTTGTGCGGGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47979731 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47979745 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47979808 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47979824 CCGAAGG
1 CCGAAGG
47979831 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47987797 original size:79 final size:81
Alignment explanation
Indices: 47987665--47987845 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
47987655 ATGATGTCCA
* *
47987665 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
47987729 CGAGATACTA-ATTCCG
66 CGAGATACTATA-ACCG
* * * **
47987745 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTGT
*
47987807 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCG
*
47987824 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
47987846 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 57 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTATAACCG
Found at i:47987859 original size:40 final size:40
Alignment explanation
Indices: 47987665--47987845 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
47987655 ATGATGTCCA
* * * *
47987665 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCG
* * *
47987705 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCG
47987745 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
* *
47987784 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
*
47987824 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
47987846 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
Found at i:47987867 original size:79 final size:79
Alignment explanation
Indices: 47987714--47987878 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47987704 GGACTAAGAT
* * **
47987714 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47987779 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47987793 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47987856 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47987872 CCGAAGG
1 CCGAAGG
47987879 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48008053 original size:21 final size:22
Alignment explanation
Indices: 48008020--48008060 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
48008010 TTCATTTATG
*
48008020 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
48008041 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
48008061 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:48008500 original size:28 final size:28
Alignment explanation
Indices: 48008467--48008548 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
48008457 TTTGAATCAT
*
48008467 TCAATATTTCGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
*
48008495 TCAATATCTCGCACACTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
48008523 TCAATATTTCGTACACTGAGTGCCAT
1 TCAATATTTCGCACACTAAGTGCCAT
48008549 ATTTGATTGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:48010869 original size:29 final size:29
Alignment explanation
Indices: 48010835--48010905 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
48010825 TCAACCACGT
* *
48010835 ACACTTAGTGCCATGTACTTT-AAACTCGC
1 ACACTTAGTGCCATGCA-TTTCAAACCCGC
*
48010864 ACACTTAGTGCCATGCATTTCAAGCCCGC
1 ACACTTAGTGCCATGCATTTCAAACCCGC
48010893 ACACTTAGTGCCA
1 ACACTTAGTGCCA
48010906 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
ACACTTAGTGCCATGCATTTCAAACCCGC
Found at i:48018869 original size:39 final size:39
Alignment explanation
Indices: 48018815--48018897 Score: 166
Period size: 39 Copynumber: 2.1 Consensus size: 39
48018805 CCATGAACTC
48018815 AAGGTACTTACCCTTTCCGCTGTCCGAAATCGACTCGGT
1 AAGGTACTTACCCTTTCCGCTGTCCGAAATCGACTCGGT
48018854 AAGGTACTTACCCTTTCCGCTGTCCGAAATCGACTCGGT
1 AAGGTACTTACCCTTTCCGCTGTCCGAAATCGACTCGGT
48018893 AAGGT
1 AAGGT
48018898 CGCAACCTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (39 bp):
AAGGTACTTACCCTTTCCGCTGTCCGAAATCGACTCGGT
Found at i:48019005 original size:29 final size:29
Alignment explanation
Indices: 48018966--48019044 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
48018956 CTTAATAATC
*
48018966 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
48018996 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
48019025 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
48019045 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:48020483 original size:27 final size:26
Alignment explanation
Indices: 48020452--48020629 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
48020442 TAAATTGTAC
48020452 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
48020479 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
48020505 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
48020533 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
48020561 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
48020588 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
48020615 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48020630 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:48020568 original size:82 final size:81
Alignment explanation
Indices: 48020453--48020608 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48020443 AAATTGTACA
*
48020453 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
48020517 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
48020534 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
48020599 TGCGAGTTGA
65 TGCGAATTGA
48020609 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48020620 original size:82 final size:81
Alignment explanation
Indices: 48020449--48020629 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48020439 GATTAAATTG
*
48020449 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
48020514 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
48020530 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
48020594 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48020612 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48020630 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48027690 original size:27 final size:26
Alignment explanation
Indices: 48027659--48027836 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
48027649 TAAATTGTAC
48027659 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
48027686 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
48027712 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
48027740 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
48027768 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
48027795 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
48027822 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48027837 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:48027775 original size:82 final size:81
Alignment explanation
Indices: 48027660--48027815 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48027650 AAATTGTACA
*
48027660 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
48027724 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
48027741 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
48027806 TGCGAGTTGA
65 TGCGAATTGA
48027816 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48027827 original size:82 final size:81
Alignment explanation
Indices: 48027656--48027836 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48027646 GATTAAATTG
*
48027656 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
48027721 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
48027737 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
48027801 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48027819 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48027837 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48039314 original size:21 final size:19
Alignment explanation
Indices: 48039282--48039321 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
48039272 GTGATGAACA
48039282 TGAATGAATGGTATTTTAT
1 TGAATGAATGGTATTTTAT
48039301 TGAATTGATATGGTATTTTAT
1 TGAA-TGA-ATGGTATTTTAT
48039322 ATTTGATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (19 bp):
TGAATGAATGGTATTTTAT
Found at i:48041062 original size:29 final size:27
Alignment explanation
Indices: 48041030--48041097 Score: 68
Period size: 29 Copynumber: 2.5 Consensus size: 27
48041020 TGGGGCCTAG
48041030 TTCATATTCT-TATGGCCCACTAGGCCCAA
1 TTCATATT-TATATGG-CCACTAGG-CCAA
* *
48041059 TTCACATTTATATGGCCATTAGGCCAA
1 TTCATATTTATATGGCCACTAGGCCAA
*
48041086 ATCATA-TTATAT
1 TTCATATTTATAT
48041098 TCATGCTCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.18
27 8 0.24
28 8 0.24
29 12 0.35
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (27 bp):
TTCATATTTATATGGCCACTAGGCCAA
Found at i:48041209 original size:19 final size:19
Alignment explanation
Indices: 48041173--48041209 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
48041163 ACAGCCATCA
*
48041173 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
48041192 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
48041210 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:48062183 original size:40 final size:40
Alignment explanation
Indices: 48062128--48062460 Score: 379
Period size: 39 Copynumber: 8.4 Consensus size: 40
48062118 ATATTTGATG
* *
48062128 TGTATCCGGGCTTAAAGACCTGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAAT
48062168 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
* ** *
48062208 TGTATCCGGACTT-AAGGTCCGTAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
48062247 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
* ** *
48062287 TGTATCCGGACTT-AAGGTCCGTAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
48062326 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
** * * * * *
48062366 TGTATCTAGACTT-AAGATCCGCAGGCTTCGTACTGGTAC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
* * ** * * * *
48062405 TATATCCGGACTT-AAGGTCTGCAGGCTTCGTACTGGTAC
1 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
* *
48062444 TATATCCGAGCTTAAAG
1 TGTATCCGGGCTTAAAG
48062461 TCTCGTAGGC
Statistics
Matches: 257, Mismatches: 32, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
39 138 0.54
40 119 0.46
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (40 bp):
TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
Found at i:48062260 original size:79 final size:79
Alignment explanation
Indices: 48062159--48062472 Score: 443
Period size: 79 Copynumber: 4.0 Consensus size: 79
48062149 GCAGGCTATA
48062159 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
1 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
48062224 GTCCGTAGGCTTCG
66 GTCCGTAGGCTTCG
48062238 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
1 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
48062303 GTCCGTAGGCTTCG
66 GTCCGTAGGCTTCG
**
48062317 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCTAGACTTAAG
1 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
* *
48062382 ATCCGCAGGCTTCG
66 GTCCGTAGGCTTCG
* * * * * ** * * * * *
48062396 TACTGGTACTATATCCGGACTT-AAGGTCTGCAGGCTTCGTACTGGTACTATATCC-GAGCTTAA
1 TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGA-CTTAA
*
48062459 AGTCTCGTAGGCTT
65 GGTC-CGTAGGCTT
48062473 TGTGTTGGTG
Statistics
Matches: 213, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
77 2 0.01
78 32 0.15
79 179 0.84
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (79 bp):
TGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAG
GTCCGTAGGCTTCG
Found at i:48062471 original size:118 final size:117
Alignment explanation
Indices: 48062128--48062472 Score: 370
Period size: 118 Copynumber: 2.9 Consensus size: 117
48062118 ATATTTGATG
* * * * * * * * **
48062128 TGTATCCGGGCTTAAAGACCTGCAGGCTAT-ATGCTGGAATTGTATCCGGGCTTAAAGACCCGCA
1 TGTATCCAGACTTAAAGACCCGCAGGCT-TCGTACTGGAACTATATCCGGACTT-AAGGTCCGCA
*
48062192 GGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGTAGGCTTCGTGCTGGAAT
64 GGCTTCGTGCTGGAATTGTATCCGG-CTTAAAGTCCGTAGGCTTCGTGCTGGAAT
* * * * * *
48062247 TGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGTAGG
1 TGTATCCAGACTTAAAGACCCGCAGGCTTCGTACTGGAACTATATCCGGACTTAAGGTCCGCAGG
* *
48062312 CTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT
66 CTTCGTGCTGGAATTGTATCC-GGCTTAAAG-TCCGTAGGCTTCGTGCTGGAAT
* * * *
48062366 TGTATCTAGACTT-AAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCTGCAGG
1 TGTATCCAGACTTAAAGACCCGCAGGCTTCGTACTGGAACTATATCCGGACTTAAGGTCCGCAGG
* * * *
48062430 CTTCGTACTGGTACTATATCCGAGCTTAAAGTCTCGTAGGCTT
66 CTTCGTGCTGGAATTGTATCCG-GCTTAAAGTC-CGTAGGCTT
48062473 TGTGTTGGTG
Statistics
Matches: 196, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
117 2 0.01
118 114 0.58
119 80 0.41
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.29
Consensus pattern (117 bp):
TGTATCCAGACTTAAAGACCCGCAGGCTTCGTACTGGAACTATATCCGGACTTAAGGTCCGCAGG
CTTCGTGCTGGAATTGTATCCGGCTTAAAGTCCGTAGGCTTCGTGCTGGAAT
Found at i:48083913 original size:44 final size:44
Alignment explanation
Indices: 48083832--48084269 Score: 241
Period size: 44 Copynumber: 9.9 Consensus size: 44
48083822 GACACCATAT
* * ** *
48083832 TATCTTCGATCTACTCTTTGACAATACAGAGACGCCAAATCTGC
1 TATCCTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTGC
* * * *
48083876 TATCCTCAATCTGCTCCCTGACAATACAGGGTTGCCAAATATG-
1 TATCCTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTGC
* * * * * * ** *
48083919 TTTCTTGGATTTGCT-CCTCGTCGAATACAAAGATGTGAAATCTAC
1 TATCCTCGATCTGCTCCCT-GAC-AATACAGAGATGCCAAATCTGC
* * * *
48083964 TAT-CTCTGATTTACTCTCTGACCATACAGAGATGCCAAATCTGC
1 TATCCTC-GATCTGCTCCCTGACAATACAGAGATGCCAAATCTGC
* * *
48084008 TAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTAC
1 TATCCTCGATCTGCTCCCTGAC-AATACAGAGATGCCAAATCTGC
* * * *
48084053 AATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAA--T-C
1 TATCCTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTGC
* * * * * * *
48084094 -ATCTTAGATTTGCTTCAGC-G-TAA-ACACGTGAAAGCCAAATCTGC
1 TATCCTCGATCTGC-TC-CCTGACAATACA-GAG-ATGCCAAATCTGC
* * *
48084138 TATGTCTTCGATCTGTTCCCTGACAATACAG-GGTCGCCAAATCTGC
1 TA--TCCTCGATCTGCTCCCTGACAATACAGAGAT-GCCAAATCTGC
* * * * *
48084184 TATCTTCGATCTGCTCTCTGGCAAATACAGAGACGCCAAATCTAC
1 TATCCTCGATCTGCTCCCTGAC-AATACAGAGATGCCAAATCTGC
* * * * **
48084229 TATCTTTGATCTACTCTCTGACAATACAGAGACACCAAATC
1 TATCCTCGATCTGCTCCCTGACAATACAGAGATGCCAAATC
48084270 ATCTTAGATT
Statistics
Matches: 302, Mismatches: 69, Indels: 46
0.72 0.17 0.11
Matches are distributed among these distances:
39 3 0.01
40 15 0.05
41 11 0.04
42 5 0.02
43 13 0.04
44 132 0.44
45 88 0.29
46 20 0.07
47 12 0.04
48 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
TATCCTCGATCTGCTCCCTGACAATACAGAGATGCCAAATCTGC
Found at i:48084168 original size:87 final size:85
Alignment explanation
Indices: 48084042--48084361 Score: 308
Period size: 87 Copynumber: 3.7 Consensus size: 85
48084032 ATACAGAGAC
* * *
48084042 GCCAAATCTAC-AATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTG
1 GCCAAATCTGCTAGTCTTTGATCTGCTCCCTGACAATACAG-GATGCCAAATCATCTTAGATTTG
48084106 CTTCAGCGTAAACACGTGAAA
65 CTTCAGCGTAAACACGTGAAA
* * * *
48084127 GCCAAATCTGCTATGTCTTCGATCTGTTCCCTGACAATACAGGGTCGCCAAATCTGCTATCTTCG
1 GCCAAATCTGCTA-GTCTTTGATCTGCTCCCTGACAATACAGGAT-GCCAAA--T-C-ATCTTAG
* * * * * *
48084192 ATCTGCTCTCTG-GCAAATAC-AGAGAC
60 ATTTGCT-TCAGCGTAAACACGTGA-AA
* * * **
48084218 GCCAAATCTACTA-TCTTTGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTG
1 GCCAAATCTGCTAGTCTTTGATCTGCTCCCTGACAATACAG-GATGCCAAATCATCTTAGATTTG
48084282 CTTCAGCGTAAACACGTGAAA
65 CTTCAGCGTAAACACGTGAAA
* *
48084303 GCCAAATCTGCTACGTCTTTGATCTGCTCCTTGTAAACATA-AGGATGCCAAATCATCTT
1 GCCAAATCTGCTA-GTCTTTGATCTGCTCCCTG-ACA-ATACAGGATGCCAAATCATCTT
48084362 GGATCTACTT
Statistics
Matches: 184, Mismatches: 35, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
84 3 0.02
85 41 0.22
86 6 0.03
87 60 0.33
88 4 0.02
89 32 0.17
90 4 0.02
91 31 0.17
92 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (85 bp):
GCCAAATCTGCTAGTCTTTGATCTGCTCCCTGACAATACAGGATGCCAAATCATCTTAGATTTGC
TTCAGCGTAAACACGTGAAA
Found at i:48084227 original size:176 final size:176
Alignment explanation
Indices: 48083997--48084328 Score: 574
Period size: 176 Copynumber: 1.9 Consensus size: 176
48083987 ATACAGAGAT
48083997 GCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTACAATCTTTGA
1 GCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTACAATCTTTGA
* **
48084062 TCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
66 TCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
*
48084127 GCCAAATCTGCTATGTCTTCGATCTGTTCCCTGACAATACAGGGTC
131 GCCAAATCTGCTACGTCTTCGATCTGTTCCCTGACAATACAGGGTC
* * * * *
48084173 GCCAAATCTGCTATCTTCGATCTGCTCTCTGGCAAATACAGAGACGCCAAATCTACTATCTTTGA
1 GCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTACAATCTTTGA
48084238 TCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
66 TCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
*
48084303 GCCAAATCTGCTACGTCTTTGATCTG
131 GCCAAATCTGCTACGTCTTCGATCTG
48084329 CTCCTTGTAA
Statistics
Matches: 146, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
176 146 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (176 bp):
GCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTACAATCTTTGA
TCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAA
GCCAAATCTGCTACGTCTTCGATCTGTTCCCTGACAATACAGGGTC
Found at i:48084355 original size:176 final size:175
Alignment explanation
Indices: 48083987--48084356 Score: 571
Period size: 176 Copynumber: 2.1 Consensus size: 175
48083977 CTCTCTGACC
48083987 ATACAGAGATGCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTA
1 ATACAG-GATGCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTA
* **
48084052 CAATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAA
65 CAATCTTTGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAA
* * *
48084117 ACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGTTCCCTGACA
130 ACACGTGAAAGCCAAATCTGCTACGTCTTCGATCTGCTCCCTGAAA
* * * * *
48084163 ATACAGGGTCGCCAAATCTGCTATCTTCGATCTGCTCTCTGGCAAATACAGAGACGCCAAATCTA
1 ATACAGGAT-GCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTA
*
48084228 CTATCTTTGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAA
65 CAATCTTTGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAA
* *
48084293 ACACGTGAAAGCCAAATCTGCTACGTCTTTGATCTGCTCCTTGTAAA
130 ACACGTGAAAGCCAAATCTGCTACGTCTTCGATCTGCTCCCTG-AAA
48084340 CATA-AGGATGCCAAATC
1 -ATACAGGATGCCAAATC
48084357 ATCTTGGATC
Statistics
Matches: 176, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
175 2 0.01
176 165 0.94
177 6 0.03
178 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (175 bp):
ATACAGGATGCCAAATCTGCTAACCTCGATCTGCTCCCTGACAAATACAGAGACGCCAAATCTAC
AATCTTTGATCTACTCTCTGACAATACAGAGACACCAAATCATCTTAGATTTGCTTCAGCGTAAA
CACGTGAAAGCCAAATCTGCTACGTCTTCGATCTGCTCCCTGAAA
Found at i:48108735 original size:49 final size:49
Alignment explanation
Indices: 48108658--48108902 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
48108648 TAGCCGAAGC
* * *
48108658 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
48108707 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
48108757 CATCTGATACACGTAGTAGCCTGCACTTAGTAGTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
48108808 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
48108857 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
48108903 TCACAATAGC
Statistics
Matches: 163, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 45 0.28
51 36 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:48108845 original size:101 final size:98
Alignment explanation
Indices: 48108671--48108902 Score: 293
Period size: 100 Copynumber: 2.3 Consensus size: 98
48108661 CTGGTACGCA
* * * *
48108671 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* *
48108736 GTACTACACACGTGACCTCACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* * * *
48108770 TAGTAGCCTGCACTTAGTAGTACACACGTGATCGAAGTTTTCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** * *
48108835 TAGTACTACACATGCGACCAATTATCTGGTACGCG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
*
48108870 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
48108903 TCACAATAGC
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 29 0.26
100 43 0.38
101 41 0.36
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:48118663 original size:8 final size:8
Alignment explanation
Indices: 48118650--48118674 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
48118640 TTAGAGTAGG
48118650 CCCATGAT
1 CCCATGAT
48118658 CCCATGAT
1 CCCATGAT
48118666 CCCATGAT
1 CCCATGAT
48118674 C
1 C
48118675 TTTTCCCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.40, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCATGAT
Found at i:48126527 original size:39 final size:40
Alignment explanation
Indices: 48126427--48126611 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
48126417 TCGAATGATG
* * *
48126427 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
48126466 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
48126507 TCCAGGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48126546 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48126585 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48126612 GACTAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48126564 original size:79 final size:81
Alignment explanation
Indices: 48126431--48126609 Score: 224
Period size: 79 Copynumber: 2.2 Consensus size: 81
48126421 ATGATGTCCG
* *
48126431 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
*
48126495 CGAGTTACTA-ATTCCA
66 CGAGTTACTATA-ACCA
* * **
48126511 GGCTAAG-CCCGAAGGCATTGGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGT
*
48126573 GCGAGTTACTATAACCG
65 GCGAGTTACTATAACCA
*
48126590 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
48126610 TGGACTAGTA
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.69
80 26 0.30
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGTTACTATAACCA
Found at i:48126642 original size:79 final size:79
Alignment explanation
Indices: 48126428--48126644 Score: 214
Period size: 79 Copynumber: 2.7 Consensus size: 79
48126418 CGAATGATGT
* *
48126428 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGA-TCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCT-AGTAG-CTATATCCGGATTAA-ATTCCGAAGGCAT
*
48126490 TTGTGCGAGTTACTAATT
62 TTGTGCGAGTTACTAATA
* * * * * * *
48126508 CCAGGCTAAG-CCCGAAGGCATTGGTGCAAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-GCTAG-TAGCTATATCCGGATTAAATTCCGAAGGCATTT
48126571 GTGCGAGTTACT-ATAA
64 GTGCGAGTTACTAAT-A
*
48126587 CCGGGCTATGTCCCGAAGGCATTTGGACTAGTAGCTATATCC-GATTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGG-CTAGTAGCTATATCCGGATTAAATTCCGAAGG
48126645 TACGTGATTC
Statistics
Matches: 111, Mismatches: 18, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
78 2 0.02
79 70 0.63
80 39 0.35
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGGCTAGTAGCTATATCCGGATTAAATTCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:48128674 original size:19 final size:19
Alignment explanation
Indices: 48128659--48128695 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
48128649 GACACGGGTG
48128659 TGTCAAGGGCACACGGGCA
1 TGTCAAGGGCACACGGGCA
*
48128678 TGTCGAGGGCACACGGGC
1 TGTCAAGGGCACACGGGC
48128696 CTATCTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.27, G:0.41, T:0.11
Consensus pattern (19 bp):
TGTCAAGGGCACACGGGCA
Found at i:48137452 original size:27 final size:28
Alignment explanation
Indices: 48137420--48137607 Score: 217
Period size: 27 Copynumber: 6.9 Consensus size: 28
48137410 AAGTACTCCC
48137420 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
** *
48137448 G-TTTACAGAATTACTATTTTACCCAC-
1 GATTTACAGAATTACCGTTTTACCCTCA
*
48137474 GATTTACAGAATTACCGTTTTACTCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
** * * *
48137502 -ATTTGTAAAATTACCATTTTACCCT-T
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
48137528 GATTTACAGAATTACTGGTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
48137556 G-TTTACAAAATTATCGTTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCCTCA
48137582 GATTTACAGAATTACCGTTTTACCCT
1 GATTTACAGAATTACCGTTTTACCCT
48137608 TGATTGTGAA
Statistics
Matches: 129, Mismatches: 26, Indels: 11
0.78 0.16 0.07
Matches are distributed among these distances:
26 2 0.02
27 125 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (28 bp):
GATTTACAGAATTACCGTTTTACCCTCA
Found at i:48137460 original size:54 final size:54
Alignment explanation
Indices: 48137419--48137607 Score: 270
Period size: 54 Copynumber: 3.5 Consensus size: 54
48137409 AAAGTACTCC
* * *
48137419 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCT
* * **
48137473 CGATTTACAGAATTACCGTTTTACTCTCAATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCT
* * * * *
48137527 TGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCT
48137581 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
48137608 TGATTGTGAA
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACCATTTTACCCT
Found at i:48137647 original size:27 final size:27
Alignment explanation
Indices: 48137617--48137812 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
48137607 TTGATTGTGA
*
48137617 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
48137644 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** * *
48137671 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
48137698 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
48137725 AATTATCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
48137752 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * *
48137779 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
48137806 AATTACC
1 AATTACC
48137813 ATTTTGCCCC
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:48137685 original size:54 final size:54
Alignment explanation
Indices: 48137617--48137812 Score: 241
Period size: 54 Copynumber: 3.6 Consensus size: 54
48137607 TTGATTGTGA
* * * *
48137617 AATTACTGAAATACCCCTATAGGGTAGAATTTCCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
48137671 AATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * *
48137725 AATTA-TCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAG
1 AATTACT-AAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** * * * *
48137779 AATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTATAGGGTAGAATTACC
48137813 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 122 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:48138049 original size:27 final size:26
Alignment explanation
Indices: 48138011--48138093 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
48138001 CGGAGGAAGC
* *
48138011 GTTCTGATGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
48138038 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
48138064 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
48138091 GTT
1 GTT
48138094 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:48138213 original size:22 final size:22
Alignment explanation
Indices: 48138181--48138239 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
48138171 CCCGTTATTA
*
48138181 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
48138203 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
48138225 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
48138240 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:48138426 original size:27 final size:27
Alignment explanation
Indices: 48138404--48138477 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
48138394 TAGGTGGGTT
*
48138404 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
48138431 TGCCACAATATCTGTATCTGGTGACAC
1 TGCCACAATATCTGTATCTGGTGGCTC
*
48138458 TGTCACAATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
48138478 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:48138604 original size:6 final size:6
Alignment explanation
Indices: 48138595--48138757 Score: 142
Period size: 6 Copynumber: 26.8 Consensus size: 6
48138585 TTGCATTCAC
48138595 ATTCTG ATTCTG ATTCTG --TCATG TAATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTC-TG --ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
48138644 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
48138693 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
48138741 ATTCTG ATTCTA ATTCT
1 ATTCTG ATTCTG ATTCT
48138758 CATTTTGGTT
Statistics
Matches: 130, Mismatches: 11, Indels: 32
0.75 0.06 0.18
Matches are distributed among these distances:
4 2 0.02
5 10 0.08
6 106 0.82
7 6 0.05
8 4 0.03
9 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:48138690 original size:61 final size:60
Alignment explanation
Indices: 48138595--48138757 Score: 263
Period size: 61 Copynumber: 2.7 Consensus size: 60
48138585 TTGCATTCAC
*
48138595 ATTCTGATTCTGATTCTGTCATGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTCA-CTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
*
48138656 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCA-CTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
* * *
48138717 ATTCTGATTCTGATTCTGTTACTGATTCTGATTCTAATTCT
1 ATTCTGATTCTGATTCTGTCACTAATTCTGATTCTGATTCT
48138758 CATTTTGGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
60 18 0.19
61 78 0.81
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (60 bp):
ATTCTGATTCTGATTCTGTCACTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:48139656 original size:16 final size:16
Alignment explanation
Indices: 48139635--48139666 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
48139625 TGAGTAAGTG
48139635 GTAATCATGAGATTTA
1 GTAATCATGAGATTTA
48139651 GTAATCATGAGATTTA
1 GTAATCATGAGATTTA
48139667 ATGCAAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (16 bp):
GTAATCATGAGATTTA
Found at i:48141015 original size:27 final size:27
Alignment explanation
Indices: 48140985--48141117 Score: 95
Period size: 27 Copynumber: 4.9 Consensus size: 27
48140975 AATGCCCTCA
*
48140985 ATTTGTAAAATTACCAAAGTACCCCCG
1 ATTTGTAAAATTACCAAAATACCCCCG
* * **** **
48141012 ATTTATAGAATTACCGTTTTACCCTTG
1 ATTTGTAAAATTACCAAAATACCCCCG
* ** *
48141039 GTTTACAAAATTACCAAAATACCCTCG
1 ATTTGTAAAATTACCAAAATACCCCCG
* * * *
48141066 ATTAGGAAAATTACCAAAATAACCCTG
1 ATTTGTAAAATTACCAAAATACCCCCG
* *
48141093 GTTTGTAAAACTACCAAAATACCCC
1 ATTTGTAAAATTACCAAAATACCCC
48141118 TGTAGGGTAG
Statistics
Matches: 78, Mismatches: 28, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCCCG
Found at i:48141139 original size:27 final size:27
Alignment explanation
Indices: 48141104--48141430 Score: 431
Period size: 27 Copynumber: 12.1 Consensus size: 27
48141094 TTTGTAAAAC
*
48141104 TACCAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
48141131 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
48141158 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * * *
48141185 TATCGAAATACCCTTATAGGGTAGAAC
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
48141212 TACCGAAATACCCTTGTAGGTTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
48141239 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
48141266 TACCGAAATACCCCTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
48141293 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
48141320 TACTGAAATACCCTTGCAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* *
48141347 TACCGAAATACCTCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
48141374 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
48141401 TACCGAGATACCCTTGTGGGGTA-AAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
48141427 TACC
1 TACC
48141431 ATTTTGCCCC
Statistics
Matches: 267, Mismatches: 33, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 7 0.03
27 260 0.97
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:48141671 original size:25 final size:25
Alignment explanation
Indices: 48141633--48141702 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
48141623 AGGAAGTGCT
* *
48141633 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
48141658 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
48141683 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
48141703 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:48141715 original size:24 final size:24
Alignment explanation
Indices: 48141658--48141729 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
48141648 TAGTTTACCG
*
48141658 AAAAG-GGCTTTGCCCTAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
48141682 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
48141706 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
48141730 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:48144805 original size:27 final size:28
Alignment explanation
Indices: 48144721--48144818 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
48144711 CATGAGATTG
* * * *
48144721 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
48144750 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
48144778 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48144805 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
48144819 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48144829 original size:27 final size:27
Alignment explanation
Indices: 48144749--48144831 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
48144739 TAAATTGTAC
* *
48144749 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
48144777 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
48144804 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
48144831 A
1 A
48144832 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:48150262 original size:47 final size:47
Alignment explanation
Indices: 48150184--48150478 Score: 401
Period size: 47 Copynumber: 6.2 Consensus size: 47
48150174 CCCTTCGGGA
* * * * * **
48150184 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
48150231 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
48150278 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
48150325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
48150374 CTTATCGCACATATACACTTTCACATTCATCACATCAGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
48150421 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
48150470 CTTATCACA
1 CTTATCACA
48150479 ATTTAGAATT
Statistics
Matches: 218, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
47 132 0.61
49 86 0.39
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:48150379 original size:96 final size:96
Alignment explanation
Indices: 48150184--48150478 Score: 441
Period size: 96 Copynumber: 3.1 Consensus size: 96
48150174 CCCTTCGGGA
** * * * * ** * *
48150184 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
48150247 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
48150278 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
48150343 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
48150374 CTTATCGCACATATACACTTTCACATTCATCACATCAGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
48150439 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
48150470 CTTATCACA
1 CTTATCACA
48150479 ATTTAGAATT
Statistics
Matches: 181, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
94 44 0.24
96 137 0.76
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48165228 original size:24 final size:25
Alignment explanation
Indices: 48165201--48165301 Score: 75
Period size: 25 Copynumber: 4.1 Consensus size: 25
48165191 TCATTAGGGA
48165201 TTACCAATTGT-AGCTCATGA-GAGC
1 TTACCAATTGTCAGCTCAT-ACGAGC
* * *
48165225 TTACCGATTCTCAGATCATACGAGC
1 TTACCAATTGTCAGCTCATACGAGC
** * *
48165250 TTACTGATTG-CAGGTCGTGA-GAGC
1 TTACCAATTGTCAGCTCAT-ACGAGC
* *
48165274 TTACCAATTATCAGCTCATATGAGC
1 TTACCAATTGTCAGCTCATACGAGC
48165299 TTA
1 TTA
48165302 TCGATTTACA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
24 28 0.47
25 32 0.53
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
TTACCAATTGTCAGCTCATACGAGC
Found at i:48165313 original size:25 final size:25
Alignment explanation
Indices: 48165285--48165352 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
48165275 TACCAATTAT
* * *
48165285 CAGCTCATATGAGCTTATCGATTTA
1 CAGCTCATATGAGCATACCGATTCA
** **
48165310 CAGCTTGTAAAAGCATACCGATTCA
1 CAGCTCATATGAGCATACCGATTCA
48165335 CAGCTCATATGAGCATAC
1 CAGCTCATATGAGCATAC
48165353 ATGTACATGA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (25 bp):
CAGCTCATATGAGCATACCGATTCA
Found at i:48166222 original size:24 final size:24
Alignment explanation
Indices: 48166190--48166238 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
48166180 GATTGATATG
48166190 AATAAAGTTTATACAAGCTTACTA
1 AATAAAGTTTATACAAGCTTACTA
48166214 AATAAAGTTTATACAAGCTTACTA
1 AATAAAGTTTATACAAGCTTACTA
48166238 A
1 A
48166239 GCATTCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (24 bp):
AATAAAGTTTATACAAGCTTACTA
Found at i:48166506 original size:15 final size:16
Alignment explanation
Indices: 48166486--48166515 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48166476 TGGTGCCTTG
48166486 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
48166501 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
48166516 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:48167125 original size:116 final size:116
Alignment explanation
Indices: 48166921--48167155 Score: 452
Period size: 116 Copynumber: 2.0 Consensus size: 116
48166911 TATTATAAAT
*
48166921 GGTCTTTTGATATGTTTGAATGTGGTGAATTGGTATAATTGTTATAGTTGACATGAATGGCTATT
1 GGTCTTTTGATATGTTTGAATGTGGTGAATTGGTATAATTGTTATAGATGACATGAATGGCTATT
48166986 GGTGCTAGATGTAAAATGGCATATTTGGTACTTTTAGTGTGAAATTTGATA
66 GGTGCTAGATGTAAAATGGCATATTTGGTACTTTTAGTGTGAAATTTGATA
48167037 GGTCTTTTGATATGTTTGAATGTGGTGAATTGGTATAATTGTTATAGATGACATGAATGGCTATT
1 GGTCTTTTGATATGTTTGAATGTGGTGAATTGGTATAATTGTTATAGATGACATGAATGGCTATT
*
48167102 GGTGCTAGATGTAAAATGGCATATTTGGTACTTTTGGTGTGAAATTTGATA
66 GGTGCTAGATGTAAAATGGCATATTTGGTACTTTTAGTGTGAAATTTGATA
48167153 GGT
1 GGT
48167156 AAACAAAGTG
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.26, C:0.05, G:0.27, T:0.42
Consensus pattern (116 bp):
GGTCTTTTGATATGTTTGAATGTGGTGAATTGGTATAATTGTTATAGATGACATGAATGGCTATT
GGTGCTAGATGTAAAATGGCATATTTGGTACTTTTAGTGTGAAATTTGATA
Found at i:48169444 original size:34 final size:34
Alignment explanation
Indices: 48169401--48169470 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
48169391 TCTGAAGAGA
48169401 TAGTGTATGCCTAATGTGTAACACCCTTAACCCG
1 TAGTGTATGCCTAATGTGTAACACCCTTAACCCG
48169435 TAGTGTATGCCTAATGTGTAACACCCTTAACCCG
1 TAGTGTATGCCTAATGTGTAACACCCTTAACCCG
48169469 TA
1 TA
48169471 TCCGTCATTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (34 bp):
TAGTGTATGCCTAATGTGTAACACCCTTAACCCG
Found at i:48173043 original size:40 final size:40
Alignment explanation
Indices: 48172999--48173129 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
48172989 GGACTAAGAT
*
48172999 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTCAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
48173039 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
48173079 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
48173119 CCGAAGGCATT
1 CCGAAGGCATT
48173130 GTATGAGTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:48173150 original size:39 final size:38
Alignment explanation
Indices: 48172999--48173166 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 38
48172989 GGACTAAGAT
* * *
48172999 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTCAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
48173039 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
48173079 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACT-AAA-CCGGGTTAAGTC
** * *
48173119 CCGAAGGCATTGTATGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTA-AACCGGGTTAAGTC
48173158 CCGAAGGCA
1 CCGAAGGCA
48173167 CTTGAACGAG
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
39 31 0.28
40 77 0.71
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:48180950 original size:40 final size:40
Alignment explanation
Indices: 48180866--48181049 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
48180856 TTGAATGCTG
* * * *
48180866 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
48180905 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
48180946 TCCGGGTCAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
48180986 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
48181026 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
48181050 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:48183591 original size:43 final size:43
Alignment explanation
Indices: 48183532--48183690 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
48183522 CAGTGCCATA
* * * *
48183532 TCCTAGATATGATCTTACATGTTATCACATATCGATGCCACTG
1 TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * * * *
48183575 TCCTAGATAGGGTCTTACACGAAATCGA-TTAACGATGCCAATG
1 TCCTAGACATGGTCTTACATGTAATC-ACATATCGATGCCAATG
*
48183618 T-CTCAGACATGGTCTTACATGTAATCACAATAT-AATGCCAATG
1 TCCT-AGACATGGTCTTACATGTAATCAC-ATATCGATGCCAATG
*
48183661 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCTAGACATGGTCTTACATGTAATCACAT
48183691 CTCGGTAACC
Statistics
Matches: 95, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 5 0.05
43 86 0.91
44 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
TCCTAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:48187905 original size:23 final size:23
Alignment explanation
Indices: 48187878--48187923 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
48187868 AGATCAACAC
48187878 AAATAT-AATCACATACATATCAA
1 AAATATCAATCACAT-CATATCAA
* *
48187901 AAATATCATTCCCATCATATCAA
1 AAATATCAATCACATCATATCAA
48187924 TCATCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (23 bp):
AAATATCAATCACATCATATCAA
Found at i:48203470 original size:53 final size:53
Alignment explanation
Indices: 48203386--48203588 Score: 199
Period size: 53 Copynumber: 3.8 Consensus size: 53
48203376 TTCCTTTTTA
* * *
48203386 AACTTACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
48203439 AACTCACCAGTGCCATGCCTTGGCATTGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * * * *
48203493 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACTTGATTTCCTTGCCTTGAAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTT-ATG
* *
48203548 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
48203589 ACTTAAACCC
Statistics
Matches: 116, Mismatches: 31, Indels: 5
0.76 0.20 0.03
Matches are distributed among these distances:
53 44 0.38
54 34 0.29
55 37 0.32
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:48205945 original size:20 final size:20
Alignment explanation
Indices: 48205914--48205964 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
48205904 GGGATTGGAC
*
48205914 TTGGTGCTTTTGAT-TGCACAT
1 TTGGTGCCTTTG-TCTGCAC-T
48205935 TT-GTGCCTTTGTCTGCACT
1 TTGGTGCCTTTGTCTGCACT
48205954 TTGGTGCCTTT
1 TTGGTGCCTTT
48205965 ATTACGCATC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.15
20 21 0.78
21 2 0.07
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.49
Consensus pattern (20 bp):
TTGGTGCCTTTGTCTGCACT
Found at i:48213567 original size:66 final size:69
Alignment explanation
Indices: 48213437--48213567 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 69
48213427 GGGATGTATC
* * *
48213437 CCATGTAGACAAGAGAGCTACGGGAGAGGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTG
1 CCATGTAGACAAGAGAGCTAC--G-GAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
48213502 AAAGACA
63 AAAGACA
* * * *
48213509 CCATGTAGACAAGAGAGCTAC-GA-GATAAGT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTG
48213568 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
66 23 0.44
67 6 0.12
68 2 0.04
72 21 0.40
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGGAGGATAAATGTAGCTAGGTCACATGGGTGATACCAAGTGAAA
GACA
Found at i:48234573 original size:27 final size:27
Alignment explanation
Indices: 48234543--48234720 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
48234533 ATATTGAGCC
* *
48234543 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
48234570 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
48234597 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
48234625 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48234652 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
48234679 CGCACACTTAGTGCTACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
48234706 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48234721 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48234655 original size:55 final size:54
Alignment explanation
Indices: 48234543--48234720 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
48234533 ATATTGAGCC
* * * * *
48234543 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
48234597 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
48234652 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCTACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
48234706 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48234721 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:48243483 original size:104 final size:104
Alignment explanation
Indices: 48243303--48243526 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
48243293 TGTATATAAA
** * * *
48243303 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTACCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
48243368 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
48243407 AGGGGTTGCTAAGTGCTGATTACCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTACCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
48243471 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
48243511 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
48243527 GATATCCATT
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTACCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:48243578 original size:71 final size:72
Alignment explanation
Indices: 48243445--48243596 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
48243435 TCATTGGTGG
* *
48243445 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
48243510 GAGGGGT
66 GAGGGGT
***
48243517 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
48243581 GAGGGGT
66 GAGGGGT
48243588 TGCTAAGTG
1 TGCTAAGTG
48243597 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:48248318 original size:27 final size:27
Alignment explanation
Indices: 48248288--48248408 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
48248278 ATTACCAAAG
* * *
48248288 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
48248315 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
48248342 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTATAGAATTATC-GTTT
* *
48248369 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTATCGTTT
*
48248396 TACCCTTGATTTA
1 TACCCTCGATTTA
48248409 CAAAATTACT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.99
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTATCGTTT
Found at i:48248335 original size:54 final size:54
Alignment explanation
Indices: 48248261--48248389 Score: 134
Period size: 54 Copynumber: 2.4 Consensus size: 54
48248251 ATTATTGAAA
* * * * *
48248261 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACT-ATTT
**** * *
48248315 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
*
48248369 TACCCTTGATTTATAGAATTA
1 TACCCTCGATTTATAGAATTA
48248390 TTGTTTTACC
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
54 61 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCAAAGTACCCCCGATTTACAGAATTACTATTT
Found at i:48248427 original size:54 final size:54
Alignment explanation
Indices: 48248315--48248445 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
48248305 ATTATCGTTT
* * * ***
48248315 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
** *
48248369 TACCCTTGATTTATAGAATTATTGTTTTACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
* * *
48248423 TACCCTTGGTTTACAAAATTACC
1 TACCCTTGATTTATAGAATTACC
48248446 AAAATACCCT
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTAAAA
Found at i:48248661 original size:27 final size:27
Alignment explanation
Indices: 48248396--48248665 Score: 219
Period size: 27 Copynumber: 10.0 Consensus size: 27
48248386 ATTATTGTTT
* ** *
48248396 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
**
48248423 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
48248450 TACCC-TGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
48248476 TACCAC-TGGTTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTGTAAAATTACCAAAA
* *
48248503 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTGTAAAATTACCAAAA
** *
48248530 TACCCTTAATTTGTAAAATTACAAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
** **
48248557 TACCAC-TAATTTACAAAATTA-CATAAA
1 TACC-CTTGGTTTGTAAAATTACCA-AAA
* * *
48248584 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTGT-AAAATTACCA-AAA
* ** *
48248613 TACCATTGGTTTACAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACCAAAA
* *
48248640 TACCCTTGGTTTGTAGATTTACCAAA
1 TACCCTTGGTTTGTAAAATTACCAAA
48248666 GCACCCTTAT
Statistics
Matches: 205, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 26 0.13
27 152 0.74
28 9 0.04
29 18 0.09
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTGTAAAATTACCAAAA
Found at i:48248672 original size:137 final size:134
Alignment explanation
Indices: 48248410--48248674 Score: 299
Period size: 137 Copynumber: 2.0 Consensus size: 134
48248400 CTTGATTTAC
* ** * *
48248410 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTTTGTAAAATTACCAAA
1 AAAATTACAAAAATACCCTTAATTTACAAAATTACCAAAATACCCTGCTTTCTAAAATTACCAAA
** *
48248475 ATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAAT
66 ATACCACTGGTTTACAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAACACCCTTAAT
48248540 TTGT
131 TTGT
48248544 AAAATTACAAAAATACCAC-TAATTTACAAAATTA-CATAAATACCCTTGACTTTCTAAAAATTA
1 AAAATTACAAAAATACC-CTTAATTTACAAAATTACCA-AAATACCC-TG-CTTTCT-AAAATTA
* * * *
48248607 -TAGAAATACCATTGGTTTACAAAATTACTAAAATACC-CTTGGTTTGT-AGATTTACC-AAAGC
61 CCA-AAATACCACTGGTTTACAAAATTACCAAAATACCAC-TGGTTTGTGA-AATTACCGAAA-C
48248668 ACCCTTA
122 ACCCTTA
48248675 TAGGATGAAA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
133 2 0.02
134 37 0.34
135 3 0.03
136 10 0.09
137 58 0.53
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (134 bp):
AAAATTACAAAAATACCCTTAATTTACAAAATTACCAAAATACCCTGCTTTCTAAAATTACCAAA
ATACCACTGGTTTACAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAACACCCTTAAT
TTGT
Found at i:48248728 original size:27 final size:27
Alignment explanation
Indices: 48248696--48248747 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
48248686 GACTAAAATA
48248696 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
48248723 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
48248748 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:48249960 original size:25 final size:25
Alignment explanation
Indices: 48249928--48249975 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
48249918 TTATAACATG
*
48249928 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
48249953 AAAATGACTATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
48249976 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:48250078 original size:20 final size:20
Alignment explanation
Indices: 48250012--48250078 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
48250002 ATTTTGATAA
*
48250012 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
48250032 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
48250052 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
48250072 ACGTGAT
1 ACATGAT
48250079 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:48250158 original size:23 final size:23
Alignment explanation
Indices: 48250129--48250269 Score: 230
Period size: 23 Copynumber: 6.1 Consensus size: 23
48250119 AGGAAGTGAA
48250129 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
48250152 GAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
48250175 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
48250197 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
48250220 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
48250243 AAGAGGGCTTTTGCCCCAGTTGTT
1 AA-AGGGCTTATGCCCCAGTTATT
48250267 AAA
1 AAA
48250270 AGAGGCTAGG
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
22 22 0.20
23 67 0.61
24 21 0.19
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:48250202 original size:45 final size:46
Alignment explanation
Indices: 48250129--48250269 Score: 230
Period size: 45 Copynumber: 3.1 Consensus size: 46
48250119 AGGAAGTGAA
* *
48250129 AAAGGGCTTATGCCCCAGTTATTGAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
48250175 AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
* *
48250220 AAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTTTGCCCCAGTTGTT
1 AAAGGGCTTATGCCCCAGTTATTAA-AGGGCTTATGCCCCAGTTATT
48250267 AAA
1 AAA
48250270 AGAGGCTAGG
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
45 43 0.48
46 24 0.27
47 22 0.25
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:48250238 original size:68 final size:70
Alignment explanation
Indices: 48250129--48250269 Score: 232
Period size: 68 Copynumber: 2.0 Consensus size: 70
48250119 AGGAAGTGAA
* *
48250129 AAAGGGCTTATGCCCCAGTTATTGAAGGGCTTGTGCCCCAGTTATTAA-AGGGCTTATG-CCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
48250192 TTATT
66 TTATT
*
48250197 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTTTGCCCCAG
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
*
48250262 TTGTT
66 TTATT
48250267 AAA
1 AAA
48250270 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 46 0.69
69 9 0.13
70 12 0.18
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (70 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAGAGGGCTTATGCCCCAG
TTATT
Found at i:48250519 original size:31 final size:31
Alignment explanation
Indices: 48250484--48250547 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
48250474 CGTTTACAGT
*
48250484 AAAGGCTTCGGCCCAATAATATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAAAATGA
* **
48250515 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAATAATATGAAAAATGA
48250546 AA
1 AA
48250548 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAAAATGA
Found at i:48255031 original size:31 final size:31
Alignment explanation
Indices: 48254993--48255056 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
48254983 GTAGAACTCT
48254993 TAAATAAAAAGATTGACGGTTTATGTGGTTC
1 TAAATAAAAAGATTGACGGTTTATGTGGTTC
*
48255024 TAAATAAAAAGATTGACGGTTTGTGTGGTTC
1 TAAATAAAAAGATTGACGGTTTATGTGGTTC
48255055 TA
1 TA
48255057 CTCAGGTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36
Consensus pattern (31 bp):
TAAATAAAAAGATTGACGGTTTATGTGGTTC
Found at i:48271019 original size:93 final size:92
Alignment explanation
Indices: 48270890--48271060 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 92
48270880 CGCCCATAAG
* ***
48270890 CGAACTCGGACTCAACTCAATGAGCCTGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48270955 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTC-GATGCCTAGTTACATCTCA
*
48270983 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCCT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
48271047 AACGAGTTCGATGC
65 AACGAGTTCGATGC
48271061 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 6 0.08
93 66 0.92
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCCTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGATGCCTAGTTACATCTCA
Found at i:48271051 original size:46 final size:46
Alignment explanation
Indices: 48270883--48271056 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
48270873 TGTAACCCGC
* * ***
48270883 CCATAAGCGAACTCGGACTCAACTCAATGAG-CCTGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
48270929 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
48270979 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
48271022 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
48271057 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.55
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48274484 original size:93 final size:93
Alignment explanation
Indices: 48274371--48274541 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48274361 GCCCATAAGT
*
48274371 GAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48274435 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
48274464 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48274529 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48274542 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48274536 original size:46 final size:46
Alignment explanation
Indices: 48274363--48274538 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
48274353 TGTAACCCGC
* * *
48274363 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
48274409 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
48274459 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
48274502 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48274539 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 61 0.56
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48282015 original size:46 final size:46
Alignment explanation
Indices: 48281948--48282119 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
48281938 TGTAACCCGC
* * *
48281948 CCATAAGTGAACTCAGACTCAACTCAACGGGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
48281994 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACAT
* * * * * *
48282044 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
*
48282087 CCAGAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
48282120 TGGATGCTCA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 58 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
Found at i:48282069 original size:93 final size:93
Alignment explanation
Indices: 48281956--48282126 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
48281946 GCCCATAAGT
* * * *
48281956 GAACTCAGACTCAACTCAACGGGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCAGAAGTGAACTCGGACTCAACTCAA
48282021 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
48282049 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAGAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCAGAAGTGAACTCGGACTCAACTCAA
*
48282114 CGAGTTTGGATGC
66 CGAGTTCGGATGC
48282127 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCAGAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48282142 original size:46 final size:44
Alignment explanation
Indices: 48281999--48282142 Score: 114
Period size: 46 Copynumber: 3.1 Consensus size: 44
48281989 CACATCCATA
*
48281999 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * **
48282046 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-GA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
48282092 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
48282138 AGTGA
1 AGTGA
48282143 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 8 0.10
45 1 0.01
46 32 0.42
47 30 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:48282580 original size:30 final size:30
Alignment explanation
Indices: 48282546--48282605 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
48282536 ATTTAATACG
*
48282546 AACTTTAATAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
48282576 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
48282606 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:48283808 original size:26 final size:27
Alignment explanation
Indices: 48283728--48283837 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
48283718 GGGCCGAAAT
*
48283728 AATGACCAAAATACCCTCATAGAGTAA
1 AATGACCAAAATACCCTCATAGGGTAA
* *
48283755 AATGACCGAAATACCCTCATAGGATAA
1 AATGACCAAAATACCCTCATAGGGTAA
*
48283782 AATGATCAAAATACCC-CATAGGGTAA
1 AATGACCAAAATACCCTCATAGGGTAA
* * * *
48283808 AATCAACGAAATACCC-CTATAAGGTAA
1 AATGACCAAAATACCCTC-ATAGGGTAA
48283835 AAT
1 AAT
48283838 AACTGTAATA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.32
27 49 0.68
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (27 bp):
AATGACCAAAATACCCTCATAGGGTAA
Done.