Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 150 of 320
Found at i:49404824 original size:16 final size:17
Alignment explanation
Indices: 49404787--49404823 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
49404777 AAAAGTACAG
49404787 AAAAAGAAAATACGAAA
1 AAAAAGAAAATACGAAA
49404804 AAAAAGAAAA-A-GAAA
1 AAAAAGAAAATACGAAA
49404819 AAAAA
1 AAAAA
49404824 AATTATGTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 1 0.05
17 10 0.50
ACGTcount: A:0.84, C:0.03, G:0.11, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAATACGAAA
Found at i:49405993 original size:96 final size:96
Alignment explanation
Indices: 49405824--49406011 Score: 268
Period size: 96 Copynumber: 2.0 Consensus size: 96
49405814 AAGGAGAAAC
* * * * * *
49405824 ACGATTGAGTTATCACATTTTGTGCAATATTGTTGGTGTAGTTCAAAAGGTCATAAGGGTTTCCA
1 ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
49405889 ATGCCCAATTAAATATCCAAATAGAGAGAAG
66 ATGCCCAATTAAATATCCAAATAGAGAGAAG
* * * *
49405920 ACGATTGAGATATCACCTTTTGTGCAATGTTATTGGTGTAGTGCAGAATATCATAACGGTATCCA
1 ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
* *
49405985 ATGTCCAATTAAATATCCAACTAGAGA
66 ATGCCCAATTAAATATCCAAATAGAGA
49406012 AGAAAGTAAC
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (96 bp):
ACGATTGAGATATCACATTTTGTGCAATATTATTGGTGTAGTGCAAAAGATCATAACGGTATCCA
ATGCCCAATTAAATATCCAAATAGAGAGAAG
Found at i:49408990 original size:21 final size:22
Alignment explanation
Indices: 49408964--49409017 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
49408954 TGGCCTGCAG
**
49408964 CACGGGCGTGT-CCTAGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
*
49408985 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
49409007 CACGGGCGTGT
1 CACGGGCGTGT
49409018 GAGCCTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.13, C:0.31, G:0.37, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:49410601 original size:46 final size:45
Alignment explanation
Indices: 49410420--49410729 Score: 211
Period size: 46 Copynumber: 6.6 Consensus size: 45
49410410 TTATTTATGT
** * * *
49410420 GCCAGTGTAAGACATGTCAAGTACATGCATCGGCCAC-ATTATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACGA-GATGTAA
* * * *
49410466 GCCAGTGTAAGACCATGTATGGGACATGGCATTGGCATTGAGACG-AGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CGAGATGTA-A
* * *
49410514 GCTAGTGTAAGACATATCTGGGACATGCATCAGC-CTTGAGATGTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC--GAGATGTAA
*
49410560 GCCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGT--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACGAGATGTAA
* *
49410604 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCT--
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACG---AGATGTAA
** * *
49410652 GTTAATGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACG-AGATGT-A-A
*
49410702 GCTAGTGTAAGAACATGTCTGGGACATG
1 GCCAGTGTAAG-ACATGTCTGGGACATG
49410730 GCGTCGGCCT
Statistics
Matches: 215, Mismatches: 29, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 73 0.34
47 26 0.12
48 63 0.29
49 2 0.01
50 23 0.11
51 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACGAGATGTAA
Found at i:49410671 original size:48 final size:48
Alignment explanation
Indices: 49410471--49410832 Score: 236
Period size: 48 Copynumber: 7.6 Consensus size: 48
49410461 TGAAAGCCAG
* * * * *
49410471 TGTAAGACCATGTATGGGACATGGCATTGGCA--T-TGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGATGAG-TC-AA
* * *
49410519 TGTAAGA-CATATCTGGGACAT-GCATCAGC-C-T-TGAGATGTAAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGATG--AGTCAA
* *
49410565 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTACG---AGATGTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ACGTATAGATGAGTCAA
** *
49410609 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATCTGTTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATGAGTCAA
* * *
49410657 TGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATG-TGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATA-GATGAG-TC-AA
* * * * *
49410707 TGTAAGAACATGTCTGGGACATGGCGTCGGCCTCGATTTCGAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CACG-TATAGATGAGTCAA
* * ** * *
49410756 TTTAAGATCATGTCTGGGACATGGCATC-G-AATTGATGGATGAGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACGT-ATAGATGAGTCAA
*
49410803 TGTAAGACCATGTCTTGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
49410833 TATTATACCC
Statistics
Matches: 253, Mismatches: 41, Indels: 40
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 58 0.23
47 43 0.17
48 59 0.23
49 27 0.11
50 30 0.12
51 6 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGATGAGTCAA
Found at i:49418312 original size:47 final size:45
Alignment explanation
Indices: 49418240--49418699 Score: 352
Period size: 47 Copynumber: 9.8 Consensus size: 45
49418230 GGGTAAGGTA
* * *
49418240 CCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACATCTCAAG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCAAG
* * **
49418287 TCGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTTGTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA-CATC-TCAAG
* * * * * *
49418335 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AAG
* * *
49418381 CCGATGCATGTACCAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-G
* * *
49418427 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA-AG
* **
49418475 CCGATGCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTTGTAG
1 CCGATGCATGTCCCAGACAT-GTCTTACACTAGCTCA-CATC-TCAAG
* * * * * *
49418522 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTC-AAG
* * * * *
49418568 CAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAA-G
* * * *
49418614 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCA-AG
* *
49418662 CTGATGCATGTCCCAGACATGTCTTACACCAGCTCACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
49418700 CACGAATGAC
Statistics
Matches: 333, Mismatches: 60, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
45 4 0.01
46 127 0.38
47 141 0.42
48 59 0.18
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTCAAG
Found at i:49418555 original size:187 final size:187
Alignment explanation
Indices: 49418240--49418690 Score: 773
Period size: 187 Copynumber: 2.4 Consensus size: 187
49418230 GGGTAAGGTA
* * * * * *
49418240 CCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACAT-CTCA-AGTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATG-CATGTCCCA
49418303 GACATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGC
64 GACATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGC
* *
49418368 TTACTTCTCGAGGCCGATGCATGTACCAGACATGTCTTACACTAGCTCTCGTCTCAATG
129 TTACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
*
49418427 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
49418492 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
66 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
49418557 ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
131 ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
*
49418614 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
49418679 CAT-GTCTTACAC
66 CATGGTCTTACAC
49418691 CAGCTCACAC
Statistics
Matches: 251, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
186 9 0.04
187 235 0.94
188 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (187 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCGATGCATGTCCCAGA
CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTT
ACTTCTCGAGGCAGATGCATGTACCACACATGTCTTACACTAGCTCTCGTCTCAATG
Found at i:49418578 original size:140 final size:137
Alignment explanation
Indices: 49418240--49418690 Score: 444
Period size: 140 Copynumber: 3.2 Consensus size: 137
49418230 GGGTAAGGTA
* * * *
49418240 CCGATGCCATGTCCCAAACACGGTCTTACACTGGCTCACATCTCAAGTCGATGCCATGTCCCAGA
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAGGCGATGCCATGTCCCAGA
* * * * * *
49418305 CATGGTCTTACACTAACTATCATCTTGTAGTCGATGCATGTCCCAGACAT-GTCTTACATTGGCT
64 CATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGCT
* *
49418369 TACTTCTCG-AGG
127 T-CATCTTGTA-G
* * * *
49418381 CCGATGCATGTACCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATGCCATGTCCCAGA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAA-GGCGATGCCATGTCCCAGA
**
49418445 CATGGTCTTACACTAGCTCTCATAATATGGCCGATGCATGTCCCAGACATGGTCTTACACTAACT
64 CATGGTCTTACACTAGCTCTCAT-ATAT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGCT
49418510 ATCATCTTGTAG
127 -TCATCTTGTAG
* * * * * *
49418522 TCGATGCATGTCCCAGACATGTCTTACATTGGCTTACTTCTCGAGGCAGATG-CATGTACCACAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGC-GATGCCATGTCCCAGAC
* *
49418586 AT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTCATAT--ATGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCT
** * *
49418650 CTCATAATATGG
127 -TCATCTTGTAG
*
49418662 CTGATGCATGTCCCAGACATGTCTTACAC
1 CCGATGCATGTCCCAGACATGTCTTACAC
49418691 CAGCTCACAC
Statistics
Matches: 260, Mismatches: 40, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
138 1 0.00
139 45 0.17
140 149 0.57
141 63 0.24
142 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (137 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTCATATATGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTCAT
CTTGTAG
Found at i:49430294 original size:37 final size:37
Alignment explanation
Indices: 49430244--49430322 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
49430234 TTATTACGAA
* * * *
49430244 GTCTTACTCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
49430281 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
49430318 GTCTT
1 GTCTT
49430323 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:49430528 original size:47 final size:47
Alignment explanation
Indices: 49430441--49430939 Score: 719
Period size: 47 Copynumber: 10.4 Consensus size: 47
49430431 CCTTTCGGGA
* * * * * * * *
49430441 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49430488 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49430535 CTTATCACATATATACACTTTCACATTCATCGCATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49430582 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49430629 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49430676 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
49430723 CTCATCACACATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49430770 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
49430821 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
49430872 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
49430921 CTTATCACATATATACACT
1 CTTATCACATATATACACT
49430940 CTCTTGGCTG
Statistics
Matches: 418, Mismatches: 28, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 270 0.65
48 1 0.00
49 60 0.14
50 1 0.00
51 86 0.21
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49444394 original size:47 final size:47
Alignment explanation
Indices: 49444323--49444727 Score: 666
Period size: 47 Copynumber: 8.6 Consensus size: 47
49444313 CCTTTCGGGA
* * * * * *
49444323 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49444370 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49444417 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49444464 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49444511 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49444558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49444605 CTTATCACATATATATACACTTTCACATTCATCGCATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49444654 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49444701 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
49444728 TATTCAAATA
Statistics
Matches: 338, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 294 0.87
49 44 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49444401 original size:25 final size:25
Alignment explanation
Indices: 49444373--49444451 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
49444363 ACTCGGCCCT
49444373 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
49444398 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
49444420 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
49444445 ATCACAT
1 ATCACAT
49444452 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:49447060 original size:39 final size:40
Alignment explanation
Indices: 49447017--49447181 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 40
49447007 CTCGTTCAAG
* * * *
49447017 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
49447056 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
49447096 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
49447136 GGCCTTCGGGACTTGACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
49447176 TGCCTT
1 TGCCTT
49447182 TTGATCTTAG
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 26 0.24
40 77 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:49447106 original size:40 final size:39
Alignment explanation
Indices: 49447054--49447181 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 39
49447044 TAACTCATAC
* *
49447054 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
49447094 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
49447134 AAGGCCTTCGGGACTTGACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
49447174 AATGCCTT
1 AATGCCTT
49447182 TTGATCTTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:49447197 original size:80 final size:79
Alignment explanation
Indices: 49447017--49447237 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 79
49447007 CTCGTTCAAG
* * * * * * * *
49447017 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT-ACCCGGATAT
*
49447081 TAAAACTCGCACGAA
65 TAAAACTCGCACAAA
*
49447096 TGCCTTCGGGACTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGACTTGACCCGGA
1 TGCCTTCGGGACTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTCGGGACTT-ACCCGGA
49447158 -ATTAATAACTCGCACAAA
62 TATTAA-AACTCGCACAAA
** **
49447176 TGCCTT-TTGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTA-CCCGGA
49447238 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 34 0.29
80 69 0.59
81 10 0.09
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTACCCGGATATT
AAAACTCGCACAAA
Found at i:49451940 original size:40 final size:40
Alignment explanation
Indices: 49451877--49452308 Score: 711
Period size: 40 Copynumber: 10.8 Consensus size: 40
49451867 CCAGCATGAT
* * *
49451877 TGCTCTTCGGGACCTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
49451917 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
49451957 TGCTCTTCGGAATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49451997 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
49452037 TGCTTTTCAAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49452077 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49452117 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
49452157 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49452197 TGCTCTCCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49452237 TGCTCTCCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
49452277 TGCTCTTCGGGACTTAGCCCAGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
49452309 CTCAATTCTC
Statistics
Matches: 370, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 370 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:49453790 original size:47 final size:47
Alignment explanation
Indices: 49453719--49454074 Score: 563
Period size: 47 Copynumber: 7.6 Consensus size: 47
49453709 CCCTTCGGGA
* * * * * * *
49453719 CTTATCACATTTATACACTTTCACATCCACCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
49453766 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49453813 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49453860 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
49453907 CTTATCACATATATACACTTTCACATTCATCACATCGGTGATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49453953 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49454001 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49454048 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
49454075 TATTCAAATA
Statistics
Matches: 290, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
46 37 0.13
47 216 0.74
48 37 0.13
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49453797 original size:25 final size:25
Alignment explanation
Indices: 49453769--49453847 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
49453759 ACTCGGCCCT
49453769 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
49453794 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
49453816 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
49453841 ATCACAT
1 ATCACAT
49453848 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:49461963 original size:30 final size:29
Alignment explanation
Indices: 49461906--49461993 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
49461896 TAAGGCTATT
* * *
49461906 GATTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGATTACAACCATC
*
49461935 GATTAATGAAAAGGGATGATTTCAACCATC
1 GATT-ATGAAAAGGGATGATTACAACCATC
* * *
49461965 GAATATAAAAAGGGACGATTACAACCATC
1 GATTATGAAAAGGGATGATTACAACCATC
49461994 ATTTAGCACA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
29 26 0.52
30 24 0.48
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (29 bp):
GATTATGAAAAGGGATGATTACAACCATC
Found at i:49471361 original size:48 final size:48
Alignment explanation
Indices: 49471306--49471512 Score: 222
Period size: 48 Copynumber: 4.3 Consensus size: 48
49471296 AGGTCCCGTG
* * *
49471306 TAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCTTGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCTCGTA
* *
49471354 TAAGACCATATCTGGGATATGGCATCGGCATC-AGTATGAGATCTCATG
1 TAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGAGATCTCGTA
* *
49471402 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGA-AGTCCCGTA
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGA-TCTCGTA
* * * * * * * *
49471450 TAAGACCATGTCTGGGACATGGAATCAGCACCGTTATAAGA-CTTCGTG
1 TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATC-TCGTA
*
49471498 TAAGACCATAGCTGG
1 TAAGACCATATCTGG
49471513 TTTGTTGGCA
Statistics
Matches: 133, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.02
48 128 0.96
49 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATCGGCATCGATATGAGATCTCGTA
Found at i:49471500 original size:96 final size:96
Alignment explanation
Indices: 49471302--49471512 Score: 257
Period size: 96 Copynumber: 2.2 Consensus size: 96
49471292 ATTGAGGTCC
**
49471302 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCTTGTATAAGACCATATCT
1 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCCCGTATAAGACCATATCT
* * * *
49471367 GGGATATGGCATCGGCATCAGTATGAGATCT
66 GGGACATGGAATCAGCATCAGTATAAGATCT
* * * * *
49471398 CATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGA-AGTCCCGTATAAGACCATGTC
1 CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGA-TCCCGTATAAGACCATATC
*
49471462 TGGGACATGGAATCAGCA-CCGTTATAAGA-CTT
65 TGGGACATGGAATCAGCATCAG-TATAAGATC-T
*
49471494 CGTGTAAGACCATAGCTGG
1 CGTGTAAGACCATATCTGG
49471513 TTTGTTGGCA
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
95 4 0.04
96 94 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (96 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGACATCGATAAGAGATCCCGTATAAGACCATATCT
GGGACATGGAATCAGCATCAGTATAAGATCT
Found at i:49477260 original size:29 final size:29
Alignment explanation
Indices: 49477226--49477507 Score: 189
Period size: 29 Copynumber: 9.7 Consensus size: 29
49477216 TATTAGCGAT
*
49477226 CATCGAATATGAAAAGGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * *
49477255 TATCGATTATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGCTGTCGAC
* * *
49477284 CATC-AACTACGAAAAGGGATGGTGACGAC
1 CATCGAA-TATGAAAAGGGATGCTGTCGAC
* *
49477313 CATCAAATATGAAAAGGGATGGTGAT-GAC
1 CATCGAATATGAAAAGGGATGCTG-TCGAC
* *
49477342 CATTGAATATGAAAAGGGATAGCT-TTGAC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * * *
49477371 TATCAAAAATGAAAAAGGATAGCT-TCGGC
1 CATCGAATATGAAAAGGGAT-GCTGTCGAC
* * * * *
49477400 TATTGATTATGAAAAGGGATGGTGACGAC
1 CATCGAATATGAAAAGGGATGCTGTCGAC
* * * *
49477429 CATC-AACTATGGAAAGGGATGGTGACAAC
1 CATCGAA-TATGAAAAGGGATGCTGTCGAC
* * *
49477458 CATCGATTAATGAAAAGGGATGATTTCGAC
1 CATCGAAT-ATGAAAAGGGATGCTGTCGAC
*
49477488 CATCAAATATGAAAAGGGAT
1 CATCGAATATGAAAAGGGAT
49477508 AGTTACAACC
Statistics
Matches: 202, Mismatches: 41, Indels: 20
0.77 0.16 0.08
Matches are distributed among these distances:
28 7 0.03
29 168 0.83
30 27 0.13
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATGCTGTCGAC
Found at i:49477434 original size:116 final size:117
Alignment explanation
Indices: 49477294--49477509 Score: 319
Period size: 116 Copynumber: 1.9 Consensus size: 117
49477284 CATCAACTAC
** *
49477294 GAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGATGACCATTGAAT-ATGAAAAG
1 GAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAATAATGAAAAG
* *
49477358 GGATAGCTTT-GACTATCAAAAATGAAAAAGGATAGCTTCGGCTATTGATTAT
66 GGAT-GATTTCGACCATCAAAAATGAAAAAGGATAGCTTCGGCTATTGATTAT
* * *
49477410 GAAAAGGGATGGTGACGACCATCAACTATGGAAAGGGATGGTGACAACCATCGATTAATGAAAAG
1 GAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAATAATGAAAAG
* *
49477475 GGATGATTTCGACCATCAAATATGAAAAGGGATAG
66 GGATGATTTCGACCATCAAAAATGAAAAAGGATAG
49477510 TTACAACCAT
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
116 54 0.61
117 34 0.39
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.22
Consensus pattern (117 bp):
GAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATGGTGACAACCATCGAATAATGAAAAG
GGATGATTTCGACCATCAAAAATGAAAAAGGATAGCTTCGGCTATTGATTAT
Found at i:49477520 original size:29 final size:29
Alignment explanation
Indices: 49477262--49477507 Score: 217
Period size: 29 Copynumber: 8.4 Consensus size: 29
49477252 GGCTATCGAT
*
49477262 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAA
*
49477291 TACGAAAAGGGATGGTGACGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCAAA
* **
49477320 TATGAAAAGGGATGGTGATGACCATTGAA
1 TATGAAAAGGGATGGTGACGACCATCAAA
* ** *
49477349 TATGAAAAGGGATAGCT-TTGACTATCAAA
1 TATGAAAAGGGAT-GGTGACGACCATCAAA
* * * * * * ** *
49477378 AATGAAAAAGGATAGCT-TCGGCTATTGAT
1 TATGAAAAGGGAT-GGTGACGACCATCAAA
*
49477407 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAA
* * * *
49477436 TATGGAAAGGGATGGTGACAACCATCGAT
1 TATGAAAAGGGATGGTGACGACCATCAAA
* **
49477465 TAATGAAAAGGGATGATTTCGACCATCAAA
1 T-ATGAAAAGGGATGGTGACGACCATCAAA
49477495 TATGAAAAGGGAT
1 TATGAAAAGGGAT
49477508 AGTTACAACC
Statistics
Matches: 176, Mismatches: 38, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
28 2 0.01
29 150 0.85
30 24 0.14
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAA
Found at i:49484018 original size:20 final size:20
Alignment explanation
Indices: 49483990--49484027 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49483980 CTAGGAACTA
49483990 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
49484010 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
49484028 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:49487247 original size:18 final size:19
Alignment explanation
Indices: 49487217--49487253 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
49487207 AAGATAGCCT
49487217 AAAAAGTGCAAAA-GAAAA
1 AAAAAGTGCAAAAGGAAAA
49487235 AAAAAGT-CAAAAAGGAAAA
1 AAAAAGTGC-AAAAGGAAAA
49487254 TTACACAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 11 0.65
19 5 0.29
ACGTcount: A:0.73, C:0.05, G:0.16, T:0.05
Consensus pattern (19 bp):
AAAAAGTGCAAAAGGAAAA
Found at i:49490791 original size:49 final size:49
Alignment explanation
Indices: 49490735--49490907 Score: 287
Period size: 49 Copynumber: 3.6 Consensus size: 49
49490725 GTATATTTGA
*
49490735 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
*
49490784 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
* *
49490831 ATGAATGTGAAAGTGTATATATATGTGATAAAGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
*
49490880 ATGAATGTGAAAGTGTATATATGTGTGA
1 ATGAATGTGAAAGTGTATATATATGTGA
49490908 CAGCCCAAAA
Statistics
Matches: 116, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
47 46 0.40
49 70 0.60
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:49490822 original size:47 final size:47
Alignment explanation
Indices: 49490735--49490904 Score: 268
Period size: 47 Copynumber: 3.5 Consensus size: 47
49490725 GTATATTTGA
*
49490735 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
49490784 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
49490831 ATGAATGTGAAAGTGTATATATATGTGATAAAGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
49490880 ATGAATGTGAAAGTGTATATATGTG
1 ATGAATGTGAAAGTGTATATATGTG
49490905 TGACAGCCCA
Statistics
Matches: 114, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
47 58 0.51
49 56 0.49
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:49492636 original size:79 final size:81
Alignment explanation
Indices: 49492500--49492684 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
49492490 TTGAATGATG
* *
49492500 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
49492564 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
49492579 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
49492641 ATTGTTCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
49492659 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49492685 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:49492691 original size:40 final size:39
Alignment explanation
Indices: 49492501--49492684 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
49492491 TGAATGATGT
* * * *
49492501 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
49492541 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
49492581 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
49492619 TCCGGGTTAAGTCCCGAAGGCAATTGTTCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49492660 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49492685 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49492706 original size:79 final size:79
Alignment explanation
Indices: 49492553--49492717 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
49492543 GGACTAAGAT
* * **
49492553 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49492618 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
49492632 CCGAAGGCAATTGTTCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49492695 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49492711 CCGAAGG
1 CCGAAGG
49492718 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49500487 original size:79 final size:81
Alignment explanation
Indices: 49500351--49500535 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
49500341 TTGAATGATG
* *
49500351 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
49500415 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
49500430 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
49500492 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
49500510 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49500536 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:49500549 original size:40 final size:40
Alignment explanation
Indices: 49500352--49500535 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
49500342 TGAATGATGT
* * * *
49500352 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
49500392 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
49500432 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
49500470 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
49500511 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49500536 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:49500557 original size:79 final size:79
Alignment explanation
Indices: 49500404--49500568 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
49500394 GGACTAAGAT
* * **
49500404 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49500469 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49500483 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49500546 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49500562 CCGAAGG
1 CCGAAGG
49500569 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49501977 original size:47 final size:47
Alignment explanation
Indices: 49501902--49502336 Score: 699
Period size: 47 Copynumber: 9.3 Consensus size: 47
49501892 GGGTGTTACA
* *
49501902 ATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
49501949 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
49501996 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGGGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
49502043 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
49502090 ATATGTCATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
49502137 ATATGTGACAAGGCCTAATAGCCGATGTGATGAATGCGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
49502184 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
49502231 ATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * *
49502278 ATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
49502325 AAATTTGATAAG
1 ATATGTGATAAG
49502337 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 361 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:49502505 original size:37 final size:37
Alignment explanation
Indices: 49502455--49502599 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
49502445 CCGAGCTCTA
***
49502455 AAGACCCGATGACTACGTGTGGAGAGGATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
49502492 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
49502529 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
49502566 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
49502600 AGCTAAAGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:49504157 original size:40 final size:40
Alignment explanation
Indices: 49503834--49504145 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
49503824 GAGAATTGAG
49503834 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
49503874 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
49503914 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
49503954 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49503994 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49504034 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
49504074 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
49504114 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
49504146 ATCATGCTGG
Statistics
Matches: 245, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 245 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:49508001 original size:47 final size:47
Alignment explanation
Indices: 49507914--49508511 Score: 998
Period size: 47 Copynumber: 12.6 Consensus size: 47
49507904 GTATATTTGA
*
49507914 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
49507963 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
49508010 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
49508059 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
49508106 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
49508153 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
49508200 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
49508247 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
49508294 ATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
49508341 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
49508388 ATGAATGTGAAAGTCTATATATGTGGTAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
49508435 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
49508482 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
49508512 TCCCGAAGGG
Statistics
Matches: 520, Mismatches: 27, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 463 0.89
49 57 0.11
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:49508680 original size:37 final size:37
Alignment explanation
Indices: 49508630--49508774 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
49508620 CCGAGCTCTA
* *
49508630 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
49508667 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
49508704 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
49508741 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
49508775 AGCTAAAGGT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:49515233 original size:13 final size:13
Alignment explanation
Indices: 49515215--49515239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49515205 ACAAATGATA
49515215 AAATTTTCACACG
1 AAATTTTCACACG
49515228 AAATTTTCACAC
1 AAATTTTCACAC
49515240 ATATCACACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:49518596 original size:90 final size:96
Alignment explanation
Indices: 49518481--49518656 Score: 267
Period size: 90 Copynumber: 1.9 Consensus size: 96
49518471 ATGAACTCAT
49518481 TATGTGGTAAAGCGAATGGCTAATGTGAATAT-G-TATGA-A-ATGTATATGTGGT-AAG-CGAA
1 TATGTGGTAAAGCGAATGGCTAATGTGAATATAGTTATGAGATATGTATATGTGGTAAAGCCGAA
49518540 TGGCTAATGTGAAATATGTATGAGATATGCA
66 TGGCTAATGTGAAATATGTATGAGATATGCA
*
49518571 TATGTGGTAAAGCGAATGG-TCAATGTGAATATAGTTTTTGAGATATGTATATGTGGTAAAGCCG
1 TATGTGGTAAAGCGAATGGCT-AATGTGAATATAG-TTATGAGATATGTATATGTGGTAAAGCCG
*
49518635 AATGGCTAGTGTGAAATATGTA
64 AATGGCTAATGTGAAATATGTA
49518657 CGCGATGTGC
Statistics
Matches: 76, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
89 1 0.01
90 30 0.39
91 1 0.01
93 4 0.05
94 1 0.01
95 13 0.17
96 3 0.04
97 23 0.30
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (96 bp):
TATGTGGTAAAGCGAATGGCTAATGTGAATATAGTTATGAGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATATGTATGAGATATGCA
Found at i:49518692 original size:97 final size:94
Alignment explanation
Indices: 49518520--49518696 Score: 214
Period size: 97 Copynumber: 1.8 Consensus size: 94
49518510 TATGTATGAA
*
49518520 ATGTATATGTGGTAAGCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCG
1 ATGTATATGTGGTAAGCGAATGGCTAATGTGAAATATGTACGAGATATGCATATGTGG-AAAGCG
* **
49518585 AATGGTCAATGTGAATATAGTTTTTGAGAT
65 AACGACCAATGTGAATATAGTTTTTGAGAT
* * * *
49518615 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGCGATGTGCGTATATTGTGG-C
1 ATGTATATGTGGT-AAG-CGAATGGCTAATGTGAAATATGTACGAGATATGC--ATA-TGTGGAA
49518679 A-CGAACGACCAATGTGAA
61 AGCGAACGACCAATGTGAA
49518697 AGGTGTGTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
95 13 0.19
96 3 0.04
97 44 0.64
98 1 0.01
99 3 0.04
100 5 0.07
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (94 bp):
ATGTATATGTGGTAAGCGAATGGCTAATGTGAAATATGTACGAGATATGCATATGTGGAAAGCGA
ACGACCAATGTGAATATAGTTTTTGAGAT
Found at i:49518854 original size:35 final size:34
Alignment explanation
Indices: 49518808--49518881 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 34
49518798 ATATTTCCGG
49518808 GGTAAGACCCGACGACTACGT-GTGGAGATTATGTC
1 GGTAAGACCCGACGACTACGTGGTGGAGA-T-TGTC
*
49518843 GGTAAGACCCGATGACTACGTGGTGGAGATTGTC
1 GGTAAGACCCGACGACTACGTGGTGGAGATTGTC
49518877 GGTAA
1 GGTAA
49518882 CCTGATACTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
34 9 0.24
35 21 0.57
36 7 0.19
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.23
Consensus pattern (34 bp):
GGTAAGACCCGACGACTACGTGGTGGAGATTGTC
Found at i:49544508 original size:49 final size:49
Alignment explanation
Indices: 49544431--49544675 Score: 328
Period size: 49 Copynumber: 4.9 Consensus size: 49
49544421 TAGCCGAAGC
* * *
49544431 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
49544480 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
49544530 CATCTGATACACGTAGTCGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
49544581 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
49544630 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
49544676 TCACAATAGC
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 84 0.50
50 47 0.28
51 38 0.22
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:49544607 original size:101 final size:98
Alignment explanation
Indices: 49544444--49544675 Score: 338
Period size: 100 Copynumber: 2.3 Consensus size: 98
49544434 CTGGTACGCA
* * * *
49544444 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
*
49544509 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCTGATACACG
* *
49544543 TAGTCGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** *
49544608 TAGTACTACACATGCGACCAATTATCTGGTACACG
64 TAGTACTACACACGCGACCAACCATCTGATACACG
49544643 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
49544676 TCACAATAGC
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 29 0.25
100 46 0.39
101 43 0.36
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCTGATACACG
Found at i:49545359 original size:30 final size:29
Alignment explanation
Indices: 49545325--49545384 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
49545315 CCTTTAATAC
49545325 AAACTTTGGCAAAATTAC-CATTTTGCCCCT
1 AAACTTTGGC-AAATTACAC-TTTTGCCCCT
* *
49545355 AAACTTTTGCATATTACACTTTTGCCCCT
1 AAACTTTGGCAAATTACACTTTTGCCCCT
49545384 A
1 A
49545385 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (29 bp):
AAACTTTGGCAAATTACACTTTTGCCCCT
Found at i:49546621 original size:27 final size:27
Alignment explanation
Indices: 49546586--49546673 Score: 124
Period size: 27 Copynumber: 3.1 Consensus size: 27
49546576 CACATACCTG
49546586 TATATGGCCCACTAGGCCCAATCACATT
1 TATATGGCCCA-TAGGCCCAATCACATT
49546614 TAT-TGGCCCATAGGCCCAAATCACATT
1 TATATGGCCCATAGGCCC-AATCACATT
*
49546641 TATATGGCCCATCAGGCCCAATTCATATT
1 TATATGGCCCAT-AGGCCCAA-TCACATT
49546670 TATA
1 TATA
49546674 GACATGCTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
26 7 0.13
27 19 0.35
28 13 0.24
29 16 0.29
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
TATATGGCCCATAGGCCCAATCACATT
Found at i:49550610 original size:29 final size:29
Alignment explanation
Indices: 49550549--49550638 Score: 130
Period size: 29 Copynumber: 3.1 Consensus size: 29
49550539 CACATACCTG
* *
49550549 TATATGGCCTACTAGGCCC-AATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
49550577 TATATGGCCCAATAGGCCCAAATCACATT
1 TATATGGCCCAATAGGCCCAAATCACATT
*
49550606 TATATGGCCC-ATCAGGCCCAATTCACATT
1 TATATGGCCCAAT-AGGCCCAAATCACATT
49550635 TATA
1 TATA
49550639 GACATGCTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
28 19 0.33
29 38 0.67
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCAATAGGCCCAAATCACATT
Found at i:49554266 original size:28 final size:28
Alignment explanation
Indices: 49554234--49554351 Score: 137
Period size: 28 Copynumber: 4.1 Consensus size: 28
49554224 CACATACCTG
49554234 TATATGGCCCATGAGGCCCAATCACATT
1 TATATGGCCCATGAGGCCCAATCACATT
*
49554262 TATATGGCCCACGAGGCCCAATCACATT
1 TATATGGCCCATGAGGCCCAATCACATT
* * * * *
49554290 TGTATGGCCCATTAAGTCCAAATCATATT
1 TATATGGCCCA-TGAGGCCCAATCACATT
* * *
49554319 TGTATGGCTCATCAGGCCCAATTCACATT
1 TATATGGCCCATGAGGCCCAA-TCACATT
49554348 TATA
1 TATA
49554352 GTCATGCTCA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
28 44 0.59
29 31 0.41
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (28 bp):
TATATGGCCCATGAGGCCCAATCACATT
Found at i:49554314 original size:57 final size:57
Alignment explanation
Indices: 49554236--49554348 Score: 140
Period size: 57 Copynumber: 2.0 Consensus size: 57
49554226 CATACCTGTA
* *
49554236 TATGGCCCATGAGGCCCAATCACATTTATATGGCCCA-CGAGGCCCAA-TCACATTTG
1 TATGGCCCATAAGGCCAAATCACATTTATATGGCCCATC-AGGCCCAATTCACATTTG
* * * *
49554292 TATGGCCCATTAAGTCCAAATCATATTTGTATGGCTCATCAGGCCCAATTCACATTT
1 TATGGCCCA-TAAGGCCAAATCACATTTATATGGCCCATCAGGCCCAATTCACATTT
49554349 ATAGTCATGC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
56 9 0.19
57 30 0.62
58 9 0.19
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (57 bp):
TATGGCCCATAAGGCCAAATCACATTTATATGGCCCATCAGGCCCAATTCACATTTG
Found at i:49555370 original size:31 final size:32
Alignment explanation
Indices: 49555299--49555370 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
49555289 TATTATTTTT
** *
49555299 TGTGTTTACTGTATGTGAATTGATATCTGTTTT
1 TGTGTTTACTGTATGAAAATTGA-ATCTGTTTG
49555332 TGTGTTTACTGTATGAAAATTTG-ATC-GTTTG
1 TGTGTTTACTGTATGAAAA-TTGAATCTGTTTG
49555363 TGTGTTTA
1 TGTGTTTA
49555371 ATTTGATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 12 0.34
32 3 0.09
33 17 0.49
34 3 0.09
ACGTcount: A:0.19, C:0.06, G:0.22, T:0.53
Consensus pattern (32 bp):
TGTGTTTACTGTATGAAAATTGAATCTGTTTG
Found at i:49556478 original size:44 final size:44
Alignment explanation
Indices: 49556408--49556526 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 44
49556398 TATGTGTTAT
*
49556408 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTATGATTTA
1 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTATAATTTA
* * *
49556452 CATGTAAGACCACGTCTGGGATGTTGGCATCGACTTATAATTTA
1 CATGTAAGACCACATCTAGGACGTTGGCATCGACTTATAATTTA
* *
49556496 CGTGTAAGACTACATCTAGGACGTTGGCATC
1 CATGTAAGACCACATCTAGGACGTTGGCATC
49556527 ATATTTGGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
CATGTAAGACCACATCTAGGACGTTGGCATCGACTTATAATTTA
Found at i:49561554 original size:21 final size:21
Alignment explanation
Indices: 49561530--49561570 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49561520 GTGTGAGACC
49561530 CTCACACGAC-CGTGCCTACCG
1 CTCACAC-ACTCGTGCCTACCG
*
49561551 CTCACACACTCGTGTCTACC
1 CTCACACACTCGTGCCTACC
49561571 CTGTACTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.20, C:0.46, G:0.15, T:0.20
Consensus pattern (21 bp):
CTCACACACTCGTGCCTACCG
Found at i:49594283 original size:25 final size:25
Alignment explanation
Indices: 49594221--49594283 Score: 117
Period size: 25 Copynumber: 2.5 Consensus size: 25
49594211 GAAGTGGCAA
*
49594221 GTGGCGTCACATATGGGGCCCAGAG
1 GTGGCGTCACATGTGGGGCCCAGAG
49594246 GTGGCGTCACATGTGGGGCCCAGAG
1 GTGGCGTCACATGTGGGGCCCAGAG
49594271 GTGGCGTCACATG
1 GTGGCGTCACATG
49594284 CTTGACAAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.17
Consensus pattern (25 bp):
GTGGCGTCACATGTGGGGCCCAGAG
Found at i:49595589 original size:28 final size:29
Alignment explanation
Indices: 49595507--49595601 Score: 138
Period size: 29 Copynumber: 3.3 Consensus size: 29
49595497 AAAGCATGAC
49595507 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
49595536 TACGAATGTGATTTGGACCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
49595565 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
49595593 TATGCATGT
1 TATGAATGT
49595602 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 22 0.38
29 36 0.62
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:49595983 original size:227 final size:227
Alignment explanation
Indices: 49595588--49596043 Score: 867
Period size: 227 Copynumber: 2.0 Consensus size: 227
49595578 GGGCCTAGTG
49595588 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
1 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
* *
49595653 TGCTTAAACGGACAGACAACTTAATTAATTTATTGCGACCATGGACGAGTCATAAGGTTAAGGTG
66 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCGAACATGGACGAGTCATAAGGTTAAGGTG
*
49595718 TGGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCAGTCTCAA
131 TAGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCAGTCTCAA
49595783 TGACTCACCTCCTCTTCTCTGGAATCCTACCT
196 TGACTCACCTCCTCTTCTCTGGAATCCTACCT
*
49595815 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATTTGAAAC
1 GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
49595880 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCGAACATGGACGAGTCATAAGGTTAAGGTG
66 TGCTTAAACAGACAGACAACTTAATTAATTTATTGCGAACATGGACGAGTCATAAGGTTAAGGTG
*
49595945 TAGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCGGTCTCAA
131 TAGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCAGTCTCAA
49596010 TGACTCACCTCCTCTTCTCTGGAATCCTACCT
196 TGACTCACCTCCTCTTCTCTGGAATCCTACCT
49596042 GG
1 GG
49596044 TGCATAGTAT
Statistics
Matches: 224, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
227 224 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (227 bp):
GGCCATATGCATGTATGTAGACTTGTTTGGGCTTTGTAAGGGGTTTTGGGCTTAGTATCTGAAAC
TGCTTAAACAGACAGACAACTTAATTAATTTATTGCGAACATGGACGAGTCATAAGGTTAAGGTG
TAGTAATGGGTATATGCATGTCTAGGATTGGATCTAGGGAGAGCTTGGTACTTAAGCAGTCTCAA
TGACTCACCTCCTCTTCTCTGGAATCCTACCT
Found at i:49604579 original size:17 final size:18
Alignment explanation
Indices: 49604546--49604579 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49604536 TCTAAGGAAG
49604546 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
49604564 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
49604580 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:49613165 original size:17 final size:17
Alignment explanation
Indices: 49613143--49613176 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
49613133 TTTGCCGGTA
49613143 ACTATAGCTATAGTGAG
1 ACTATAGCTATAGTGAG
49613160 ACTATAGCTATAGTGAG
1 ACTATAGCTATAGTGAG
49613177 TCAACTAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
ACTATAGCTATAGTGAG
Found at i:49614618 original size:55 final size:55
Alignment explanation
Indices: 49614549--49614677 Score: 179
Period size: 55 Copynumber: 2.3 Consensus size: 55
49614539 TGCCCTTAGC
* * *
49614549 CCGTGTGCAACACTGACTTTAAAACACGGCCATGCCACATGCCCGTGTGGCCTG-
1 CCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTGA
* *
49614603 CTCGTGTACAACACTGACTTTGAAACACGGCTATGACACACGCCCGTGTGGCCTGA
1 C-CGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTGA
* *
49614659 CCGTGTTCAACACTAACTT
1 CCGTGTACAACACTGACTT
49614678 CAAATTTTAG
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
54 1 0.02
55 64 0.97
56 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (55 bp):
CCGTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCTGA
Found at i:49615552 original size:50 final size:49
Alignment explanation
Indices: 49615431--49615651 Score: 196
Period size: 49 Copynumber: 4.6 Consensus size: 49
49615421 GAGATAAGTT
* * *
49615431 GCCGATGCCATGTCCCGGACATGGTCTTACACTGGCTATCACCATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATCCAG
* * * *
49615480 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAC-CATCCAG
* *
49615530 GTCGATGCCATGTCCCAAACATGGTCTTACACT-G--A-CA-CATCTC-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATC-CAG
* *
49615574 TAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T-A-CATCTCGAG
1 --GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATC-C-AG
*
49615622 GACGATG-CATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
49615652 TTGGCTCTCA
Statistics
Matches: 143, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 13 0.09
45 15 0.10
46 32 0.22
47 8 0.06
48 1 0.01
49 39 0.27
50 35 0.24
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACCATCCAG
Found at i:49615619 original size:46 final size:48
Alignment explanation
Indices: 49615434--49615702 Score: 224
Period size: 46 Copynumber: 5.7 Consensus size: 48
49615424 ATAAGTTGCC
* * *
49615434 GATGCCATGTCCCGGACATGGTCTTACACTGGC-TATCACCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATC-TCGAGGCT
* * * * *
49615483 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGAGGCT
* *
49615532 CGATGCCATGTCCCAAACATGGTCTTACACTGAC--ACATCTCGTA-GCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGGCT
49615579 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGAC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGG-CT
* * *
49615625 GATG-CATGTCCCAGACATGGTCTTACATTGGCTCT-CATAAT-GTGG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCT
*
49615671 CGATG-CATGTTCCAGACAT-GTCTTACACTGGC
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGC
49615703 ACACATATAA
Statistics
Matches: 184, Mismatches: 21, Indels: 33
0.77 0.09 0.14
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 49 0.27
47 39 0.21
48 2 0.01
49 31 0.17
50 34 0.18
51 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCT
Found at i:49615694 original size:93 final size:94
Alignment explanation
Indices: 49615433--49615702 Score: 271
Period size: 93 Copynumber: 2.8 Consensus size: 94
49615423 GATAAGTTGC
* * * *
49615433 CGATGCCATGTCCCGGACATGGTCTTACACTGGCTATCACCATCGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAT-GTGG-CGATG-CATGTCCCAG
* * * *
49615498 ACATGGTCTTACACTAGCTCTCGCATATCCATGT
62 ACAT-GTCTTACACTGGCTCTCACATATCCAGGA
* * * * *
49615532 CGATGCCATGTCCCAAACATGGTCTTACACTGACACATC-T-CGTAGCTGATGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATATGTGGC-GATGCATGTCCCAGAC
* *
49615595 ATGTCTTACACTGGCT-T-ACATCTCGAGGA
64 ATGTCTTACACTGGCTCTCACATATCCAGGA
* *
49615624 CGATG-CATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGTCGATGCATGTTCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGG-CGATGCATGTCCCAGAC
49615688 ATGTCTTACACTGGC
64 ATGTCTTACACTGGC
49615703 ACACATATAA
Statistics
Matches: 143, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
90 2 0.01
91 27 0.19
92 12 0.08
93 34 0.24
94 14 0.10
95 15 0.10
96 6 0.04
99 31 0.22
100 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGGCGATGCATGTCCCAGACAT
GTCTTACACTGGCTCTCACATATCCAGGA
Found at i:49616078 original size:30 final size:30
Alignment explanation
Indices: 49616043--49616100 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
49616033 AAATTCACAT
* *
49616043 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
49616073 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
49616101 TGCTCGGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:49625603 original size:40 final size:40
Alignment explanation
Indices: 49625404--49625589 Score: 277
Period size: 40 Copynumber: 4.7 Consensus size: 40
49625394 TTGAATGATG
* * * *
49625404 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
49625444 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49625484 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49625524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49625565 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
49625590 AACGAGTAGC
Statistics
Matches: 136, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 127 0.93
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49630635 original size:40 final size:40
Alignment explanation
Indices: 49630436--49630621 Score: 277
Period size: 40 Copynumber: 4.7 Consensus size: 40
49630426 TTGAATGATG
* * * *
49630436 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
49630476 TCCGGGTTAAGTCCCGAAGCCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49630516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
49630556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
49630597 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
49630622 AACGAGTAGC
Statistics
Matches: 136, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 127 0.93
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49630639 original size:80 final size:80
Alignment explanation
Indices: 49630436--49630654 Score: 266
Period size: 80 Copynumber: 2.8 Consensus size: 80
49630426 TTGAATGATG
** * * * *
49630436 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGGTTAAGTCCCGAAGCCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
49630500 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* **
49630516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
49630581 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* * * *
49630597 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
49630655 TACGTGATTT
Statistics
Matches: 124, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
79 16 0.13
80 99 0.80
81 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:49633613 original size:39 final size:39
Alignment explanation
Indices: 49633570--49633647 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
49633560 AATCAGAGGT
* *
49633570 AAGTATCGTTCCCATGTACTTTAGAACTCAAGAATGCAA
1 AAGTATCATTCCCACGTACTTTAGAACTCAAGAATGCAA
49633609 AAGTATCATTCCCACGTACTTTAGAACTCAAGAATGCAA
1 AAGTATCATTCCCACGTACTTTAGAACTCAAGAATGCAA
49633648 CATCTCAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (39 bp):
AAGTATCATTCCCACGTACTTTAGAACTCAAGAATGCAA
Found at i:49637299 original size:28 final size:28
Alignment explanation
Indices: 49637236--49637417 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
49637226 ATATTAAGTC
*
49637236 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
49637263 CGCACACTTAGTGCTACACAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
49637291 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
49637319 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
49637347 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49637375 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
49637404 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49637418 CAATCTCATG
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
27 20 0.14
28 103 0.73
29 19 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49646261 original size:46 final size:45
Alignment explanation
Indices: 49646118--49646284 Score: 178
Period size: 46 Copynumber: 3.7 Consensus size: 45
49646108 CCGCCCTAAG
* * * *
49646118 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
* * * *
49646163 TGAACTC-GACTCAACTCAACGAGTTCAGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTC-G--GAC-ATTTGCATCCATAA
*
49646209 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
*
49646254 GTGAACTCGGACTCAATTCAACGAGTTCGGA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGA
49646285 TGCTCAACAT
Statistics
Matches: 100, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
43 6 0.06
44 21 0.21
45 10 0.10
46 37 0.37
47 22 0.22
48 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:49648662 original size:15 final size:15
Alignment explanation
Indices: 49648640--49648715 Score: 68
Period size: 15 Copynumber: 5.2 Consensus size: 15
49648630 AAAAAACCGA
49648640 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
49648655 ATACAGAAACCCGA-
1 ATAAAGAAATCCAAG
49648669 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
49648683 AATAAA-AGATCCAGG
1 -ATAAAGAAATCCAAG
*
49648698 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49648713 ATA
1 ATA
49648716 CGATACTATG
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
13 1 0.02
14 20 0.43
15 26 0.55
ACGTcount: A:0.57, C:0.17, G:0.14, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49648673 original size:29 final size:30
Alignment explanation
Indices: 49648622--49648681 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
49648612 TTATGGAAAA
49648622 AAGATAACAAAAAACCGAATAAAGAAATCC
1 AAGATAACAAAAAACCGAATAAAGAAATCC
* *
49648652 AAGAT-ACAGAAACCCGAATAAAGAAATCC
1 AAGATAACAAAAAACCGAATAAAGAAATCC
49648681 A
1 A
49648682 GAATAAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 23 0.82
30 5 0.18
ACGTcount: A:0.60, C:0.18, G:0.12, T:0.10
Consensus pattern (30 bp):
AAGATAACAAAAAACCGAATAAAGAAATCC
Found at i:49648694 original size:14 final size:15
Alignment explanation
Indices: 49648638--49648706 Score: 72
Period size: 14 Copynumber: 4.7 Consensus size: 15
49648628 ACAAAAAACC
49648638 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
49648653 -AGATACAGAAA-CCC
1 GA-ATAAAGAAATCCA
49648667 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
49648682 GAATAAA-AGATCCA
1 GAATAAAGAAATCCA
*
49648696 GGATAAAGAAA
1 GAATAAAGAAA
49648707 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
14 23 0.53
15 20 0.47
ACGTcount: A:0.58, C:0.14, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:49651789 original size:46 final size:46
Alignment explanation
Indices: 49651632--49651804 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
49651622 TAACCGCCCC
* * * *
49651632 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
49651678 TAAATGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * * *
49651726 TCA-CGAACTTGGACTCAACTCAACTAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
49651771 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49651805 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.57
47 25 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:49651796 original size:93 final size:93
Alignment explanation
Indices: 49651637--49651807 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
49651627 GCCCCTAAGT
* *
49651637 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
49651702 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
49651730 GAACTTGGACTCAACTCAACTAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
49651795 CGAGTTCGGATGC
66 CGAGTTCGGATGC
49651808 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49655892 original size:673 final size:673
Alignment explanation
Indices: 49654606--49655952 Score: 2676
Period size: 673 Copynumber: 2.0 Consensus size: 673
49654596 ATTGCTCCAG
*
49654606 CCCGTGGTCAAGGCTGTTAAATAGGCACGGGTGTGTAGTCTCCCTGTGGAAGTCGTGCTTCGATC
1 CCCGTGGTCAAGGCTGTTAAATAGGCACGGGTGTGCAGTCTCCCTGTGGAAGTCGTGCTTCGATC
49654671 CTACCAAATGGACATGGCTGTGTAGCTTACTCGTGCGAGGAAGTCCAGGCCATGTTGATTTCCCA
66 CTACCAAATGGACATGGCTGTGTAGCTTACTCGTGCGAGGAAGTCCAGGCCATGTTGATTTCCCA
49654736 TGTCGGTCCATTTTCTCCGCTTTCGGCCCGTTTTTCGCTCTTTTTACTCTCCTATGCTCACCTAA
131 TGTCGGTCCATTTTCTCCGCTTTCGGCCCGTTTTTCGCTCTTTTTACTCTCCTATGCTCACCTAA
49654801 GTATAAAACATGAAATTAAAGAATTAGGAGCATCGAATTCACCAAATCTAAGGAGAAACCATCCA
196 GTATAAAACATGAAATTAAAGAATTAGGAGCATCGAATTCACCAAATCTAAGGAGAAACCATCCA
49654866 TAAATGTGCTAATCATGGGATAAAAATATGTATGGATTACGGTTTATCAAATACCCCCACACTTA
261 TAAATGTGCTAATCATGGGATAAAAATATGTATGGATTACGGTTTATCAAATACCCCCACACTTA
49654931 AGCGTTTGCTTGTCCTCAAGCAAAAGCCTCAACTCACAATCAAAATAAATTCTTCTCAATTTATA
326 AGCGTTTGCTTGTCCTCAAGCAAAAGCCTCAACTCACAATCAAAATAAATTCTTCTCAATTTATA
49654996 ATCCCTATAAATAATATCTCAAAATAATCCATAAGTAATCATACATTGAAAATTCAACTAAAAGG
391 ATCCCTATAAATAATATCTCAAAATAATCCATAAGTAATCATACATTGAAAATTCAACTAAAAGG
49655061 ACATCAAAGTTTCAAACATTCCAAGTTATGCATTTTATCACGAAAACATAGGTGTCCCCCCTCAT
456 ACATCAAAGTTTCAAACATTCCAAGTTATGCATTTTATCACGAAAACATAGGTGTCCCCCCTCAT
49655126 CTAAGTAATCACCTTTGATCAAAATATCACAGAGTTTAACATCCTCACTAAAGATTCACTCAAAT
521 CTAAGTAATCACCTTTGATCAAAATATCACAGAGTTTAACATCCTCACTAAAGATTCACTCAAAT
49655191 CACTCGAGGTGTTTAAGGACATCAAATAAAGCACTCATTAGTCAATATGAAATGTTATTACTATA
586 CACTCGAGGTGTTTAAGGACATCAAATAAAGCACTCATTAGTCAATATGAAATGTTATTACTATA
49655256 GGCTTGCATGAAAATCAAATCTC
651 GGCTTGCATGAAAATCAAATCTC
49655279 CCCGTGGTCAAGGCTGTTAAATAGGCACGGGTGTGCAGTCTCCCTGTGGAAGTCGTGCTTCGATC
1 CCCGTGGTCAAGGCTGTTAAATAGGCACGGGTGTGCAGTCTCCCTGTGGAAGTCGTGCTTCGATC
*
49655344 CTACCAAATGGACATGGCTGTGTAGCTTACTCGTGTGAGGAAGTCCAGGCCATGTTGATTTCCCA
66 CTACCAAATGGACATGGCTGTGTAGCTTACTCGTGCGAGGAAGTCCAGGCCATGTTGATTTCCCA
49655409 TGTCGGTCCATTTTCTCCGCTTTCGGCCCGTTTTTCGCTCTTTTTACTCTCCTATGCTCACCTAA
131 TGTCGGTCCATTTTCTCCGCTTTCGGCCCGTTTTTCGCTCTTTTTACTCTCCTATGCTCACCTAA
49655474 GTATAAAACATGAAATTAAAGAATTAGGAGCATCGAATTCACCAAATCTAAGGAGAAACCATCCA
196 GTATAAAACATGAAATTAAAGAATTAGGAGCATCGAATTCACCAAATCTAAGGAGAAACCATCCA
49655539 TAAATGTGCTAATCATGGGATAAAAATATGTATGGATTACGGTTTATCAAATACCCCCACACTTA
261 TAAATGTGCTAATCATGGGATAAAAATATGTATGGATTACGGTTTATCAAATACCCCCACACTTA
49655604 AGCGTTTGCTTGTCCTCAAGCAAAAGCCTCAACTCACAATCAAAATAAATTCTTCTCAATTTATA
326 AGCGTTTGCTTGTCCTCAAGCAAAAGCCTCAACTCACAATCAAAATAAATTCTTCTCAATTTATA
49655669 ATCCCTATAAATAATATCTCAAAATAATCCATAAGTAATCATACATTGAAAATTCAACTAAAAGG
391 ATCCCTATAAATAATATCTCAAAATAATCCATAAGTAATCATACATTGAAAATTCAACTAAAAGG
49655734 ACATCAAAGTTTCAAACATTCCAAGTTATGCATTTTATCACGAAAACATAGGTGTCCCCCCTCAT
456 ACATCAAAGTTTCAAACATTCCAAGTTATGCATTTTATCACGAAAACATAGGTGTCCCCCCTCAT
49655799 CTAAGTAATCACCTTTGATCAAAATATCACAGAGTTTAACATCCTCACTAAAGATTCACTCAAAT
521 CTAAGTAATCACCTTTGATCAAAATATCACAGAGTTTAACATCCTCACTAAAGATTCACTCAAAT
49655864 CACTCGAGGTGTTTAAGGACATCAAATAAAGCACTCATTAGTCAATATGAAATGTTATTACTATA
586 CACTCGAGGTGTTTAAGGACATCAAATAAAGCACTCATTAGTCAATATGAAATGTTATTACTATA
49655929 GGCTTGCATGAAAATCAAATCTC
651 GGCTTGCATGAAAATCAAATCTC
49655952 C
1 C
49655953 ACCACTATAT
Statistics
Matches: 672, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
673 672 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.29
Consensus pattern (673 bp):
CCCGTGGTCAAGGCTGTTAAATAGGCACGGGTGTGCAGTCTCCCTGTGGAAGTCGTGCTTCGATC
CTACCAAATGGACATGGCTGTGTAGCTTACTCGTGCGAGGAAGTCCAGGCCATGTTGATTTCCCA
TGTCGGTCCATTTTCTCCGCTTTCGGCCCGTTTTTCGCTCTTTTTACTCTCCTATGCTCACCTAA
GTATAAAACATGAAATTAAAGAATTAGGAGCATCGAATTCACCAAATCTAAGGAGAAACCATCCA
TAAATGTGCTAATCATGGGATAAAAATATGTATGGATTACGGTTTATCAAATACCCCCACACTTA
AGCGTTTGCTTGTCCTCAAGCAAAAGCCTCAACTCACAATCAAAATAAATTCTTCTCAATTTATA
ATCCCTATAAATAATATCTCAAAATAATCCATAAGTAATCATACATTGAAAATTCAACTAAAAGG
ACATCAAAGTTTCAAACATTCCAAGTTATGCATTTTATCACGAAAACATAGGTGTCCCCCCTCAT
CTAAGTAATCACCTTTGATCAAAATATCACAGAGTTTAACATCCTCACTAAAGATTCACTCAAAT
CACTCGAGGTGTTTAAGGACATCAAATAAAGCACTCATTAGTCAATATGAAATGTTATTACTATA
GGCTTGCATGAAAATCAAATCTC
Found at i:49663275 original size:28 final size:29
Alignment explanation
Indices: 49663159--49663263 Score: 137
Period size: 28 Copynumber: 3.7 Consensus size: 29
49663149 ACATACATGC
49663159 ATATGGCCCA-CTAGGCCCAATCTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
* *
49663187 ATATGGCCCATC-AGGCCCAATTCGCATTC
1 ATATGGCCCATCTAGGCCCAA-TCTCATTT
* *
49663216 ATATGGCCCGT-TAGGCCCAGTCTCATTT
1 ATATGGCCCATCTAGGCCCAATCTCATTT
49663244 ATATGGCCCATCT-GGCCCAA
1 ATATGGCCCATCTAGGCCCAA
49663264 ATCACATTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
28 40 0.62
29 25 0.38
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCTCATTT
Found at i:49663518 original size:16 final size:15
Alignment explanation
Indices: 49663486--49663528 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
49663476 GTAGCCAAAC
*
49663486 TTTCGTCTTTTGGCA
1 TTTCGGCTTTTGGCA
*
49663501 TTTTGGCTTTTCGGCA
1 TTTCGGCTTTT-GGCA
49663517 TTTCGGCTTTTG
1 TTTCGGCTTTTG
49663529 TCGATCTACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.05, C:0.19, G:0.23, T:0.53
Consensus pattern (15 bp):
TTTCGGCTTTTGGCA
Found at i:49667046 original size:16 final size:16
Alignment explanation
Indices: 49667027--49667058 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49667017 AATTTTAAGT
49667027 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
49667043 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
49667059 GTGTTACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:49678952 original size:55 final size:55
Alignment explanation
Indices: 49678867--49678976 Score: 193
Period size: 55 Copynumber: 2.0 Consensus size: 55
49678857 ACCTCGGACT
* * *
49678867 CAGCTTGCCTTTTCTGCCAAATCAAGTTACTTTCTTCCACGGTGAGAGTTTCAAA
1 CAGCTTGCATTTTCTGCCAAATCAAATTACTTTCTTCCACGGTAAGAGTTTCAAA
49678922 CAGCTTGCATTTTCTGCCAAATCAAATTACTTTCTTCCACGGTAAGAGTTTCAAA
1 CAGCTTGCATTTTCTGCCAAATCAAATTACTTTCTTCCACGGTAAGAGTTTCAAA
49678977 AACACTTTGT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (55 bp):
CAGCTTGCATTTTCTGCCAAATCAAATTACTTTCTTCCACGGTAAGAGTTTCAAA
Found at i:49686523 original size:50 final size:50
Alignment explanation
Indices: 49686393--49686581 Score: 238
Period size: 50 Copynumber: 3.8 Consensus size: 50
49686383 AGCCGAAGCT
* * * *
49686393 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * * *
49686442 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* * *
49686492 ATCTGATACACGTAGTAGCTTGCACTTAGTACTACACATGCGACTTAA-C
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
* *
49686541 AGTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
49686582 TGTATTCACA
Statistics
Matches: 119, Mismatches: 19, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
49 41 0.34
50 78 0.66
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTAACC
Found at i:49692198 original size:17 final size:17
Alignment explanation
Indices: 49692176--49692211 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
49692166 TTCGCAGACT
49692176 TAACTCACTTATTTGTA
1 TAACTCACTTATTTGTA
49692193 TAACTCACTTATTTGTA
1 TAACTCACTTATTTGTA
49692210 TA
1 TA
49692212 GTCCATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.47
Consensus pattern (17 bp):
TAACTCACTTATTTGTA
Found at i:49704393 original size:40 final size:41
Alignment explanation
Indices: 49704244--49704394 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 41
49704234 TGGATGAAAA
* *
49704244 CCGGGCTAAGTCCCGAAGGCATTTGCA-CTAGTGA--CTAAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGAGTTACTCTAAT
* * *
49704283 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTCTAAT
* *
49704323 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTCTAAT
*
49704363 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
49704395 AGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 29 0.30
40 66 0.68
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTCTAAT
Found at i:49704406 original size:80 final size:79
Alignment explanation
Indices: 49704244--49704394 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
49704234 TGGATGAAAA
* * *
49704244 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCAATTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
*
49704309 GTGAGTTACTAAAT
66 GCGAGTTACTAAAT
** * *
49704323 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCAATTGCACGAGTGA--CTAATCCGGGCTAAGTCCCGAAGGCATTT
49704387 GAGCGAGT
64 GAGCGAGT
49704395 AGTTATATCC
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
79 29 0.47
80 29 0.47
81 4 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCAATTGCACGAGTGACTAATCCGGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACTAAAT
Found at i:49724336 original size:27 final size:27
Alignment explanation
Indices: 49724298--49724417 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
49724288 AGTTAGGGGT
***
49724298 AGTCATTTTACCTCATAACTCCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
49724325 AGTCATTTTACCTCATAAAGGCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
* * *
49724352 TGTCATTTTACCTCATAAGGGCAATAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
* *
49724379 TGTCATTTTACCTCATAAGGGCAAAAC
1 AGTCATTTTACCTCATAAAGGCAAAAC
49724406 TA-TCATTTTACC
1 -AGTCATTTTACC
49724418 AATTTGAGGG
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (27 bp):
AGTCATTTTACCTCATAAAGGCAAAAC
Found at i:49724360 original size:54 final size:54
Alignment explanation
Indices: 49724299--49724417 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
49724289 GTTAGGGGTA
*
49724299 GTCATTTTACCTCATAACTCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
1 GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
* * * * *
49724353 GTCATTTTACCTCATAAGGGCAATACTGTCATTTTACCTCATAAGGGCAAAACT
1 GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
*
49724407 ATCATTTTACC
1 GTCATTTTACC
49724418 AATTTGAGGG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (54 bp):
GTCATTTTACCTCATAACGCCAAAACAGTCATTTTACCTCATAAAGGCAAAACT
Found at i:49725259 original size:23 final size:24
Alignment explanation
Indices: 49725213--49725268 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
49725203 GAGAAAGAGT
*
49725213 ATAGGGAGTCCAAGAATTTAGCTA
1 ATAGGGAGTCCAAGAATTCAGCTA
*
49725237 ATAGGGAGTCC-AGAATTCGGCTA
1 ATAGGGAGTCCAAGAATTCAGCTA
*
49725260 AAAGGGAGT
1 ATAGGGAGT
49725269 GAAAATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.21
Consensus pattern (24 bp):
ATAGGGAGTCCAAGAATTCAGCTA
Found at i:49727230 original size:47 final size:45
Alignment explanation
Indices: 49727036--49727341 Score: 183
Period size: 47 Copynumber: 6.6 Consensus size: 45
49727026 GCGTGTTGAT
* * * * *
49727036 GCATGTCCCAGACATGTCTTACACTAGCAC-AACTCT-TAGCC-AA
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCA-TATATGGCCGAA
* * * *
49727079 TGCGTGTCCCAGACACGTCTTACACTGGCTATCTC-TGTCGA-GGCCGAT
1 -GCATGTCCCAGACATGTCTTACACTGGC--TCTCATAT--ATGGCCGAA
* * * * * * *
49727127 GCATGTCCCAAACATGTCCTACTCTGGCACTCATTTCTGTGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCATATATG-GCCGAA
* * *
49727173 GCCATCTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCTGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATATGGCCGAA
* * * * * *
49727221 GCATGTCCCAGACATATCTTACACTAGCCCTCATCTGGAT-GCTGAT
1 GCATGTCCCAGACATGTCTTACACTGGCTCTCATAT--ATGGCCGAA
* * *
49727267 GCCATGTCCCAGACATGGTCTTACATTGGCTCTCTTAATGTGGCCGAA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-ATATGGCCGAA
49727315 GCATGTCCCAGACATGTCTTACACTGG
1 GCATGTCCCAGACATGTCTTACACTGG
49727342 TGCACAAATC
Statistics
Matches: 202, Mismatches: 41, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
44 25 0.12
45 7 0.03
46 43 0.21
47 82 0.41
48 41 0.20
49 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGGCCGAA
Found at i:49727230 original size:94 final size:94
Alignment explanation
Indices: 49727120--49727341 Score: 286
Period size: 94 Copynumber: 2.4 Consensus size: 94
49727110 TCTCTGTCGA
* * * *
49727120 GGCCGATGCATGTCCCAAACATGTCCTACTCTGGCACTCATTTCT-G-TGCCGATGCCATCTCCC
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCA--TCTGGATGCCGATGCCATCTCCC
49727183 AAACATGGTCTTACACTGGCTCTCATAATAT
64 AAACATGGTCTTACACTGGCTCTCATAATAT
* * * * * * *
49727214 GGCTGAAGCATGTCCCAGACATATCTTACACTAGCCCTCATCTGGATGCTGATGCCATGTCCCAG
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCATCTGGATGCCGATGCCATCTCCCAA
* * *
49727279 ACATGGTCTTACATTGGCTCTCTTAATGT
66 ACATGGTCTTACACTGGCTCTCATAATAT
49727308 GGCCGAAGCATGTCCCAGACATGTCTTACACTGG
1 GGCCGAAGCATGTCCCAGACATGTCTTACACTGG
49727342 TGCACAAATC
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
92 3 0.03
93 1 0.01
94 105 0.96
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GGCCGAAGCATGTCCCAGACATGTCTTACACTGGCACTCATCTGGATGCCGATGCCATCTCCCAA
ACATGGTCTTACACTGGCTCTCATAATAT
Found at i:49738403 original size:40 final size:39
Alignment explanation
Indices: 49738359--49738499 Score: 180
Period size: 40 Copynumber: 3.6 Consensus size: 39
49738349 GCTCCTCGTT
49738359 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATAGTAATTCGCA
* * *
49738399 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-TTATAGTAATTCGCA
*
49738439 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTA-TAGTAAT-TCGCA
49738478 CAAATGCCTTCGGGCTTAGCCC
1 CAAATGCCTTCGGGCTTAGCCC
49738500 AGAATTAGTA
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 40 0.44
40 47 0.52
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATAGTAATTCGCA
Found at i:49738476 original size:39 final size:40
Alignment explanation
Indices: 49738359--49738518 Score: 220
Period size: 39 Copynumber: 4.0 Consensus size: 40
49738349 GCTCCTCGTT
*
49738359 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
49738399 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
49738439 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
49738478 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
49738517 CA
1 CA
49738519 TCTAACAATA
Statistics
Matches: 110, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 63 0.57
40 45 0.41
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:49738477 original size:79 final size:79
Alignment explanation
Indices: 49738359--49738518 Score: 218
Period size: 79 Copynumber: 2.0 Consensus size: 79
49738349 GCTCCTCGTT
* * *
49738359 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTTGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGG-CTTAACCCAG
*
49738424 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
49738439 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGGCTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGCTTAACCCA
*
49738501 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
49738517 CA
1 CA
49738519 TCTAACAATA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
78 26 0.36
79 32 0.44
80 14 0.19
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGCTTAACCCAGA
ATTAGTAACTCGCA
Found at i:49743358 original size:27 final size:27
Alignment explanation
Indices: 49743327--49743504 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49743317 TAAATTGTAC
49743327 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49743354 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49743380 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49743408 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49743436 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49743463 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49743490 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49743505 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49743441 original size:82 final size:81
Alignment explanation
Indices: 49743328--49743483 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49743318 AAATTGTACA
* *
49743328 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49743392 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49743409 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49743474 TGCGAGTTGA
65 TGCGAATTGA
49743484 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49743495 original size:82 final size:81
Alignment explanation
Indices: 49743324--49743504 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49743314 GATTAAATTG
* *
49743324 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49743389 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49743405 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49743469 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49743487 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49743505 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49749483 original size:40 final size:39
Alignment explanation
Indices: 49749439--49749581 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 39
49749429 GCTCCTCGTT
49749439 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTTATAGTAATTCGCA
* *
49749479 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-TTATAGTAATTCGCA
*
49749519 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTTA-TAGTAAT-TCGCA
49749558 CAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGG
49749582 AATTAGTATC
Statistics
Matches: 94, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 42 0.45
40 49 0.52
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGTTATAGTAATTCGCA
Found at i:49749539 original size:79 final size:79
Alignment explanation
Indices: 49749439--49749598 Score: 236
Period size: 79 Copynumber: 2.0 Consensus size: 79
49749429 GCTCCTCGTT
*
49749439 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAACCC
*
49749502 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
*
49749519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGGA
*
49749583 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
49749597 CA
1 CA
49749599 TCTAACAATA
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 26 0.35
79 33 0.45
80 15 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGGA
ATTAGTAACTCGCA
Found at i:49749556 original size:39 final size:40
Alignment explanation
Indices: 49749439--49749598 Score: 238
Period size: 39 Copynumber: 4.0 Consensus size: 40
49749429 GCTCCTCGTT
*
49749439 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
49749479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
49749519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
49749558 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
49749597 CA
1 CA
49749599 TCTAACAATA
Statistics
Matches: 113, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
39 64 0.57
40 47 0.42
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:49756671 original size:28 final size:27
Alignment explanation
Indices: 49756614--49756765 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
49756604 TAAATTGTGC
* *
49756614 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
49756641 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
49756669 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49756696 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
49756724 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49756751 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49756766 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:49756677 original size:55 final size:55
Alignment explanation
Indices: 49756614--49756765 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
49756604 TAAATTGTGC
* *
49756614 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
49756669 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
49756724 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
49756766 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:49764643 original size:28 final size:27
Alignment explanation
Indices: 49764586--49764737 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
49764576 TAAATTGTGC
* *
49764586 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
49764613 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
49764641 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49764668 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
49764696 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
49764723 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49764738 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:49764651 original size:55 final size:55
Alignment explanation
Indices: 49764586--49764737 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
49764576 TAAATTGTGC
* *
49764586 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
49764641 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
49764696 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
49764738 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:49770385 original size:23 final size:23
Alignment explanation
Indices: 49770359--49770432 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 23
49770349 TCTTGAATGT
49770359 ATGAAAATTTAGATATTCATGGC
1 ATGAAAATTTAGATATTCATGGC
* * *
49770382 ATGATAATTCATGA-A---AT-GT
1 ATGAAAATTTA-GATATTCATGGC
49770401 ATGAAAATTTAGATATTCATGGC
1 ATGAAAATTTAGATATTCATGGC
*
49770424 ATGATAATT
1 ATGAAAATT
49770433 CATGAAATGT
Statistics
Matches: 38, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
18 2 0.05
19 11 0.29
20 2 0.05
22 2 0.05
23 19 0.50
24 2 0.05
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
ATGAAAATTTAGATATTCATGGC
Found at i:49770413 original size:42 final size:42
Alignment explanation
Indices: 49770354--49770442 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
49770344 CATGTTCTTG
49770354 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
1 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
49770396 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
1 AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
49770438 AATGT
1 AATGT
49770443 GCTCGAGTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (42 bp):
AATGTATGAAAATTTAGATATTCATGGCATGATAATTCATGA
Found at i:49772959 original size:33 final size:33
Alignment explanation
Indices: 49772911--49772973 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
49772901 TGCCGTAGCG
* *
49772911 GTCTGGGCCTGAGCCCTATTCAGTAACAGTACA
1 GTCTAGGCCTGAGCCCTATACAGTAACAGTACA
* *
49772944 GTCTAGGCCTTAGCCCTATACAGTGACAGT
1 GTCTAGGCCTGAGCCCTATACAGTAACAGT
49772974 GTGGGCCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (33 bp):
GTCTAGGCCTGAGCCCTATACAGTAACAGTACA
Found at i:49773158 original size:26 final size:27
Alignment explanation
Indices: 49773128--49773179 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
49773118 GCTACTAATA
49773128 ACAGTAA-ACATGGCAAAGCCACTAGT
1 ACAGTAATACATGGCAAAGCCACTAGT
* *
49773154 ACAGTAATTACGTGGCAGAGCCACTA
1 ACAGTAA-TACATGGCAAAGCCACTA
49773180 ATACTTCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
28 15 0.68
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
ACAGTAATACATGGCAAAGCCACTAGT
Found at i:49775114 original size:31 final size:32
Alignment explanation
Indices: 49775057--49775118 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
49775047 ATGAAGTCAC
*
49775057 CAGATACATATATTGTGGCTAGGCCACCAGAA
1 CAGATACATATATTGTGGCTAAGCCACCAGAA
*
49775089 CAGATATATATA-TGTGG-TGAAGCCACCAGA
1 CAGATACATATATTGTGGCT-AAGCCACCAGA
49775119 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 1 0.04
31 15 0.56
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATACATATATTGTGGCTAAGCCACCAGAA
Found at i:49775869 original size:27 final size:27
Alignment explanation
Indices: 49775839--49776059 Score: 316
Period size: 27 Copynumber: 8.2 Consensus size: 27
49775829 GGTAAATTGA
49775839 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
49775866 TAATTTTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* ** **
49775893 TAATTTTACGTTACAATGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* **
49775920 TAATTCTACCCTATAGGGGTATTTTGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
49775947 TAATTCTACCTTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
49775974 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
49776001 TAATTCTACCTTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAG
49776028 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
49776055 TAATT
1 TAATT
49776060 TTGCAAATCG
Statistics
Matches: 168, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:49778388 original size:31 final size:32
Alignment explanation
Indices: 49778331--49778392 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
49778321 ATGAAGTCAC
* *
49778331 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
49778363 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
49778393 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:49778415 original size:71 final size:67
Alignment explanation
Indices: 49778338--49778478 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 67
49778328 CACCAGATAT
* * * *
49778338 AGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGAG
1 AGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGAA
*
49778403 GCTGGC
62 GCTGCC
* *
49778409 AGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAAGCTG
1 AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAAGCTG
49778474 CC
66 CC
49778476 AGA
1 AGA
49778479 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
67 39 0.62
71 24 0.38
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.18
Consensus pattern (67 bp):
AGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAAGCTG
CC
Found at i:49778456 original size:27 final size:26
Alignment explanation
Indices: 49778408--49778459 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49778398 GCGAGGCTGG
*
49778408 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
49778434 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
49778460 TTGCAGCGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:49779159 original size:26 final size:27
Alignment explanation
Indices: 49779110--49779301 Score: 282
Period size: 27 Copynumber: 7.2 Consensus size: 27
49779100 GGGTAAATCT
* *
49779110 GTAATACTACTCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
49779137 GTAATTCTACCTTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
49779163 TTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
49779190 GTAATTCTACCTTACAGGGAT-TTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
49779216 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
49779243 GTAATTCTACCTTACAGGGGTATTT-A
1 GTAATTCTACCCTACAGGGGTATTTCA
49779269 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
49779296 GTAATT
1 GTAATT
49779302 TTACAAATCG
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
26 71 0.49
27 75 0.51
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:49779178 original size:53 final size:54
Alignment explanation
Indices: 49779110--49779301 Score: 309
Period size: 53 Copynumber: 3.6 Consensus size: 54
49779100 GGGTAAATCT
* *
49779110 GTAATACTACTCTACAGGGGTATTTCAGTAATTCTACCTTA-AGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
* * *
49779163 TTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGAT-TTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
*
49779216 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTT-A
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
49779269 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
49779302 TTACAAATCG
Statistics
Matches: 129, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 121 0.94
54 8 0.06
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCA
Found at i:49783880 original size:13 final size:13
Alignment explanation
Indices: 49783862--49783887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49783852 ATGCTCGGTC
49783862 GAATTTGAGCCTT
1 GAATTTGAGCCTT
49783875 GAATTTGAGCCTT
1 GAATTTGAGCCTT
49783888 TAACTCTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
GAATTTGAGCCTT
Found at i:49786743 original size:33 final size:33
Alignment explanation
Indices: 49786706--49786771 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
49786696 TGCAGTAACG
* **
49786706 GTCTGGGCCTGAGCCCTATTTAGTAACAGTACA
1 GTCTGGACCTGAGCCCTATACAGTAACAGTACA
* *
49786739 GTCTGGACCTTAGCCCTATACAGTAATAGTACA
1 GTCTGGACCTGAGCCCTATACAGTAACAGTACA
49786772 ATCTCTGCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (33 bp):
GTCTGGACCTGAGCCCTATACAGTAACAGTACA
Found at i:49806311 original size:47 final size:47
Alignment explanation
Indices: 49806257--49806448 Score: 276
Period size: 47 Copynumber: 4.1 Consensus size: 47
49806247 TTAGGATTTT
** * * *
49806257 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49806304 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
49806351 ATGCGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
49806398 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49806445 ATGT
1 ATGT
49806449 CAAATATGTA
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49806778 original size:69 final size:69
Alignment explanation
Indices: 49806667--49806865 Score: 389
Period size: 69 Copynumber: 2.9 Consensus size: 69
49806657 TCCGGGTAAG
49806667 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
49806732 TCTT
66 TCTT
*
49806736 ACCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
49806801 TCTT
66 TCTT
49806805 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATT
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49806866 TTGTCCGGGT
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 128 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (69 bp):
ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
TCTT
Found at i:49806846 original size:106 final size:103
Alignment explanation
Indices: 49806657--49806885 Score: 318
Period size: 106 Copynumber: 2.2 Consensus size: 103
49806647 GGAAATATAT
49806657 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC--GT-AGACCCGATGACTACGTGTG
* *
49806722 GAGATTATGTTCTTACCCGATAACTACGTGTGGAGATTATG
63 GAGATTATGTCCTGACCCGATAACTACGTGTGGAGATTATG
* *
49806763 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTTC-T-TACCCGATGACTACGTGTGGAG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGTAGACCCGATGACTACGTGTGGAG
* *
49806826 ATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
66 ATTATGTCC---T--GACCCGATAACTACGTGTGGAGATTATG
49806869 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
49806886 AACTTTGTGT
Statistics
Matches: 112, Mismatches: 6, Indels: 10
0.88 0.05 0.08
Matches are distributed among these distances:
101 29 0.26
103 1 0.01
104 1 0.01
106 81 0.72
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (103 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGTAGACCCGATGACTACGTGTGGAG
ATTATGTCCTGACCCGATAACTACGTGTGGAGATTATG
Found at i:49806903 original size:37 final size:37
Alignment explanation
Indices: 49806657--49806885 Score: 334
Period size: 37 Copynumber: 6.5 Consensus size: 37
49806647 GGAAATATAT
49806657 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
49806694 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49806731 TTC---T--TACCCGATAACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
49806763 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49806800 TTC---T--TACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
49806832 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
49806869 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
49806886 AACTTTGTGT
Statistics
Matches: 171, Mismatches: 11, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
32 57 0.33
34 2 0.01
35 2 0.01
37 110 0.64
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49807971 original size:12 final size:12
Alignment explanation
Indices: 49807954--49807978 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
49807944 ATGTAAGTGA
49807954 TCTTGATGATTT
1 TCTTGATGATTT
49807966 TCTTGATGATTT
1 TCTTGATGATTT
49807978 T
1 T
49807979 TACATTGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:49808986 original size:49 final size:46
Alignment explanation
Indices: 49808696--49809014 Score: 238
Period size: 47 Copynumber: 6.8 Consensus size: 46
49808686 ATTACTTATG
* * * *
49808696 TGCCAGTGTAAGACATGTCTGGGACATGCATTGGACAC-ATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * *
49808741 GTGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGCGTAGA-GATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* * *
49808789 GTGCCAGCGTAAGATATGTCTGGGACATGCATCGGCCTCGACGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * *
49808836 TAGCTAGTGTAAGACGTGTCTGGGACATGCATCGG-CT-GAAAGTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGATGA
* * * **
49808881 TGCTAGTGTAAGACATGTCCGGGACATGCATCCG-AACGTAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGAT--GA
* ** *
49808928 GAGATAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
*
49808977 TAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
49809015 AACTTATCCC
Statistics
Matches: 221, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 31 0.14
45 4 0.02
46 32 0.14
47 59 0.27
48 34 0.15
49 49 0.22
50 8 0.04
51 4 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Done.