Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 151 of 320
Found at i:49811873 original size:834 final size:829
Alignment explanation
Indices: 49810345--49812842 Score: 3416
Period size: 833 Copynumber: 3.0 Consensus size: 829
49810335 GTTACACTTG
* * * * *
49810345 ATGTTCTTTACTCATCAGGGCTTCCATTAATCTTTCTTGTGATTTCATTCAATTTTCATCTTTAT
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
* * *** *
49810410 GCTTCAAATCTGTCCAACAATT-TTTTCACTTAATTTGCAATCCTGACCCCTTTGGATTTTGTAC
66 GCTTCAAATCTGTCAAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTATAC
*
49810474 AAAATAATGA-TTCCTTAACATACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTT
131 AAAAT-ATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTT
* * * * * *
49810538 GTTCTTTTATAATTTTTTTTGTATTGTTTCCCTTTTAATTCAAACTTGGATTGTTTGAGTTTTGC
195 GTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTTGG
*
49810603 ATGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATC
260 GTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATC
* * *
49810668 TCCACACCACTTTAGTCATTTCCCAAATTTCTCCTCTCTTTCCTTGAATTTGTAGTTCGATTCTT
325 TTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTCTT
** *
49810733 GTTTGTTTGTTTCTAATCTTTCGTTTCATTACTTCCATATCAAGAATCAACAAGAAAAGACGTTC
390 GTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGTTC
* * * *
49810798 TCCCCTTCTTAATACACCACGAACCATTCAAAAACTAGGAAGTTTATTCTTTTCTTATTGCGTCG
455 TCCCCTTCTTAATACACCAAGAACCATT-AAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTCG
49810863 ATTGCTTTTATCACAAAACAATTTTATTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTC
519 ATTGCTTTTATCACAAAACAATTTT-TTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTC
* ** * * * ** * *
49810928 TTTTGATTTCAGATCTAGATTAAAGCCTTCTTTCAGTTCAAGAATTTTTCTTTCTCATCCAAGAA
583 TCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCCAAGAA
* * * * *
49810993 ACCATATCTCAATCGTTCTTGCACTCCTCTTTTCTAACCTCTCTCCTTCTATGTTGTTTGGTTTA
648 ACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTTTA
* *
49811058 CTTTCTCATTTTTTTAATCAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTCGATTCGAC
713 CTTTTTCATTTTTTTAA-CAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTCGAC
* *
49811123 ATCATCTTTTAATCCAAGAATGCTTCAAGTCATCTTAATATACTTGATTCTTC
777 ATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
* * * * *
49811176 ATGTTCTTTACTGGTCAAGCCTTCCATTAATCATTCTTATAATTTCATTCTATTTTGATCTTTTT
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
* * * *
49811241 GCTTCAAATCCGTCAAACAGTTTGTTTTCACTTAATTTGTGGCCCTAACCCTTTTGGATATTT-T
66 GCTTCAAATCTGTCAAACA-TTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGAT-TTTAT
*
49811305 ACAAAATA-GCACTTCCTTAACCTAAC-TGGTCTCATCCAAGAACCCTAATTTGGATTCAATTTC
129 ACAAAATATG-ACTTCCTTAACCT-ACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTC
* *
49811368 CTTGTTCTTTTATAAGTTTATTTGTGTTGATGCCCTTTTAATTCTAACTTAGATTGTTT-ATGTT
192 CTTGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGA-GTT
* * *
49811432 TTGGGTGGGGTTGAACTCCATGATTCCTTAGTCTTGAGAATGCAACAATCTAGTGCTCCTTAGGA
256 TTGGGTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTA-G-
* * * * *
49811497 GACATCTTCACACCACTTTATTCATTTCCCAACTTTCTTTTCTCTATCCTTAAATTTGTAGTTTG
319 GACATCTTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCG
* * * **
49811562 ATTCTTGTCTATTTGTTTTTAATCTTTTATTTCTTTACTTCTGTATCAAGAATCAACAAGAAAAG
384 ATTCTTGTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAG
* * *
49811627 ATGTTCTCCCCTTCTTAATTCACCAAGAACCATTGAAAACTAGGAAGTCTCTTCTTTTCTTATTG
449 ACGTTCTCCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTG
* * *
49811692 TGACGATTGCTTTTATCATAAAACAATTTTGTTATGGCTTAAAAATCCATTCTAACAATCTGTTT
514 TGTCGATTGCTTTTATCACAAAACAATTTT-TTATGGCTTAAAAATCCATTCTAACAATCTATTT
* *
49811757 TCTTCTGTCAATTTTAGATCTAGTTTTAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCC
578 TCTTCTCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCC
* * * *
49811822 AAGAAACCATATCCCAGTGGTTCTTGCACTTCTCTTTGCCCACCTCTCTCCTTCCATGTTGGTTG
643 AAGAAACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTG
* *
49811887 GTGTACTTTTTCATTCTTTTAACCAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGAT
708 GTTTACTTTTTCATTTTTTTAA-CAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGAT
* * *
49811952 TCGACATCATATTTTCATCCAAGAATGCTTTAAATAATCTTAATATACTTGATTCTTC
772 TCGACATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
* * * *
49812010 ATGTTCTTTACTCGCCAGGCCTTCCTTTCATCTTTCTTCTGATTTCATTCAATTTTGATCTTTTA
1 ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTT-
*
49812075 TGCTTCAAATCTGTCTAACCATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTAT
65 TGCTTCAAATCTGTC-AAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTAT
* * *
49812140 ACAGAATTATG-CTTCTTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTTAATTTCC
129 ACA-AAATATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCC
* *
49812204 TAGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTCT
193 TTGTTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTT
* * *
49812269 AGGTGGGGTTCAACTTCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACA
258 GGGTGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACA
* * *
49812334 TCTTCACGCCACTTTAGTCTTTTCCTAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTC
323 TCTTCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTC
* * *
49812399 TTGTTTGTTTATTTCTAATCTTTTATTTCTTTACTTCCATATCAGGAATCAACAAGAAAAGACAT
388 TTGTTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGT
* * *
49812464 TCCCCCCTTCTTAATACACAAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATAGTGTC
453 TCTCCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTC
* * * * * ** * *
49812529 AATTACTTTTACCACAAAATAATTATTTTCTTACTTAAAAATCCATTCTGATAATCTATTTTCTT
518 GATTGCTTTTATCACAAAACAATT-TTTTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTT
* * ** * * *
49812594 ATCTCAATTTTAGAACTAGTTGGAGGCCTTCTTTTGGTTCAAGAATTGTTTC-TTCTCAGCCACG
582 CTCTCAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAA-AAATGTTTCTTTCTCATCCAAG
* * * * * * * * * * *
49812658 AAACCATTTCCCACTCTTTCTTGGACTTCTCTTTGGCTA--TCTCACTTTCCGTGCTATTTGGTT
646 AAACCATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTT
* * * * * * *
49812721 TTCTTTTTC-TTTCTTTTAACAAAAAATCTAATTGGTTTTATTTATTTTGTTTAGATATTTATTT
711 TACTTTTTCATTT-TTTTAAC-AGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTC
*
49812785 GACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTAATATACTTGATTCTTC
774 GACATCATCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
49812841 AT
1 AT
49812843 CTAGAGCCCA
Statistics
Matches: 1461, Mismatches: 186, Indels: 40
0.87 0.11 0.02
Matches are distributed among these distances:
830 3 0.00
831 195 0.13
832 5 0.00
833 501 0.34
834 388 0.27
835 359 0.25
836 9 0.01
837 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.44
Consensus pattern (829 bp):
ATGTTCTTTACTCGTCAGGCCTTCCATTAATCTTTCTTATGATTTCATTCAATTTTGATCTTTTT
GCTTCAAATCTGTCAAACATTTGTTTTCACTTAATTTGCGGCCCTGACCCCTTTGGATTTTATAC
AAAATATGACTTCCTTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTGGATTCAATTTCCTTG
TTCTTTTATAAGTTTATTTGTGTTGTTGCCCTTTTAATTCTAACTTGGATTGTTTGAGTTTTGGG
TGGGGTTGAACTCCATGATTCCTTAATCTTGAGAACGCAACAATCTAATGCTCCTTAGGACATCT
TCACACCACTTTAGTCATTTCCCAACTTTCTTCTCTCTTTCCTTGAATTTGTAGTTCGATTCTTG
TTTGTTTGTTTCTAATCTTTTATTTCTTTACTTCCATATCAAGAATCAACAAGAAAAGACGTTCT
CCCCTTCTTAATACACCAAGAACCATTAAAAACTAGGAAGTCTCTTCTTTTCTTATTGTGTCGAT
TGCTTTTATCACAAAACAATTTTTTATGGCTTAAAAATCCATTCTAACAATCTATTTTCTTCTCT
CAATTTTAGATCTAGTTTAAGGCCTTCTTTTGGTTCAAAAATGTTTCTTTCTCATCCAAGAAACC
ATATCCCAATCGTTCTTGCACTTCTCTTTGCCAACCTCTCTCCTTCCATGTTGTTTGGTTTACTT
TTTCATTTTTTTAACAGAAATCTAATTTGTTTTATTTCTTTTGTTTAGATCTTGATTCGACATCA
TCTTTTCATCCAAGAATGCTTCAAATCATCTTAATATACTTGATTCTTC
Found at i:49826157 original size:27 final size:27
Alignment explanation
Indices: 49826126--49826303 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49826116 TAAATTGTAC
49826126 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49826153 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49826179 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49826207 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49826235 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49826262 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49826289 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49826304 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49826240 original size:82 final size:81
Alignment explanation
Indices: 49826127--49826282 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49826117 AAATTGTACA
* *
49826127 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49826191 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49826208 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49826273 TGCGAGTTGA
65 TGCGAATTGA
49826283 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49826294 original size:82 final size:81
Alignment explanation
Indices: 49826123--49826303 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49826113 GATTAAATTG
* *
49826123 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49826188 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49826204 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49826268 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49826286 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49826304 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49845018 original size:27 final size:27
Alignment explanation
Indices: 49844987--49845164 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
49844977 TAAATTGTAC
49844987 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
49845014 TGCACTAAGTGTGTGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49845040 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49845068 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49845096 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49845123 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49845150 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49845165 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49845101 original size:82 final size:81
Alignment explanation
Indices: 49844988--49845143 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
49844978 AAATTGTACA
* * *
49844988 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGTGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49845052 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49845069 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49845134 TGCGAGTTGA
65 TGCGAATTGA
49845144 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49845155 original size:82 final size:81
Alignment explanation
Indices: 49844984--49845164 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
49844974 GATTAAATTG
* * *
49844984 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGTGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49845049 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49845065 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49845129 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49845147 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49845165 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49849005 original size:8 final size:8
Alignment explanation
Indices: 49848992--49849017 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
49848982 ACTTATCAGT
49848992 TTTTATTA
1 TTTTATTA
49849000 TTTTATTA
1 TTTTATTA
49849008 TTTTATTA
1 TTTTATTA
49849016 TT
1 TT
49849018 CCAAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTATTA
Found at i:49852150 original size:12 final size:12
Alignment explanation
Indices: 49852130--49852159 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
49852120 TCAAGCAGTT
*
49852130 ACACGGCCTAGC
1 ACACAGCCTAGC
49852142 ACACAGCCTAGC
1 ACACAGCCTAGC
49852154 ACACAG
1 ACACAG
49852160 GCGTTTGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.40, G:0.20, T:0.07
Consensus pattern (12 bp):
ACACAGCCTAGC
Found at i:49853051 original size:23 final size:22
Alignment explanation
Indices: 49852977--49853052 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 22
49852967 AGAGCAGCAA
*
49852977 GTTATT-TGTGGAGCTTTTGTG
1 GTTATTCTGTGGAGCCTTTGTG
* *
49852998 GCTTATTATGTGGAGCCTTTATG
1 G-TTATTCTGTGGAGCCTTTGTG
*
49853021 GTGTATTCTGTAGAGCCTTTGTG
1 GT-TATTCTGTGGAGCCTTTGTG
49853044 GTATATTCT
1 GT-TATTCT
49853053 ATAACACCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.02
22 6 0.13
23 39 0.85
ACGTcount: A:0.14, C:0.11, G:0.28, T:0.47
Consensus pattern (22 bp):
GTTATTCTGTGGAGCCTTTGTG
Found at i:49854632 original size:21 final size:21
Alignment explanation
Indices: 49854583--49854624 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
49854573 ATGGGTGAAA
* *
49854583 AAATTTCTACTTGACAAATCT
1 AAATTTTTAGTTGACAAATCT
*
49854604 AAATTTTTAGTTGATAAATCT
1 AAATTTTTAGTTGACAAATCT
49854625 TATTTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (21 bp):
AAATTTTTAGTTGACAAATCT
Found at i:49857042 original size:40 final size:40
Alignment explanation
Indices: 49856980--49857153 Score: 228
Period size: 40 Copynumber: 4.4 Consensus size: 40
49856970 AAGCCAGATA
* * * *
49856980 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
49857019 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
49857059 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
49857099 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
49857139 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
49857154 TCGGTTATCA
Statistics
Matches: 122, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 14 0.11
40 108 0.89
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:49858829 original size:50 final size:50
Alignment explanation
Indices: 49858723--49858876 Score: 276
Period size: 50 Copynumber: 3.1 Consensus size: 50
49858713 TTATATGACT
49858723 AATACTACCTTAATAACAAGCCAATG-CTTTGGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
*
49858772 AATACTACCTTAATAACAAGCCAATGCCTTTCGCTAAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
*
49858822 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTGAATCATAATATTAC
1 AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
49858872 -ATACT
1 AATACT
49858877 CACATTAAAA
Statistics
Matches: 101, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
49 31 0.31
50 70 0.69
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (50 bp):
AATACTACCTTAATAACAAGCCAATGCCTTTGGCTAAATCATAATATTAC
Found at i:49860701 original size:20 final size:18
Alignment explanation
Indices: 49860667--49860703 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
49860657 GCAACTCATA
49860667 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
49860685 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
49860704 ACTTAGTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:49861477 original size:25 final size:25
Alignment explanation
Indices: 49861431--49861480 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
49861421 TATCGTTTTT
* *
49861431 AAAAAAGGTATCGATTATTTTTTAG
1 AAAAAAGGTATCGAATAATTTTTAG
49861456 AAAAAATGGTATC-AATAATTTTTAG
1 AAAAAA-GGTATCGAATAATTTTTAG
49861481 GATTTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (25 bp):
AAAAAAGGTATCGAATAATTTTTAG
Found at i:49861676 original size:20 final size:21
Alignment explanation
Indices: 49861651--49861704 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
49861641 TTGAATCATT
*
49861651 TTAAAATCATTTTGACTTG-G
1 TTAAAATCATTTTAACTTGAG
*
49861671 TTAAAATCATTTTAACTTGATT
1 TTAAAATCATTTTAACTTGA-G
49861693 TTAAAATCATTT
1 TTAAAATCATTT
49861705 CAATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.60
22 12 0.40
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (21 bp):
TTAAAATCATTTTAACTTGAG
Found at i:49861694 original size:31 final size:30
Alignment explanation
Indices: 49861621--49861696 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
49861611 TTTTGATATG
*
49861621 TTAAAATGATTTTAACTTGATTGAATCATT
1 TTAAAATGATTTTAACTTGATTAAATCATT
* * *
49861651 TTAAAATCATTTTGACTTGGTTAAAATCATT
1 TTAAAATGATTTTAACTTGATT-AAATCATT
**
49861682 TTAACTTGATTTTAA
1 TTAAAATGATTTTAA
49861697 AATCATTTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
30 19 0.51
31 18 0.49
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (30 bp):
TTAAAATGATTTTAACTTGATTAAATCATT
Found at i:49862033 original size:14 final size:14
Alignment explanation
Indices: 49861992--49862043 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
49861982 TTATCCTAGA
49861992 AAATTTTTAATTTTTT
1 AAATTTTT--TTTTTT
* *
49862008 -AACTTTATTTTTT
1 AAATTTTTTTTTTT
49862021 AAATTTTTTTTTTT
1 AAATTTTTTTTTTT
49862035 GAAATTTTT
1 -AAATTTTT
49862044 ATAATTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 6 0.20
14 11 0.37
15 13 0.43
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (14 bp):
AAATTTTTTTTTTT
Found at i:49864620 original size:25 final size:21
Alignment explanation
Indices: 49864574--49864614 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
49864564 AATCACATGA
*
49864574 TACAAAAACAACCTAATTATT
1 TACAAAAAAAACCTAATTATT
49864595 TCACAAAAAAAACCTAATTA
1 T-ACAAAAAAAACCTAATTA
49864615 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (21 bp):
TACAAAAAAAACCTAATTATT
Found at i:49870594 original size:3 final size:3
Alignment explanation
Indices: 49870586--49870623 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
49870576 GATTTCTCTT
49870586 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
49870624 GTCTTTTTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:49877907 original size:28 final size:27
Alignment explanation
Indices: 49877875--49877970 Score: 86
Period size: 28 Copynumber: 3.3 Consensus size: 27
49877865 AATCAGAGCT
*
49877875 ATCTGGGCCTTAGCCCATATCAATATTA
1 ATCTGGGCC-TAGCCCATATCAGTATTA
*
49877903 ATCTGGGCCATAGCCTCTTA-CAGTATTAGA
1 ATCTGGGCC-TAGCC-CATATCAGTATT--A
*
49877933 GTATACTGGGCCTAGCCCATATCAGTATCA
1 --AT-CTGGGCCTAGCCCATATCAGTATTA
49877963 ATCTGGGC
1 ATCTGGGC
49877971 GGTAGCCCTA
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
27 6 0.11
28 22 0.39
29 3 0.05
30 2 0.04
31 3 0.05
32 13 0.23
33 7 0.12
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
ATCTGGGCCTAGCCCATATCAGTATTA
Found at i:49877952 original size:60 final size:61
Alignment explanation
Indices: 49877869--49878017 Score: 171
Period size: 60 Copynumber: 2.5 Consensus size: 61
49877859 TTCAGAAATC
* * *
49877869 AGAGCTAT-CTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAG-CCTCTTAC-AGTATT
1 AGAG-TATACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGT-TG
* **
49877930 AGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCGGTAGCCCTATTACAAGTTG
1 AGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTG
* *
49877991 AGA-TATATTGGGCCTTGCCCATATCAA
1 AGAGTATACTGGGCCTAGCCCATATCAA
49878018 CACAGTTGGG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
60 51 0.67
61 22 0.29
62 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (61 bp):
AGAGTATACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTTG
Found at i:49878050 original size:19 final size:20
Alignment explanation
Indices: 49878007--49878052 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
49877997 ATTGGGCCTT
*
49878007 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAATTGG
* *
49878027 GCCCATTTCAATACAATT-G
1 GCCCATATCAACACAATTGG
49878046 GCCCATA
1 GCCCATA
49878053 ATAAAACAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAATTGG
Found at i:49882525 original size:15 final size:15
Alignment explanation
Indices: 49882502--49882539 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
49882492 TCAAATCTTC
*
49882502 TTTTTTTCT-TTTCT
1 TTTTTTTCTCTTCCT
49882516 TTTCTTTTCTCTTCCT
1 TTT-TTTTCTCTTCCT
49882532 TTTTTTTC
1 TTTTTTTC
49882540 ACATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 11 0.52
16 7 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTCTCTTCCT
Found at i:49891257 original size:37 final size:37
Alignment explanation
Indices: 49891197--49891272 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
49891187 TATTACGAAA
* * *
49891197 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
49891234 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
49891271 TC
1 TC
49891273 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:49891471 original size:47 final size:47
Alignment explanation
Indices: 49891393--49891688 Score: 421
Period size: 47 Copynumber: 6.2 Consensus size: 47
49891383 CCCTTCGGGA
* * * * * **
49891393 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
49891440 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
49891487 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
49891534 CTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
49891583 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
49891631 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
49891680 CTTATCACA
1 CTTATCACA
49891689 ATTTAGAATT
Statistics
Matches: 226, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
47 95 0.42
48 38 0.17
49 86 0.38
50 7 0.03
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:49891633 original size:97 final size:95
Alignment explanation
Indices: 49891395--49891688 Score: 428
Period size: 97 Copynumber: 3.1 Consensus size: 95
49891385 CTTCGGGACT
* * * * * * * *
49891395 TATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATA-TATACACT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTATACACT
*
49891459 TTCACATTCATCACATCGGCCATTAAGCCT
66 TTCACATTCATCACATCGGCCATTAAGCCC
** *
49891489 TATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATTTATACAC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA-TTATACAC
49891554 TTTCACATTCATCACATCGGCCATTAAGCCC
65 TTTCACATTCATCACATCGGCCATTAAGCCC
49891585 TATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-TATACA
* *
49891650 CTTTCACATTCATCACATCGGCCATTAGGCCT
64 CTTTCACATTCATCACATCGGCCATTAAGCCC
49891682 TATCACA
1 TATCACA
49891689 ATTTAGAATT
Statistics
Matches: 179, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
94 45 0.25
96 45 0.25
97 89 0.50
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (95 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATTATACACT
TTCACATTCATCACATCGGCCATTAAGCCC
Found at i:49893374 original size:39 final size:39
Alignment explanation
Indices: 49893320--49893397 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
49893310 CTCTCCCTAA
*
49893320 ATCCAAATTCGGCATATTGAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
*
49893359 ATCCAAGTTCGGCATATTCAACAACCCAAATGCTAACCT
1 ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
49893398 CAACGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.37, C:0.29, G:0.10, T:0.23
Consensus pattern (39 bp):
ATCCAAATTCGGCATATTCAACAACCCAAATGCTAACCT
Found at i:49896877 original size:58 final size:58
Alignment explanation
Indices: 49896810--49896985 Score: 316
Period size: 58 Copynumber: 3.0 Consensus size: 58
49896800 AAGGGCAAAG
49896810 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
* * *
49896868 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTAATAATATCATTAAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
*
49896926 AGAGCTTACCCTTAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
1 AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
49896984 AG
1 AG
49896986 CCAAATCCAG
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 111 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (58 bp):
AGAGCTTACCCTCAAGCTTTTGACCAATACGTTTGATAATGTCATTGAATAAGATTAA
Found at i:49898642 original size:15 final size:15
Alignment explanation
Indices: 49898622--49898651 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49898612 CTCCTTTATG
49898622 GAAATGATCTCTAAT
1 GAAATGATCTCTAAT
*
49898637 GAAATGATGTCTAAT
1 GAAATGATCTCTAAT
49898652 CTCAATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (15 bp):
GAAATGATCTCTAAT
Found at i:49901040 original size:115 final size:115
Alignment explanation
Indices: 49900895--49901127 Score: 432
Period size: 115 Copynumber: 2.0 Consensus size: 115
49900885 GGACCAAATT
49900895 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
1 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
*
49900960 -TTTTGATGTTTACCCTTAAGACATGCATCACAAACTTTATCTAATTCAAA
66 CTTTT-ATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
*
49901010 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAGAAACT
1 AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
49901075 CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
66 CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
49901125 AAT
1 AAT
49901128 ATGCTCACTA
Statistics
Matches: 115, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
115 111 0.97
116 4 0.03
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.35
Consensus pattern (115 bp):
AATCTATGTGAATTAGTTGGAGAACTCTACTAGTTGATACATCATTAATAGGTTAAAAAAAAACT
CTTTTATGTTTACCCTTAAGAAATGCATCACAAACTTTATCTAATTCAAA
Found at i:49918615 original size:20 final size:20
Alignment explanation
Indices: 49918592--49918645 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
49918582 AGTTTTTCCC
*
49918592 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
49918612 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
49918632 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
49918646 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:49918627 original size:30 final size:30
Alignment explanation
Indices: 49918592--49918665 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
49918582 AGTTTTTCCC
49918592 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
49918622 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
49918652 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
49918666 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:49918655 original size:20 final size:20
Alignment explanation
Indices: 49918592--49918656 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
49918582 AGTTTTTCCC
* * * *
49918592 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
49918612 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
49918631 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
49918652 AGCTC
1 AGCTC
49918657 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:49920281 original size:12 final size:12
Alignment explanation
Indices: 49920251--49920321 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 12
49920241 TTCAAGTAAC
49920251 AAAAAAA-TCAA
1 AAAAAAATTCAA
49920262 AAAAAAATTCGAA
1 AAAAAAATTC-AA
*
49920275 AAAAAATTTTGATTGAA
1 AAAAAA-----ATTCAA
49920292 AAAAAAATTCAA
1 AAAAAAATTCAA
* *
49920304 AAAAAAAGTGAA
1 AAAAAAATTCAA
49920316 AAAAAA
1 AAAAAA
49920322 TCTAGCAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
11 7 0.14
12 23 0.47
13 8 0.16
17 8 0.16
18 3 0.06
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:49920335 original size:41 final size:41
Alignment explanation
Indices: 49920251--49920337 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 41
49920241 TTCAAGTAAC
* * * *
49920251 AAAAAAATCAAAAAAAAATTCGAAAAAAAATTTTGATTGAAA
1 AAAAAAATCAAAAAAAAAGTCGAAAAAAAATCTAGA-TAAAA
* *
49920293 AAAAAATTCAAAAAAAAAGT-GAAAAAAAATCTAG-CAAAA
1 AAAAAAATCAAAAAAAAAGTCGAAAAAAAATCTAGATAAAA
49920332 AAAAAA
1 AAAAAA
49920338 GAAAAGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
39 9 0.23
41 12 0.31
42 18 0.46
ACGTcount: A:0.71, C:0.06, G:0.07, T:0.16
Consensus pattern (41 bp):
AAAAAAATCAAAAAAAAAGTCGAAAAAAAATCTAGATAAAA
Found at i:49921397 original size:5 final size:6
Alignment explanation
Indices: 49921368--49921455 Score: 52
Period size: 6 Copynumber: 14.3 Consensus size: 6
49921358 CCATTGAGCG
* * * * * ** *
49921368 AGAAAA AGAAAA AGAAAT TGCAAA AGAAAA AGAAAT CGAAAA AGTGAG
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
* *
49921416 AG-AAA AGAAAA TGAAGAAA AGAAAA TTGAAAA AGAAAA AG
1 AGAAAA AGAAAA AG-A-AAA AGAAAA -AGAAAA AGAAAA AG
49921456 TGAAAAAAGA
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
5 3 0.05
6 45 0.76
7 7 0.12
8 4 0.07
ACGTcount: A:0.69, C:0.02, G:0.20, T:0.08
Consensus pattern (6 bp):
AGAAAA
Found at i:49921450 original size:13 final size:13
Alignment explanation
Indices: 49921418--49921473 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
49921408 AAAGTGAGAG
49921418 AAAAGAAAA-TGAA
1 AAAAGAAAATTG-A
49921431 GAAAAGAAAATTGA
1 -AAAAGAAAATTGA
*
49921445 AAAAGAAAAAGTGA
1 AAAAG-AAAATTGA
49921459 AAAA-AGAAATTGA
1 AAAAGA-AAATTGA
49921472 AA
1 AA
49921474 GAGAGCTTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
12 1 0.03
13 13 0.35
14 21 0.57
15 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (13 bp):
AAAAGAAAATTGA
Found at i:49921452 original size:18 final size:18
Alignment explanation
Indices: 49921369--49921455 Score: 77
Period size: 18 Copynumber: 4.7 Consensus size: 18
49921359 CATTGAGCGA
49921369 GAAAAAGAAAAAGAAATT
1 GAAAAAGAAAAAGAAATT
* *
49921387 GCAAAAGAAAAAGAAATC
1 GAAAAAGAAAAAGAAATT
** * *
49921405 GAAAAAGTGAGAGAAA-A
1 GAAAAAGAAAAAGAAATT
*
49921422 GAAAATGAAGAAAAGAAAATT
1 GAAAAAG-A-AAAAG-AAATT
49921443 GAAAAAGAAAAAG
1 GAAAAAGAAAAAG
49921456 TGAAAAAAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
17 6 0.12
18 28 0.54
19 8 0.15
20 4 0.08
21 6 0.12
ACGTcount: A:0.69, C:0.02, G:0.21, T:0.08
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:49921462 original size:15 final size:16
Alignment explanation
Indices: 49921405--49921467 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 16
49921395 AAAAGAAATC
49921405 GAAAAAGTGAGAGAAAA
1 GAAAAAGTGA-AGAAAA
49921422 G-AAAA-TGAAGAAAA
1 GAAAAAGTGAAGAAAA
*
49921436 G-AAAATTG-A-AAAA
1 GAAAAAGTGAAGAAAA
49921449 GAAAAAGTGAA-AAAA
1 GAAAAAGTGAAGAAAA
49921464 GAAA
1 GAAA
49921468 TTGAAAGAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
13 5 0.12
14 18 0.43
15 14 0.33
16 4 0.10
17 1 0.02
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (16 bp):
GAAAAAGTGAAGAAAA
Found at i:49921507 original size:33 final size:33
Alignment explanation
Indices: 49921470--49921532 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
49921460 AAAAGAAATT
49921470 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
49921503 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
49921533 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:49923332 original size:20 final size:20
Alignment explanation
Indices: 49923309--49923362 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
49923299 AGTTTTTCCC
*
49923309 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
49923329 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
49923349 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
49923363 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:49923344 original size:30 final size:30
Alignment explanation
Indices: 49923309--49923382 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
49923299 AGTTTTTCCC
49923309 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
49923339 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
49923369 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
49923383 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:49923372 original size:20 final size:20
Alignment explanation
Indices: 49923309--49923373 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
49923299 AGTTTTTCCC
* * * *
49923309 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
49923329 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
49923348 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
49923369 AGCTC
1 AGCTC
49923374 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:49928549 original size:27 final size:27
Alignment explanation
Indices: 49928518--49928695 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
49928508 TAAATTGTAC
49928518 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49928545 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49928571 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49928599 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
49928627 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49928654 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49928681 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49928696 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49928632 original size:82 final size:81
Alignment explanation
Indices: 49928519--49928674 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
49928509 AAATTGTACA
*
49928519 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
49928583 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49928600 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
49928665 TGCGAGTTGA
65 TGCGAATTGA
49928675 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49928686 original size:82 final size:81
Alignment explanation
Indices: 49928515--49928695 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
49928505 GATTAAATTG
*
49928515 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
49928580 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49928596 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
49928660 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49928678 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49928696 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49933019 original size:20 final size:20
Alignment explanation
Indices: 49932972--49933019 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
49932962 AGTAAGCTCG
49932972 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
49932992 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
49933012 GTTGAGCT
1 GTTGAGCT
49933020 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:49934691 original size:11 final size:12
Alignment explanation
Indices: 49934661--49934692 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
49934651 TTTCACTCTT
49934661 CTCTTTTTCAAA
1 CTCTTTTTCAAA
49934673 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
49934685 TTCTTTTT
1 CTCTTTTT
49934693 TCGCTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:49934707 original size:6 final size:6
Alignment explanation
Indices: 49934696--49934790 Score: 52
Period size: 6 Copynumber: 15.7 Consensus size: 6
49934686 TCTTTTTTCG
* * * **
49934696 CTTTTT CTTTTT C-TTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA
1 CTTTTT CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT
* * * *
49934746 CTTTTT -TGATTT CTTTTT CTTTTC CGTTTT CTTTTT -GTTTT CTTT
1 CTTTTT CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
49934791 CAATTTCTCT
Statistics
Matches: 65, Mismatches: 18, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
5 10 0.15
6 42 0.65
7 10 0.15
8 3 0.05
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:49935879 original size:12 final size:12
Alignment explanation
Indices: 49935862--49935891 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
49935852 TACTTCAAAA
49935862 TTTTTTTTGAAT
1 TTTTTTTTGAAT
49935874 TTTTTTTTGAAT
1 TTTTTTTTGAAT
49935886 TTTTTT
1 TTTTTT
49935892 CAAATTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:49937456 original size:20 final size:20
Alignment explanation
Indices: 49937409--49937456 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
49937399 AGTAAGCTCG
49937409 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
49937429 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
49937449 GTTGAGCT
1 GTTGAGCT
49937457 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:49943242 original size:10 final size:10
Alignment explanation
Indices: 49943227--49943264 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
49943217 TTGGGTTAAG
49943227 ATTGAGCTGA
1 ATTGAGCTGA
49943237 ATTGAGCTCGA
1 ATTGAGCT-GA
49943248 A-TGAGCTGA
1 ATTGAGCTGA
*
49943257 CTTGAGCT
1 ATTGAGCT
49943265 CGAGTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 20 0.80
11 3 0.12
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:49943252 original size:20 final size:20
Alignment explanation
Indices: 49943229--49943275 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
49943219 GGGTTAAGAT
49943229 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
49943249 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
49943269 TGAGCTG
1 TGAGCTG
49943276 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:49947452 original size:20 final size:21
Alignment explanation
Indices: 49947429--49947475 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
49947419 GGGTTAAGAT
49947429 TGAGCTGAA-TTGAGCTCGAA
1 TGAGCTGAACTTGAGCTCGAA
*
49947449 TGAGCT-AACTTGAGCTCGAG
1 TGAGCTGAACTTGAGCTCGAA
49947469 TGAGCTG
1 TGAGCTG
49947476 GAAACGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (21 bp):
TGAGCTGAACTTGAGCTCGAA
Found at i:49947700 original size:15 final size:15
Alignment explanation
Indices: 49947680--49947727 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
49947670 TATCAGATGG
49947680 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
49947695 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
49947709 GTTTATGGATATAAA
1 GTTTATGGATATGAA
49947724 GTTT
1 GTTT
49947728 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:49947714 original size:14 final size:14
Alignment explanation
Indices: 49947674--49947717 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
49947664 GACTCGTATC
49947674 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
49947688 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
49947703 AGATGGGTTTATGG
1 AGATGGGTTTATGG
49947717 A
1 A
49947718 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:49947743 original size:29 final size:29
Alignment explanation
Indices: 49947674--49947733 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
49947664 GACTCGTATC
*
49947674 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
49947703 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
49947732 AG
1 AG
49947734 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:49948750 original size:14 final size:14
Alignment explanation
Indices: 49948708--49948752 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
49948698 TTAAAGAAGC
49948708 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
49948722 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
49948735 AACTCATTTAATTA
1 AACTCATTAAATTA
49948749 AACT
1 AACT
49948753 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:49950169 original size:20 final size:20
Alignment explanation
Indices: 49950146--49950191 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
49950136 CCAGCTCGAA
*
49950146 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
49950166 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
49950186 TTAGCT
1 TTAGCT
49950192 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:49950173 original size:30 final size:30
Alignment explanation
Indices: 49950138--49950211 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
49950128 AGTTTTTCCC
49950138 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
49950168 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
49950198 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
49950212 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:49951825 original size:11 final size:10
Alignment explanation
Indices: 49951796--49951823 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
49951786 TTGGAGTAAC
49951796 AAAAAAAATA
1 AAAAAAAATA
49951806 AAAAAAAATA
1 AAAAAAAATA
49951816 AAAAAAAA
1 AAAAAAAA
49951824 ATTGATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:49951861 original size:13 final size:13
Alignment explanation
Indices: 49951830--49951893 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
49951820 AAAAATTGAT
* *
49951830 TGAAAAAAAGAAT
1 TGAAAAAAAAAAG
*
49951843 TCAAAAAAAAAAG
1 TGAAAAAAAAAAG
49951856 TGAAAAAAAAAA-
1 TGAAAAAAAAAAG
**
49951868 TCGAGCAAAAAAAG
1 T-GAAAAAAAAAAG
49951882 -GAAAGAAAAAAA
1 TGAAA-AAAAAAA
49951894 AGGTGAGCAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
12 3 0.08
13 37 0.93
ACGTcount: A:0.73, C:0.05, G:0.14, T:0.08
Consensus pattern (13 bp):
TGAAAAAAAAAAG
Found at i:49951877 original size:28 final size:26
Alignment explanation
Indices: 49951844--49951910 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 26
49951834 AAAAAGAATT
49951844 CAAAAAAAAAAGTGAAAAAAAAAATCGAG
1 CAAAAAAAAAA--GAAAAAAAAAAT-GAG
**
49951873 CAAAAAAAGGAAAGAAAAAAAAGGTGAG
1 CAAAAAAA--AAAGAAAAAAAAAATGAG
49951901 CAAAAAAAAA
1 CAAAAAAAAA
49951911 TCAAGTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
26 2 0.06
28 11 0.32
29 18 0.53
31 3 0.09
ACGTcount: A:0.73, C:0.06, G:0.16, T:0.04
Consensus pattern (26 bp):
CAAAAAAAAAAGAAAAAAAAAATGAG
Found at i:49951905 original size:14 final size:14
Alignment explanation
Indices: 49951870--49951908 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
49951860 AAAAAAAATC
49951870 GAGCAAAAAAAGGA
1 GAGCAAAAAAAGGA
* * *
49951884 AAGAAAAAAAAGGT
1 GAGCAAAAAAAGGA
49951898 GAGCAAAAAAA
1 GAGCAAAAAAA
49951909 AATCAAGTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.69, C:0.05, G:0.23, T:0.03
Consensus pattern (14 bp):
GAGCAAAAAAAGGA
Found at i:49952944 original size:12 final size:12
Alignment explanation
Indices: 49952932--49953049 Score: 50
Period size: 12 Copynumber: 9.8 Consensus size: 12
49952922 GAAAGAGATT
*
49952932 GAAAAAGAAATT
1 GAAAAAGAAATA
49952944 G--AAAGAAA-A
1 GAAAAAGAAATA
*
49952953 CAAAAAGAAA-A
1 GAAAAAGAAATA
*
49952964 CGAAAAAGAAAAA
1 -GAAAAAGAAATA
**
49952977 GAAATTGCAAA-A
1 GAAAAAG-AAATA
*
49952989 GAAAAAGAAATC
1 GAAAAAGAAATA
** *
49953001 GAAAAAGTGAGA
1 GAAAAAGAAATA
49953013 GAAAAAGAAA-A
1 GAAAAAGAAATA
*
49953024 TGAAGAAAAGAAAATT
1 -G-A-AAAAG-AAATA
49953040 GAAAAAGAAA
1 GAAAAAGAAA
49953050 AAGCGAAAAA
Statistics
Matches: 80, Mismatches: 15, Indels: 22
0.68 0.13 0.19
Matches are distributed among these distances:
10 7 0.09
11 12 0.15
12 41 0.51
13 10 0.12
14 6 0.08
15 4 0.05
ACGTcount: A:0.70, C:0.03, G:0.19, T:0.08
Consensus pattern (12 bp):
GAAAAAGAAATA
Found at i:49952975 original size:18 final size:18
Alignment explanation
Indices: 49952949--49953052 Score: 82
Period size: 18 Copynumber: 5.6 Consensus size: 18
49952939 AAATTGAAAG
*
49952949 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
49952967 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
49952985 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
49953003 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
49953021 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
49953042 AAAAGAAAAAG
1 AAAAGAAAAAG
49953053 CGAAAAAAGA
Statistics
Matches: 66, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
18 47 0.71
19 5 0.08
20 8 0.12
21 6 0.09
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:49952977 original size:6 final size:6
Alignment explanation
Indices: 49952945--49953052 Score: 74
Period size: 6 Copynumber: 17.7 Consensus size: 6
49952935 AAAGAAATTG
* * ** *
49952945 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
49952992 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
49953043 AAAGAA AAAG
1 AAAGAA AAAG
49953053 CGAAAAAAGA
Statistics
Matches: 75, Mismatches: 24, Indels: 7
0.71 0.23 0.07
Matches are distributed among these distances:
5 3 0.04
6 61 0.81
7 7 0.09
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:49953034 original size:14 final size:13
Alignment explanation
Indices: 49953013--49953050 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
49953003 AAAAGTGAGA
49953013 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
49953025 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
49953040 GAAAAAGAAAA
1 GAAAAAGAAAA
49953051 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:49953064 original size:21 final size:21
Alignment explanation
Indices: 49953014--49953064 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
49953004 AAAGTGAGAG
*
49953014 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
49953035 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
49953056 AAAAAGAAA
1 AAAAAGAAA
49953065 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:49953104 original size:33 final size:33
Alignment explanation
Indices: 49953067--49953129 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
49953057 AAAAGAAATT
49953067 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
49953100 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
49953130 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:49956076 original size:20 final size:20
Alignment explanation
Indices: 49956053--49956099 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
49956043 GGGTTAAGAT
*
49956053 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
49956073 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
49956093 TGAGCTG
1 TGAGCTG
49956100 GAAACGAGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:49956447 original size:20 final size:20
Alignment explanation
Indices: 49956424--49956469 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
49956414 CCAGCTCGAA
*
49956424 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
49956444 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
49956464 TTAGCT
1 TTAGCT
49956470 TACTTTAACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:49956460 original size:30 final size:30
Alignment explanation
Indices: 49956426--49956489 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
49956416 AGCTCGAATT
*
49956426 AGCTCACA-TGAGCTTAATTTAGCTCGTTTG
1 AGCTCA-ATTGAGCTTAATTTAACTCGTTTG
* *
49956456 AGCTCAATTTAGCTTACTTTAACTCGTTTG
1 AGCTCAATTGAGCTTAATTTAACTCGTTTG
49956486 AGCT
1 AGCT
49956490 TGGCTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAACTCGTTTG
Found at i:49960206 original size:12 final size:12
Alignment explanation
Indices: 49960180--49960226 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
49960170 TCAGATTTTG
*
49960180 TTTTATTTTTCAA
1 TTTT-TTTTTGAA
49960193 TTTTTTTTTGAA
1 TTTTTTTTTGAA
49960205 TTTTTTTTT--A
1 TTTTTTTTTGAA
49960215 TTTTTTTTTGAA
1 TTTTTTTTTGAA
49960227 ACTTACTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
10 10 0.32
12 17 0.55
13 4 0.13
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:49960208 original size:19 final size:19
Alignment explanation
Indices: 49960165--49960208 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
49960155 ACTATGTTCA
49960165 AATTTTCAGATTTTGTTTT
1 AATTTTCAGATTTTGTTTT
* *
49960184 ATTTTTCA-ATTTTTTTTT
1 AATTTTCAGATTTTGTTTT
49960202 GAATTTT
1 -AATTTT
49960209 TTTTTATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (19 bp):
AATTTTCAGATTTTGTTTT
Found at i:49960210 original size:22 final size:22
Alignment explanation
Indices: 49960185--49960226 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49960175 TTTTGTTTTA
49960185 TTTTTCAATTTTTTTTTGAATT
1 TTTTTCAATTTTTTTTTGAATT
**
49960207 TTTTTTTATTTTTTTTTGAA
1 TTTTTCAATTTTTTTTTGAA
49960227 ACTTACTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTTCAATTTTTTTTTGAATT
Found at i:49962901 original size:10 final size:10
Alignment explanation
Indices: 49962881--49962924 Score: 61
Period size: 10 Copynumber: 4.1 Consensus size: 10
49962871 TAGATTCAAA
49962881 AAAAAAGAAAT
1 AAAAAA-AAAT
49962892 AAAAAAAAAT
1 AAAAAAAAAT
49962902 AAAAAAAAATT
1 AAAAAAAAA-T
49962913 GAAAAAAAAAT
1 -AAAAAAAAAT
49962924 A
1 A
49962925 TGCATACGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 14 0.45
11 8 0.26
12 9 0.29
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:49962908 original size:22 final size:22
Alignment explanation
Indices: 49962880--49962924 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
49962870 GTAGATTCAA
49962880 AAAAAAAGAAAT-AAAAAAAAAT
1 AAAAAAA-AAATGAAAAAAAAAT
*
49962902 AAAAAAAAATTGAAAAAAAAAT
1 AAAAAAAAAATGAAAAAAAAAT
49962924 A
1 A
49962925 TGCATACGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.84, C:0.00, G:0.04, T:0.11
Consensus pattern (22 bp):
AAAAAAAAAATGAAAAAAAAAT
Found at i:49965210 original size:21 final size:19
Alignment explanation
Indices: 49965161--49965221 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 19
49965151 GAAAAGAAGA
49965161 AAAACAAAAAGATGAGTGAT
1 AAAA-AAAAAGATGAGTGAT
49965181 -AAAAAAAAGA-GAGTGATT
1 AAAAAAAAAGATGAGTGA-T
49965199 CAAAAGAAAAAGAAATGAGTGAT
1 -AAAA-AAAAAG--ATGAGTGAT
49965222 GAGATTGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
17 6 0.18
18 8 0.24
19 3 0.09
20 3 0.09
21 6 0.18
23 2 0.06
24 6 0.18
ACGTcount: A:0.61, C:0.03, G:0.21, T:0.15
Consensus pattern (19 bp):
AAAAAAAAAGATGAGTGAT
Found at i:49967073 original size:13 final size:13
Alignment explanation
Indices: 49967055--49967079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49967045 TAACCTACAA
49967055 AATTAAATAACAT
1 AATTAAATAACAT
49967068 AATTAAATAACA
1 AATTAAATAACA
49967080 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:49970258 original size:47 final size:48
Alignment explanation
Indices: 49970189--49970407 Score: 229
Period size: 47 Copynumber: 4.7 Consensus size: 48
49970179 TAAGGTGCCA
* * *
49970189 ATGCCTTGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAAGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCAAGCCG
* **
49970236 ATGCCATGTCCCAAACATGGTCTTACACTAACT-ATCATCTTGTAGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCATC-TCAAGCCG
* *
49970284 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTC-TCGTCTCAATACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCAA-GCCG
* * * ***
49970330 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCAT-CTCAAGCCG
49970378 ATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC
49970408 CAACAATAAC
Statistics
Matches: 144, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
45 2 0.01
46 37 0.26
47 73 0.51
48 31 0.22
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCATCATCTCAAGCCG
Found at i:49970356 original size:94 final size:93
Alignment explanation
Indices: 49970195--49970407 Score: 295
Period size: 94 Copynumber: 2.3 Consensus size: 93
49970185 GCCAATGCCT
*
49970195 TGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAAACATGGTCTT
1 TGTCCCAAACAT-GTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAAACATGGTCTT
**
49970260 ACACTAACTATCATCTTGTAGCCGATGCA
65 ACACTAACTATCATAATGTAGCCGATGCA
* *
49970289 TGTCCCAAACATGTCTTACACTAGCTC-TCGTCTCAA-TACCGATGCCATGTCCCAGACATGGTC
1 TGTCCCAAACATGTCTTACACTAGCTCAT-ATCTCAAGT--CGATGCCATGTCCCAAACATGGTC
** * *
49970352 TTACACTGGCTCTCATAATGTGGCCGATGCA
63 TTACACTAACTATCATAATGTAGCCGATGCA
49970383 TGTCCCAAACATGTCTTACACTAGC
1 TGTCCCAAACATGTCTTACACTAGC
49970408 CAACAATAAC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
92 2 0.02
93 21 0.20
94 84 0.79
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (93 bp):
TGTCCCAAACATGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAAACATGGTCTTA
CACTAACTATCATAATGTAGCCGATGCA
Found at i:49976359 original size:12 final size:12
Alignment explanation
Indices: 49976344--49976400 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
49976334 CAAAAAAATC
49976344 AAAAAAAATTTG
1 AAAAAAAATTTG
49976356 AAAAAAAATTGATTG
1 AAAAAAAA-T--TTG
* *
49976371 AAAAAAAAATTC
1 AAAAAAAATTTG
*
49976383 AAAAAAAA-GTG
1 AAAAAAAATTTG
49976394 AAAAAAA
1 AAAAAAA
49976401 TCGAGCAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 8 0.21
12 18 0.47
13 1 0.03
15 11 0.29
ACGTcount: A:0.72, C:0.02, G:0.09, T:0.18
Consensus pattern (12 bp):
AAAAAAAATTTG
Found at i:49977363 original size:16 final size:16
Alignment explanation
Indices: 49977342--49977379 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
49977332 GTGAGCGAGA
49977342 AAATGAAAAGAAAAAG
1 AAATGAAAAGAAAAAG
49977358 AAATG-AAAGAAAAAG
1 AAATGAAAAGAAAAAG
49977373 AAGATGA
1 AA-ATGA
49977380 GTGTGAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (16 bp):
AAATGAAAAGAAAAAG
Found at i:49977494 original size:17 final size:18
Alignment explanation
Indices: 49977462--49977495 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49977452 AAAAGAGAGT
*
49977462 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
49977480 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
49977496 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:50000608 original size:12 final size:12
Alignment explanation
Indices: 50000586--50000610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50000576 TTTGAAAAAC
50000586 AAAAATAAAATG
1 AAAAATAAAATG
50000598 AAAAATAAAATG
1 AAAAATAAAATG
50000610 A
1 A
50000611 GATTGAGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATAAAATG
Found at i:50000677 original size:30 final size:30
Alignment explanation
Indices: 50000612--50000678 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
50000602 ATAAAATGAG
* *
50000612 ATTGAGACTGAAAAAGAAATTGAAAAAGAT
1 ATTGAGACTGAAAAAGAAATGGAAAAAGAA
* *
50000642 TTTGAGAGTGAAAAA-AAAGTGGAAAAAGAA
1 ATTGAGACTGAAAAAGAAA-TGGAAAAAGAA
50000672 ATTGAGA
1 ATTGAGA
50000679 TAAAAGAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.55, C:0.01, G:0.24, T:0.19
Consensus pattern (30 bp):
ATTGAGACTGAAAAAGAAATGGAAAAAGAA
Found at i:50005809 original size:34 final size:34
Alignment explanation
Indices: 50005766--50005832 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
50005756 GCATGGTAAG
*
50005766 ATTTTATGACCCATTTTTAGTGATTTTTATGTTA
1 ATTTTATGACCCATTTTTAATGATTTTTATGTTA
*
50005800 ATTTTATGACCCGTTTTTAATGATTTTTATGTT
1 ATTTTATGACCCATTTTTAATGATTTTTATGTT
50005833 TTTGAGCTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.12, T:0.57
Consensus pattern (34 bp):
ATTTTATGACCCATTTTTAATGATTTTTATGTTA
Found at i:50008225 original size:17 final size:17
Alignment explanation
Indices: 50008181--50008214 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50008171 TTTCTTTCAT
50008181 ACGAGCTTACTAAGCTA
1 ACGAGCTTACTAAGCTA
50008198 ACGAGCTTACTAAGCTA
1 ACGAGCTTACTAAGCTA
50008215 TATAGCTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (17 bp):
ACGAGCTTACTAAGCTA
Found at i:50013740 original size:21 final size:21
Alignment explanation
Indices: 50013714--50013753 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
50013704 GAGGAGAAAG
*
50013714 TGAAAGTAA-TTCGTGATTGCT
1 TGAAAGCAATTTCG-GATTGCT
50013735 TGAAAGCAATTTCGGATTG
1 TGAAAGCAATTTCGGATTG
50013754 ATAGAAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
TGAAAGCAATTTCGGATTGCT
Found at i:50019717 original size:26 final size:26
Alignment explanation
Indices: 50019679--50019754 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
50019669 ACATATTTTC
* *
50019679 TCAAAATTTTACTAGAGGCAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* *
50019705 TGAAAATTTTACTAGGGGTAAAATTG
1 TCAAAATTTTACTAGGGGTAAAATCG
*
50019731 TCAAAATTTTGCTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
50019755 AGGGATAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:50023151 original size:30 final size:30
Alignment explanation
Indices: 50023094--50023152 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
50023084 CCAAAATCAT
* *
50023094 ACTTTTACAAATTTTCATTTTTACCCCTAA
1 ACTTTTACAAATTTGCATATTTACCCCTAA
*
50023124 ACTTTTACATATTTGCA-ATTTAGCCCCTA
1 ACTTTTACAAATTTGCATATTTA-CCCCTA
50023153 GGCACGTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.44
Consensus pattern (30 bp):
ACTTTTACAAATTTGCATATTTACCCCTAA
Found at i:50036213 original size:39 final size:39
Alignment explanation
Indices: 50036169--50036246 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
50036159 ATAACTGAAA
50036169 ATCAGAATAATCAGCTACCTTCTATAGTTGCCACAAATC
1 ATCAGAATAATCAGCTACCTTCTATAGTTGCCACAAATC
** * *
50036208 ATCAGAATAATCAGCTAGTTTTTGTAGTTGCCACAAATC
1 ATCAGAATAATCAGCTACCTTCTATAGTTGCCACAAATC
50036247 CTTCTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.31
Consensus pattern (39 bp):
ATCAGAATAATCAGCTACCTTCTATAGTTGCCACAAATC
Found at i:50039954 original size:49 final size:47
Alignment explanation
Indices: 50039856--50040002 Score: 224
Period size: 47 Copynumber: 3.1 Consensus size: 47
50039846 TTAGGATTCT
* * *
50039856 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
50039903 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
50039952 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50039999 ATGT
1 ATGT
50040003 ATATATGTGA
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
46 1 0.01
47 46 0.50
49 45 0.49
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50040006 original size:30 final size:30
Alignment explanation
Indices: 50039970--50040032 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
50039960 AATGTGAAAG
50039970 TGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTATATATGTGATAAGGCCTAATGGCCGA
50040000 TGTATATATGTGATAAGGCCTAATGGCCGA
1 TGTATATATGTGATAAGGCCTAATGGCCGA
50040030 TGT
1 TGT
50040033 GATGAATGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.32
Consensus pattern (30 bp):
TGTATATATGTGATAAGGCCTAATGGCCGA
Found at i:50040018 original size:126 final size:127
Alignment explanation
Indices: 50039877--50040280 Score: 514
Period size: 126 Copynumber: 3.1 Consensus size: 127
50039867 GTGAACATGC
*
50039877 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGC
50039942 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT-
66 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50040003 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGC
*
50040068 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTG
66 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
** * * *
50040130 ATGA-ATGTGA-AAGTGTATATATATGATAAGGCCTAATGGCCGATG--TGATGAATGTGAAAGT
1 AT-ATATGTGATAAG-G----CCTA--AT--GGCC-GAT-G-TGATGAATG-TGAAAGT----GT
* *
50040191 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
48 ATATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
50040256 CTAATGGCCGATGTG
113 CTAATGGCCGATGTG
50040271 ATGA-ATGTGA
1 AT-ATATGTGA
50040281 AAGTGTATAT
Statistics
Matches: 249, Mismatches: 10, Indels: 23
0.88 0.04 0.08
Matches are distributed among these distances:
126 127 0.51
127 9 0.04
128 1 0.00
131 2 0.01
133 2 0.01
135 4 0.02
136 4 0.02
137 7 0.03
138 4 0.02
141 89 0.36
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (127 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGC
CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:50040029 original size:77 final size:78
Alignment explanation
Indices: 50039925--50040081 Score: 271
Period size: 77 Copynumber: 2.0 Consensus size: 78
50039915 TGAAAGTGTA
50039925 TATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT-ATGTGATAAGGC
1 TATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGC
*
50039989 CTAATGGCCGATG
66 CTAATAGCCGATG
* *
50040002 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGG
1 TATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA-ATGTGATAAGG
50040067 CCTAATAGCCGATG
65 CCTAATAGCCGATG
50040081 T
1 T
50040082 GATGAATGTG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
77 50 0.67
79 25 0.33
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (78 bp):
TATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAATGTGATAAGGC
CTAATAGCCGATG
Found at i:50040053 original size:47 final size:47
Alignment explanation
Indices: 50040000--50040441 Score: 740
Period size: 47 Copynumber: 9.4 Consensus size: 47
50039990 TAATGGCCGA
50040000 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
50040047 TGTATATACATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
50040096 TGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
50040143 TGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
50040190 TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
50040237 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
50040284 TGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
50040331 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
50040378 TGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
50040425 TGTATAAAGGTGATAAG
1 TGTATATATGTGATAAG
50040442 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 326 0.88
49 46 0.12
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:50040610 original size:37 final size:37
Alignment explanation
Indices: 50040560--50040712 Score: 243
Period size: 37 Copynumber: 4.1 Consensus size: 37
50040550 CCGAGCTCTA
*
50040560 AAGACCCGATGACTACGTGTGGGGATTTTGTCCCGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
50040597 AAGACCCGATGACTACGTGTGGGGATTTCGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
50040634 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
50040671 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
50040708 AAGAC
1 AAGAC
50040713 TTCGTAATAA
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 107 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:50042626 original size:43 final size:43
Alignment explanation
Indices: 50042578--50042723 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
50042568 TTGGTTTTCA
50042578 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
50042621 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
50042664 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
50042707 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
50042724 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:50042740 original size:29 final size:29
Alignment explanation
Indices: 50042705--50042778 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
50042695 GTTGTGAGAT
* *
50042705 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50042734 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
50042763 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50042779 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50043311 original size:40 final size:40
Alignment explanation
Indices: 50043089--50043292 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
50043079 TTGAATGATG
* * * *
50043089 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
*
50043129 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
50043169 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
50043209 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAATGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * *
50043249 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
50043289 TCCG
1 TCCG
50043293 AGCTAGGTCT
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
40 133 0.90
41 8 0.05
42 7 0.05
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:50046726 original size:47 final size:47
Alignment explanation
Indices: 50046675--50047136 Score: 719
Period size: 47 Copynumber: 9.7 Consensus size: 47
50046665 TTAGGATTCT
* * *
50046675 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
50046722 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
50046771 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
50046818 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
50046867 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
50046914 ATGTGATGAATGTGAAAGTGTATATATGTCATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50046961 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
50047008 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
50047055 ATGTGATGAATGTGAAAGTGTATATATCTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
50047102 ACGTGATGGATGTGAAAGTGTATAAAGGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50047137 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 24, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 294 0.76
49 91 0.24
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50047305 original size:37 final size:37
Alignment explanation
Indices: 50047255--50047370 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
50047245 CCGAGCTCTA
50047255 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
**
50047292 AAGACCCGATGACTACGTGTGGGGATTTCATCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
50047329 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
50047366 AAGAC
1 AAGAC
50047371 TTCGTAATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:50056093 original size:5 final size:6
Alignment explanation
Indices: 50056054--50056111 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
50056044 TTTTATATTC
** * * *
50056054 TTTTAT TTTTAT TTTTCC TATTAGT TTTTAT TTTTAT TTTTCT ATTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
*
50056103 TTGTAT TTT
1 TTTTAT TTT
50056112 CCTAGACTTT
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
6 35 0.90
7 4 0.10
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:50063757 original size:28 final size:29
Alignment explanation
Indices: 50063723--50063777 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
50063713 ATATAAAATT
* *
50063723 TGTAATTTAT-TAAAATAATTTTATTTCA
1 TGTAATTAATGTAAAATAATATTATTTCA
50063751 TGTAATTAATGTAAAATAATATTATTT
1 TGTAATTAATGTAAAATAATATTATTT
50063778 AAAATAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (29 bp):
TGTAATTAATGTAAAATAATATTATTTCA
Found at i:50063785 original size:29 final size:28
Alignment explanation
Indices: 50063725--50063785 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
50063715 ATAAAATTTG
* * * **
50063725 TAATTTATTAAAATAATTTTATTTCATG
1 TAATTAATTAAAATAATATTATTTAAAA
50063753 TAATTAATGTAAAATAATATTATTTAAAA
1 TAATTAAT-TAAAATAATATTATTTAAAA
50063782 TAAT
1 TAAT
50063786 AAATAATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (28 bp):
TAATTAATTAAAATAATATTATTTAAAA
Found at i:50065207 original size:19 final size:17
Alignment explanation
Indices: 50065171--50065204 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
50065161 TAAATTGGAA
50065171 ATGAAAATAATTAAAAG
1 ATGAAAATAATTAAAAG
50065188 ATGATAAATAATTAAAA
1 ATGA-AAATAATTAAAA
50065205 AGAGATTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (17 bp):
ATGAAAATAATTAAAAG
Found at i:50067953 original size:13 final size:13
Alignment explanation
Indices: 50067935--50067959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50067925 TAAACCGATC
50067935 ACATGATAAACAG
1 ACATGATAAACAG
50067948 ACATGATAAACA
1 ACATGATAAACA
50067960 TGTCGTTAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (13 bp):
ACATGATAAACAG
Found at i:50068023 original size:34 final size:33
Alignment explanation
Indices: 50067970--50068076 Score: 115
Period size: 34 Copynumber: 3.2 Consensus size: 33
50067960 TGTCGTTAGC
*
50067970 TACTAAATTGATTTGATTAAAGCATATTATTTGA
1 TACTAAATTGA-TTAATTAAAGCATATTATTTGA
* *
50068004 TACTGAATTGATCTAATTAAAGCATATTATTTGG
1 TACTAAATTGAT-TAATTAAAGCATATTATTTGA
* ** * *
50068038 TACTTAATTGATTTTTTATAAGCATATTAATTGC
1 TACTAAATTGATTAATTA-AAGCATATTATTTGA
50068072 TACTA
1 TACTA
50068077 TTTCGATATG
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
33 5 0.08
34 57 0.92
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (33 bp):
TACTAAATTGATTAATTAAAGCATATTATTTGA
Found at i:50068231 original size:22 final size:22
Alignment explanation
Indices: 50068206--50068247 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
50068196 GGTATATCCA
*
50068206 CACCATTGGAGTAGTTTATCTG
1 CACCATTGGAGCAGTTTATCTG
* *
50068228 CACCGTTTGAGCAGTTTATC
1 CACCATTGGAGCAGTTTATC
50068248 CACACTATTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (22 bp):
CACCATTGGAGCAGTTTATCTG
Found at i:50068329 original size:62 final size:63
Alignment explanation
Indices: 50068254--50068401 Score: 196
Period size: 62 Copynumber: 2.4 Consensus size: 63
50068244 TATCCACACT
*
50068254 ATTGAGTGATTTATCCACACCATATTA-ACAACTTTTATCTGCAAACCCATTGTGCATTCA-AA
1 ATTGAGTGGTTTATCCACACCATATTAGA-AACTTTTATCTGCAAACCCATTGTGCATTCATAA
* * *
50068316 ATTGAGTGGTTTATCTATA-CAGTATTAGAAACTTTTATCTGCAAACCCATTTTGCATTCATAA
1 ATTGAGTGGTTTATCCACACCA-TATTAGAAACTTTTATCTGCAAACCCATTGTGCATTCATAA
**
50068379 CCT-AGTGGTTTATCCACACCATA
1 ATTGAGTGGTTTATCCACACCATA
50068402 CAAGTAGTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
61 2 0.03
62 66 0.89
63 6 0.08
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (63 bp):
ATTGAGTGGTTTATCCACACCATATTAGAAACTTTTATCTGCAAACCCATTGTGCATTCATAA
Found at i:50071865 original size:20 final size:19
Alignment explanation
Indices: 50071842--50071906 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 19
50071832 AGTGGTATAC
*
50071842 TTTCATAATTTATGATATTT
1 TTTCATAATTT-TGGTATTT
*
50071862 TTTCATAATATTGGTATATT
1 TTTCATAATTTTGGTAT-TT
50071882 TTT-ATAATTTTTGGTATTT
1 TTTCATAA-TTTTGGTATTT
50071901 TTTCAT
1 TTTCAT
50071907 TTTTTTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62
Consensus pattern (19 bp):
TTTCATAATTTTGGTATTT
Found at i:50072271 original size:20 final size:20
Alignment explanation
Indices: 50072232--50072456 Score: 105
Period size: 20 Copynumber: 11.6 Consensus size: 20
50072222 TTCCTCAAAT
** *
50072232 TTTTTAGTATTCCCTTATAA
1 TTTTTAGTATTTTCTCATAA
50072252 TTTTTAGTATTTTCTCATAA
1 TTTTTAGTATTTTCTCATAA
* * * *
50072272 TTTCTGGTA-TTACAACAT-A
1 TTTTTAGTATTTTC-TCATAA
* * **
50072291 TTTTTTGTA-CTTCT--TTT
1 TTTTTAGTATTTTCTCATAA
*
50072308 TTTTTA-TA-TTCCTTCATAA
1 TTTTTAGTATTTTC-TCATAA
* *
50072327 CTTTTTTGTACTTTCTCATAAA
1 -TTTTTAGTATTTTCTCAT-AA
*
50072349 TTTTT-GTATTCTCTCATAA
1 TTTTTAGTATTTTCTCATAA
* *
50072368 TTTTTGGTAATTTCT-A-AA
1 TTTTTAGTATTTTCTCATAA
50072386 TTTTTAGTATTTTCTCATAA
1 TTTTTAGTATTTTCTCATAA
* ** *
50072406 TTTTTTGTATTCCCTCAT-G
1 TTTTTAGTATTTTCTCATAA
* *
50072425 TTTTTGGTACTTTT-TCTTAA
1 TTTTTAGTA-TTTTCTCATAA
*
50072445 TTTTTGGTATTT
1 TTTTTAGTATTT
50072457 GTGTAACACC
Statistics
Matches: 156, Mismatches: 35, Indels: 29
0.71 0.16 0.13
Matches are distributed among these distances:
16 5 0.03
17 6 0.04
18 15 0.10
19 37 0.24
20 77 0.49
21 11 0.07
22 5 0.03
ACGTcount: A:0.21, C:0.13, G:0.07, T:0.59
Consensus pattern (20 bp):
TTTTTAGTATTTTCTCATAA
Found at i:50072400 original size:58 final size:58
Alignment explanation
Indices: 50072328--50072456 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 58
50072318 CCTTCATAAC
* * *
50072328 TTTTTTGTACTTTCTCATAAATTTTTGTATTCTCTCATAATTTTTGGTA-ATTTCTAAA
1 TTTTTAGTATTTTCTCATAAATTTTTGTATTCCCTCAT-ATTTTTGGTACATTTCTAAA
* * * *
50072386 TTTTTAGTATTTTCTCATAATTTTTTGTATTCCCTCATGTTTTTGGTACTTTTTCTTAA
1 TTTTTAGTATTTTCTCATAAATTTTTGTATTCCCTCATATTTTTGGTAC-ATTTCTAAA
*
50072445 TTTTTGGTATTT
1 TTTTTAGTATTT
50072457 GTGTAACACC
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 9 0.15
58 34 0.56
59 18 0.30
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.60
Consensus pattern (58 bp):
TTTTTAGTATTTTCTCATAAATTTTTGTATTCCCTCATATTTTTGGTACATTTCTAAA
Found at i:50078129 original size:33 final size:33
Alignment explanation
Indices: 50078087--50078152 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
50078077 GTCCATTCAG
50078087 ATCACTAGACTCAATTCAAATTATCTTATCATT
1 ATCACTAGACTCAATTCAAATTATCTTATCATT
* **
50078120 ATCACTAGACTTAATTTGAATTATCTTATCATT
1 ATCACTAGACTCAATTCAAATTATCTTATCATT
50078153 CTTACACCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (33 bp):
ATCACTAGACTCAATTCAAATTATCTTATCATT
Found at i:50080776 original size:43 final size:43
Alignment explanation
Indices: 50080659--50081059 Score: 567
Period size: 43 Copynumber: 9.4 Consensus size: 43
50080649 CCAAGGTGCT
*
50080659 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
** * * *
50080701 GATGGT-CTAGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* *
50080743 GATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* *
50080786 GATGGTGGCCGAGGTTCCCGCACGACCAGGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* * *
50080829 GATGGTGCCCGAGGATCCCGCATGACCAGGGGCCTAGATTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
*
50080872 GATGGT-CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* * *
50080914 GATGGTGTCCGA-GCTTCCGTACGACCAGGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* *
50080956 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
* **
50080999 GATGGTGGCCGAGGCTCCTACACGACCAGGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
*
50081042 GATGGTGTCCGAGGCTCC
1 GATGGTGCCCGAGGCTCC
50081060 TGCATATCCA
Statistics
Matches: 322, Mismatches: 33, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
41 28 0.09
42 92 0.29
43 202 0.63
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.16
Consensus pattern (43 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCC
Found at i:50080950 original size:170 final size:170
Alignment explanation
Indices: 50080659--50081107 Score: 582
Period size: 170 Copynumber: 2.6 Consensus size: 170
50080649 CCAAGGTGCT
* * ** *
50080659 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTCTAGAGGCTCTCGCACG
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGTTGCCGATGGTCCCGAGGCTCCCGCACG
50080724 ACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGAT
66 ACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGAT
* * *
50080789 GGTGGCCGAGGTTCCCGCACGACCAGGGGCCTAGGTTGCC
131 GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* *
50080829 GATGGTGCCCGAGGATCCCGCATGACCAGGGGCCTAGATTGCCGATGGTCCCGAGGCTCCCGCAC
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG-TTGCCGATGGTCCCGAGGCTCCCGCAC
* * * *
50080894 GACCAAGGGCCTAGGTTGCCGATGGTGTCCGA-GCT-TCCGTACGACCAGGGGCCTAGGTTGCCG
65 GACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCT-CGCACGACCAGGGGCCTAGGGTGCCG
*
50080957 ATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
129 ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* ** * *
50080999 GATGGTGGCCGAGGCTCCTACACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTA-GTTGCCGATGGT-CCCGAGGCTCCCGCA
* * * * * *
50081064 -TATCCAA-GGCACCAAGGTGCCGATGCTGCTCGAGGCTCTTGCAC
64 CGA-CCAAGGGC-CTAGGGTGCCGATGGTGCCCGAGGCTCTCGCAC
50081108 CACTGACGTC
Statistics
Matches: 240, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
169 1 0.00
170 145 0.60
171 87 0.36
172 6 0.03
173 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.17
Consensus pattern (170 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGTTGCCGATGGTCCCGAGGCTCCCGCACG
ACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGGTGCCGAT
GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
Found at i:50081085 original size:43 final size:42
Alignment explanation
Indices: 50080659--50081107 Score: 475
Period size: 43 Copynumber: 10.5 Consensus size: 42
50080649 CCAAGGTGCT
*
50080659 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCC
1 GATGGTG-CCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* *
50080701 GATGGT-CTAGAGGCT-CTCGCACGACCAAGGGCCTAGGGTGCC
1 GATGGTGC-CGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCC
* *
50080743 GATGGTGCCCGAGGCT-CTCGCACGACCAGGGGCCTAGGGTGCC
1 GATGGTG-CCGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCC
* * *
50080786 GATGGTGGCCGAGGTTCCCGCACGACCAGGGGCCTAGGTTGCC
1 GATGGT-GCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* * * * *
50080829 GATGGTGCCCGAGGATCCCGCATGACCAGGGGCCTAGATTGCC
1 GATGGTG-CCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* *
50080872 GATGGTCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTGCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* *
50080914 GATGGTGTCCGA-GCTTCC-GTACGACCAGGGGCCTAGGTTGCC
1 GATGGTG-CCGAGGC-TCCTGCACGACCAAGGGCCTAGGTTGCC
50080956 GATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGGTTGCC
1 GATGGTG-CCGAGGCTCCT-GCACGACCAAGGGCCTAGGTTGCC
* *
50080999 GATGGTGGCCGAGGCTCCTACACGACCAGGGGCCTAGGTTGCC
1 GATGGT-GCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
* * *
50081042 GATGGTGTCCGAGGCTCCTGCA-TATCCAAGGCACCAAGG-TGCC
1 GATGGTG-CCGAGGCTCCTGCACGA-CCAAGG-GCCTAGGTTGCC
* *
50081085 GATGCTGCTCGAGGCTCTTGCAC
1 GATGGTGC-CGAGGCTCCTGCAC
50081108 CACTGACGTC
Statistics
Matches: 357, Mismatches: 30, Indels: 38
0.84 0.07 0.09
Matches are distributed among these distances:
40 2 0.01
41 26 0.07
42 93 0.26
43 225 0.63
44 11 0.03
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.17
Consensus pattern (42 bp):
GATGGTGCCGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCC
Done.