Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 15 of 320
Found at i:4258495 original size:28 final size:28
Alignment explanation
Indices: 4258440--4258495 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
4258430 AACCTGAAAT
**
4258440 ATAGACCTAAAATTTTACCCAAGTCATG
1 ATAGACCTAAAATTTTACCCAAACCATG
* *
4258468 ATAGGCCTAAAATTTTGCCCAAACCATG
1 ATAGACCTAAAATTTTACCCAAACCATG
4258496 TCATATTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (28 bp):
ATAGACCTAAAATTTTACCCAAACCATG
Found at i:4261395 original size:23 final size:21
Alignment explanation
Indices: 4261354--4261412 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
4261344 AAAGAAATGA
4261354 TAAAAA-AAGAA-AATAATTAAG
1 TAAAAATAAGAATAAT-ATT-AG
4261375 TGAAAAATAAGAATAATATTAG
1 T-AAAAATAAGAATAATATTAG
*
4261397 TAATAATAA-AATAATA
1 TAAAAATAAGAATAATA
4261413 AATAATCTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
20 7 0.21
21 8 0.24
22 8 0.24
23 8 0.24
24 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.25
Consensus pattern (21 bp):
TAAAAATAAGAATAATATTAG
Found at i:4263361 original size:184 final size:183
Alignment explanation
Indices: 4263092--4263438 Score: 462
Period size: 184 Copynumber: 1.9 Consensus size: 183
4263082 CTTCAATCTA
** * * * *
4263092 TTCCACTGCAACTTCAGGGAGATAAGATCGGTATCTTTAGTCTACCCCACTGCAACCTTAGGGAG
1 TTCCACTGCAACTTCAGAAAAATAAGATCGCTATCTTTAGACTACCCCACTGCAACCTTAGGGAA
* * * * * * *
4263157 ATAAGACTTGTAATTTCAACCT-CTTTACTGCAACTTTAGAGAGATAAGGTTTGCTATCTTCAAT
66 ATAAGACTCGTAACTTCAACCTACTCTACTACAACTTCAGAGAGATAAGGTTT-ATAGCTTCAAT
* *
4263221 ATGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTGATTTG
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTGATTTG
* * * *
4263275 TTCCACTGCAACTTCAGAAAAATAAGATTCGCTGTCTTTAGACTACTCCACTGTAACTTTAGGGA
1 TTCCACTGCAACTTCAGAAAAATAAGA-TCGCTATCTTTAGACTACCCCACTGCAACCTTAGGGA
*
4263340 AATAAGACTCGTAACTTCAACCTACTCTACTACAACTTCAGAGAGATAAGGTTTATAGCTTTAAT
65 AATAAGACTCGTAACTTCAACCTACTCTACTACAACTTCAGAGAGATAAGGTTTATAGCTTCAAT
* * *
4263405 CTGCTCTACTGCAACTTCAGAGAGATAATATTTG
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTG
4263439 CTATCTTTAA
Statistics
Matches: 139, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
183 24 0.17
184 88 0.63
185 27 0.19
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (183 bp):
TTCCACTGCAACTTCAGAAAAATAAGATCGCTATCTTTAGACTACCCCACTGCAACCTTAGGGAA
ATAAGACTCGTAACTTCAACCTACTCTACTACAACTTCAGAGAGATAAGGTTTATAGCTTCAATA
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTGATTTG
Found at i:4263389 original size:44 final size:44
Alignment explanation
Indices: 4263056--4263525 Score: 182
Period size: 44 Copynumber: 10.5 Consensus size: 44
4263046 CGCTCCATTG
* * * * * * *
4263056 CAACTTCAGGGAGATAGGATTAGAAGCTTCAATCTATTCCACTG
1 CAACTTCAGAGAGATAAGATTCGTAGCTTTAATCTACTCCACTA
* * * * *
4263100 CAACTTCAGGGAGATAAGA-TCGGTATCTTTAGTCTACCCCACTG
1 CAACTTCAGAGAGATAAGATTC-GTAGCTTTAATCTACTCCACTA
* * * ** *
4263144 CAACCTT-AGGGAGATAAGACTT-GTA-ATTTCAACCT-CTTTACTG
1 CAA-CTTCAGAGAGATAAGA-TTCGTAGCTTT-AATCTACTCCACTA
* * * * * * * *
4263187 CAACTTTAGAGAGATAAGGTTTGCTATCTTCAATATGCTCCACTG
1 CAACTTCAGAGAGATAAGATTCG-TAGCTTTAATCTACTCCACTA
* * * * * ** *
4263232 CAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTGATTTGTTCCACTG
1 CAACTTCAGAGAGAT-A-A---G--ATTCGTAGCTTTAATCTACTCCACTA
* * *
4263283 CAACTTCAGAAAAATAAGATTCGCT-GTCTTTAGA-CTACTCCACTG
1 CAACTTCAGAGAGATAAGATTCG-TAG-CTTTA-ATCTACTCCACTA
* * * * * * * * *
4263328 TAACTTTAGGGAAATAAGACTCGTAACTTCAACCTACTCTACTA
1 CAACTTCAGAGAGATAAGATTCGTAGCTTTAATCTACTCCACTA
* ** * * *
4263372 CAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCTACTG
1 CAACTTCAGAGAGATAAGATTCGTAGCTTTAATCTACTCCACTA
* * *
4263416 CAACTTCAGAGAGATAATATTTGCTATCTTTAATCTACTCCACTA
1 CAACTTCAGAGAGATAAGATTCG-TAGCTTTAATCTACTCCACTA
* * * *
4263461 CAACTTTAGGGAGATAAGA-TCTGTGGCTTTAATCTGCTCCACTA
1 CAACTTCAGAGAGATAAGATTC-GTAGCTTTAATCTACTCCACTA
* *
4263505 CAACTTTAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATT
4263526 TGTAATTTGT
Statistics
Matches: 327, Mismatches: 74, Indels: 49
0.73 0.16 0.11
Matches are distributed among these distances:
42 5 0.02
43 24 0.07
44 168 0.51
45 91 0.28
46 4 0.01
47 1 0.00
49 1 0.00
50 2 0.01
51 27 0.08
52 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
CAACTTCAGAGAGATAAGATTCGTAGCTTTAATCTACTCCACTA
Found at i:4263424 original size:133 final size:133
Alignment explanation
Indices: 4263262--4263706 Score: 419
Period size: 133 Copynumber: 3.3 Consensus size: 133
4263252 TTGTAATTTG
* * * *
4263262 TAGCTTTGATTTGTTCCACTGCAACTTCAGAAAAATAAGATTCGCTGTCTTTAGACTACTCCACT
1 TAGCTTTAATCTGCTCCACTGCAACTTCAGAAAAATAAGATTCGCTATCTTTAGACTACTCCACT
* *
4263327 GTAACTTTAGGGAAATAAGACTCGTAACTTCAACCTACTCTACTACAACTTCAGAGAGATAAGGT
66 GTAACTTTAGGGAGATAAGACTCGTAACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGT
4263392 TTA
131 TTA
* * * * *
4263395 TAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAATATTTGCTATCTTTA-ATCTACTCCAC
1 TAGCTTTAATCTGCTCCACTGCAACTTCAGAAAAATAAGATTCGCTATCTTTAGA-CTACTCCAC
** ** * * * * *
4263459 TACAACTTTAGGGAGATAAGA-TCTGTGGCTTTAATCTGCTCCACTACAACTTTAGGGAGATAAG
65 TGTAACTTTAGGGAGATAAGACTC-GTAACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAG
*
4263523 ATTTGTAATTTG
129 ----G---TTTA
* * * * * *
4263535 TAGCTTTAATCTGTTCCATTGCAACTTCAGGAAAATAAGATTCGCTATCTTCAGTCTGCTCCACT
1 TAGCTTTAATCTGCTCCACTGCAACTTCAGAAAAATAAGATTCGCTATCTTTAGACTACTCCACT
* * * * * * *
4263600 GTAACTTTAGTGAGATAAGACTTGTCATTTCAACTTGC-CTCACTTCAACTTCAGAGAGATAAGA
66 GTAACTTTAGGGAGATAAGACTCGTAACTTCAACCTGCTCT-ACTACAACTTCAGAGAGATAAGG
4263664 TTTA
130 TTTA
* * * * * *
4263668 TGGTTTTAGTCTGCTCCACTGCATCTTCAGGAAGATAAG
1 TAGCTTTAATCTGCTCCACTGCAACTTCAGAAAAATAAG
4263707 GTTTATGGCT
Statistics
Matches: 245, Mismatches: 55, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
132 3 0.01
133 138 0.56
137 1 0.00
139 1 0.00
140 101 0.41
141 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (133 bp):
TAGCTTTAATCTGCTCCACTGCAACTTCAGAAAAATAAGATTCGCTATCTTTAGACTACTCCACT
GTAACTTTAGGGAGATAAGACTCGTAACTTCAACCTGCTCTACTACAACTTCAGAGAGATAAGGT
TTA
Found at i:4263462 original size:89 final size:89
Alignment explanation
Indices: 4263361--4263527 Score: 226
Period size: 89 Copynumber: 1.9 Consensus size: 89
4263351 TAACTTCAAC
* * * * *
4263361 CTACTCTACTACAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGA
1 CTACTCCACTACAACTTCAGAGAGATAAGATCTATAGCTTTAATCTGCTCCACTACAACTTCAGA
*
4263426 GAGATAATATTTGCTATCTTTAAT
66 GAGATAAGATTTGCTATCTTTAAT
* * * * * *
4263450 CTACTCCACTACAACTTTAGGGAGATAAGATCTGTGGCTTTAATCTGCTCCACTACAACTTTAGG
1 CTACTCCACTACAACTTCAGAGAGATAAGATCTATAGCTTTAATCTGCTCCACTACAACTTCAGA
4263515 GAGATAAGATTTG
66 GAGATAAGATTTG
4263528 TAATTTGTAG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 66 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (89 bp):
CTACTCCACTACAACTTCAGAGAGATAAGATCTATAGCTTTAATCTGCTCCACTACAACTTCAGA
GAGATAAGATTTGCTATCTTTAAT
Found at i:4263597 original size:140 final size:140
Alignment explanation
Indices: 4263222--4263666 Score: 478
Period size: 140 Copynumber: 3.2 Consensus size: 140
4263212 ATCTTCAATA
* * *
4263222 TGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTGATTTGTTCCACTGCAAC
1 TGCTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCACTGCAAC
* * * *
4263287 TTCAGAAAAATAAGATTCGCTGTCTTTAGACTACTCCACTGTAACTTTAGGGAAATAAGACTCGT
66 TTCAGGAAAATAAGATTCGCTATCTTTAGTCTACTCCACTGTAACTTTAGGGAGATAAGACTCGT
4263352 AACTTCAACC
131 AACTTCAACC
* * * * * * *
4263362 TACTCTACTACAACTTCAGAGAGATAAG----G---TTTATAGCTTTAATCTGCTCTACTGCAAC
1 TGCTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCACTGCAAC
* * * * **
4263420 TTCA-GAGAGATAATATTTGCTATCTTTAATCTACTCCACTACAACTTTAGGGAGATAAGA-TCT
66 TTCAGGA-AAATAAGATTCGCTATCTTTAGTCTACTCCACTGTAACTTTAGGGAGATAAGACTC-
** * *
4263483 GTGGCTTTAATC
129 GTAACTTCAACC
*
4263495 TGCTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCATTGCAAC
1 TGCTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCACTGCAAC
* * * *
4263560 TTCAGGAAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGTAACTTTAGTGAGATAAGACTTGT
66 TTCAGGAAAATAAGATTCGCTATCTTTAGTCTACTCCACTGTAACTTTAGGGAGATAAGACTCGT
* * *
4263625 CATTTCAACT
131 AACTTCAACC
* * *
4263635 TGC-CTCACTTCAACTTCAGAGAGATAAGATTT
1 TGCTC-CACTACAACTTTAGGGAGATAAGATTT
4263667 ATGGTTTTAG
Statistics
Matches: 242, Mismatches: 51, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
132 3 0.01
133 104 0.43
136 1 0.00
137 1 0.00
139 1 0.00
140 129 0.53
141 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (140 bp):
TGCTCCACTACAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCACTGCAAC
TTCAGGAAAATAAGATTCGCTATCTTTAGTCTACTCCACTGTAACTTTAGGGAGATAAGACTCGT
AACTTCAACC
Found at i:4263696 original size:44 final size:43
Alignment explanation
Indices: 4263372--4263754 Score: 211
Period size: 44 Copynumber: 8.5 Consensus size: 43
4263362 TACTCTACTA
* * * *
4263372 CAACTTCAGAGAGATAAGGTTTATAGCTTTAATCTGCTCTACTG
1 CAACTTCAG-GAGATAAGATTTATGGCTTTAGTCTGCTCCACTG
* * ** * * *
4263416 CAACTTCAGAGAGATAATATTTGCTATCTTTAATCTACTCCACTA
1 CAACTTCAG-GAGATAAGATTT-ATGGCTTTAGTCTGCTCCACTG
* * * * *
4263461 CAACTTTAGGGAGATAAGATCTGTGGCTTTAATCTGCTCCACTA
1 CAACTTCA-GGAGATAAGATTTATGGCTTTAGTCTGCTCCACTG
* * * *
4263505 CAACTTTAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCATTG
1 CAACTTCA-GGAGATAAGA-TT-T-A--TG--GCTTTAGTCTGCTCCACTG
* *
4263556 CAACTTCAGGAAAATAAGATTCGCTAT--CTTCAGTCTGCTCCACTG
1 CAACTTCAGG-AGATAAGATT---TATGGCTTTAGTCTGCTCCACTG
* * * * * *
4263601 TAACTTTAGTGAGATAAGA-CT-TGTCATTTCA-ACTTGC-CTCACTT
1 CAACTTCAG-GAGATAAGATTTATGGC-TTT-AGTC-TGCTC-CACTG
*
4263645 CAACTTCAGAGAGATAAGATTTATGGTTTTAGTCTGCTCCACTG
1 CAACTTCAG-GAGATAAGATTTATGGCTTTAGTCTGCTCCACTG
* * *
4263689 CATCTTCAGGAAGATAAGGTTTATGGCTTTAGTTTGCTCCACTG
1 CAACTTCAGG-AGATAAGATTTATGGCTTTAGTCTGCTCCACTG
*
4263733 CAACTTCCGGGAGATAAGATTT
1 CAACTT-CAGGAGATAAGATTT
4263755 GTCATGGTAG
Statistics
Matches: 266, Mismatches: 48, Indels: 50
0.73 0.13 0.14
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
42 1 0.00
43 5 0.02
44 142 0.53
45 72 0.27
46 5 0.02
49 3 0.01
50 4 0.02
51 31 0.12
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (43 bp):
CAACTTCAGGAGATAAGATTTATGGCTTTAGTCTGCTCCACTG
Found at i:4263895 original size:44 final size:44
Alignment explanation
Indices: 4263830--4263918 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
4263820 AATCCATTCT
** *
4263830 ACTGCAACTTCGGTGAAATAAGATTCGT-ATTCTCAATCTACTCC
1 ACTGCAACTTCAATGAAATAAGATTAGTGATT-TCAATCTACTCC
* *
4263874 ACTGCAACTTCAATGAGATAAGATTAGTGGTTTCAATCTACTCC
1 ACTGCAACTTCAATGAAATAAGATTAGTGATTTCAATCTACTCC
4263918 A
1 A
4263919 TTGTAATTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (44 bp):
ACTGCAACTTCAATGAAATAAGATTAGTGATTTCAATCTACTCC
Found at i:4275169 original size:30 final size:30
Alignment explanation
Indices: 4275133--4275197 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
4275123 AAGAATTGCA
4275133 TCTCGTAAGTTAGGACACAATGCTTCAAAT
1 TCTCGTAAGTTAGGACACAATGCTTCAAAT
4275163 TCTCGTAAGTTAGGACACAATGCTTCAAAT
1 TCTCGTAAGTTAGGACACAATGCTTCAAAT
4275193 TCTCG
1 TCTCG
4275198 AAACGAGAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (30 bp):
TCTCGTAAGTTAGGACACAATGCTTCAAAT
Found at i:4275856 original size:20 final size:20
Alignment explanation
Indices: 4275833--4275880 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
4275823 TTAAAATATG
* * *
4275833 ATAATTAATAAAACAATAAA
1 ATAAATAATAAAAAAAGAAA
*
4275853 ATAAATGATAAAAAAAGAAA
1 ATAAATAATAAAAAAAGAAA
4275873 ATAAATAA
1 ATAAATAA
4275881 GTGAAAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (20 bp):
ATAAATAATAAAAAAAGAAA
Found at i:4278308 original size:21 final size:22
Alignment explanation
Indices: 4278272--4278321 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
4278262 TTTTATTCGT
4278272 AAAAAAATTTGAAAAAAAAAAG
1 AAAAAAATTTGAAAAAAAAAAG
* *
4278294 AGAAAAATTTG-AAAACAAAAG
1 AAAAAAATTTGAAAAAAAAAAG
4278315 AAAAAAA
1 AAAAAAA
4278322 AGAACAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAAAAATTTGAAAAAAAAAAG
Found at i:4278322 original size:22 final size:20
Alignment explanation
Indices: 4278272--4278322 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 20
4278262 TTTTATTCGT
4278272 AAAAAAATTTGAAAAAAAAA
1 AAAAAAATTTGAAAAAAAAA
4278292 AGAGAAAAATTTGAAAACAAAAGA
1 A-A-AAAAATTTGAAAA-AAAA-A
4278316 AAAAAAA
1 AAAAAAA
4278323 GAACAAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 18 0.67
23 5 0.19
24 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (20 bp):
AAAAAAATTTGAAAAAAAAA
Found at i:4280310 original size:26 final size:25
Alignment explanation
Indices: 4280280--4280728 Score: 190
Period size: 26 Copynumber: 17.4 Consensus size: 25
4280270 AAACATATAT
4280280 TTTATTTTAAATAGTTTTATATATTA
1 TTTATTTTAAATA-TTTTATATATTA
* * *
4280306 TTTATTTTATATTTTTTACATATTA
1 TTTATTTTAAATATTTTATATATTA
* * * * *
4280331 GTTCTCTTAAACTATTTTATTTATCA
1 TTTATTTTAAA-TATTTTATATATTA
**
4280357 TTTA-TTTAAA-ATTGATT-TATGGTA
1 TTTATTTTAAATATT--TTATATATTA
* *
4280381 TTCATTTCAAAT-TGTTT-TAT-TGTA
1 TTTATTTTAAATAT-TTTATATAT-TA
* *
4280405 TATTATTTTAAGTTATATATATATATTAA
1 T-TTATTTTAA-ATAT-TTTATATATT-A
* ** *
4280434 CTAGTTACTTTAAACGGTTTTAT-TA-CA
1 -T--TTATTTTAAA-TATTTTATATATTA
4280461 TATTATTTTAAATTATTTTATATATTA
1 T-TTATTTTAAA-TATTTTATATATTA
**
4280488 TTTATTTTACGT-TTTTATATATACTA
1 TTTATTTTAAATATTTTATATAT--TA
*
4280514 TTTATTTTAAA-ATTTTACATATTA
1 TTTATTTTAAATATTTTATATATTA
*
4280538 TATATTTTAAAT-TTTTATATATGTTA
1 TTTATTTTAAATATTTTATATA--TTA
* * * *
4280564 TGTAGTTCAAACTATTTTATATGTTA
1 TTTATTTTAAA-TATTTTATATATTA
* *
4280590 TTTATTTTAAAATTCTTTTATATATTG
1 TTTATTTT-AAA-TATTTTATATATTA
* *
4280617 TTTATTTCAAACTGTTTTAT-TATTA
1 TTTATTTTAAA-TATTTTATATATTA
* * *
4280642 TTTACTTTAATTTTTTTATATATATTA
1 TTTATTTTAA-ATATTT-TATATATTA
* *
4280669 TTTATTTGAGAT-TTTT-TAT-TTA
1 TTTATTTTAAATATTTTATATATTA
* * * *
4280691 TTCATTTTGAATTGTTCTTATACATTA
1 TTTATTTT-AAATATT-TTATATATTA
4280718 TTTATTTTAAA
1 TTTATTTTAAA
4280729 CCATTATTTA
Statistics
Matches: 312, Mismatches: 76, Indels: 70
0.68 0.17 0.15
Matches are distributed among these distances:
22 9 0.03
23 8 0.03
24 47 0.15
25 75 0.24
26 93 0.30
27 50 0.16
28 12 0.04
29 4 0.01
30 5 0.02
31 9 0.03
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (25 bp):
TTTATTTTAAATATTTTATATATTA
Found at i:4280392 original size:24 final size:24
Alignment explanation
Indices: 4280360--4280405 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
4280350 TTTATCATTT
4280360 ATTTAAAATTGATTTATGGTATTC
1 ATTTAAAATTGATTTATGGTATTC
* * *
4280384 ATTTCAAATTGTTTTATTGTAT
1 ATTTAAAATTGATTTATGGTAT
4280406 ATTATTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (24 bp):
ATTTAAAATTGATTTATGGTATTC
Found at i:4280548 original size:76 final size:74
Alignment explanation
Indices: 4280461--4280727 Score: 204
Period size: 76 Copynumber: 3.5 Consensus size: 74
4280451 TTTTATTACA
* *
4280461 TATTATTTTAAATTATTTTATATATTATTTA-TTTTACGTTTTTATATATACTATTTATTTTAAA
1 TATTATTTTAAATTGTTTTATATATTATTTACTTTAAC-TTTTTATATATA-TATTTATTTTAAA
*
4280525 ATTTTACATAT
64 ATTTTATATAT
* * * * *
4280536 TATATATTTTAAATT-TTTATATATGTTATGTAGTTCAAACTATTTTATATGT-TATTTATTTTA
1 TAT-TATTTTAAATTGTTT-TATATATTATTTACTT-TAACT-TTTTATATATATATTTATTTTA
4280599 AAATTCTTTTATATAT
62 AAA---TTTTATATAT
* * * * *
4280615 TGTTTATTTCAAACTGTTTTAT-TATTATTTACTTTAATTTTTTTATATATATTATTTA-TTTGA
1 T-ATTATTTTAAATTGTTTTATATATTATTTACTTTAA-CTTTTTATATATA-TATTTATTTTAA
* *
4280678 GATTTTTTAT-T
63 AATTTTATATAT
* * *
4280689 TATTCATTTTGAATTGTTCTTATACATTATTTATTTTAA
1 TATT-ATTTTAAATTGTT-TTATATATTATTTACTTTAA
4280728 ACCATTATTT
Statistics
Matches: 152, Mismatches: 24, Indels: 31
0.73 0.12 0.15
Matches are distributed among these distances:
73 2 0.01
74 12 0.08
75 17 0.11
76 49 0.32
77 14 0.09
78 26 0.17
79 28 0.18
80 4 0.03
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (74 bp):
TATTATTTTAAATTGTTTTATATATTATTTACTTTAACTTTTTATATATATATTTATTTTAAAAT
TTTATATAT
Found at i:4280596 original size:52 final size:52
Alignment explanation
Indices: 4280463--4280729 Score: 228
Period size: 52 Copynumber: 5.2 Consensus size: 52
4280453 TTATTACATA
* * ** *
4280463 TTATTTTAAATTATTTTATATATTATTTATTTTACGTTTTTATATATACTAT
1 TTATTTCAAACTATTTTATATATTATTTATTTTAAATTTTTATATATATTAT
* * * *
4280515 TTATTTTAAA--ATTTTACATATTATATATTTTAAATTTTTATATATGTTAT
1 TTATTTCAAACTATTTTATATATTATTTATTTTAAATTTTTATATATATTAT
* * * *
4280565 GTAGTTCAAACTATTTTATATGTTATTTATTTTAAAATTCTTT-TATATATTGT
1 TTATTTCAAACTATTTTATATATTATTTATTTT-AAATT-TTTATATATATTAT
* * *
4280618 TTATTTCAAACTGTTTTAT-TATTATTTACTTTAATTTTTTTATATATATTAT
1 TTATTTCAAACTATTTTATATATTATTTATTTTAA-ATTTTTATATATATTAT
* * * * *
4280670 TTATTTGAGA-T-TTTT-TAT-TTATTCATTTTGAATTGTTCT-TATACATTAT
1 TTATTTCAAACTATTTTATATATTATTTATTTTAAATT-TT-TATATATATTAT
*
4280719 TTATTTTAAAC
1 TTATTTCAAAC
4280730 CATTATTTAC
Statistics
Matches: 175, Mismatches: 30, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
48 2 0.01
49 30 0.17
50 47 0.27
51 6 0.03
52 58 0.33
53 29 0.17
54 3 0.02
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.61
Consensus pattern (52 bp):
TTATTTCAAACTATTTTATATATTATTTATTTTAAATTTTTATATATATTAT
Found at i:4282337 original size:10 final size:10
Alignment explanation
Indices: 4282324--4282390 Score: 55
Period size: 10 Copynumber: 6.7 Consensus size: 10
4282314 AGATGAGTCT
4282324 AAAATTATAA
1 AAAATTATAA
** *
4282334 AAAAAAATTA
1 AAAATTATAA
4282344 AAAATTATAA
1 AAAATTATAA
4282354 AAAA-TATAA
1 AAAATTATAA
* *
4282363 ATAATTATTTA
1 AAAATTA-TAA
*
4282374 AAAATTCTAA
1 AAAATTATAA
*
4282384 GAAATTA
1 AAAATTA
4282391 AAATATGAAA
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
9 8 0.19
10 27 0.64
11 7 0.17
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (10 bp):
AAAATTATAA
Found at i:4282355 original size:19 final size:19
Alignment explanation
Indices: 4282324--4282370 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
4282314 AGATGAGTCT
4282324 AAAATTATAAAAAAAAATTA
1 AAAATTATAAAAAAAAA-TA
*
4282344 AAAATTAT-AAAAAATATA
1 AAAATTATAAAAAAAAATA
4282362 AATAATTAT
1 AA-AATTAT
4282371 TTAAAAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.16
19 13 0.52
20 8 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAAAAAAATA
Found at i:4282358 original size:30 final size:31
Alignment explanation
Indices: 4282324--4282395 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
4282314 AGATGAGTCT
4282324 AAAATTATAAA-AAAAAATTAAAAATTATAA
1 AAAATTATAAATAAAAAATTAAAAATTATAA
** * *
4282354 AAAA-TATAAATAATTATTTAAAAATTCTAA
1 AAAATTATAAATAAAAAATTAAAAATTATAA
*
4282384 GAAATTA-AAATA
1 AAAATTATAAATA
4282396 TGAAAAGCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 6 0.17
30 27 0.77
31 2 0.06
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (31 bp):
AAAATTATAAATAAAAAATTAAAAATTATAA
Found at i:4282376 original size:19 final size:17
Alignment explanation
Indices: 4282335--4282370 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
4282325 AAATTATAAA
4282335 AAAAAATTAAAAATTAT
1 AAAAAATTAAAAATTAT
4282352 AAAAAATATAAATAATTAT
1 AAAAAAT-TAAA-AATTAT
4282371 TTAAAAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 4 0.24
19 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAAATTAAAAATTAT
Found at i:4282571 original size:20 final size:20
Alignment explanation
Indices: 4282548--4282609 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
4282538 CAAAACTATT
4282548 AAAAAAATTTAAAAATTAT-
1 AAAAAAATTTAAAAATTATA
* * *
4282567 AAAAATATATTAATAATTCTA
1 AAAAAAAT-TTAAAAATTATA
* *
4282588 AAAATAGATATAAAAATTATA
1 AAAA-AAATTTAAAAATTATA
4282609 A
1 A
4282610 GAACTATAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 7 0.21
20 9 0.27
21 14 0.42
22 3 0.09
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAAAATTTAAAAATTATA
Found at i:4282572 original size:9 final size:9
Alignment explanation
Indices: 4282545--4282619 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
4282535 GTGCAAAACT
*
4282545 ATTAAAAAA
1 ATTATAAAA
4282554 ATT-TAAAA
1 ATTATAAAA
4282562 ATTATAAAA
1 ATTATAAAA
*
4282571 ATATATTAATA
1 AT-TA-TAAAA
*
4282582 ATTCTAAAA
1 ATTATAAAA
4282591 ATAGATATAAAA
1 AT---TATAAAA
*
4282603 ATTATAAGA
1 ATTATAAAA
*
4282612 ACTATAAA
1 ATTATAAA
4282620 CCCTGTTTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
8 7 0.13
9 28 0.54
10 3 0.06
11 6 0.12
12 8 0.15
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (9 bp):
ATTATAAAA
Found at i:4282721 original size:8 final size:9
Alignment explanation
Indices: 4282706--4282732 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
4282696 AAACTATTTA
4282706 ATTTTTTTT
1 ATTTTTTTT
4282715 ATTTTTTTT
1 ATTTTTTTT
4282724 ATTTTTTTT
1 ATTTTTTTT
4282733 CATATTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:4282838 original size:17 final size:18
Alignment explanation
Indices: 4282816--4282849 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4282806 TAATTATTAA
4282816 TATTTTTGTATA-TTTTC
1 TATTTTTGTATAGTTTTC
*
4282833 TATTTTTTTATAGTTTT
1 TATTTTTGTATAGTTTT
4282850 ACACTTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.03, G:0.06, T:0.74
Consensus pattern (18 bp):
TATTTTTGTATAGTTTTC
Found at i:4285402 original size:24 final size:24
Alignment explanation
Indices: 4285375--4285459 Score: 91
Period size: 24 Copynumber: 3.5 Consensus size: 24
4285365 ATTCGGGAAT
*
4285375 GGTGGAGGATATGACGGCGGAGGC
1 GGTGGTGGATATGACGGCGGAGGC
** *
4285399 GGTGGTGGCGGAT-ATGGCGGAGGC
1 GGTGGTGG-ATATGACGGCGGAGGC
* * *
4285423 GGTGGCGGATATGGCGGCGGTGGC
1 GGTGGTGGATATGACGGCGGAGGC
4285447 GGTGGTGGATATG
1 GGTGGTGGATATG
4285460 GAGGTTGACG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
23 2 0.04
24 44 0.92
25 2 0.04
ACGTcount: A:0.14, C:0.12, G:0.56, T:0.18
Consensus pattern (24 bp):
GGTGGTGGATATGACGGCGGAGGC
Found at i:4285443 original size:18 final size:18
Alignment explanation
Indices: 4285396--4285448 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 18
4285386 TGACGGCGGA
*
4285396 GGCGGTGGTGGCGGATAT
1 GGCGGCGGTGGCGGATAT
4285414 GGCGGAGGCGGTGGCGGATAT
1 GGC---GGCGGTGGCGGATAT
4285435 GGCGGCGGTGGCGG
1 GGCGGCGGTGGCGG
4285449 TGGTGGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 14 0.45
21 17 0.55
ACGTcount: A:0.09, C:0.15, G:0.60, T:0.15
Consensus pattern (18 bp):
GGCGGCGGTGGCGGATAT
Found at i:4287635 original size:29 final size:30
Alignment explanation
Indices: 4287587--4287700 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
4287577 ACTTTTCTCA
4287587 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4287617 ACTAGCCAC-TCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
4287646 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4287676 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
4287701 CTTGTACCTA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
29 28 0.35
30 52 0.65
ACGTcount: A:0.26, C:0.50, G:0.04, T:0.20
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:4287653 original size:59 final size:60
Alignment explanation
Indices: 4287587--4287700 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 60
4287577 ACTTTTCTCA
* *
4287587 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCAC-TCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
4287646 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
4287701 CTTGTACCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
59 39 0.75
60 13 0.25
ACGTcount: A:0.26, C:0.50, G:0.04, T:0.20
Consensus pattern (60 bp):
ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCAACTCC
Found at i:4288314 original size:49 final size:47
Alignment explanation
Indices: 4288184--4288321 Score: 133
Period size: 49 Copynumber: 2.9 Consensus size: 47
4288174 CCTTTTTTGT
*
4288184 TATTAT-TATATT-TCTTAATATTATATTATATATAT-TCTTTTAATA
1 TATTATGTATATTCT-TTAATATTATATTATATATATATATTTTAATA
* * *
4288229 TATTAGGTATATT-TTAAAT-TCTATATTACGTATATATATATTTATACTA
1 TATTATGTATATTCTTTAATAT-TATATTA--TATATATATATTT-TAATA
* *
4288278 TTTTATGTATATATCTTTAATATTATATTATTTATATATATTTT
1 TATTATGTATAT-TCTTTAATATTATATTATATATATATATTTT
4288322 TTACATGTTA
Statistics
Matches: 76, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 1 0.01
45 16 0.21
46 7 0.09
47 7 0.09
48 5 0.07
49 26 0.34
50 1 0.01
51 12 0.16
52 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (47 bp):
TATTATGTATATTCTTTAATATTATATTATATATATATATTTTAATA
Found at i:4288315 original size:27 final size:29
Alignment explanation
Indices: 4288285--4288345 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
4288275 CTATTTTATG
*
4288285 TATATA-TCTTTA-ATATTATATTATTTA
1 TATATATTCTTTACATATTATATTATGTA
* * *
4288312 TATATATTTTTTACATGTTATCTTATGTA
1 TATATATTCTTTACATATTATATTATGTA
4288341 TATAT
1 TATAT
4288346 CTTAACTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.21
28 5 0.18
29 17 0.61
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (29 bp):
TATATATTCTTTACATATTATATTATGTA
Found at i:4288359 original size:27 final size:26
Alignment explanation
Indices: 4288279--4288367 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
4288269 TTTATACTAT
*
4288279 TTTATGTATATATCTTTAATATTATATTA
1 TTTATGTATATATC-TT-A-ACTATATTA
* * * *
4288308 TTTATATATAT-TTTTTAC-ATGTTA
1 TTTATGTATATATCTTAACTATATTA
4288332 TCTTATGTATATATCTTAACTATATTA
1 T-TTATGTATATATCTTAACTATATTA
*
4288359 TGTATGTAT
1 TTTATGTAT
4288368 TTTTAACACT
Statistics
Matches: 47, Mismatches: 10, Indels: 9
0.71 0.15 0.14
Matches are distributed among these distances:
24 6 0.13
25 10 0.21
26 12 0.26
27 8 0.17
28 1 0.02
29 10 0.21
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (26 bp):
TTTATGTATATATCTTAACTATATTA
Found at i:4288362 original size:22 final size:23
Alignment explanation
Indices: 4288334--4288385 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
4288324 ACATGTTATC
4288334 TTATGTATATA-TCTTAACTA-TA
1 TTATGTATATATTCTTAAC-ACTA
* *
4288356 TTATGTATGTATTTTTAACACTA
1 TTATGTATATATTCTTAACACTA
4288379 TTATGTA
1 TTATGTA
4288386 CTATTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 11 0.42
23 15 0.58
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.52
Consensus pattern (23 bp):
TTATGTATATATTCTTAACACTA
Found at i:4288555 original size:16 final size:15
Alignment explanation
Indices: 4288531--4288578 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4288521 TAATTATTAT
*
4288531 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4288547 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4288562 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4288578 T
1 T
4288579 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4288566 original size:7 final size:8
Alignment explanation
Indices: 4288531--4288582 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4288521 TAATTATTAT
*
4288531 TATTCTAA
1 TATTTTAA
*
4288539 TATTTTGA
1 TATTTTAA
4288547 TATTTTAA
1 TATTTTAA
4288555 TATTTT-A
1 TATTTTAA
4288562 TATTTTATA
1 TATTTTA-A
*
4288571 TATTTTAT
1 TATTTTAA
4288579 TATT
1 TATT
4288583 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4297024 original size:69 final size:69
Alignment explanation
Indices: 4296849--4297024 Score: 201
Period size: 71 Copynumber: 2.5 Consensus size: 69
4296839 CTTTCCAAGG
* * ** *
4296849 AAAATCAACTCATGTTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
4296914 TTTT
66 TTTT
* ** * *
4296918 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTT
1 --AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT
4296983 ATGTTTT
64 -TGTTTT
** *
4296990 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4297025 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 31 0.34
71 54 0.60
72 5 0.06
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:4297145 original size:72 final size:71
Alignment explanation
Indices: 4297028--4297188 Score: 232
Period size: 72 Copynumber: 2.2 Consensus size: 71
4297018 TAAGCCTTTT
* * ** *
4297028 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
4297093 TAATTTC
65 TAATTTC
* *
4297100 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
4297165 TATTTTC
65 TAATTTC
4297172 AATTTCTGTTTTCAAAA
1 AATTTCTGTTTTCAAAA
4297189 AAAATTGACT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
71 9 0.11
72 71 0.89
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (71 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
AATTTC
Found at i:4297224 original size:200 final size:194
Alignment explanation
Indices: 4296849--4297376 Score: 779
Period size: 200 Copynumber: 2.7 Consensus size: 194
4296839 CTTTCCAAGG
* * * * * * *
4296849 AAAATCAACTCATGTTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * * *
4296913 TTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 GTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
4296978 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 AATTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
4297042 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * *
4297107 GTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 GTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
4297172 AATTTCTGTTTTCAAAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
131 AATTTATGTTTT------AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
4297237 TTTTC
190 TTTTC
4297242 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
4297307 GTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
66 GTT-TT--AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATT
4297372 TTCAA
128 TTCAA
4297377 NNNNNNNNNN
Statistics
Matches: 299, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
193 56 0.19
194 65 0.22
200 120 0.40
201 2 0.01
203 56 0.19
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (194 bp):
AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:4297257 original size:128 final size:128
Alignment explanation
Indices: 4297100--4297352 Score: 357
Period size: 128 Copynumber: 2.0 Consensus size: 128
4297090 AGGTAATTTC
* *
4297100 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
* ** **
4297165 TATTTTCAATTTCTGTT-TTCAAAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT
66 TAATTTCAATTTCTGTTGTT-AAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTT
* * ** *
4297228 AATTTTTGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
*
4297292 GTAATTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
65 GTAATTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCT
4297353 CAGGACACGC
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
128 99 0.90
129 11 0.10
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35
Consensus pattern (128 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTT
Found at i:4307530 original size:11 final size:11
Alignment explanation
Indices: 4307514--4307545 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
4307504 ATGCGTCCGT
4307514 TTTGAGGATAG
1 TTTGAGGATAG
4307525 TTTGAGGGATAG
1 TTTGA-GGATAG
4307537 TTTGAGGAT
1 TTTGAGGAT
4307546 TTTGATTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (11 bp):
TTTGAGGATAG
Found at i:4309576 original size:29 final size:28
Alignment explanation
Indices: 4309534--4309641 Score: 159
Period size: 27 Copynumber: 3.9 Consensus size: 28
4309524 AAACTTTTCT
4309534 CACTAGCCACCTTTTCCACCACCAACTC
1 CACTAGCCACCTTTTCCACCACCAACTC
4309562 CACTAGCCCACCTTTTCCACCACCAACTC
1 CACTAG-CCACCTTTTCCACCACCAACTC
4309591 CAC-AGCCACCCTTTTCCACCACC-ACTC
1 CACTAGCCA-CCTTTTCCACCACCAACTC
*
4309618 CACTA-CCACACTTCTCCACCACCA
1 CACTAGCCAC-CTTTTCCACCACCA
4309642 CTTGTACCTA
Statistics
Matches: 74, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
26 1 0.01
27 25 0.34
28 23 0.31
29 25 0.34
ACGTcount: A:0.25, C:0.53, G:0.03, T:0.19
Consensus pattern (28 bp):
CACTAGCCACCTTTTCCACCACCAACTC
Found at i:4309643 original size:27 final size:29
Alignment explanation
Indices: 4309534--4309641 Score: 154
Period size: 28 Copynumber: 3.9 Consensus size: 29
4309524 AAACTTTTCT
4309534 CACTAGCCAC-CTTTTCCACCACCAACTC
1 CACTAGCCACACTTTTCCACCACCAACTC
4309562 CACTAGCC-CACCTTTTCCACCACCAACTC
1 CACTAGCCACA-CTTTTCCACCACCAACTC
*
4309591 CAC-AGCCACCCTTTTCCACCACC-ACTC
1 CACTAGCCACACTTTTCCACCACCAACTC
*
4309618 CACTA-CCACACTTCTCCACCACCA
1 CACTAGCCACACTTTTCCACCACCA
4309642 CTTGTACCTA
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
27 24 0.33
28 26 0.36
29 22 0.31
ACGTcount: A:0.25, C:0.53, G:0.03, T:0.19
Consensus pattern (29 bp):
CACTAGCCACACTTTTCCACCACCAACTC
Found at i:4310256 original size:15 final size:15
Alignment explanation
Indices: 4310210--4310270 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
4310200 ATTACGTATA
*
4310210 TATATATTATACTATT
1 TATATA-TATATTATT
* * *
4310226 T-TATGTATAATCTT
1 TATATATATATTATT
4310240 TA-ATATTATATTATT
1 TATATA-TATATTATT
4310255 TATATATATATTATT
1 TATATATATATTATT
4310270 T
1 T
4310271 TACATGTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
14 10 0.28
15 22 0.61
16 4 0.11
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (15 bp):
TATATATATATTATT
Found at i:4310310 original size:22 final size:24
Alignment explanation
Indices: 4310282--4310340 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
4310272 ACATGTTATC
4310282 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
4310304 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
4310329 TTATGTACATAT
1 TTATGTATATAT
4310341 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:4310330 original size:25 final size:25
Alignment explanation
Indices: 4310298--4310346 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
4310288 ATATATCTTA
**
4310298 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
4310323 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
4310347 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:4310524 original size:16 final size:15
Alignment explanation
Indices: 4310500--4310547 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
4310490 TAATTATTAT
*
4310500 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
4310516 TATTTTAATATTTTA
1 TATTTTAATATTTTA
4310531 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
4310547 T
1 T
4310548 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:4310535 original size:7 final size:8
Alignment explanation
Indices: 4310500--4310551 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
4310490 TAATTATTAT
*
4310500 TATTCTAA
1 TATTTTAA
*
4310508 TATTTTGA
1 TATTTTAA
4310516 TATTTTAA
1 TATTTTAA
4310524 TATTTT-A
1 TATTTTAA
4310531 TATTTTATA
1 TATTTTA-A
*
4310540 TATTTTAT
1 TATTTTAA
4310548 TATT
1 TATT
4310552 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:4318988 original size:69 final size:70
Alignment explanation
Indices: 4318813--4318988 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
4318803 CTTTCCAAGG
* ** *
4318813 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*
4318878 TTTTT
66 GTTTT
* ** * *
4318883 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
4318948 TGTTTT
65 TGTTTT
** *
4318954 -AAATTTACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4318989 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
69 31 0.34
71 60 0.66
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:4319259 original size:148 final size:147
Alignment explanation
Indices: 4319000--4319340 Score: 425
Period size: 148 Copynumber: 2.3 Consensus size: 147
4318990 TTAATTTTTT
* ** *
4319000 TTTTCAAAATCAACTCATATTGCTAGATGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
*
4319065 TTTCTGTTGTTAAAAAAAAATCCACTCATATTGCGAGAAATGAGTTGAGCCTCAGG-ACACGCTG
66 TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GGTACACGCTG
4319129 AGGTAATTTCAATTTCTG
130 AGGTAATTTCAATTTCTG
* * * *
4319147 TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
* ** *
4319212 ATTTCTGTT-TTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATG
65 ATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGG-T-ACACG
*
4319276 CTGAGGTATTTTCAATTTCTG
127 CTGAGGTAATTTCAATTTCTG
* **
4319297 TTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTT-----CAAAATCAACTCATATTGCGAGAAATGAGTTGAGC
4319341 TTCAGATTAC
Statistics
Matches: 166, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
147 13 0.08
148 94 0.57
150 28 0.17
154 27 0.16
155 4 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (147 bp):
TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAA
TTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGTACACGCTGA
GGTAATTTCAATTTCTG
Found at i:4319291 original size:78 final size:76
Alignment explanation
Indices: 4319005--4319345 Score: 442
Period size: 76 Copynumber: 4.5 Consensus size: 76
4318995 TTTTTTTTTC
* *
4319005 AAAATCAACTCATATTGCTAGATGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4319070 GTTGTT-AAAAA
66 GTT-TTCAAAAA
* *
4319081 AAAATCCACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4319146 GTTTTC----A
66 GTTTTCAAAAA
* * * * * * *
4319153 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
4319218 GTTTTCAAAAA
66 GTTTTCAAAAA
* * * *
4319229 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
*
4319293 TCTGTTTTAAAAAA
63 TCTGTTTTCAAAAA
* *
4319307 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAG
4319346 ATTACACACT
Statistics
Matches: 235, Mismatches: 21, Indels: 15
0.87 0.08 0.06
Matches are distributed among these distances:
72 65 0.28
75 3 0.01
76 98 0.42
78 68 0.29
79 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTCAAAAA
Found at i:4319580 original size:72 final size:72
Alignment explanation
Indices: 4319485--4319633 Score: 210
Period size: 72 Copynumber: 2.1 Consensus size: 72
4319475 TAATTTCTAC
* * * *
4319485 TTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCA
4319550 ATTTTTG
66 ATTTTTG
** *
4319557 TGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 T-TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
*
4319621 AATTTTCG
65 AATTTTTG
4319629 TTTTT
1 TTTTT
4319634 TTAATTTATG
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
71 4 0.06
72 61 0.88
73 4 0.06
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (72 bp):
TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCA
ATTTTTG
Found at i:4319816 original size:77 final size:77
Alignment explanation
Indices: 4319650--4319949 Score: 350
Period size: 77 Copynumber: 4.0 Consensus size: 77
4319640 TATGTTTCAA
* * *
4319650 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTC-AAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
*
4319712 T-T-TTGTTTGTC
66 TCTATT-TTTATC
*
4319723 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
4319786 TCTATTTTTATC
66 TCTATTTTTATC
* * *
4319798 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
* **
4319863 TTTGCTTTT-T-
66 TCTATTTTTATC
* * * **
4319873 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACG-TCGAGGTCCTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTATTTTCA
4319937 AATTCTATTTTTA
63 AATTCTATTTTTA
4319950 ATTTCTTTTT
Statistics
Matches: 195, Mismatches: 21, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
71 38 0.19
73 15 0.08
74 4 0.02
75 46 0.24
76 4 0.02
77 88 0.45
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAAAT
TCTATTTTTATC
Found at i:4319914 original size:75 final size:74
Alignment explanation
Indices: 4319650--4319915 Score: 351
Period size: 77 Copynumber: 3.6 Consensus size: 74
4319640 TATGTTTCAA
* * * *
4319650 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC--AAGACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
*
4319713 TTTGTTTGT
66 TTTGTTTTT
* * *
4319722 -CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC-AAT
*
4319786 TCTATT-TTTATC
65 T-T-TTGTTT-TT
*
4319798 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
4319863 TTTGCTTTTT
66 TTTG-TTTTT
* *
4319873 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
4319916 CCACACGTCG
Statistics
Matches: 169, Mismatches: 16, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
71 37 0.22
73 15 0.09
74 6 0.04
75 46 0.27
76 9 0.05
77 56 0.33
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
TTTGTTTTT
Found at i:4320098 original size:416 final size:418
Alignment explanation
Indices: 4319571--4320327 Score: 1007
Period size: 416 Copynumber: 1.8 Consensus size: 418
4319561 TTAATTTCAA
* * *
4319571 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCGAGAGGTGAGTTGAACCTCA-GACACGCTGAGGTATTTTCAATTTTCGTATTTTC
* *
4319636 AATTTATGTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG-ACGCTGA
65 AATTTATGTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACACTGA
* ** * *
4319700 GGTAATTTCAATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
130 GGTAATTTCAA--TTT-ATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG
*
4319764 ACACGCTGAGATATTTTCAA-AT-T-CT-ATTT-T-TATCAAAAAAATCAACTCATATTGTGAGA
192 ACACGCTGAGATATTTTCAATATCTGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGA
* *
4319823 GGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTTTGCTTTTT-AAAAGAATCAACTC
257 GGTGAGTTGAGCCTC---ACACGCTGAGGTATTTTCAATTTCT-ATTTTTCAAAA-AATCAACTC
*
4319887 ATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTATTTTTAAT
317 ATATTGCGAAAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTATTTTTAAT
4319952 TTCTTTTTTTTTAATTTATGTGTTTCAAAAAAATCAG
382 TTCTTTTTTTTTAATTTATGTGTTTCAAAAAAATCAG
* * *
4319989 CTCATATTGCGAGAGGTGAGTTGAACCTCA-AGACGCTGAGGTGTTTTCCA-TTTC-TATTTTCA
1 CTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCGTATTTTCA
* * * * * *
4320051 ATTTCTGTTTTAATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATT
66 ATTTATGTTTCAA--AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAG-CACACT
*
4320116 GAGGTATTTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
128 GAGGTAATTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA
* * * * * ***
4320181 CCCGTTGAGGTATTTTCAATTTCTGCTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGA
193 CACGCTGAGATATTTTCAATATCTGCT-AATTTATGTATCAAAAAAATCAACTCATATTGCGAGA
* *
4320246 GGTGAGTTGAGCCTCACATGCTGAGGTGTTTTCAATTTCTATTTTTCAAAAAATCAACTCATATT
257 GGTGAGTTGAGCCTCACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAATCAACTCATATT
4320311 GCGAAAGGTGAGTTGAG
322 GCGAAAGGTGAGTTGAG
4320328 CCTTGGCTTA
Statistics
Matches: 292, Mismatches: 34, Indels: 25
0.83 0.10 0.07
Matches are distributed among these distances:
414 17 0.06
415 7 0.02
416 115 0.39
417 1 0.00
418 45 0.15
419 37 0.13
420 26 0.09
421 4 0.01
422 1 0.00
423 39 0.13
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (418 bp):
CTCATATTGCGAGAGGTGAGTTGAACCTCAGACACGCTGAGGTATTTTCAATTTTCGTATTTTCA
ATTTATGTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAAGCACACTGAG
GTAATTTCAATTTATCATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACAC
GCTGAGATATTTTCAATATCTGCTAATTTATGTATCAAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTCACACGCTGAGGTATTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGA
AAGGTGAGTTGAGTCTCGGGCCACACGTCGAGGTCCTTTCAAATTCTATTTTTAATTTCTTTTTT
TTTAATTTATGTGTTTCAAAAAAATCAG
Found at i:4320165 original size:71 final size:71
Alignment explanation
Indices: 4320065--4320202 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
4320055 CTGTTTTAAT
* *
4320065 TCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
4320130 TTATCA
66 TTATCA
* *
4320136 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
4320201 TT
66 TT
4320203 CTGCTCAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:4320305 original size:155 final size:156
Alignment explanation
Indices: 4319974--4320326 Score: 441
Period size: 155 Copynumber: 2.2 Consensus size: 156
4319964 AATTTATGTG
* * *
4319974 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCA
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAA
** * *
4320039 TTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACC
65 TTTC-ATGCTCAATTTATGTTTT-ATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
4320104 TCAAGTCACATTGAGGTATTTTCAATTTAT
128 TCAAGTCACA-TGAGGTATTTTCAATTTAT
** *
4320134 CATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACCCGTTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA--CGCTGAGGTATTTTCA
*
4320199 ATTTC-TGCTCAATTTATG-TTT-TTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
64 ATTTCATGCTCAATTTATGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
* *
4320260 CACA-T-GC-TGAGGTGTTTTCAATTTCTATT
129 CA-AGTCACATGAGGTATTTTCAA-TT-TA-T
*
4320289 TTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
4320327 GCCTTGGCTT
Statistics
Matches: 171, Mismatches: 16, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
152 13 0.08
153 2 0.01
154 3 0.02
155 74 0.43
156 4 0.02
158 3 0.02
159 52 0.30
160 2 0.01
161 18 0.11
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (156 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAAT
TTCATGCTCAATTTATGTTTTATTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA
AGTCACATGAGGTATTTTCAATTTAT
Found at i:4320398 original size:78 final size:75
Alignment explanation
Indices: 4320207--4320448 Score: 307
Period size: 78 Copynumber: 3.2 Consensus size: 75
4320197 CAATTTCTGC
*
4320207 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--C-ACATGC
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
*
4320267 TGAGGTGTTT
66 TGAGGTTTTT
* * *
4320277 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TACATG
4320342 CTGAGGTATTTT
65 CTGAGGT-TTTT
* * * *
4320354 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCGGCTCACAT
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT-ACAT
4320419 GCTGAGGTCTTTT
64 GCTGAGGT-TTTT
*
4320432 T-AATTTCTGCTTTTCAA
1 TCAATTTCTGTTTTTCAA
4320449 TTTCTGTTTT
Statistics
Matches: 148, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
70 14 0.09
71 35 0.24
72 1 0.01
74 1 0.01
76 13 0.09
77 30 0.20
78 54 0.36
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (75 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
TGAGGTTTTT
Found at i:4320450 original size:14 final size:15
Alignment explanation
Indices: 4320425--4320466 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
4320415 ACATGCTGAG
*
4320425 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
4320440 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
4320454 GTTTTTTCAATTT
1 GTCTTTTCAATTT
4320467 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:4320462 original size:15 final size:14
Alignment explanation
Indices: 4320428--4320477 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
4320418 TGCTGAGGTC
4320428 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
4320441 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
4320455 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
4320470 TTTTTCAA
1 TTTTTCAA
4320478 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:4320577 original size:73 final size:73
Alignment explanation
Indices: 4320458--4320619 Score: 216
Period size: 73 Copynumber: 2.2 Consensus size: 73
4320448 ATTTCTGTTT
* * * * *
4320458 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
4320523 TGAGGTAA
66 TGAGGTAA
* * *
4320531 TTTCAATTTCTGTTTGTCAAACATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACAC
**
4320596 GCTGAGGTCT
64 GCTGAGGTAA
4320606 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
4320620 CTTCAATTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 52 0.68
75 25 0.32
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (73 bp):
TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTAA
Found at i:4320594 original size:177 final size:181
Alignment explanation
Indices: 4320274--4320633 Score: 577
Period size: 177 Copynumber: 2.0 Consensus size: 181
4320264 TGCTGAGGTG
* * *
4320274 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTTGGCTTAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGC-GAC
* *
4320339 ACGCTGAGGTATTTTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTG
65 ACGCTGAGGTATATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
4320404 AGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTT-TTCAATTTCTGTT
129 AGCCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG-TTCTTCAATTTCTGTT
4320457 TTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG-GACA
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
* *
4320520 CGCTGAGGTA-ATTTCAATTTCTGTTTGTC-AAACATTAACTCATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
4320583 CCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTT
131 CCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTT
4320634 CGTAAAAAAA
Statistics
Matches: 167, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
176 2 0.01
177 77 0.46
179 18 0.11
180 13 0.08
182 39 0.23
183 18 0.11
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (181 bp):
TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTT
Found at i:4320626 original size:14 final size:14
Alignment explanation
Indices: 4320607--4320634 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4320597 CTGAGGTCTT
4320607 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
4320621 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
4320635 GTAAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:4320658 original size:90 final size:88
Alignment explanation
Indices: 4320532--4320714 Score: 244
Period size: 90 Copynumber: 2.1 Consensus size: 88
4320522 CTGAGGTAAT
* * * * *
4320532 TTCAATTTCTGTTTGTCAAACATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACAT
1 TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
*
4320596 GCTGAGGT-CTTTTCAATTTCTGTTC
63 GCTGAGGTACTTTTAAATTTCTGTTC
4320621 TTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTCAATTTCTGTTCGT-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
4320686 TGAGGTATTTTTAAATTTCTGTTT
65 TGAGGTACTTTTAAATTTCTGTTC
4320710 TTCAA
1 TTCAA
4320715 AAAATCAACT
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
88 11 0.13
89 34 0.41
90 36 0.43
91 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (88 bp):
TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTACTTTTAAATTTCTGTTC
Found at i:4320747 original size:75 final size:73
Alignment explanation
Indices: 4320624--4320863 Score: 304
Period size: 75 Copynumber: 3.2 Consensus size: 73
4320614 TCTGTTCTTC
* *
4320624 AATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGA
4320689 GGTATTTTT
65 GGTATTTTT
* *
4320698 AAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTG
1 -AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTG
* *
4320763 AGGTAATTTC
64 AGGTATTTTT
* * * *
4320773 AATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTGGAGTCTCGGCTCACATGCT
1 AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCT
*
4320837 GAGGTCTTTTT
63 GAGGTATTTTT
4320848 AATTTCTGCTTT-TCAA
1 AATTTCTG-TTTGTCAA
4320864 TTTCTGTTTT
Statistics
Matches: 144, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
72 2 0.01
73 34 0.24
74 13 0.09
75 91 0.63
76 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (73 bp):
AATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAG
GTATTTTT
Found at i:4320765 original size:163 final size:161
Alignment explanation
Indices: 4320441--4320782 Score: 470
Period size: 163 Copynumber: 2.1 Consensus size: 161
4320431 TTAATTTCTG
* * **
4320441 CTTTTCAATTTCTGTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGT
1 CTTTTCAATTTCTG-TTCTTCAATTTATATTGTAAAAAAATCAACTCATATTGCGAAAGGTGAGT
* * * * *
4320506 TGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAACATTAACTCATATTGCGAG
65 TGAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAA
*
4320571 AGGTGAGTTGAGCCTCGGCTCACATGCTGAGGT
130 AGGTGAGTTGAGCCTCGGC-CACACGCTGAGGT
* * *
4320604 CTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 CTTTTCAATTTCTGTTCTTCAATTTATATT-GTAAAAAAATCAACTCATATTGCGAAAGGTGAGT
* *
4320669 TGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCG
65 TGAGCCTCAGGACACGCTGAGGTA-ATTTAAATTTCTGTTTGTC-AAAAATCAACTCATATTGCG
*
4320734 AAAGGTGAGTTGAGCCTCGG-GACACGCTGAGGT
128 AAAGGTGAGTTGAGCCTCGGCCACACGCTGAGGT
**
4320767 AATTTCAATTTCTGTT
1 CTTTTCAATTTCTGTT
4320783 TGTCAAAAAT
Statistics
Matches: 158, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
162 13 0.08
163 92 0.58
164 16 0.10
165 37 0.23
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (161 bp):
CTTTTCAATTTCTGTTCTTCAATTTATATTGTAAAAAAATCAACTCATATTGCGAAAGGTGAGTT
GAGCCTCAGGACACGCTGAGGTAATTTAAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAA
GGTGAGTTGAGCCTCGGCCACACGCTGAGGT
Found at i:4320890 original size:17 final size:17
Alignment explanation
Indices: 4320857--4320891 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4320847 TAATTTCTGC
* *
4320857 TTTTCAATTTCTGTTTT
1 TTTTCAATTTATATTTT
4320874 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
4320891 T
1 T
4320892 CAAAATCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:4320966 original size:106 final size:106
Alignment explanation
Indices: 4320769--4320966 Score: 238
Period size: 106 Copynumber: 1.9 Consensus size: 106
4320759 GCTGAGGTAA
* * * *
4320769 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTGGAGTCTCGGCTCACAT
1 TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCGGCTCACAT
* * ** *
4320834 GCTGAGGTCTTTTTAATTTCTGCTTTTCAATTTCTGTTTTT
66 GCTGAGGTATTTTCAAAATCTACTTTTCAATTTCTGTTTTT
* * * * *
4320875 TTTCAATTTATATTTTTC-AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTTGGGTTCACA
1 TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCC-TCGGCTCACA
4320939 TG-TCGAGGTATTTTCAAAATCTACTTTT
65 TGCT-GAGGTATTTTCAAAATCTACTTTT
4320967 GCGAGAAGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
105 32 0.42
106 44 0.58
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.43
Consensus pattern (106 bp):
TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCGGCTCACAT
GCTGAGGTATTTTCAAAATCTACTTTTCAATTTCTGTTTTT
Found at i:4321063 original size:77 final size:76
Alignment explanation
Indices: 4320965--4321215 Score: 346
Period size: 77 Copynumber: 3.3 Consensus size: 76
4320955 AAATCTACTT
*
4320965 TTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAG
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAA-
4321030 AATCAACTCATA
65 AATCAACTCATA
*
4321042 TTGTGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTC-AAAA
4321107 AATCAACTCATA
65 AATCAACTCATA
** ** * * * *
4321119 TTGCGAGAGGTGAGTTGAGCCTCAGGACAC--ACTGAGGTATTTTTAAATTTCTGTTTTTC-AAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTA-TTTTCAATTTCTGCTTTTCAAAA
*
4321181 AATCAACTCATG
65 AATCAACTCATA
*
4321193 TTGCGAGATGTGAGTTGAGCCTT
1 TTGCGAGAGGTGAGTTGAGCCTT
4321216 GGGTTCACAT
Statistics
Matches: 158, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
74 35 0.22
75 7 0.04
76 17 0.11
77 95 0.60
78 4 0.03
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (76 bp):
TTGCGAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
ATCAACTCATA
Found at i:4321962 original size:30 final size:30
Alignment explanation
Indices: 4321926--4322040 Score: 194
Period size: 30 Copynumber: 3.8 Consensus size: 30
4321916 ACTTTTCTCA
4321926 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
4321956 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4321986 ACTAGCCACACCTTTTCCACTACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
4322016 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
4322041 CTTGTACCTA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:4322004 original size:18 final size:17
Alignment explanation
Indices: 4321983--4322035 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 17
4321973 CACCACCAAC
4321983 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACC-TT
4322001 TCCACTA-CCA-A-C--
1 TCCACTAGCCACACCTT
4322013 TCCACTAGCCACACCTT
1 TCCACTAGCCACACCTT
4322030 CTCCAC
1 -TCCAC
4322036 CACCACTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 1 0.03
15 2 0.07
16 1 0.03
17 3 0.10
18 12 0.41
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.23
Consensus pattern (17 bp):
TCCACTAGCCACACCTT
Found at i:4322567 original size:23 final size:23
Alignment explanation
Indices: 4322530--4322659 Score: 72
Period size: 23 Copynumber: 5.5 Consensus size: 23
4322520 CTTTTTTTGT
4322530 TATTAT-TATATTTCTTAATATTA
1 TATTATATATA-TTCTTAATATTA
* *
4322553 TATTATATATATTCTT-TTAATA
1 TATTATATATATTCTTAATATTA
**
4322575 TATTAGGTATATT-TTAA-ATTCTA
1 TATTATATATATTCTTAATA-T-TA
* *
4322598 TATTACGTATATATATATT-ATACTA
1 TATTA--TATATAT-TCTTAATATTA
* *
4322623 TTTTATGTATATATCTTTAATATTA
1 TATTATATATAT-TC-TTAATATTA
*
4322648 TATTATTTATAT
1 TATTATATATAT
4322660 ATATATTTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 26 0.32
24 6 0.07
25 26 0.32
26 2 0.02
27 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATATATATTCTTAATATTA
Found at i:4322635 original size:27 final size:26
Alignment explanation
Indices: 4322595--4322739 Score: 95
Period size: 25 Copynumber: 5.7 Consensus size: 26
4322585 ATTTTAAATT
*
4322595 CTATATTACGTATATATATA-TTATA
1 CTATATTATGTATATATATATTTATA
* * *
4322620 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTTATA
* * *
4322645 TTATATTATTTATATATATATTTTTTA
1 CTATATTATGTATATATATA-TTTATA
* * *
4322672 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTAT-GTATATATATAT-TTATA
* *
4322698 CTATATTATGTATGTAT-T-TTTAACA
1 CTATATTATGTATATATATATTT-ATA
*
4322723 CTATATTATGTACATAT
1 CTATATTATGTATATAT
4322740 TTTTAATATT
Statistics
Matches: 94, Mismatches: 18, Indels: 16
0.73 0.14 0.12
Matches are distributed among these distances:
23 2 0.02
24 2 0.02
25 52 0.55
26 16 0.17
27 22 0.23
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTTATA
Found at i:4322927 original size:16 final size:14
Alignment explanation
Indices: 4322908--4322941 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
4322898 TATTATTCTA
4322908 ATATTTTGATATTTT
1 ATATTTT-ATATTTT
4322923 GATATTTTATATTTT
1 -ATATTTTATATTTT
4322938 ATAT
1 ATAT
4322942 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTT
Found at i:4322936 original size:7 final size:8
Alignment explanation
Indices: 4322908--4322941 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
4322898 TATTATTCTA
4322908 ATATTTTG
1 ATATTTTG
4322916 ATATTTTG
1 ATATTTTG
4322924 ATATTTT-
1 ATATTTTG
4322931 ATATTTT-
1 ATATTTTG
4322938 ATAT
1 ATAT
4322942 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:4322943 original size:16 final size:15
Alignment explanation
Indices: 4322908--4322948 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
4322898 TATTATTCTA
4322908 ATATTTTGATATTTTG
1 ATATTTT-ATATTTTG
*
4322924 ATATTTTATATTTTAT
1 ATATTTTATATTTT-G
4322940 ATATTTTAT
1 ATATTTTAT
4322949 TATTCACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATATTTTATATTTTG
Found at i:4328201 original size:17 final size:17
Alignment explanation
Indices: 4328179--4328270 Score: 78
Period size: 17 Copynumber: 5.1 Consensus size: 17
4328169 GAAAAATGAG
4328179 AATTTTTAAAACACGAA
1 AATTTTTAAAACACGAA
*
4328196 AATTTTGAAAACACGAA
1 AATTTTTAAAACACGAA
*
4328213 AATTTTTGAAAC-CTGAA
1 AATTTTTAAAACAC-GAA
*
4328230 ATTTTTTTTAGAAAAACACGAA
1 A--ATTTTT---AAAACACGAA
*
4328252 AAATTTTAGAAACACGAA
1 AATTTTTA-AAACACGAA
4328270 A
1 A
4328271 TGTTTACAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
16 1 0.02
17 31 0.52
18 10 0.17
19 5 0.08
20 4 0.07
22 8 0.13
23 1 0.02
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (17 bp):
AATTTTTAAAACACGAA
Found at i:4330155 original size:27 final size:27
Alignment explanation
Indices: 4330117--4330174 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
4330107 CTTTGTGCAT
4330117 CTGAGGAGTGAGTAGGAACCTCCACGG
1 CTGAGGAGTGAGTAGGAACCTCCACGG
*
4330144 CTGAGGAGTGAGTAGGAACCTCCATGG
1 CTGAGGAGTGAGTAGGAACCTCCACGG
4330171 CTGA
1 CTGA
4330175 TAAAGACTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.36, T:0.17
Consensus pattern (27 bp):
CTGAGGAGTGAGTAGGAACCTCCACGG
Found at i:4332754 original size:13 final size:13
Alignment explanation
Indices: 4332736--4332821 Score: 62
Period size: 13 Copynumber: 7.2 Consensus size: 13
4332726 TCTTCACTCT
4332736 AACCACCCCACTA
1 AACCACCCCACTA
* *
4332749 AACCACTCCATTA
1 AACCACCCCACTA
*
4332762 AACCA-CTC-C--
1 AACCACCCCACTA
*
4332771 AACCACCCTACTA
1 AACCACCCCACTA
4332784 AACCA-CCC-C--
1 AACCACCCCACTA
4332793 AACCACCCCACTA
1 AACCACCCCACTA
* *
4332806 AACCACTCTACTA
1 AACCACCCCACTA
4332819 AAC
1 AAC
4332822 TATCATAATC
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
9 10 0.18
10 4 0.07
11 3 0.05
12 3 0.05
13 35 0.64
ACGTcount: A:0.38, C:0.49, G:0.00, T:0.13
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:4332774 original size:22 final size:21
Alignment explanation
Indices: 4332749--4332813 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 21
4332739 CACCCCACTA
*
4332749 AACCACTCCATTAAACCACTCC
1 AACCAC-CCACTAAACCACTCC
*
4332771 AACCACCCTACTAAACCACCCC
1 AACCACCC-ACTAAACCACTCC
4332793 AACCACCCCACTAAACCACTC
1 AACCA-CCCACTAAACCACTC
4332814 TACTAAACTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.87
23 3 0.08
ACGTcount: A:0.37, C:0.51, G:0.00, T:0.12
Consensus pattern (21 bp):
AACCACCCACTAAACCACTCC
Found at i:4333242 original size:19 final size:18
Alignment explanation
Indices: 4333205--4333246 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
4333195 GGAGAGAGTG
*
4333205 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
4333223 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
4333242 TTATT
1 TTATT
4333247 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:4336278 original size:55 final size:53
Alignment explanation
Indices: 4336210--4336460 Score: 197
Period size: 55 Copynumber: 4.8 Consensus size: 53
4336200 CATTTGGGTT
4336210 CAAGGATACCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGCTAAGGCATGGC-ATTGGTAA-GTTTCTAAGG
* * * * *
4336265 CAAGGAAATCATGTAAGACCATG-TCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGCT-AAGGCATGGCATTGGTAAGTT--TCTAAGG
* * * *
4336320 CAAAGG-TCCCATGTAAGACCGTGCCAAGGCATGGCATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGCTAAGGCATGGCATTGGTAAGTTTC-TAAGG
* *
4336373 CAAGGATACCATGT---A--ATG-TCAAGACATGGCAATGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGCT-AAGGCATGGCATTGGTAAGTTTCTAAGG
* * *
4336418 -AAGGATACCACGTAAGACCATGAC-AAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATG-CTAAGGCATGGCATTGGTAAG
4336461 GTACCCATGT
Statistics
Matches: 158, Mismatches: 22, Indels: 38
0.72 0.10 0.17
Matches are distributed among these distances:
44 12 0.08
47 3 0.02
48 18 0.11
49 24 0.15
50 1 0.01
52 5 0.03
53 16 0.10
54 9 0.06
55 66 0.42
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGCTAAGGCATGGCATTGGTAAGTTTCTAAGG
Found at i:4336995 original size:55 final size:53
Alignment explanation
Indices: 4336895--4337136 Score: 186
Period size: 55 Copynumber: 4.6 Consensus size: 53
4336885 CATGCTAAGG
* * *
4336895 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTT-TCTAAGGCAAGGAAAT
1 CATGTAAGACCATGC-AAGGCATGGC-ATTGGTAA-GTTCTATAAGGCAAGGATAC
* * *
4336950 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTT-CTATAAGGC-AAGGATAC
* *
4337005 CATGTAAGACCGTGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTTCTATAAGGCAAGGATAC
* * *
4337058 CATGT---A--ATGTCAAGACATGGCAATGGTAAGTT-T-CAA---AAGGATAC
1 CATGTAAGACCATG-CAAGGCATGGCATTGGTAAGTTCTATAAGGCAAGGATAC
* * *
4337102 CACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CATGTAAGACCATG-CAAGGCATGGCATTGGTAAG
4337137 GTACCCATGT
Statistics
Matches: 155, Mismatches: 21, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
44 12 0.08
47 3 0.02
48 21 0.14
49 22 0.14
50 1 0.01
52 4 0.03
53 17 0.11
54 8 0.05
55 62 0.40
56 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGCAAGGCATGGCATTGGTAAGTTCTATAAGGCAAGGATAC
Found at i:4337089 original size:103 final size:107
Alignment explanation
Indices: 4336895--4337089 Score: 256
Period size: 103 Copynumber: 1.8 Consensus size: 107
4336885 CATGCTAAGG
* *
4336895 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGT-A-A-
*
4336960 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
63 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
* * *
4337005 CATGTAAGACCGTGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGT-A-A
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAACA
*
4337065 TGTCAAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
4337090 TCAAAAGGAT
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
103 24 0.31
105 1 0.01
107 3 0.04
108 18 0.23
109 7 0.09
110 24 0.31
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (107 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAACAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
Found at i:4337511 original size:676 final size:676
Alignment explanation
Indices: 4336219--4337565 Score: 2685
Period size: 676 Copynumber: 2.0 Consensus size: 676
4336209 TCAAGGATAC
4336219 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
4336284 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCGTGCCAAGG
66 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCGTGCCAAGG
4336349 CATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAATGTCAAGACATGGCAATGGTAAGTT
131 CATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAATGTCAAGACATGGCAATGGTAAGTT
4336414 TCAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGTACCCATGTATCCTTAG
196 TCAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGTACCCATGTATCCTTAG
4336479 TATTCCAAGTGGTTCAACGGGAAAATTTAAAGAGAATATCAAGGTAAGGTAAGTAAAATGTATTA
261 TATTCCAAGTGGTTCAACGGGAAAATTTAAAGAGAATATCAAGGTAAGGTAAGTAAAATGTATTA
4336544 ATAAATATGTATTCTTACCATGATGGATAAAATGATGTATTAATTTTATGAACAATGACCATGAA
326 ATAAATATGTATTCTTACCATGATGGATAAAATGATGTATTAATTTTATGAACAATGACCATGAA
4336609 TGAGTAACTTAGCCTTGACAGATTTGAGTTACTGCAGTAGTGTAACTTTAAAAATACACTAAAAA
391 TGAGTAACTTAGCCTTGACAGATTTGAGTTACTGCAGTAGTGTAACTTTAAAAATACACTAAAAA
4336674 TAGTATAAAATGAGTTAGAGGCAGAATAAAATATGAGATTAAAGCTTAATGAGTCTATTTTCACA
456 TAGTATAAAATGAGTTAGAGGCAGAATAAAATATGAGATTAAAGCTTAATGAGTCTATTTTCACA
4336739 TGAAAGAAATAGAGGAAGAAAAAGAATTCTATATTGTGTGATATTTAAATTCTTATGAAACAGGG
521 TGAAAGAAATAGAGGAAGAAAAAGAATTCTATATTGTGTGATATTTAAATTCTTATGAAACAGGG
*
4336804 TTTGAATGAATTTGAGATCCCCTGTTCTGATTTTATAAATTCACCGTAAATTTTACAAAAATTAT
586 TTTGAATGAATTTGAGATCCCCTGGTCTGATTTTATAAATTCACCGTAAATTTTACAAAAATTAT
4336869 TAAGATTCATACCTTACATGCTAAGG
651 TAAGATTCATACCTTACATGCTAAGG
4336895 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
4336960 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCGTGCCAAGG
66 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCGTGCCAAGG
4337025 CATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAATGTCAAGACATGGCAATGGTAAGTT
131 CATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAATGTCAAGACATGGCAATGGTAAGTT
4337090 TCAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGTACCCATGTATCCTTAG
196 TCAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGTACCCATGTATCCTTAG
4337155 TATTCCAAGTGGTTCAACGGGAAAATTTAAAGAGAATATCAAGGTAAGGTAAGTAAAATGTATTA
261 TATTCCAAGTGGTTCAACGGGAAAATTTAAAGAGAATATCAAGGTAAGGTAAGTAAAATGTATTA
4337220 ATAAATATGTATTCTTACCATGATGGATAAAATGATGTATTAATTTTATGAACAATGACCATGAA
326 ATAAATATGTATTCTTACCATGATGGATAAAATGATGTATTAATTTTATGAACAATGACCATGAA
4337285 TGAGTAACTTAGCCTTGACAGATTTGAGTTACTGCAGTAGTGTAACTTTAAAAATACACTAAAAA
391 TGAGTAACTTAGCCTTGACAGATTTGAGTTACTGCAGTAGTGTAACTTTAAAAATACACTAAAAA
4337350 TAGTATAAAATGAGTTAGAGGCAGAATAAAATATGAGATTAAAGCTTAATGAGTCTATTTTCACA
456 TAGTATAAAATGAGTTAGAGGCAGAATAAAATATGAGATTAAAGCTTAATGAGTCTATTTTCACA
4337415 TGAAAGAAATAGAGGAAGAAAAAGAATTCTATATTGTGTGATATTTAAATTCTTATGAAACAGGG
521 TGAAAGAAATAGAGGAAGAAAAAGAATTCTATATTGTGTGATATTTAAATTCTTATGAAACAGGG
4337480 TTTGAATGAATTTGAGATCCCCTGGTCTGATTTTATAAATTCACCGTAAATTTTACAAAAATTAT
586 TTTGAATGAATTTGAGATCCCCTGGTCTGATTTTATAAATTCACCGTAAATTTTACAAAAATTAT
4337545 TAAGATTCATACCTTACATGC
651 TAAGATTCATACCTTACATGC
4337566 ATGGATTCCT
Statistics
Matches: 670, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
676 670 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (676 bp):
CATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATGTAAGACCGTGCCAAGG
CATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAATGTCAAGACATGGCAATGGTAAGTT
TCAAAAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGTACCCATGTATCCTTAG
TATTCCAAGTGGTTCAACGGGAAAATTTAAAGAGAATATCAAGGTAAGGTAAGTAAAATGTATTA
ATAAATATGTATTCTTACCATGATGGATAAAATGATGTATTAATTTTATGAACAATGACCATGAA
TGAGTAACTTAGCCTTGACAGATTTGAGTTACTGCAGTAGTGTAACTTTAAAAATACACTAAAAA
TAGTATAAAATGAGTTAGAGGCAGAATAAAATATGAGATTAAAGCTTAATGAGTCTATTTTCACA
TGAAAGAAATAGAGGAAGAAAAAGAATTCTATATTGTGTGATATTTAAATTCTTATGAAACAGGG
TTTGAATGAATTTGAGATCCCCTGGTCTGATTTTATAAATTCACCGTAAATTTTACAAAAATTAT
TAAGATTCATACCTTACATGCTAAGG
Found at i:4338623 original size:19 final size:19
Alignment explanation
Indices: 4338599--4338648 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
4338589 TGGGTTCAGG
4338599 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
*
4338618 ACACGGGCGTGTTCCTAGC
1 ACACGGGCGTGTCCCTAGC
4338637 ACACGGGCGTGT
1 ACACGGGCGTGT
4338649 GCTCTATACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTAGC
Found at i:4339966 original size:11 final size:13
Alignment explanation
Indices: 4339941--4339972 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
4339931 TAGTTTATTA
4339941 ATATTTTAAATTG
1 ATATTTTAAATTG
4339954 AT-TTTTAAA-TG
1 ATATTTTAAATTG
4339965 ATATTTTA
1 ATATTTTA
4339973 TTATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 12 0.67
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAAATTG
Found at i:4344973 original size:19 final size:20
Alignment explanation
Indices: 4344946--4344985 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
4344936 TATAAAAATT
*
4344946 TTAAAAATTTTAAA-ATATA
1 TTAAAAATTCTAAATATATA
*
4344965 TTAATAATTCTAAATATATA
1 TTAAAAATTCTAAATATATA
4344985 T
1 T
4344986 ATATATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAATTCTAAATATATA
Found at i:4345300 original size:87 final size:89
Alignment explanation
Indices: 4345195--4345392 Score: 219
Period size: 91 Copynumber: 2.2 Consensus size: 89
4345185 TAAAATTTTT
* *
4345195 AAATAATTA-TTAATATTTTTGTATATATTTT-T-TTTATTTTTAATAGTTTTGCA-CT-TTT-T
1 AAAT-ATTATTTAATATTTTT-T-TATATTTTCTATTT-TTTTTAATAGTTTTACACCTATTTAA
* * *
4345254 TGGAATGGATAAATGTGTATCCAGATTC
62 TGAAATGAACAAATGTGTATCCAGATTC
*
4345282 AAATATTATTTAATATTTTTTTATATTTTCTATTTTTTTTTATAGTTTTACACCTATTTAGAATG
1 AAATATTATTTAATATTTTTTTATATTTTCTATTTTTTTTAATAGTTTTACACCTATTT--AATG
* *
4345347 AAATGAACAAATGTGTATCTAGATTT
64 AAATGAACAAATGTGTATCCAGATTC
*
4345373 AAATGTTATTTAATATTTTT
1 AAATATTATTTAATATTTTT
4345393 AGATGTTTTC
Statistics
Matches: 94, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
85 8 0.09
86 21 0.22
87 20 0.21
88 3 0.03
91 42 0.45
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.54
Consensus pattern (89 bp):
AAATATTATTTAATATTTTTTTATATTTTCTATTTTTTTTAATAGTTTTACACCTATTTAATGAA
ATGAACAAATGTGTATCCAGATTC
Found at i:4347884 original size:19 final size:19
Alignment explanation
Indices: 4347852--4347889 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
4347842 TTGAGTTCAA
*
4347852 AAAAAATATTAATTGTTTGG
1 AAAAAATATGAATT-TTTGG
4347872 AAAAAA-ATGAATTTTTGG
1 AAAAAATATGAATTTTTGG
4347890 TAATTTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 6 0.35
20 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (19 bp):
AAAAAATATGAATTTTTGG
Found at i:4351152 original size:21 final size:23
Alignment explanation
Indices: 4351123--4351177 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
4351113 GTAAAAATGT
*
4351123 ATAAAATAAT-TAA-ATATTAAA
1 ATAATATAATATAATATATTAAA
*
4351144 ATAATATAATATAATATTTTAAA
1 ATAATATAATATAATATATTAAA
*
4351167 AAAAT-TAATAT
1 ATAATATAATAT
4351178 GGGCGGGCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 9 0.31
23 11 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAATATAATATAATATATTAAA
Found at i:4353348 original size:24 final size:23
Alignment explanation
Indices: 4353321--4353365 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
4353311 TAAATTTAAA
4353321 TTAGGGTATTAGGTTTTTAATTGT
1 TTAGGGT-TTAGGTTTTTAATTGT
**
4353345 TTAGGGTTTATTTTTTTAATT
1 TTAGGGTTTAGGTTTTTAATT
4353366 ACTAAGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (23 bp):
TTAGGGTTTAGGTTTTTAATTGT
Found at i:4356250 original size:18 final size:18
Alignment explanation
Indices: 4356223--4356262 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
4356213 TGCAACTTCA
4356223 GGGA-GATAAGATTCACC
1 GGGATGATAAGATTCACC
4356240 GGGATGATAAGATTCACC
1 GGGATGATAAGATTCACC
4356258 GGGAT
1 GGGAT
4356263 AACTTCAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.20
Consensus pattern (18 bp):
GGGATGATAAGATTCACC
Found at i:4356370 original size:43 final size:44
Alignment explanation
Indices: 4356305--4356400 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 44
4356295 GATAAGATTT
* * *
4356305 GATAAGATTTGTGGCTTCAATCTGCTCCACTACAACTTCAGTGA
1 GATAAGATTTGTGGCTTCAATCTACTCCACCACAACTTCAGGGA
* * *
4356349 GAT-AGATTTGTGGCTTTAATCTATTCCACCGCAACTTCAGGGA
1 GATAAGATTTGTGGCTTCAATCTACTCCACCACAACTTCAGGGA
4356392 GATAAGATT
1 GATAAGATT
4356401 CACCGCGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 37 0.82
44 8 0.18
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
GATAAGATTTGTGGCTTCAATCTACTCCACCACAACTTCAGGGA
Found at i:4356438 original size:50 final size:50
Alignment explanation
Indices: 4356363--4356500 Score: 195
Period size: 50 Copynumber: 2.8 Consensus size: 50
4356353 GATTTGTGGC
** * *
4356363 TTTAATCTATTCCACCGCAACTTCAGGGAGATAAGATTCACCGCGATAAT
1 TTTAATCTGCTCCACCGCAACTTCAGGGAGATAAGATTCACCACAATAAT
* *
4356413 TTTAATCTGCTCCACCGCAACTTCAGGGAGATAAGATTCATCACAATGAT
1 TTTAATCTGCTCCACCGCAACTTCAGGGAGATAAGATTCACCACAATAAT
* * *
4356463 TTAAATTTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTTAATCTGCTCCACCGCAACTTCAGGGAGATAAGATT
4356501 AGTGGCTTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (50 bp):
TTTAATCTGCTCCACCGCAACTTCAGGGAGATAAGATTCACCACAATAAT
Found at i:4365368 original size:18 final size:18
Alignment explanation
Indices: 4365342--4365406 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 18
4365332 CTAGGGTTTC
*
4365342 TTAGTTTTTTTTTTTTGG
1 TTAGGTTTTTTTTTTTGG
*
4365360 TTAGGTTTTTCTTTTTT-C
1 TTAGGTTTTT-TTTTTTGG
* *
4365378 TT--CTTTTTTTTTTGGGG
1 TTAGGTTTTTTTTTT-TGG
4365395 TTAGGTTTTTTT
1 TTAGGTTTTTTT
4365407 GGGGGGCTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
15 5 0.14
16 5 0.14
17 2 0.06
18 11 0.31
19 13 0.36
ACGTcount: A:0.05, C:0.05, G:0.17, T:0.74
Consensus pattern (18 bp):
TTAGGTTTTTTTTTTTGG
Found at i:4365759 original size:16 final size:15
Alignment explanation
Indices: 4365732--4365774 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
4365722 TATTATTAGT
* *
4365732 ATAAACATAAAACAT
1 ATAAATATAAAACAA
*
4365747 ATATATTATAAAACAA
1 ATA-AATATAAAACAA
4365763 ATAAATATAAAA
1 ATAAATATAAAA
4365775 ATAAAACAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAATATAAAACAA
Found at i:4365844 original size:16 final size:16
Alignment explanation
Indices: 4365823--4365860 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
4365813 GGCCGGAAAT
*
4365823 CCCTCTCTTCTTTCTC
1 CCCTCTCTCCTTTCTC
4365839 CCCTCTCTCCTTTCTC
1 CCCTCTCTCCTTTCTC
4365855 CCCTCT
1 CCCTCT
4365861 TTGTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (16 bp):
CCCTCTCTCCTTTCTC
Found at i:4366486 original size:21 final size:21
Alignment explanation
Indices: 4366445--4366494 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 21
4366435 ACTTATGTAT
*
4366445 TATATTATATATGTAATTTTTTA
1 TATATTATATATGT-A-GTTTTA
4366468 TATATTATATATGT-GTTTTA
1 TATATTATATATGTAGTTTTA
4366488 -ATATTAT
1 TATATTAT
4366495 GTTATATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 7 0.27
20 5 0.19
23 14 0.54
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (21 bp):
TATATTATATATGTAGTTTTA
Found at i:4367806 original size:35 final size:34
Alignment explanation
Indices: 4367756--4367821 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
4367746 CTATGTGTAT
*
4367756 TATATGTATTATTATTT-TTATTATATGTATTACG
1 TATATGTATTATTATTTATTATT-CATGTATTACG
*
4367790 TATATGTATTTTTTATTTATTATTCATGTATT
1 TATATGTA-TTATTATTTATTATTCATGTATT
4367822 TTATTATACA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 8 0.29
35 15 0.54
36 5 0.18
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (34 bp):
TATATGTATTATTATTTATTATTCATGTATTACG
Found at i:4367826 original size:16 final size:16
Alignment explanation
Indices: 4367805--4367836 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4367795 GTATTTTTTA
*
4367805 TTTATTATTCATGTAT
1 TTTATTATACATGTAT
4367821 TTTATTATACATGTAT
1 TTTATTATACATGTAT
4367837 ATATCTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTATTATACATGTAT
Found at i:4370411 original size:136 final size:132
Alignment explanation
Indices: 4370078--4370567 Score: 434
Period size: 136 Copynumber: 3.7 Consensus size: 132
4370068 TAGAAAATAC
* * * * *
4370078 GAGTGAAATTCCGAAA-GAGATATTCGATTATTTTGAACAAATGGGAGATTGCAACCCAGCACGA
1 GAGTGAAATACC-AAAGGA-ATCTTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGA
* ** * *
4370142 TAGGGCACT-ATTCCCCGAATTGCCGAACATCGAACATT-TTTTCTGTTTTAAAGAG-TTTTTAG
64 TAGGGCA-TGATT-CCCGAATTGCCAAACATCGAACATTGCCTT-TGTTTTAAAGGGTTTTTTAA
* *
4370204 AATACGT
126 AAAACAT
* * * ** * *
4370211 GAGTGAAATTCCGAAGGGATCTTCGATCGTTTTGAACAAATGAAAAAGCGCAACCCAGCACGATA
1 GAGTGAAATACCAAAGGAATCTTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATA
*
4370276 GGGCATGATTCTCGAATTGCCAAACATCGAACATTGCCTTTGTTTTAAAGGGTTTTCTTGAAAAA
66 GGGCATGATTCCCGAATTGCCAAACATCGAACATTGCCTTTGTTTTAAAGGGTTTT-TT---AAA
4370341 AAACAT
127 AAACAT
* * * *
4370347 GAGTGAAA-ACCTAAAGGAATGTTCGATTATTTTGAAGAAACGAGAAATCACAACCCAGCACGAT
1 GAGTGAAATACC-AAAGGAATCTTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGAT
* * * * * *
4370411 AGGGCATGATTCCCGAATTGTCAAACACCGAATATTGCCTTTGTTTTAAA-GGATTTTTAGAAGA
65 AGGGCATGATTCCCGAATTGCCAAACATCGAACATTGCCTTTGTTTTAAAGGGTTTTTTAAAAAA
*
4370475 CCT
130 CAT
** * * * * ** * * * * *
4370478 GAGTGAAATTTCGAAGGGATATTTGATTATTTTGGGCAAACGAGAAATTGTAACCCAACACGTTA
1 GAGTGAAATACCAAAGGAATCTTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATA
*
4370543 GGGCACGATTCCGCGAATTGCCAAA
66 GGGCATGATTCC-CGAATTGCCAAA
4370568 TATCAAATCT
Statistics
Matches: 293, Mismatches: 53, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
131 101 0.34
132 66 0.23
133 15 0.05
134 2 0.01
135 7 0.02
136 102 0.35
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (132 bp):
GAGTGAAATACCAAAGGAATCTTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCACGATA
GGGCATGATTCCCGAATTGCCAAACATCGAACATTGCCTTTGTTTTAAAGGGTTTTTTAAAAAAC
AT
Found at i:4372594 original size:55 final size:54
Alignment explanation
Indices: 4372501--4372605 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 54
4372491 CCTTTAAGCT
*
4372501 CCCTTTTTCCTTTTTTTTTTTTAAAAGAAGAACACTTAATCTGCTCTGTTCTCC
1 CCCTTTTTCCTTTTTTTTTTTAAAAAGAAGAACACTTAATCTGCTCTGTTCTCC
* *
4372555 CCCTTTTT-CTTTTTTTTTTTAAAAAAAGAAGAACCCTTAATTTGCTCTGTT
1 CCCTTTTTCCTTTTTTTTTTT--AAAAAGAAGAACACTTAATCTGCTCTGTT
4372606 AGGGTCAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
53 12 0.26
54 8 0.17
55 26 0.57
ACGTcount: A:0.23, C:0.21, G:0.08, T:0.49
Consensus pattern (54 bp):
CCCTTTTTCCTTTTTTTTTTTAAAAAGAAGAACACTTAATCTGCTCTGTTCTCC
Found at i:4373646 original size:44 final size:44
Alignment explanation
Indices: 4373598--4373957 Score: 571
Period size: 44 Copynumber: 8.2 Consensus size: 44
4373588 CTCAGGAACA
4373598 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
*
4373642 CCAAATCTGCTA-CTTTCGATCTGCTCTCCGCCAATACAGAGATG
1 CCAAATCTGCTATC-TTCGATCTGCTCTCCGCCAATACAGAGACG
* * * *
4373686 CCAAATCTGCTATCTTCGATCTGCTCTCTGCCACTACAGATATG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
* * *
4373730 CCAAATCTGTTATCTTTGATCTGCTCTCCGCCACTACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
*
4373774 CCAAATATGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
*
4373818 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
**
4373862 TTAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
1 CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
*
4373906 CCAAATCTGCTA-CTTTCTATCTGCTCTCCGCCAATACAGAGACG
1 CCAAATCTGCTATC-TTCGATCTGCTCTCCGCCAATACAGAGACG
4373950 CCAAATCT
1 CCAAATCT
4373958 ATCTGTTCTT
Statistics
Matches: 292, Mismatches: 21, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
43 2 0.01
44 289 0.99
45 1 0.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (44 bp):
CCAAATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACG
Found at i:4374512 original size:45 final size:44
Alignment explanation
Indices: 4374449--4374653 Score: 155
Period size: 45 Copynumber: 4.6 Consensus size: 44
4374439 AGGTTGGTGG
*
4374449 CTTAAATCTGCTTCACTGCAACTTCAGGAAGCTCAGATTCGCCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCT-AGATTCGCCGT
* * * ***
4374494 CTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGA-TCTGAAAT
1 CTTAGATCTGCTTCACTGCAACTTCA-GGAAGCTAGATTC-GCCGT
* * * * * * * * ** *
4374539 TTTAG-CCTACTCCACTACAACTTTAGGGAGCTAGGTT-GGTGG
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTAGATTCGCCGT
* *
4374581 CTTAAATCTGCTTCACTGCAACTTCAGGAAGCTTAGATTCACCGT
1 CTTAGATCTGCTTCACTGCAACTTCAGGAAGC-TAGATTCGCCGT
* *
4374626 CTTCGATCTGTTTCACTGCAACTTCAGG
1 CTTAGATCTGCTTCACTGCAACTTCAGG
4374654 GAAACAAGAT
Statistics
Matches: 116, Mismatches: 38, Indels: 12
0.70 0.23 0.07
Matches are distributed among these distances:
42 4 0.03
43 26 0.22
44 23 0.20
45 58 0.50
46 5 0.04
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTAGATCTGCTTCACTGCAACTTCAGGAAGCTAGATTCGCCGT
Found at i:4374553 original size:132 final size:129
Alignment explanation
Indices: 4374153--4374678 Score: 618
Period size: 132 Copynumber: 4.0 Consensus size: 129
4374143 TACAAACTTC
* * * * *
4374153 AGCCCACTTCACTACAACTTTAGGGAGCTAGGACTTGCTTAAATCTGCTTCGCTGCATCTTCAGG
1 AGCCTACTCCACTACAACTTTAGGAAGCTAGG-CTTGCTTAAATCTGCTTCACTGCAACTTCAGG
* * * ** * *
4374218 AAGCCAAGATTTATCGTCTTTGAT-TTTTCTCACTGCAACTTCAGGGAGACGAGATCT-ACAATC
65 AAGCCAAGATTCACCGTCTTCGATCTGCT-TCACTGCAACTTCAGGGAAACAAGATCTGA-AAT-
* *
4374281 CTC
127 TTT
* * * *
4374284 AGCCTACTCCACTACAACTTTA-GAGAGCCAAGACTTGCTTAAATCTGCTTTACTGCAACATCAG
1 AGCCTACTCCACTACAACTTTAGGA-AG-CTAGGCTTGCTTAAATCTGCTTCACTGCAACTTCAG
* ** *
4374348 GAAGCCTAGATT--CCGTCTTCGATCTGCCCCACTGTAA--TCAGGGAAACAAGATCTGAAATTT
64 GAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTGAAATTT
4374409 T
129 T
*
4374410 AGCCTACTCCACTACAACTTTAGGAAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGAAGCTAGGCT--T-GCTTAAATCTGCTTCACTGCAACTTCA
*
4374475 GGAAGCTC-AGATTCGCCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTGAAAT
63 GGAAGC-CAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTGAAAT
4374539 TTT
127 TTT
* *
4374542 AGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCTGCTTCACTGCAACTTCA
1 AGCCTACTCCACTACAACTTTAGGAAGCTAGGCT--T-GCTTAAATCTGCTTCACTGCAACTTCA
** *
4374607 GGAAGCTTAGATTCACCGTCTTCGATCTGTTTCACTGCAACTTCAGGGAAACAAGATCTGAAATT
63 GGAAGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTGAAATT
4374672 TT
128 TT
4374674 AGCCT
1 AGCCT
4374679 CATAGGCCCA
Statistics
Matches: 348, Mismatches: 33, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
125 4 0.01
126 25 0.07
127 21 0.06
128 37 0.11
129 17 0.05
130 24 0.07
131 60 0.17
132 160 0.46
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (129 bp):
AGCCTACTCCACTACAACTTTAGGAAGCTAGGCTTGCTTAAATCTGCTTCACTGCAACTTCAGGA
AGCCAAGATTCACCGTCTTCGATCTGCTTCACTGCAACTTCAGGGAAACAAGATCTGAAATTTT
Found at i:4379408 original size:22 final size:22
Alignment explanation
Indices: 4379356--4379458 Score: 107
Period size: 22 Copynumber: 4.7 Consensus size: 22
4379346 GTGATGCTGT
* * * *
4379356 TTTTTGTGCTGTTTTGTTGTTG
1 TTTTGGTGCTGTTTTGATGGTA
*
4379378 TTTGGGTGCTGTTTTGATGGTA
1 TTTTGGTGCTGTTTTGATGGTA
* *
4379400 TTTTTGTGCTGTTTTGATGGCA
1 TTTTGGTGCTGTTTTGATGGTA
* * *
4379422 TTTTGGTGTTGTTTTGATGCTG
1 TTTTGGTGCTGTTTTGATGGTA
*
4379444 TTTTGGTGCTATTTT
1 TTTTGGTGCTGTTTT
4379459 ACTGCTACTT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 66 1.00
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.59
Consensus pattern (22 bp):
TTTTGGTGCTGTTTTGATGGTA
Found at i:4379435 original size:44 final size:43
Alignment explanation
Indices: 4379332--4379458 Score: 119
Period size: 44 Copynumber: 2.8 Consensus size: 43
4379322 TTTTGCAGGT
* * ***
4379332 TTTTGGTGTTGTTGGTGATGCTGTTTTTTGTGCTGTTTTGTTGTTG
1 TTTTGGTGTTGTT-TTGATG--GTTTTTTGTGCTGTTTTGATGGCA
* *
4379378 TTTGGGTGCTGTTTTGATGGTATTTTTGTGCTGTTTTGATGGCA
1 TTTTGGTGTTGTTTTGATGGT-TTTTTGTGCTGTTTTGATGGCA
* * *
4379422 TTTTGGTGTTGTTTTGATGCTGTTTTGGTGCTATTTT
1 TTTTGGTGTTGTTTTGATGGT-TTTTTGTGCTGTTTT
4379459 ACTGCTACTT
Statistics
Matches: 67, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.03
44 49 0.73
45 5 0.07
46 11 0.16
ACGTcount: A:0.06, C:0.06, G:0.31, T:0.58
Consensus pattern (43 bp):
TTTTGGTGTTGTTTTGATGGTTTTTTGTGCTGTTTTGATGGCA
Found at i:4379453 original size:11 final size:11
Alignment explanation
Indices: 4379350--4379458 Score: 76
Period size: 11 Copynumber: 9.8 Consensus size: 11
4379340 TTGTTGGTGA
*
4379350 TGCTGTTTTTTG
1 TGCTG-TTTTGG
*
4379362 TGCTGTTTTGT
1 TGCTGTTTTGG
* *
4379373 TGTTGTTTGGG
1 TGCTGTTTTGG
*
4379384 TGCTGTTTTGA
1 TGCTGTTTTGG
* * *
4379395 TGGTATTTTTG
1 TGCTGTTTTGG
*
4379406 TGCTGTTTTGA
1 TGCTGTTTTGG
*
4379417 TGGC-ATTTTGG
1 T-GCTGTTTTGG
* *
4379428 TGTTGTTTTGA
1 TGCTGTTTTGG
4379439 TGCTGTTTTGG
1 TGCTGTTTTGG
*
4379450 TGCTATTTT
1 TGCTGTTTT
4379459 ACTGCTACTT
Statistics
Matches: 71, Mismatches: 24, Indels: 5
0.71 0.24 0.05
Matches are distributed among these distances:
10 1 0.01
11 63 0.89
12 7 0.10
ACGTcount: A:0.06, C:0.06, G:0.29, T:0.59
Consensus pattern (11 bp):
TGCTGTTTTGG
Found at i:4383674 original size:16 final size:16
Alignment explanation
Indices: 4383650--4383689 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
4383640 GAGAAAGTTT
*
4383650 CAGCTAAAGCTTAATC
1 CAGCCAAAGCTTAATC
4383666 CAGCCAAAGCTTAATC
1 CAGCCAAAGCTTAATC
4383682 CAGCCAAA
1 CAGCCAAA
4383690 CGTACGTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17
Consensus pattern (16 bp):
CAGCCAAAGCTTAATC
Found at i:4384498 original size:36 final size:36
Alignment explanation
Indices: 4384451--4384522 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
4384441 CAGAACAAGA
4384451 ATGTGAGTCATCAAAAGAAAAGTCATGGAAGATGAG
1 ATGTGAGTCATCAAAAGAAAAGTCATGGAAGATGAG
4384487 ATGTGAGTCATCAAAAGAAAAGTCATGGAAGATGAG
1 ATGTGAGTCATCAAAAGAAAAGTCATGGAAGATGAG
4384523 CTTTGATGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.08, G:0.28, T:0.19
Consensus pattern (36 bp):
ATGTGAGTCATCAAAAGAAAAGTCATGGAAGATGAG
Found at i:4387285 original size:16 final size:16
Alignment explanation
Indices: 4387252--4387285 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4387242 CGCTGAGGTA
*
4387252 TTTTCAATTTCTGATT
1 TTTTCAATTTATGATT
4387268 TTTTCAATTTAT-ATT
1 TTTTCAATTTATGATT
4387283 TTT
1 TTT
4387286 AAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTCAATTTATGATT
Found at i:4387362 original size:16 final size:16
Alignment explanation
Indices: 4387341--4387374 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4387331 CGCTGAGGTA
* *
4387341 TTTTCAGTTTCTATTT
1 TTTTCAATTTATATTT
4387357 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
4387373 TT
1 TT
4387375 AAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:4387463 original size:17 final size:17
Alignment explanation
Indices: 4387430--4387464 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4387420 CGCTGAGGTA
* *
4387430 TTTTCAATTTCTGTTTT
1 TTTTCAATTTATATTTT
4387447 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
4387464 T
1 T
4387465 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:4387503 original size:90 final size:90
Alignment explanation
Indices: 4387185--4387537 Score: 570
Period size: 89 Copynumber: 3.9 Consensus size: 90
4387175 AGTTGAGCCT
4387185 TTTA-ATTTTTATCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 TTTATATTTTTA--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
*
4387249 GTATTTTCAATTTCTG-ATTTTTTCAA
64 GTATTTTCAATTTCTGTTTTTTTTCAA
*
4387275 TTTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGCTGAGGT
1 TTTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
* *
4387340 ATTTTCAGTTTCT-ATTTTTTTCAA
66 ATTTTCAATTTCTGTTTTTTTTCAA
4387364 TTTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
1 TTTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
4387429 ATTTTCAATTTCTGTTTTTTTTCAA
66 ATTTTCAATTTCTGTTTTTTTTCAA
* * * * *
4387454 TTTATATTTTTCAAAAATCAACTCATATTGTGATAGAG-GAGTTGGGCCTCGGGGCACGCTGAGG
1 TTTATATTTTTAAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCAGGGCACGCTGAGG
4387518 TATTTTCAATTTCTGTTTTT
65 TATTTTCAATTTCTGTTTTT
4387538 CAAAAATCAA
Statistics
Matches: 248, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
89 149 0.60
90 91 0.37
91 8 0.03
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (90 bp):
TTTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
ATTTTCAATTTCTGTTTTTTTTCAA
Found at i:4387569 original size:73 final size:73
Alignment explanation
Indices: 4387447--4387760 Score: 263
Period size: 73 Copynumber: 4.1 Consensus size: 73
4387437 TTTCTGTTTT
* * * * *
4387447 TTTTCAATTTATATTTTTCAAAAATCAACTCATATTGTGATAGAG-GAGTTGGGCCTCGGGGCAC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCGGGGCAC
*
4387511 GCTGAGGTA
65 ACTGAGGTA
*
4387520 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACA
4387585 CTGAGGTA
66 CTGAGGTA
*** * * * * **
4387593 TTTTCAAATTTCAT-TTTAAAAAAAATCAACTCATATTACGAGATGTGAGTTTAGCCTTGGCTCA
1 TTTTC-AATTTC-TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCA
** *
4387657 TGTGCTGAGCTA
64 --CACTGAGGTA
* * **
4387669 CTTTCAATTTCCGTCTTAATGTCTGTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTCAATTTCTGT-TT--T-TC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
4387734 CGGGGCACACTAAGGTA
57 CGGGGCACACTGAGGTA
*
4387751 TTCTCAATTT
1 TTTTCAATTT
4387761 ATGCATTTCA
Statistics
Matches: 188, Mismatches: 38, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
72 1 0.01
73 69 0.37
74 47 0.25
75 8 0.04
76 13 0.07
82 14 0.07
84 36 0.19
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACA
CTGAGGTA
Found at i:4388506 original size:24 final size:24
Alignment explanation
Indices: 4388479--4388528 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
4388469 AAAACCCACT
*
4388479 AACCCATACCCA-CTAACCTAAACC
1 AACCCA-ACCCACCTAAACTAAACC
* *
4388503 AACCTAACCCACCTAAACTAACCC
1 AACCCAACCCACCTAAACTAAACC
4388527 AA
1 AA
4388529 TAGAGGCCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.12
Consensus pattern (24 bp):
AACCCAACCCACCTAAACTAAACC
Found at i:4388821 original size:26 final size:28
Alignment explanation
Indices: 4388792--4388845 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
4388782 GTTCGGGGAT
4388792 TTCAA-AATCAAAAAATAA-AAAAAACA
1 TTCAACAATCAAAAAATAAGAAAAAACA
*
4388818 TTCAACAATCAAAAAATAAGAAACAACA
1 TTCAACAATCAAAAAATAAGAAAAAACA
4388846 ACCACCGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.20
27 13 0.52
28 7 0.28
ACGTcount: A:0.69, C:0.15, G:0.02, T:0.15
Consensus pattern (28 bp):
TTCAACAATCAAAAAATAAGAAAAAACA
Found at i:4390445 original size:16 final size:16
Alignment explanation
Indices: 4390426--4390457 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4390416 ATTTTATTTA
*
4390426 TTTATTATTCATGTAT
1 TTTATTATACATGTAT
4390442 TTTATTATACATGTAT
1 TTTATTATACATGTAT
4390458 ATATCTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTATTATACATGTAT
Found at i:4390471 original size:21 final size:22
Alignment explanation
Indices: 4390442--4390489 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
4390432 ATTCATGTAT
* *
4390442 TTTATTATACATGTA-TATATC
1 TTTAATATACATATAGTATATC
*
4390463 TTTAATATATATATAGGTATATC
1 TTTAATATACATATA-GTATATC
4390486 TTTA
1 TTTA
4390490 TATTAGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 12 0.55
23 10 0.45
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (22 bp):
TTTAATATACATATAGTATATC
Found at i:4393498 original size:15 final size:16
Alignment explanation
Indices: 4393471--4393501 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
4393461 ATTTTATTTT
4393471 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
4393487 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
4393502 TATTCTTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Done.