Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 152 of 320
Found at i:50081087 original size:213 final size:213
Alignment explanation
Indices: 50080641--50081101 Score: 655
Period size: 213 Copynumber: 2.2 Consensus size: 213
50080631 CTAAGCACAA
*
50080641 ACCAA-GCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATG
1 ACCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATG
50080705 GTCTAGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACC
66 GTCTAGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACC
* * *
50080770 AGGGGCCTAGGGTGCCGATGGTGGCCGAGGTTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGT
131 AAGGGCCTAGGGTGCCGATGGTGGCCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGATGGT
50080835 GCCCGAGGATCCCGCATG
196 GCCCGAGGATCCCGCATG
** * *
50080853 ACC-AGGGGCCTAGATTGCCGATGGT-CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA
1 ACCAAGGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGA
* * * * *
50080916 TGGTGTCCGA-GCT-TCCGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCAC
64 TGGTCT-AGAGGCTCT-CGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCAC
* *
50080979 GACCAAGGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCTACACGACCAGGGGCCTAGGTTGCCGA
127 GACCAAGGGCCTAGGGTGCCGATGGTGGCCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGA
* * *
50081044 TGGTGTCCGAGGCTCCTGCAT-
192 TGGTGCCCGAGGATCCCGCATG
* *
50081065 ATCCAAGGCACCAAGGTGCCGATGCTGCTCGAGGCTC
1 A-CCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTC
50081102 TTGCACCACT
Statistics
Matches: 217, Mismatches: 24, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
211 1 0.00
212 41 0.19
213 157 0.72
214 18 0.08
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.16
Consensus pattern (213 bp):
ACCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATG
GTCTAGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCGCACGACC
AAGGGCCTAGGGTGCCGATGGTGGCCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGATGGT
GCCCGAGGATCCCGCATG
Found at i:50081888 original size:58 final size:59
Alignment explanation
Indices: 50081798--50081918 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
50081788 GGGAGGGACA
* *
50081798 GGGACGATTCATTCATTGTTGGGTACCGAACATGCAACGGTATCTGAATTCTAGC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
* * *
50081856 GGGACGGTTCATTCATTATTGGGTACTGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
50081915 GGGA
1 GGGA
50081919 TTGGGGAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCTGAATTCTACCTTTT
Found at i:50082006 original size:24 final size:24
Alignment explanation
Indices: 50081953--50082006 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
50081943 TTTGTATATC
* *
50081953 CCGGGATGGATCACCGGATCATCG
1 CCGGGATGGATCACCGGAGCACCG
* **
50081977 CTGGGATGGATCGTCGGAGCACCG
1 CCGGGATGGATCACCGGAGCACCG
50082001 CCGGGA
1 CCGGGA
50082007 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.19, C:0.28, G:0.39, T:0.15
Consensus pattern (24 bp):
CCGGGATGGATCACCGGAGCACCG
Found at i:50093032 original size:43 final size:43
Alignment explanation
Indices: 50092985--50093851 Score: 714
Period size: 43 Copynumber: 20.3 Consensus size: 43
50092975 CCCTGCTGCT
* * * *
50092985 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGACCTAGGTTGCCGATGGTGTC
* * * *
50093028 CGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCAATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-ACCTAGGTTGCCGATGGTGTC
* * *
50093071 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
** * *
50093114 CGAAGGCTCTGGCACGACCAAGGGCCTAGGTTGCCGATCGTGTC
1 CG-AGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * *
50093158 CGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG-C
1 CGAGGCTCCCGCACGA-CCAAGGACCTAGGTTGCCGATGGTGTC
* * *
50093199 CTGAGGCTCCCGCACGACCAGGGTCCTAGGTTACCGATGGTGTC
1 C-GAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* ** * * * * *
50093243 CCAGGCTCTTGTAC-ATCCAAGCACCAAGG-TGCTGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGACCTAGGTTGCCGATGGTGTC
* *
50093285 CGAGGCTCCCGTACGACCAAGGGCCTAGG-TGCCGAT-G-GTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * * * * *
50093325 CAAAGGCTCTCGCACGACCTAGGGCCTAGGGTGTCGATGGTGCC
1 C-GAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * * * *
50093369 CGAGGCTCTCGCACGACTAGGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * **
50093412 CGAGGCTCCCGCACGACCAGGGGCCTAGAG-TGACGATGGTACC
1 CGAGGCTCCCGCACGACCAAGGACCTAG-GTTGCCGATGGTGTC
*
50093455 CGAGGCTCCCGCACGACCAGAGG-CCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCA-AGGACCTAGGTTGCCGATGGTGTC
* * * *
50093497 CGAGGCTCCTGCACGACCAGGGGCCTAGGCTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * *
50093540 CGA-GCTTCCGCACGACCAGGGGCCTAGGTT-CC-ATTGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGA-TGGTGTC
* ** * * *
50093581 TGAGGCTCTTGCACGACCAGGGCCCTAGGTTACCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * *
50093624 CGAGGCTCTCGCACGACCAAGGGCCTAGATTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * *
50093667 CGAGGCTCTCGCACGACCAAGGGCCTAGGTCGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * * * *
50093710 TGAGGCTCCTGCACGACCAAGGGCCTAGGTTGCTGGTGGTGGC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* *
50093753 CGAGGCTCCCGCACGATCAAGGGCCTAGGTTG-CGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
* * * *
50093795 CGAGGCTCCTGCA-TATCCAAGGCACCAAGG-TGCCGATGCTG-C
1 CGAGGCTCCCGCACGA-CCAAGG-ACCTAGGTTGCCGATGGTGTC
*
50093837 TCGAGGCTCACGCAC
1 -CGAGGCTCCCGCAC
50093852 CACTGACGTC
Statistics
Matches: 687, Mismatches: 108, Indels: 57
0.81 0.13 0.07
Matches are distributed among these distances:
40 4 0.01
41 41 0.06
42 192 0.28
43 397 0.58
44 53 0.08
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGACCTAGGTTGCCGATGGTGTC
Found at i:50093098 original size:86 final size:85
Alignment explanation
Indices: 50092985--50093851 Score: 789
Period size: 86 Copynumber: 10.2 Consensus size: 85
50092975 CCCTGCTGCT
* * * * *
50092985 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCGA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAA
* * *
50093048 GGCACCAAGGTGCCAATGGTGCC
64 GG-GCCTAGGTGCCGATGGTGCC
* * **
50093071 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAAGGCTCTGGCACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG-AGGCTCCCGCACGACCAAG
* *
50093136 GGCCTAGGTTGCCGATCGTGTC
65 GGCCTAGG-TGCCGATGGTGCC
* ** *
50093158 CGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTG-CCTGAGGCTCCCGCACGACC-A
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAA
*
50093219 GGGTCCTAGGTTACCGATGGTGTCC
64 GGG-CCTAGG-TGCCGATGGTG-CC
** * ** * * * *
50093244 C-AGGCTCTTGTAC-ATCCAAGCACCAAGG-TGCTGATGGTGCCCGAGGCTCCCGTACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAG
50093306 GGCCTAGGTGCCGATGGT-CC
65 GGCCTAGGTGCCGATGGTGCC
** * * * * * * * *
50093326 AAAGGCTCTCGCACGACCTAGGGCCTAGGGTGTCGATGGTGCCCGAGGCTCTCGCACGACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
50093391 GCCTAGGGTGCCGATGGTGCC
66 GCCTA-GGTGCCGATGGTGCC
* * **
50093412 CGAGGCTCCCGCACGACCAGGGGCCTAGAG-TGACGATGGTACCCGAGGCTCCCGCACGACC-AG
1 CGAGGCTCCCGCACGACCAAGGGCCTAG-GTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAG
50093475 AGGCCTAGGTTGCCGATGGT-CC
65 -GGCCTAGG-TGCCGATGGTGCC
* * * * *
50093497 CGAGGCTCCTGCACGACCAGGGGCCTAGGCTGCCGATGGTGTCCGA-GCTTCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
* *
50093561 GCCTAGGTTCC-ATTGGTGTC
66 GCCTAGGTGCCGA-TGGTGCC
* ** * *
50093581 TGAGGCTCTTGCACGACC-AGGGCCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAG
*
50093645 GGCCTAGATTGCCGATGGTGCC
65 GGCCTAG-GTGCCGATGGTGCC
* * * *
50093667 CGAGGCTCTCGCACGACCAAGGGCCTAGGTCGCCGATGGTGTCTGAGGCTCCTGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
* * *
50093732 GCCTAGGTTGCTGGTGGTGGC
66 GCCTAGG-TGCCGATGGTGCC
* * *
50093753 CGAGGCTCCCGCACGATCAAGGGCCTAGGTTG-CGATGGTGTCCGAGGCTCCTGCA-TATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAG
* * * *
50093816 GCACCAAGGTGCCGATGCTGCT
65 G-GCCTAGGTGCCGATGGTGCC
*
50093838 CGAGGCTCACGCAC
1 CGAGGCTCCCGCAC
50093852 CACTGACGTC
Statistics
Matches: 656, Mismatches: 95, Indels: 61
0.81 0.12 0.08
Matches are distributed among these distances:
82 3 0.00
83 29 0.04
84 109 0.17
85 217 0.33
86 242 0.37
87 55 0.08
88 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTGCCGATGGTGCC
Found at i:50093537 original size:255 final size:253
Alignment explanation
Indices: 50093008--50093803 Score: 901
Period size: 255 Copynumber: 3.1 Consensus size: 253
50092998 CATCCAACGT
* * * * *
50093008 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCGAGGCACCAAGGTGCCAATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCC-ATGGTGCCA
* *
50093072 GAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAAGGCTCTGGCACGACCAAGG
63 GAGGCTCTCGCACGACC-AGGGCCTAGGTTACCGATGGTGCCCG-AGGCTCTCGCACGACCAAGG
* * * ** *
50093137 GCCTAGGTTGCCGATCGTGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCT
126 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCT
* * *
50093201 GAGGCTCCCGCACGACCAG-GGTCCTAGGTTACCGATGGTGTCCC-AGGCTCTTGTAC-ATCCAA
190 GAGGCTCCCGCACGACCAGAGG-CCTAGGTTGCCGAT-G-GTCCCGAGGCTCCTGCACGA-CCAA
**
50093263 GCA
251 GGG
* * * * *
50093266 CCAAGG-TGCTGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTGCCGATGGT-CCAAA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCC-ATGGTGCCAGA
* ** * *
50093329 GGCTCTCGCACGACCTAGGGCCTAGGGTGTCGATGGTGCCCGAGGCTCTCGCACGACTAGGGGCC
65 GGCTCTCGCACGACC-AGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* * * * *
50093394 TAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGAGTGACGATGGTACCCGAG
129 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCTGAG
*
50093459 GCTCCCGCACGACCAGAGGCCTAGGTTGCCGATGGTCCCGAGGCTCCTGCACGACCAGGGG
193 GCTCCCGCACGACCAGAGGCCTAGGTTGCCGATGGTCCCGAGGCTCCTGCACGACCAAGGG
* * * * * *
50093520 CCTAGGCTGCCGATGGTGTCCGA-GCTTCCGCACGACCAGGGGCCTAGGTTCCATTGGTGTCTGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCA-TGGTGCCAGA
* *
50093584 GGCTCTTGCACGACCAGGGCCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGCC
65 GGCTCTCGCACGACCAGGG-CCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* * *
50093649 TAGATTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTCGCCGATGGTGTCTGAG
129 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT-GCCGATGGTGCCTGAG
* * * * * *
50093714 GCTCCTGCACGACCA-AGGGCCTAGGTTGCTGGTGGTGGCCGAGGCTCCCGCACGATCAAGGG
193 GCTCCCGCACGACCAGA-GGCCTAGGTTGCCGATGGT-CCCGAGGCTCCTGCACGACCAAGGG
50093776 CCTAGGTTG-CGATGGTGTCCGAGGCTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCC
50093804 TGCATATCCA
Statistics
Matches: 454, Mismatches: 70, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
253 6 0.01
254 112 0.25
255 253 0.56
256 49 0.11
257 28 0.06
258 6 0.01
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.18
Consensus pattern (253 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCATGGTGCCAGAG
GCTCTCGCACGACCAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCTGAGGCT
CCCGCACGACCAGAGGCCTAGGTTGCCGATGGTCCCGAGGCTCCTGCACGACCAAGGG
Found at i:50093635 original size:298 final size:298
Alignment explanation
Indices: 50092951--50093807 Score: 875
Period size: 298 Copynumber: 2.9 Consensus size: 298
50092941 TTCTTTAGAC
* * * * * * * * *
50092951 CGCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCACCCGCAC-ATCCAACGTCCTAGGT
1 CGCACATCC-AAGCACCAAGGTGCTCATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * * *
50093015 TGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCGA-GGCACCAAGGTGCCAATGGTGCCCGAGGCT
64 TGCCGATGGTGTCCGAGGCTCTCGCACGA-CCAAGGGC-CTAGGGTGCCGATGGTGCCCGAGGCT
* * * **
50093078 CCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCGAAGGCTCTGGCACGACCAAGGGCCTAG
127 CTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCG-AGGCTCCCGCACGACCAAGGGCCTAG
* * * * * *
50093143 GTTGCCGATCGTGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGC
191 GTTG-CGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGC
* * *
50093206 TCCCGCACGACCAGGGTCCTAGGTTACCGATGGTGTCCCAGGCTCT
253 TCCTGCACGACCAGGGGCCTAGGCTACCGATGGTGTCCCAGGCTCT
* * * *
50093252 TGTACATCCAAGCACCAAGGTGCTGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGG-TG
1 CGCACATCCAAGCACCAAGGTGCTCATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
* * *
50093316 CCGAT-G-GTCCAAAGGCTCTCGCACGACCTAGGGCCTAGGGTGTCGATGGTGCCCGAGGCTCTC
66 CCGATGGTGTCC-GAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTC
* * *
50093379 GCACGACTAGGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGAG-T
130 GCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTT
*
50093443 GACGATGGTACCCGAGGCTCCCGCACGACCAGAGGCCTAGGTTGCCGATGGT-CCCGAGGCTCCT
194 G-CGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCT
* *
50093507 GCACGACCAGGGGCCTAGGCTGCCGATGGTGTCCGA-GCT-T
257 GCACGACCAGGGGCCTAGGCTACCGATGGTGTCCCAGGCTCT
* ** * * * * **
50093547 CCGCACGA-CCAGGGGCCTAGGTTC-CATTGGTGTCTGAGGCTCTTGCACGACC-AGGGCCCTAG
1 -CGCAC-ATCCAAGCACCAAGGTGCTCA-TGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAG
* **
50093609 GTTACCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCTAGATTGCCGATGGTGCCCGAGGCT
62 GTTGCCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCT
* * *
50093674 CTCGCACGACCAAGGGCCTA-GGTCGCCGATGGTGTCTGAGGCTCCTGCACGACCAAGGGCCTAG
127 CTCGCACGACCAAGGGCCTAGGGT-GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
50093738 GTTGCTGGTGGTGGCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTG-CGATGGTGTCCGAGGCT
191 GTTGC-GATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCT
50093802 CCTGCA
254 CCTGCA
50093808 TATCCAAGGC
Statistics
Matches: 464, Mismatches: 72, Indels: 43
0.80 0.12 0.07
Matches are distributed among these distances:
295 6 0.01
296 43 0.09
297 119 0.26
298 234 0.50
299 14 0.03
300 40 0.09
301 8 0.02
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.17
Consensus pattern (298 bp):
CGCACATCCAAGCACCAAGGTGCTCATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
CCGATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCTCG
CACGACCAAGGGCCTAGGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
GATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC
GACCAGGGGCCTAGGCTACCGATGGTGTCCCAGGCTCT
Found at i:50098024 original size:35 final size:35
Alignment explanation
Indices: 50097985--50098056 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
50097975 CATCTCCGGA
* *
50097985 GCTTGGAAAATATGGAAAGTAATCTTCAAGGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
50098020 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
50098055 GC
1 GC
50098057 GATCCAGACT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:50103242 original size:35 final size:35
Alignment explanation
Indices: 50103203--50103274 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
50103193 CATCTCCGGA
* *
50103203 GCTTGGAAAATATGGAAAGTAATCTTCAAGGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
50103238 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
50103273 GC
1 GC
50103275 GATCCCAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:50107224 original size:85 final size:84
Alignment explanation
Indices: 50107123--50107964 Score: 738
Period size: 85 Copynumber: 9.9 Consensus size: 84
50107113 CATCCAACGT
* * * * * *
50107123 CCTAGATTGCCTATGGTGTCCGAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* *
50107188 GGCTCCCGCAC-ATCTGAGGCA
66 GGCTCCCGCACGA-C-AAGG-G
* * * ** * * * *
50107209 CCAAGG-TGCCGATGGTGCCCGAGGCTCCGGCACGA-CCAAGGGCCTAGGTTACTGATGGTTCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
50107272 GAGGCTCCGGCACGACCAAGGG
64 GAGGCTCCCGCACGA-CAAGGG
*
50107294 CCTAGGTTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
*
50107359 GGCTCCCGCACGACCAGGGG
66 GGCTCCCGCACGA-CAAGGG
* * **
50107379 CCTAGGTTACCGATGGTGTCCCAGGCTCTTGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
50107444 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGA-CAAGGG
* * * ** *
50107464 CCTAGG-TGCCGATGGTCT-CGAGGCTCTCGCATGA-CCAAGGGCCTAGGGTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA-CATCCAAGCACC-AAGGTGCCGATGGTGCCC
* *
50107526 GAGGTTCCCGCACGACCAGGG
64 GAGGCTCCCGCACGACAAGGG
* * * * * ** * *
50107547 CCTAGGGTGCCGATGGTGCCCGAGGGTCCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGT-CCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* *
50107610 AAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGA-CAAGGG
* ** * * * *
50107632 CCTAGGTTGCCGATGGTGTCCGA-GCTCCCGCACGA-CCAGGGGCCTAA-GTTCCGATAGTGTCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCC
*
50107694 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGA-CAAGGG
* * ** * *
50107716 CCTAGGTTGCCGATGGTGTCCGAGGCTCTCGCACGA-CCACGGGCCTAGGTTGCCGATGGTGCCT
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
50107780 GAGGCTCTCGCACGACCAAGGG
64 GAGGCTCCCGCACGA-CAAGGG
* * * ** * *
50107802 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCACACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
*
50107866 GAAGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGA-CAAGGG
* * * * *
50107888 CCTAGGTTGCCGATGGTGTCTGAGGCTCCTGCATATCCAAGGCACCAAGGTGCCGATGCTGCTCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCCCG
*
50107953 AGGCTCACGCAC
65 AGGCTCCCGCAC
50107965 CACTGACGTC
Statistics
Matches: 638, Mismatches: 99, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
83 37 0.06
84 136 0.21
85 231 0.36
86 226 0.35
87 8 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (84 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACAAGGG
Found at i:50107366 original size:42 final size:43
Alignment explanation
Indices: 50107100--50107964 Score: 884
Period size: 43 Copynumber: 20.3 Consensus size: 43
50107090 CCCTGCTGCT
* * * * * *
50107100 CGAGGCACCCGCAC-ATCCAACGTCCTAGATTGCCTATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
50107143 CGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
** * *
50107185 CGAGGCTCCCGCAC-ATCTGAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * * *
50107228 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTACTGATGGTTCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* **
50107271 CGAGGCTCCGGCACGACCAAGGGCCTAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** *
50107314 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
50107356 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGTCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CC
** ** *
50107400 C-AGGCTCTTGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
*
50107441 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
50107482 CGAGGCTCTCGCATGACCAAGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
50107525 CGAGGTTCCCGCACGACC-AGGGCCTAGGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
50107567 CGAGGGTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * *
50107609 TAAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
50107652 CGA-GCTCCCGCACGACCAGGGGCCTAAGTT-CCGATAGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
50107693 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
50107736 CGAGGCTCTCGCACGACCACGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
50107779 TGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
50107822 CGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
50107865 CGAAGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * * *
50107908 TGAGGCTCCTGCA-TATCCAAGGCACCAAGG-TGCCGATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
*
50107951 CGAGGCTCACGCAC
1 CGAGGCTCCCGCAC
50107965 CACTGACGTC
Statistics
Matches: 701, Mismatches: 102, Indels: 37
0.83 0.12 0.04
Matches are distributed among these distances:
41 43 0.06
42 249 0.36
43 400 0.57
44 9 0.01
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:50113435 original size:16 final size:16
Alignment explanation
Indices: 50113414--50113444 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50113404 CACGCTACGC
*
50113414 TGCTACCAGGCGACAA
1 TGCTACCAAGCGACAA
50113430 TGCTACCAAGCGACA
1 TGCTACCAAGCGACA
50113445 TTCATGTGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (16 bp):
TGCTACCAAGCGACAA
Found at i:50116164 original size:12 final size:12
Alignment explanation
Indices: 50116147--50116173 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50116137 GGGTATAAGT
50116147 TGATTCGGCAGG
1 TGATTCGGCAGG
50116159 TGATTCGGCAGG
1 TGATTCGGCAGG
50116171 TGA
1 TGA
50116174 GTTGTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.41, T:0.26
Consensus pattern (12 bp):
TGATTCGGCAGG
Found at i:50121734 original size:23 final size:25
Alignment explanation
Indices: 50121683--50121737 Score: 78
Period size: 23 Copynumber: 2.2 Consensus size: 25
50121673 TTTTCGATAT
*
50121683 CCGGGATGGCTCGCCTGGAGCCACCG
1 CCGGGATGGCTC-CATGGAGCCACCG
50121709 CCGGGATGGCT-CATGGAG-CACCG
1 CCGGGATGGCTCCATGGAGCCACCG
50121732 CCGGGA
1 CCGGGA
50121738 ACCTAACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 11 0.39
24 6 0.21
26 11 0.39
ACGTcount: A:0.15, C:0.35, G:0.40, T:0.11
Consensus pattern (25 bp):
CCGGGATGGCTCCATGGAGCCACCG
Found at i:50122859 original size:42 final size:43
Alignment explanation
Indices: 50122812--50122931 Score: 133
Period size: 42 Copynumber: 2.8 Consensus size: 43
50122802 GTGCGATGTT
*
50122812 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGA-GGTGG
1 CCCGAGGCTCCTGCACGACCAAGGGCCTAGGTGCCGATGGTGG
50122854 CCCGAGGCT-CTGCACGACC-AGGGCCTAGGTTTG-CGATGGTGG
1 CCCGAGGCTCCTGCACGACCAAGGGCCTAGG--TGCCGATGGTGG
* * * *
50122896 -CCGAAGCTCCTACATGACCAAGGGCCCAAGGTGCCG
1 CCCGAGGCTCCTGCACGACCAAGGG-CCTAGGTGCCG
50122932 GAGGATCTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
40 10 0.15
41 19 0.29
42 26 0.39
43 6 0.09
44 5 0.08
ACGTcount: A:0.18, C:0.33, G:0.35, T:0.13
Consensus pattern (43 bp):
CCCGAGGCTCCTGCACGACCAAGGGCCTAGGTGCCGATGGTGG
Found at i:50123552 original size:58 final size:58
Alignment explanation
Indices: 50123456--50123575 Score: 170
Period size: 58 Copynumber: 2.1 Consensus size: 58
50123446 GGGAGGGACA
* *
50123456 GGGACGATTCATTCTTGTTAGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCTTATTAGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * * *
50123513 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGGATTCTACCTTTT
1 GGGACGATTCATTC-TTATTAGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
50123572 GGGA
1 GGGA
50123576 TTGGGGACGG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 14 0.25
58 34 0.62
59 7 0.13
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (58 bp):
GGGACGATTCATTCTTATTAGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:50137971 original size:40 final size:41
Alignment explanation
Indices: 50137897--50138180 Score: 204
Period size: 40 Copynumber: 7.2 Consensus size: 41
50137887 CGAGGCATTC
* * * *
50137897 CCCG-ACATCCAAG-TCCTAGGTGCCTAT-GTTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
*
50137935 CCCGCACATCCAAGCACCAAGGTGCC-ATGCTGCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
*
50137975 CCCGCACA-CCGAGCA-CAAGGTGCCGATGGTGCC--GGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
* * * *
50138012 -CCGCA-A-CC-TG-GCCTAGGTTACCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGG-TGCCGATGGTG-CCGAGGCT
* * ** *
50138050 CCCGCAGAACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGG-TGCCGATGGTG-CCGAGGCT
* *
50138093 CCCGTACAT-CAAGCACGAAGGTGCCGATGGTGCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
* * ** *
50138133 CCCACACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCGAGGCT
50138175 -CCGCAC
1 CCCGCAC
50138181 GACTAGGTGC
Statistics
Matches: 201, Mismatches: 28, Indels: 31
0.77 0.11 0.12
Matches are distributed among these distances:
34 5 0.02
35 13 0.06
36 7 0.03
37 4 0.02
38 17 0.08
39 29 0.14
40 40 0.20
41 26 0.13
42 28 0.14
43 32 0.16
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (41 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCT
Found at i:50138413 original size:42 final size:41
Alignment explanation
Indices: 50138253--50138773 Score: 335
Period size: 42 Copynumber: 12.6 Consensus size: 41
50138243 GTCCGACAGG
*
50138253 GGCCTAGGTTG-CGATGGTGCCCGAGGCT-CC-C-CGACCAGG
1 GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA-A
* * * *
50138292 GGCCTAGGTTG-CGATGGTG-CG-GGC-CTCGTAGGA-CAG
1 GGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAA
* * * *
50138328 GGGCTAGG-TGCCGAT-G-GCCGAGAC-CCCGTACGACCAGG
1 GGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCA-A
* * * *
50138366 GGCCTAGGTTGCCGGTGGTGTTCGAGGCTTCTGCAC-ATCCAA
1 GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAA
*
50138408 GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA
1 GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAA
* * *
50138450 GCGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCGAG
1 G-GCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACC-AA
* *
50138493 GGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACGACCAA
1 GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAA
* * **
50138535 GGGCCTAGGTTGCGGATGGTGTCGAGGCTCTAGCACGACCAA
1 -GGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAA
*
50138577 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAA
1 -GGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAA
* * **
50138620 GGTCCTAGGTTGCCAATGGTGCCGAGGCTCTCGCAC-ATCCTT
1 GG-CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGA-CCAA
* * * *
50138662 GCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCGA
1 G-GCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAA
* * ** * * *
50138704 GCACCAAGG-TGCTAATGGTCACCGAGGCTCCTGCACAACCAA
1 G-GCCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAA
*
50138746 GAGCCTAGTTTGCCGATGGTGTCCGAGG
1 G-GCCTAGGTTGCCGATGGTG-CCGAGG
50138774 TTTTCGAGGC
Statistics
Matches: 391, Mismatches: 63, Indels: 52
0.77 0.12 0.10
Matches are distributed among these distances:
34 1 0.00
35 5 0.01
36 25 0.06
37 6 0.02
38 10 0.03
39 25 0.06
40 1 0.00
41 12 0.03
42 194 0.50
43 112 0.29
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (41 bp):
GGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAA
Found at i:50138509 original size:85 final size:86
Alignment explanation
Indices: 50138352--50138773 Score: 337
Period size: 85 Copynumber: 5.0 Consensus size: 86
50138342 TGGCCGAGAC
* * * * ** * * * *
50138352 CCCGTACGACCAGGGGCCTAGGTTGCCGGTGGTGTTCGAGGCTTCTGCAC-ATCCAA-GGCCTAG
1 CCCGCACGACCAAGCGCCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAA
50138415 GTTGCCGATGGTGTCCGAGGCT
65 GTTGCCGATGGTGTCCGAGGCT
* * * *
50138437 CCCGTAC-ATCCAAGCGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCGAGGGCCTAA
1 CCCGCACGA-CCAAGCGCCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAA
*
50138500 GTTGCCGATGGTGTCTGAGGCT
65 GTTGCCGATGGTGTCCGAGGCT
* * ** ** *
50138522 CCCGCACGACCAAGGGCCTAGGTTGCGGATGGTGT-CGAGGCTCTAGCACGACCAAGGGCCTAGG
1 CCCGCACGACCAAGCGCCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAAG
*
50138586 TTGCCGATGGTGCCCGAGGCT
66 TTGCCGATGGTGTCCGAGGCT
* * * ** **
50138607 CCCGTACGACCAAG-GTCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACC-A
1 CCCGCACGACCAAGCG-CCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * *
50138668 AGGTGCCGATGGTGCCCAAGGCT
64 AGTTGCCGATGGTGTCCGAGGCT
* * * ** * * *
50138691 CCCGCAC-ATCCGAGCACCAAGG-TGCTAATGGTCACCGAGGCTCCTGCACAACCAAGAGCCT-A
1 CCCGCACGA-CCAAGCGCCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAA
50138753 GTTTGCCGATGGTGTCCGAGG
65 G-TTGCCGATGGTGTCCGAGG
50138774 TTTTCGAGGC
Statistics
Matches: 275, Mismatches: 48, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
83 10 0.04
84 84 0.31
85 169 0.61
86 12 0.04
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (86 bp):
CCCGCACGACCAAGCGCCAAGGTTGCCAATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAAG
TTGCCGATGGTGTCCGAGGCT
Found at i:50138520 original size:43 final size:43
Alignment explanation
Indices: 50138252--50138649 Score: 399
Period size: 42 Copynumber: 9.7 Consensus size: 43
50138242 GGTCCGACAG
* *
50138252 GGGCCTAGGTTG-CGATGGTGCCCGAGGCTCCC---CGACCAG
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* *
50138291 GGGCCTAGGTTG-CGATGGTG--CG-GGC-CTCGTAGGA-C-A
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* * *
50138327 GGGGCTAGG-TGCCGAT-G-G-CCGAGAC-CCCGTACGACCAG
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* * * * *
50138365 GGGCCTAGGTTGCCGGTGGTGTTCGAGGCTTCTGCAC-ATCCAA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGA-CCAA
50138408 -GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGA-CCAA
* * *
50138450 GCGCCAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCGA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* * *
50138492 GGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACGACCAA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* ** *
50138535 GGGCCTAGGTTGCGGATGGTGT-CGAGGCTCTAGCACGACCAA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
*
50138577 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAA
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
* *
50138620 GGTCCTAGGTTGCCAATGGTG-CCGAGGCTC
1 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTC
50138650 TCGCACATCC
Statistics
Matches: 299, Mismatches: 42, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
34 1 0.00
35 7 0.02
36 24 0.08
37 4 0.01
38 10 0.03
39 26 0.09
40 1 0.00
41 1 0.00
42 125 0.42
43 100 0.33
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.18
Consensus pattern (43 bp):
GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACGACCAA
Found at i:50138678 original size:254 final size:241
Alignment explanation
Indices: 50138252--50138773 Score: 568
Period size: 254 Copynumber: 2.1 Consensus size: 241
50138242 GGTCCGACAG
* * *
50138252 GGGCCTAGGTTG-CGATGGTGCCCGAGGCTCCCCGACCAGGGGCCTAGGTTGCGATGGTGCGGGC
1 GGGCCTAAGTTGCCGATGGTGTCCGAGGCTCCCCGACCAAGGGCCTAGGTTGCGATGGTGCGGGC
* * * * * **
50138316 CTCGTAGGACAGGGGCTAGGTGCCGATGGCCGAGACCCCGTACGACCAGGGGCCTAGGTTGCCGG
66 CTAGCACGACAGGGCCTAGGTGCCGATGGCCGAGACCCCGTACGACCAAGGGCCTAGGTTGCCAA
* * * * * *
50138381 TGGTGTTCGAGGCTTCTGCACATCCAAGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACAT
131 TGGTGTCCGAGGCTTCTGCACATCCAAGACCAAGGTTGCCGATGGTGCCCAAGGCTCCCGCACAT
* * ** * * *
50138446 CCAAGCGCCAAGGTGCCGATGGTGTCCGAGGCTCCCGTACGACCGA
196 CCAAGCACCAAGGTGCCAATGGTCACCGAGGCTCCCGCACAACCAA
*
50138492 GGGCCTAAGTTGCCGATGGTGTCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCGGATGGTGT
1 GGGCCTAAGTTGCCGATGGTGTCCGAGGCT-CC-C-CGACCAAGGGCCTAGGTTGC-GATGGTG-
*
50138557 CGAGGCTCTAGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGG
61 CG-GGC-CTAGCACGA-C-AGGGCCTAGG-TGCCGAT-G-G-CCGAGAC-CCCGTACGACCAAGG
* **
50138622 TCCTAGGTTGCCAATGGTG-CCGAGGC-TCTCGCACATCCTTGCACCAAGG-TGCCGATGGTGCC
117 GCCTAGGTTGCCAATGGTGTCCGAGGCTTCT-GCACATCCAAG-ACCAAGGTTGCCGATGGTGCC
* * *
50138684 CAAGGCTCCCGCACATCCGAGCACCAAGGTGCTAATGGTCACCGAGGCTCCTGCACAACCAA
180 CAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTCACCGAGGCTCCCGCACAACCAA
*
50138746 GAGCCT-AGTTTGCCGATGGTGTCCGAGG
1 GGGCCTAAG-TTGCCGATGGTGTCCGAGG
50138774 TTTTCGAGGC
Statistics
Matches: 231, Mismatches: 33, Indels: 22
0.81 0.12 0.08
Matches are distributed among these distances:
240 11 0.05
241 15 0.06
242 2 0.01
243 1 0.00
244 19 0.08
245 7 0.03
246 2 0.01
247 3 0.01
248 6 0.03
249 1 0.00
250 9 0.04
251 7 0.03
252 1 0.00
253 6 0.03
254 106 0.46
255 35 0.15
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (241 bp):
GGGCCTAAGTTGCCGATGGTGTCCGAGGCTCCCCGACCAAGGGCCTAGGTTGCGATGGTGCGGGC
CTAGCACGACAGGGCCTAGGTGCCGATGGCCGAGACCCCGTACGACCAAGGGCCTAGGTTGCCAA
TGGTGTCCGAGGCTTCTGCACATCCAAGACCAAGGTTGCCGATGGTGCCCAAGGCTCCCGCACAT
CCAAGCACCAAGGTGCCAATGGTCACCGAGGCTCCCGCACAACCAA
Found at i:50142966 original size:35 final size:35
Alignment explanation
Indices: 50142927--50142998 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
50142917 TATCTCCGGA
*
50142927 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
50142962 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
50142997 GC
1 GC
50142999 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:50146589 original size:47 final size:47
Alignment explanation
Indices: 50146502--50147052 Score: 976
Period size: 47 Copynumber: 11.6 Consensus size: 47
50146492 GTATATTTGA
*
50146502 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50146551 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50146598 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50146647 ATGAATGTGAAAGTGTATATATGTGATAAGTCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50146694 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50146741 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
50146788 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50146835 ATGAATGTGAAAGTGTATATATGTTATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50146882 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50146929 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
50146976 ATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
50147023 ATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
50147053 TCCCGAAGGG
Statistics
Matches: 484, Mismatches: 16, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
47 427 0.88
49 57 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:50147221 original size:37 final size:37
Alignment explanation
Indices: 50147171--50147315 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
50147161 CCGAGCTCTA
* * *
50147171 AAGACCCGATGACTTCGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
50147208 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
50147245 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
50147282 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
50147316 AGCTAAAGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:50149022 original size:40 final size:40
Alignment explanation
Indices: 50148579--50149010 Score: 666
Period size: 40 Copynumber: 10.8 Consensus size: 40
50148569 GAGAATTGAG
50148579 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50148619 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50148659 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50148699 AGTGATATATCCGAGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50148739 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50148779 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50148819 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50148859 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50148899 AGCGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
50148939 AGTGATATATCCGTGCTAAACCCCGAAGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50148979 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
50149011 ATCATGCTGG
Statistics
Matches: 351, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 351 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50152865 original size:47 final size:47
Alignment explanation
Indices: 50152795--50153327 Score: 897
Period size: 47 Copynumber: 11.3 Consensus size: 47
50152785 GGAAAGCGTA
50152795 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
50152842 TATATATGGGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
50152889 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
50152938 TATATATGTGATAAGTCCTAATAGTCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
50152985 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
50153032 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
50153079 TATATATGTGATAAGGCCGAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
50153126 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
50153173 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
50153220 TATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * *
50153267 TATATATGTGAT-AGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
50153313 TATAAATGTGATAAG
1 TATATATGTGATAAG
50153328 TCCGAAGGGC
Statistics
Matches: 459, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 40 0.09
47 375 0.82
49 44 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:50153495 original size:37 final size:37
Alignment explanation
Indices: 50153445--50153589 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
50153435 CCGAGCTCTA
* *
50153445 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
50153482 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
50153519 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
50153556 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
50153590 AGCTAAAGGT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:50155296 original size:40 final size:40
Alignment explanation
Indices: 50154853--50155284 Score: 675
Period size: 40 Copynumber: 10.8 Consensus size: 40
50154843 GGGAATTGAG
50154853 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50154893 AGTGATATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50154933 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50154973 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50155013 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50155053 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50155093 AGTGATATATCCGGACTAAGTTCCGAATAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50155133 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50155173 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
50155213 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
50155253 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
50155285 ATCATGCTGG
Statistics
Matches: 354, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 354 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50159140 original size:47 final size:47
Alignment explanation
Indices: 50159053--50159744 Score: 1213
Period size: 47 Copynumber: 14.6 Consensus size: 47
50159043 GTATATCTGA
*
50159053 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50159102 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159149 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
50159198 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159245 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
50159292 ATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159339 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159386 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159433 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159480 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
50159527 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50159574 ATGATTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
50159621 ATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
50159668 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
50159715 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
50159745 TCCCGAAGGG
Statistics
Matches: 618, Mismatches: 23, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
47 561 0.91
49 57 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:50159913 original size:37 final size:37
Alignment explanation
Indices: 50159863--50160007 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
50159853 CCGAGCTCTA
* *
50159863 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
50159900 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
50159937 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
50159974 AAGACCCGATAACTTCGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
50160008 AGCTAAAGGT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:50164915 original size:35 final size:35
Alignment explanation
Indices: 50164876--50164947 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
50164866 CATCTCCGGA
*
50164876 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGCAAATATGG-AAGGAGATCTTCAAAGATAT
50164911 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
50164946 GC
1 GC
50164948 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:50170018 original size:43 final size:43
Alignment explanation
Indices: 50169969--50170358 Score: 189
Period size: 43 Copynumber: 9.1 Consensus size: 43
50169959 TTTTCTTTAG
* * **
50169969 CCGCACATTCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCAT-
1 CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGC-TC
* * * * * *
50170012 CCGCACATCCAATG-TCCTAGGTTGCCTATGGTG-TCCGAGGCTC
1 CCGCACATCCGAGGCACCAAGG-TGCCAATGCTGCT-CGAGGCTC
*
50170055 CCGCACATCC-AAGCACCAAGGTGCCAATGCTGCTCGAGGCTC
1 CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCTC
* * *
50170097 CCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTC
1 CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCTC
* * * * * *
50170140 CCGCATGA-CCAAGG-GCCTAGGTTGCCGATGGTG-TCCGAGGCTC
1 CCGCA-CATCCGAGGCACCAAGG-TGCCAATGCTGCT-CGAGGCTC
* * * * * * *
50170183 TCGTACATCC-AAGCACAAAGGTGCCGATGGTGCCCGAGGCTC
1 CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCTC
* * * * *
50170225 CCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG-TCCGAGGCTC
1 CCGCAC-ATCCGAGGCACCAAGG-TGCCAATGCTGCT-CGAGGCTC
* * * * *
50170268 CCGTACATCC-AAGCACAAAGGTGCCGATGGTG-TCCGAGGCTC
1 CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCT-CGAGGCTC
* ** * *
50170310 CCGTACGA-CC-AGGGGCCTAGGTTGCCAATGCTGCCCGAGGCTC
1 CCGCAC-ATCCGAGGCACCAAGG-TGCCAATGCTGCTCGAGGCTC
50170353 CCGCAC
1 CCGCAC
50170359 GACCAGGGGC
Statistics
Matches: 274, Mismatches: 52, Indels: 42
0.74 0.14 0.11
Matches are distributed among these distances:
42 110 0.40
43 163 0.59
44 1 0.00
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.17
Consensus pattern (43 bp):
CCGCACATCCGAGGCACCAAGGTGCCAATGCTGCTCGAGGCTC
Found at i:50170128 original size:85 final size:85
Alignment explanation
Indices: 50170027--50171192 Score: 1141
Period size: 85 Copynumber: 13.7 Consensus size: 85
50170017 CATCCAATGT
* ** * * *
50170027 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTC
*
50170090 GAGGCTCCCGCAC-ATCCGAGGCA
65 GAGGCTCCCGCACGA-CC-AGG-G
* * *
50170113 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCGATGGTG-TCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT-C
* * *
50170176 GAGGCTCTCGTAC-ATCCA-AG
65 GAGGCTCCCGCACGA-CCAGGG
* *
50170196 CACAAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-T
1 C-C-TAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT
* *
50170259 CCGAGGCTCCCGTAC-ATCCA-AG
64 -CGAGGCTCCCGCACGA-CCAGGG
* * * * * *
50170281 CACAAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCCAATGCTGCC
1 C-C-TAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT
50170345 CGAGGCTCCCGCACGACCAGGGG
64 CGAGGCTCCCGCACGACCA-GGG
* * * * *
50170368 CCTAGG-TGCCGATGGGGCCCGAGGCTCTCGCACGACC-AGGAGCCTAGGTTGCTGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCTC
*
50170431 GAGGATCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCA-GGG
* * * *
50170453 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CAGGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
50170517 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCA-GGG
* * * * *
50170538 CCTAGGTTGTCGATGGTG-CCGAGGCTCGCGCATGACCAGGGGCCTAGGTTACCGATGGTGC-CG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
*
50170601 AGACTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCA-GGG
*
50170622 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTG-TC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTC
** *
50170685 TGAGGCTCCCATAC-ATCCAAGCG
65 -GAGGCTCCCGCACGA-CC-AGGG
* *
50170708 CC-AGGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTG-TCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT-C
50170771 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACC-AGGG
* * * * *
50170793 CCTAGGTTGCGGATAGTG-CCGAGGCTCTCACACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
*
50170857 AGGCTCCCGTACGACCAAGGG
66 AGGCTCCCGCACGACC-AGGG
* *
50170878 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTG-TCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCT-C
50170942 GAGGCTCCCGCACGACCAAGGG
65 GAGGCTCCCGCACGACC-AGGG
* * * * *
50170964 CCTAGGTTACGGATGGTGT-CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
*
50171028 AGGCTCCCGTACGACCAAGGG
66 AGGCTCCCGCACGACC-AGGG
* * ** ** * *
50171049 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCTC
* * **
50171111 AAGGCTCCCGCGC-ATCCGAGTA
65 GAGGCTCCCGCACGA-CC-AGGG
* * ** * * * *
50171133 CCAAGG-TGCTGATGGTCACCGAGGCTCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
50171193 TCCGAGGTGT
Statistics
Matches: 941, Mismatches: 106, Indels: 67
0.84 0.10 0.06
Matches are distributed among these distances:
83 10 0.01
84 113 0.12
85 643 0.68
86 172 0.18
87 3 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCTCG
AGGCTCCCGCACGACCAGGG
Found at i:50170197 original size:128 final size:129
Alignment explanation
Indices: 50170027--50171199 Score: 1289
Period size: 128 Copynumber: 9.2 Consensus size: 129
50170017 CATCCAATGT
* ** * * * *
50170027 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
50170091 AGGCTCCCGCAC-ATCCGAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGG
66 AGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
50170154 G
129 G
* * ** **
50170155 CCTAGGTTGCCGATGGTGTCCGAGGCTCTCGTACATCCAAGCACAAAGG-TGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * **
50170219 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * * * *
50170283 CAAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGA-CCAGGGGCCTAGGTTGCCAATGCTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
50170346 GAGGCTCCCGCACGACCAGGGGCCTAGG-TGCCGATGGGGCCCGAGGCTCTCGCACGACC-AGGA
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-
50170409 G
129 G
* * * *
50170410 CCTAGGTTGCTGATGGTGCCCGAGGATCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
50170474 GAGGCTCCCGCACGA-CAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
50170538 CCTAGGTTGTCGATGGTG-CCGAGGCTCGCGCATGA-CCAGGGGCCTAGGTTACCGATGGTG-CC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCA-CATCCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * *
50170600 GAGACTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
50170664 G
129 G
* ** * * *
50170665 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCATACATCCAAGCGCC-AGGGTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
50170729 AGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
50170793 CCTAGGTTGCGGATAGTG-CCGAGGCTCTCACACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * *
50170856 GAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCAAGGCTCCCACACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
50170921 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACGGATGGTG-TC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
50170984 GAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGTACGACCAAGGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** ** * *
50171049 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCACATCCTTGCACCAAGG-TGCCGATGGTGCCCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * ** * * * * *
50171112 AGGCTCCCGCGC-ATCCGAGTACCAAGG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGA
66 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGG
50171174 G
129 G
*
50171175 CCTAGTTTGCCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGTCCGAGG
50171200 TGTCCGAGGC
Statistics
Matches: 902, Mismatches: 118, Indels: 51
0.84 0.11 0.05
Matches are distributed among these distances:
125 1 0.00
126 74 0.08
127 260 0.29
128 525 0.58
129 42 0.05
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (129 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:50170362 original size:43 final size:43
Alignment explanation
Indices: 50170027--50171199 Score: 1260
Period size: 43 Copynumber: 27.6 Consensus size: 43
50170017 CATCCAATGT
* * **
50170027 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
50170070 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* *
50170113 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * **
50170155 CCTAGGTTGCCGATGGTGTCCGAGGCTCTCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
**
50170198 CAAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
50170240 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * * *
50170283 CAAAGG-TGCCGATGGTGTCCGAGGCTCCCGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
50170325 CCTAGGTTGCCAATGCTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
50170368 CCTAGG-TGCCGATGGGGCCCGAGGCTCTCGCACGACC-AGGAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-G
* * *
50170410 CCTAGGTTGCTGATGGTGCCCGAGGATCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
50170453 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
50170495 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
50170538 CCTAGGTTGTCGATGGTG-CCGAGGCTCGCGCATGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
50170580 CCTAGGTTACCGATGGTG-CCGAGACTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
50170622 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * ** *
50170665 CCTAGGTTGCCGATGGTGTCTGAGGCTCCCATAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
50170708 CC-AGGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
50170750 CCTAGGTTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
50170793 CCTAGGTTGCGGATAGTG-CCGAGGCTCTCACACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
50170835 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
50170878 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCACACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
50170921 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
50170964 CCTAGGTTACGGATGGTG-TCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
50171006 CCTAGGTTGCCGATGGTGCCCAAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * ** **
50171049 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * **
50171091 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCGC-ATCCGAGTA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * *
50171133 CCAAGG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
* *
50171175 CCTAGTTTGCCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
50171200 TGTCCGAGGC
Statistics
Matches: 970, Mismatches: 135, Indels: 50
0.84 0.12 0.04
Matches are distributed among these distances:
41 14 0.01
42 440 0.45
43 513 0.53
44 3 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:50171116 original size:42 final size:41
Alignment explanation
Indices: 50171013--50171166 Score: 112
Period size: 42 Copynumber: 3.7 Consensus size: 41
50171003 GGGCCTAGGT
* * ** *
50171013 TGCCGATGGTGCCCAAGGCTCCCGTACGA-CCAAGGGCCTAGG
1 TGCCGATGGTG-CCAAGGCTCCCGCAC-ATCCGAGCACCAAGG
* * * **
50171055 TTGCCAATGGTGCCGAGGCTCTCGCACATCCTTGCACCAAGG
1 -TGCCGATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAGG
* *
50171097 TGCCGATGGTGCCCAAGGCTCCCGCGCATCCGAGTACCAAGG
1 TGCCGATGGTG-CCAAGGCTCCCGCACATCCGAGCACCAAGG
* * * *
50171139 TGCTGATGGTCACCGAGGCTCCTGCACA
1 TGCCGATGGT-GCCAAGGCTCCCGCACA
50171167 ACCAAGAGCC
Statistics
Matches: 87, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 11 0.13
42 66 0.76
43 10 0.11
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.18
Consensus pattern (41 bp):
TGCCGATGGTGCCAAGGCTCCCGCACATCCGAGCACCAAGG
Found at i:50179746 original size:85 final size:84
Alignment explanation
Indices: 50179589--50180092 Score: 391
Period size: 85 Copynumber: 6.0 Consensus size: 84
50179579 TCTTTAGCCT
* * ** * *
50179589 GCACATCCGAGGCACCAGGGTGCCCCTGCTGCTCGAGGCATCCGCAC-ATCCAATGTCCTAGGTT
1 GCACATCC-AAGCACCAAGGTGCCGATGCTGCTCGAGGC-TCCGCACGA-CCAAGGGCCTAGGTT
*
50179653 GCCTATGGTGTCCGAGGCTCCC
63 GCCGATGGTGTCCGAGGCTCCC
* * * *
50179675 GCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCACCAAGG-T
1 GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCT-CCGCACGA-CCAAGG-GCCTAGGTT
* *
50179738 ACCGATGGTGCCCGAGGCTCCC
63 GCCGATGGTGTCCGAGGCTCCC
* ** * * * *
50179760 GCATGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCA-CATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCT-CCGCACGACCAAGGGCCTAGGTT
50179824 GCCGATGGTGTCCGAGGCTCCC
63 GCCGATGGTGTCCGAGGCTCCC
* * *
50179846 GTACAT-CAAGCACGAAGGTGCCGATGGTGC-CGAGG-TCCGCACGACC-AGGGCCTAGG-TG-C
1 GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCGCACGACCAAGGGCCTAGGTTGCC
50179905 GATGGTG-CCTGAGGCTCCC
66 GATGGTGTCC-GAGGCTCCC
** * * *
50179924 GCACGA--C-AGGGCCTAGGT-CCGATGGTGC-CGAGGCTCTCACACGACC-AGGGCCTAGGTTG
1 GCAC-ATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTC-CGCACGACCAAGGGCCTAGGTTG
*
50179983 CCGATGGTGTCCGAGGATCCC
64 CCGATGGTGTCCGAGGCTCCC
* ** * * * *
50180004 GCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC-CAC-ACAACAGGGGCCTAGGT
1 GCAC-ATCCAAGCACCAAGG-TGCCGATGCTGCTCGAGGCTCCGCACGAC--CAAGGGCCTAGGT
*
50180066 TGCCGATGGTGCCCGAGGCTCCC
62 TGCCGATGGTGTCCGAGGCTCCC
50180089 GCAC
1 GCAC
50180093 GACCAGGGGC
Statistics
Matches: 354, Mismatches: 42, Indels: 45
0.80 0.10 0.10
Matches are distributed among these distances:
76 15 0.04
77 11 0.03
78 39 0.11
79 5 0.01
80 32 0.09
81 13 0.04
82 12 0.03
83 9 0.03
84 24 0.07
85 128 0.36
86 65 0.18
87 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (84 bp):
GCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCGCACGACCAAGGGCCTAGGTTGCC
GATGGTGTCCGAGGCTCCC
Found at i:50180010 original size:42 final size:41
Alignment explanation
Indices: 50179645--50180136 Score: 492
Period size: 43 Copynumber: 11.9 Consensus size: 41
50179635 CATCCAATGT
* **
50179645 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CC-AGGG
* * * *
50179688 CCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCA
1 CCTAGGTTGCCGATGGTGC-CGAGGCTCCCGCACGA-CC-AGG-G
* * *
50179731 CCAAGG-TACCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACC-AGGG
*
50179773 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACC-AGGG
* * *
50179816 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCA-AG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAGGG
*
50179856 CACGAAGG-TGCCGATGGTGCCGAGG-T-CCGCACGACCAGGG
1 C-C-TAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGG
50179896 CCTAGG-TG-CGATGGTGCCTGAGGCTCCCGCACGA-CAGGG
1 CCTAGGTTGCCGATGGTGCC-GAGGCTCCCGCACGACCAGGG
* *
50179935 CCTAGG-T-CCGATGGTGCCGAGGCTCTCACACGACCAGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGG
*
50179974 CCTAGGTTGCCGATGGTGTCCGAGGATCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA-GGG
* *
50180017 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCACAC-AACAGGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA-GGG
50180059 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCA-GGG
* *
50180102 CCTAGGTTACCGATGGTGCCGAGGCTCTCGCACGA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGA
50180137 TGTGACAGCC
Statistics
Matches: 394, Mismatches: 36, Indels: 39
0.84 0.08 0.08
Matches are distributed among these distances:
37 10 0.03
38 27 0.07
39 39 0.10
40 19 0.05
41 23 0.06
42 112 0.28
43 162 0.41
44 2 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (41 bp):
CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGG
Found at i:50180093 original size:85 final size:82
Alignment explanation
Indices: 50179645--50180128 Score: 493
Period size: 85 Copynumber: 5.8 Consensus size: 82
50179635 CATCCAATGT
* * ** * * *
50179645 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGC-CG
* *
50179709 AGGCTCCCGCACATCCGAGGCA
64 AGGCTCCCACACA-CC-AGG-G
* * * *
50179731 CCAAGG-TACCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTG-CCG
*
50179795 AGGCTCCCGCACGACCAAGGG
64 AGGCTCCCACAC-ACC-AGGG
* * * ** **
50179816 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCAAGCACGAAGGTGCCGATGGTGCCGAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGAG
*
50179880 G-TCCGCAC-GACCAGGG
66 GCTCC-CACACACCAGGG
*
50179896 CCTAGG-TG-CGATGGTGCCTGAGGCTCCCGCACGA-C-AGGGCCTAGGT-CCGATGGTGCCGAG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGAG
*
50179956 GCTCTCACACGACCAGGG
66 GCTCCCACAC-ACCAGGG
* * *
50179974 CCTAGGTTGCCGATGGTGTCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTG-CCG
*
50180039 AGGCTCCCACACAACAGGGG
64 AGGCTCCCACACACCA-GGG
* *
50180059 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCGA
50180124 GGCTC
65 GGCTC
50180129 TCGCACGATG
Statistics
Matches: 336, Mismatches: 44, Indels: 38
0.80 0.11 0.09
Matches are distributed among these distances:
76 18 0.05
77 9 0.03
78 35 0.10
79 5 0.01
80 33 0.10
81 4 0.01
82 12 0.04
83 9 0.03
84 31 0.09
85 122 0.36
86 56 0.17
87 2 0.01
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (82 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCGAG
GCTCCCACACACCAGGG
Found at i:50182640 original size:47 final size:47
Alignment explanation
Indices: 50182589--50182802 Score: 329
Period size: 47 Copynumber: 4.6 Consensus size: 47
50182579 GATAATTGTG
*
50182589 ATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50182636 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50182683 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
50182730 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50182777 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
50182803 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 152 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50195617 original size:19 final size:20
Alignment explanation
Indices: 50195587--50195625 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
50195577 AAAAGAAAAA
50195587 AAATCAAGGAAAAAAATAAG
1 AAATCAAGGAAAAAAATAAG
50195607 AAATCAA-GAAAAAAATAAG
1 AAATCAAGGAAAAAAATAAG
50195626 TTTCTACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.72, C:0.05, G:0.13, T:0.10
Consensus pattern (20 bp):
AAATCAAGGAAAAAAATAAG
Found at i:50206962 original size:24 final size:23
Alignment explanation
Indices: 50206934--50206980 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
50206924 TAGTGGACTT
*
50206934 TAATGCATATG-ATGTAATGTAATG
1 TAATGCAAATGCATG-AATG-AATG
50206958 TAATGCAAATGCATGAATGAATG
1 TAATGCAAATGCATGAATGAATG
50206981 CAAAAAGGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 14 0.67
25 3 0.14
ACGTcount: A:0.40, C:0.06, G:0.21, T:0.32
Consensus pattern (23 bp):
TAATGCAAATGCATGAATGAATG
Found at i:50209189 original size:16 final size:16
Alignment explanation
Indices: 50209168--50209201 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
50209158 TTTTATGATG
* *
50209168 AAATGCTATGCAGTCA
1 AAATGCCATGCAATCA
50209184 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
50209200 AA
1 AA
50209202 GCAAAACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:50231521 original size:19 final size:19
Alignment explanation
Indices: 50231492--50231528 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
50231482 GTTCTTGTCG
50231492 AAATAAAAAGAAG-AAGAA
1 AAATAAAAAGAAGCAAGAA
50231510 AAATAGAAAAGAAGCAAGA
1 AAATA-AAAAGAAGCAAGA
50231529 CATTCGGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (19 bp):
AAATAAAAAGAAGCAAGAA
Found at i:50232266 original size:34 final size:34
Alignment explanation
Indices: 50232201--50232272 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
50232191 ACATAATTAT
* **
50232201 ATATGTATAGTTTGGTATAATTGAAAGTGAATAC
1 ATATGTATAGTTTGATATAACCGAAAGTGAATAC
* *
50232235 ATATGTATGGTTTGATATAACCG-AAGATGAATAT
1 ATATGTATAGTTTGATATAACCGAAAG-TGAATAC
50232269 ATAT
1 ATAT
50232273 ATACATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 3 0.09
34 29 0.91
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.38
Consensus pattern (34 bp):
ATATGTATAGTTTGATATAACCGAAAGTGAATAC
Found at i:50238954 original size:23 final size:23
Alignment explanation
Indices: 50238857--50238956 Score: 76
Period size: 23 Copynumber: 4.3 Consensus size: 23
50238847 AGCTCCTCCT
*
50238857 GAGCTGATAACAGTAAGCTCTAAT
1 GAGCTGA-AACAGTAAGCTCTAAC
* *
50238881 GAGCTGAAACTGCAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTA-AC
* ** * *
50238904 GAGCTGGAATTGTAAGCTCCAAT
1 GAGCTGAAACAGTAAGCTCTAAC
* * *
50238927 TAGCTTAAACAGTAAGCTCTTAC
1 GAGCTGAAACAGTAAGCTCTAAC
50238950 GAGCTGA
1 GAGCTGA
50238957 TATATCGGTA
Statistics
Matches: 57, Mismatches: 17, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
22 1 0.02
23 48 0.84
24 8 0.14
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:50248145 original size:40 final size:39
Alignment explanation
Indices: 50248087--50248258 Score: 191
Period size: 40 Copynumber: 4.3 Consensus size: 39
50248077 ACAGGTTTTT
* * *
50248087 AACCCGGATTCCATTCCAGCACGAAGCCTACGGGTCTTTA
1 AACCCGGATACAATTCCAGCA-GAAGCCTGCGGGTCTTTA
* * *
50248127 AACTCGGATACAATTCCAGCATATAGCCTGCGGGTCTTGA
1 AACCCGGATACAATTCCAGCAGA-AGCCTGCGGGTCTTTA
* *
50248167 AACCCGGATACAATTCCAGCATATAGCCTGCAGGTCTTTA
1 AACCCGGATACAATTCCAGCAGA-AGCCTGCGGGTCTTTA
* * *
50248207 AATCCGGATACCATTCCAGCATAAAGCCTGCGGGTCTTTA
1 AACCCGGATACAATTCCAGCA-GAAGCCTGCGGGTCTTTA
* *
50248247 AGCCTGGATACA
1 AACCCGGATACA
50248259 CACATCAAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 111 0.98
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
AACCCGGATACAATTCCAGCAGAAGCCTGCGGGTCTTTA
Found at i:50248183 original size:80 final size:80
Alignment explanation
Indices: 50248087--50248258 Score: 222
Period size: 80 Copynumber: 2.1 Consensus size: 80
50248077 ACAGGTTTTT
* * *
50248087 AACCCGGATTCCATTCCAGCACGA-AGCCTACGGGTCTTTAAA-CTCGGATACAATTCCAGCATA
1 AACCCGGATACAATTCCAGCA-GATAGCCTACAGGTCTTTAAATC-CGGATACAATTCCAGCATA
*
50248150 TAGCCTGCGGGTCTTGA
64 AAGCCTGCGGGTCTTGA
* * *
50248167 AACCCGGATACAATTCCAGCATATAGCCTGCAGGTCTTTAAATCCGGATACCATTCCAGCATAAA
1 AACCCGGATACAATTCCAGCAGATAGCCTACAGGTCTTTAAATCCGGATACAATTCCAGCATAAA
*
50248232 GCCTGCGGGTCTTTA
66 GCCTGCGGGTCTTGA
* *
50248247 AGCCTGGATACA
1 AACCCGGATACA
50248259 CACATCAAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 1 0.01
80 78 0.98
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AACCCGGATACAATTCCAGCAGATAGCCTACAGGTCTTTAAATCCGGATACAATTCCAGCATAAA
GCCTGCGGGTCTTGA
Found at i:50251190 original size:85 final size:85
Alignment explanation
Indices: 50251042--50251201 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
50251032 CATAAACAAG
* * * * * *
50251042 TACAATGTCGACGTCCCGGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCTCAGACA
1 TACAATGTCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTATGTCCCAGACA
*
50251107 GGGTCTTACATGAAATCAGA
66 CGGTCTTACATGAAATCAGA
* * *
50251127 TACAATGTCGATGTCCCAGACATGGTTTTAGACGTAAATCTC-A-ATCGAGGCCTATGTCCCAGA
1 TACAATGTCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAATATCGAGGCCTATGTCCCAGA
50251190 CACGGTCTTACA
64 CACGGTCTTACA
50251202 CGATGTCTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 57 0.90
86 4 0.06
87 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (85 bp):
TACAATGTCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAGGCCTATGTCCCAGACA
CGGTCTTACATGAAATCAGA
Found at i:50254497 original size:26 final size:26
Alignment explanation
Indices: 50254466--50254523 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
50254456 TATGGAGTTT
*
50254466 GCCACAGTGGCATTT-TTTCATATTAC
1 GCCACAGAGGC-TTTCTTTCATATTAC
*
50254492 GCCACAGAGGCTTTCTTTCATATTAT
1 GCCACAGAGGCTTTCTTTCATATTAC
50254518 GCCACA
1 GCCACA
50254524 AAGACTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (26 bp):
GCCACAGAGGCTTTCTTTCATATTAC
Found at i:50255830 original size:37 final size:37
Alignment explanation
Indices: 50255787--50255860 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
50255777 AGTACTTTAT
50255787 TTTGATTAAAATAATCATATAATTTGTAGGGAATTAA
1 TTTGATTAAAATAATCATATAATTTGTAGGGAATTAA
50255824 TTTGATTAAAATAATCATATAATTTGTAGGGAATTAA
1 TTTGATTAAAATAATCATATAATTTGTAGGGAATTAA
50255861 CCCGTGTATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.03, G:0.14, T:0.41
Consensus pattern (37 bp):
TTTGATTAAAATAATCATATAATTTGTAGGGAATTAA
Found at i:50261656 original size:43 final size:42
Alignment explanation
Indices: 50261500--50261657 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 42
50261490 TATGTGTTCT
*
50261500 CATGTAAGACCATGTCTGGGACGTTGGCATCA-ACTTATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCATA-TT-TGA-TTA
* * * ** * *
50261544 CGTGTAAGACCATGTCTGGGACATCAGCATC-TATTTTATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTA
50261585 CATGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATTTGATTA
*
50261628 CATGTAAGACCACGTCTGAGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
50261658 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 15
0.76 0.11 0.12
Matches are distributed among these distances:
41 26 0.28
42 3 0.03
43 35 0.38
44 29 0.31
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTA
Found at i:50266512 original size:40 final size:40
Alignment explanation
Indices: 50266434--50266614 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
50266424 ACCCAAGTAT
* *
50266434 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
50266473 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
50266513 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
50266553 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATTC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
50266593 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50266615 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.09
40 117 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50267599 original size:22 final size:22
Alignment explanation
Indices: 50267574--50267648 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
50267564 TTTGCACTTC
50267574 ACCTTAATAGCTAGCTTAGCAA
1 ACCTTAATAGCTAGCTTAGCAA
* * * **
50267596 ACCTTAAT--TTAACATATAACTTC
1 ACCTTAATAGCTAGC-T-TAGC-AA
50267619 ACCTTAATAGCTAGCTTAGCAA
1 ACCTTAATAGCTAGCTTAGCAA
50267641 ACCTTAAT
1 ACCTTAAT
50267649 TTAACATATA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
20 3 0.08
21 1 0.03
22 19 0.50
23 11 0.29
24 1 0.03
25 3 0.08
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (22 bp):
ACCTTAATAGCTAGCTTAGCAA
Found at i:50267618 original size:45 final size:45
Alignment explanation
Indices: 50267569--50267659 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
50267559 TAACATTTGC
50267569 ACTTCACCTTAATAGCTAGCTTAGCAAACCTTAATTTAACATATA
1 ACTTCACCTTAATAGCTAGCTTAGCAAACCTTAATTTAACATATA
50267614 ACTTCACCTTAATAGCTAGCTTAGCAAACCTTAATTTAACATATA
1 ACTTCACCTTAATAGCTAGCTTAGCAAACCTTAATTTAACATATA
50267659 A
1 A
50267660 TTGTTCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (45 bp):
ACTTCACCTTAATAGCTAGCTTAGCAAACCTTAATTTAACATATA
Found at i:50274731 original size:40 final size:40
Alignment explanation
Indices: 50274653--50274876 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
50274643 ACCCAAGTAT
* *
50274653 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
50274692 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
50274732 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50274772 CTTCGGGACTTAGCCAGGTTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
50274815 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
50274855 CTTCGGGACTTAACTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50274877 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50274838 original size:83 final size:80
Alignment explanation
Indices: 50274653--50274866 Score: 281
Period size: 83 Copynumber: 2.6 Consensus size: 80
50274643 ACCCAAGTAT
* * * *
50274653 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCAGGATATAG
**
50274716 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
*
50274732 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAGGTTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAGGATATAGT
50274796 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
50274815 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTA
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTA
50274867 ACTCGGATAT
Statistics
Matches: 120, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
79 13 0.11
80 48 0.40
81 1 0.01
83 58 0.48
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAGGATATAGT
CACTAGCACAAATGC
Found at i:50277274 original size:56 final size:56
Alignment explanation
Indices: 50277188--50277298 Score: 204
Period size: 56 Copynumber: 2.0 Consensus size: 56
50277178 CTTGTAGAAT
50277188 ATGAGTTGGTATGATTTGGTTTGACAAAATATGCTGTTGTAAATATGTTAAGTGTA
1 ATGAGTTGGTATGATTTGGTTTGACAAAATATGCTGTTGTAAATATGTTAAGTGTA
* *
50277244 ATGAGTTGGTATGATTTGGTTTGACAAAATATGTTGTTGTAAATATGTTGAGTGT
1 ATGAGTTGGTATGATTTGGTTTGACAAAATATGCTGTTGTAAATATGTTAAGTGT
50277299 GGATAATGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.42
Consensus pattern (56 bp):
ATGAGTTGGTATGATTTGGTTTGACAAAATATGCTGTTGTAAATATGTTAAGTGTA
Found at i:50277505 original size:27 final size:27
Alignment explanation
Indices: 50277474--50277534 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
50277464 TGTCTAGTTA
50277474 GTGTGTGATGCATGGCTTGCCCCATGG
1 GTGTGTGATGCATGGCTTGCCCCATGG
50277501 GTGTGTGATGCATGGCTTGCCCCATGG
1 GTGTGTGATGCATGGCTTGCCCCATGG
50277528 GTGTGTG
1 GTGTGTG
50277535 TGATTCGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.10, C:0.20, G:0.39, T:0.31
Consensus pattern (27 bp):
GTGTGTGATGCATGGCTTGCCCCATGG
Found at i:50283375 original size:46 final size:46
Alignment explanation
Indices: 50283308--50283483 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
50283298 TATTTGGGCA
50283308 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
50283354 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* * *
50283401 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
50283447 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50283484 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 36 0.33
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:50283463 original size:93 final size:93
Alignment explanation
Indices: 50283304--50283475 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
50283294 GGGATATTTG
* *
50283304 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
50283369 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
50283397 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
50283461 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
50283476 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:50288355 original size:40 final size:39
Alignment explanation
Indices: 50288303--50288486 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 39
50288293 TAACTCATAC
* *
50288303 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
50288343 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
50288383 AAGGCCTTCGGGACTTGACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
** * ** *
50288423 AATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAATTA-AAAC-TCGCACA
*
50288464 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50288487 CAGCGTTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 6 0.05
40 104 0.86
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:50288406 original size:80 final size:79
Alignment explanation
Indices: 50288301--50288486 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 79
50288291 AGTAACTCAT
* * *
50288301 ACAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 ACAAAGCCTTCGGGACTT-ACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
50288364 GGAATTAGT-A-TCTCGC
63 GGAATTAGTCACT-TAGC
**
50288380 ACAAAGGCCTTCGGGACTTGACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTT-ACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
50288445 GATTTAGTCACTTAGC
64 GAATTAGTCACTTAGC
50288461 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTA-CCCGGA
50288487 CAGCGTTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 12 0.13
80 71 0.76
81 9 0.10
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
ATTAGTCACTTAGC
Found at i:50296128 original size:39 final size:40
Alignment explanation
Indices: 50296085--50296252 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
50296075 CTCGTTCAAG
* * * *
50296085 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
50296124 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
50296164 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
50296204 GGCCTTCGGGACTTGACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
50296244 TGCCTTCGG
1 TGCCTTCGG
50296253 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 26 0.24
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:50296174 original size:40 final size:40
Alignment explanation
Indices: 50296122--50296306 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
50296112 TAACTCATAC
* *
50296122 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
50296162 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* *
50296202 AAGGCCTTCGGGACTTGACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
** * ** *
50296242 AATGCCTTC-GGATCTTAGTCCGGATTTTAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGA-ATTAGAAAC-TCGCACA
*
50296284 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50296307 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 6 0.05
40 83 0.69
41 21 0.17
42 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:50296184 original size:79 final size:79
Alignment explanation
Indices: 50296085--50296306 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 79
50296075 CTCGTTCAAG
* * * *
50296085 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATACAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA-ATT
*
50296150 AA-AACTCGCACGAA
65 AATAACTCGCACAAA
* * * * *
50296164 TGCCTTCGGGACTTAACCCGG-AATTAGTATCTCGCACAAAGGCCTTCGGGACTTGACCCGGAAT
1 TGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAAT
50296228 TAATAACTCGCACAAA
64 TAATAACTCGCACAAA
* * * * *
50296244 TGCCTTC-GGATCTTAGTCCGGATTTTAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
50296307 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.01
79 38 0.33
80 46 0.40
81 25 0.22
82 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:50307350 original size:43 final size:43
Alignment explanation
Indices: 50307302--50307387 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
50307292 GTCATAGGTA
*
50307302 TCGCATCCACAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
* *
50307345 TCGCATCCATAATGAATTCAGACCACTCAACGAGCTCGGATGC
1 TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
50307388 GACATATCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.19
Consensus pattern (43 bp):
TCGCATCCACAATGAACTCAGACCACTCAACGAGCTCGGATGC
Found at i:50309755 original size:29 final size:29
Alignment explanation
Indices: 50309720--50309793 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
50309710 GTTGTGAGAT
* *
50309720 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
50309749 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
50309778 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50309794 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:50316542 original size:29 final size:29
Alignment explanation
Indices: 50316508--50316581 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50316498 TAATCAACCG
*
50316508 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
50316537 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
50316566 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
50316582 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:50324557 original size:29 final size:29
Alignment explanation
Indices: 50324523--50324596 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
50324513 TAATCAACCG
*
50324523 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
50324552 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
50324581 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
50324597 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:50327272 original size:12 final size:13
Alignment explanation
Indices: 50327246--50327275 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
50327236 TATTATTTTT
50327246 TGTGTTTACAGTA
1 TGTGTTTACAGTA
50327259 TGTGTTTA-AGTA
1 TGTGTTTACAGTA
50327271 TGTGT
1 TGTGT
50327276 GAAAGTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (13 bp):
TGTGTTTACAGTA
Found at i:50337106 original size:24 final size:24
Alignment explanation
Indices: 50337079--50337185 Score: 110
Period size: 24 Copynumber: 4.5 Consensus size: 24
50337069 GTACTAGATA
50337079 TGCGGATTTGAGTGGCACTATGTG
1 TGCGGATTTGAGTGGCACTATGTG
* *
50337103 TGCGTATTTGTGTGGCACTATGTG
1 TGCGGATTTGAGTGGCACTATGTG
* * *
50337127 TGCGTATATGTA-TGGCACTATGTA
1 TGCGGATTTG-AGTGGCACTATGTG
* *
50337151 TGCGGAATT-ATTTGGCACTATGTG
1 TGCGGATTTGA-GTGGCACTATGTG
*
50337175 TGCGGAGTTGA
1 TGCGGATTTGA
50337186 ATCGTAGTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
22 1 0.01
24 67 0.97
25 1 0.01
ACGTcount: A:0.19, C:0.12, G:0.33, T:0.36
Consensus pattern (24 bp):
TGCGGATTTGAGTGGCACTATGTG
Found at i:50337126 original size:12 final size:12
Alignment explanation
Indices: 50337090--50337149 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
50337080 GCGGATTTGA
50337090 GTGGCACTATGT
1 GTGGCACTATGT
* *
50337102 GTGCGTA-TTTGT
1 GTG-GCACTATGT
50337114 GTGGCACTATGT
1 GTGGCACTATGT
*
50337126 GTGCGTA-TATGT
1 GTG-GCACTATGT
*
50337138 ATGGCACTATGT
1 GTGGCACTATGT
50337150 ATGCGGAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
11 4 0.11
12 29 0.78
13 4 0.11
ACGTcount: A:0.17, C:0.13, G:0.32, T:0.38
Consensus pattern (12 bp):
GTGGCACTATGT
Found at i:50340945 original size:46 final size:46
Alignment explanation
Indices: 50340895--50341067 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
50340885 TGGTTAAGCA
*
50340895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* * *
50340941 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AGA--A--CG
* *
50340988 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
* *
50341034 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50341068 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACG
Found at i:50341051 original size:93 final size:93
Alignment explanation
Indices: 50340892--50341062 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50340882 GGATGGTTAA
* *
50340892 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
50340957 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
50340985 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
50341050 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50341063 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:50352972 original size:22 final size:23
Alignment explanation
Indices: 50352919--50352972 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 23
50352909 GTTGATAAAT
50352919 AGTAAGCTCTATTGAGCTGAAAAC
1 AGTAAGCTCTATTGAGCTG-AAAC
*
50352943 GGTAAGCTCTATTGAGCTG-AAC
1 AGTAAGCTCTATTGAGCTGAAAC
50352965 AGTAAGCT
1 AGTAAGCT
50352973 TCCAGTAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 10 0.36
24 18 0.64
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAC
Found at i:50362371 original size:8 final size:8
Alignment explanation
Indices: 50362358--50362390 Score: 52
Period size: 7 Copynumber: 4.4 Consensus size: 8
50362348 GACTTGTTCT
50362358 TAAAAAAA
1 TAAAAAAA
50362366 T-AAAAAA
1 TAAAAAAA
50362373 T-AAAAAA
1 TAAAAAAA
50362380 TAAAAAAA
1 TAAAAAAA
50362388 TAA
1 TAA
50362391 TACATGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 14 0.58
8 10 0.42
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:50362377 original size:6 final size:7
Alignment explanation
Indices: 50362360--50362386 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
50362350 CTTGTTCTTA
50362360 AAAAAAT
1 AAAAAAT
50362367 AAAAAAT
1 AAAAAAT
50362374 AAAAAAT
1 AAAAAAT
50362381 AAAAAA
1 AAAAAA
50362387 ATAATACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:50367833 original size:16 final size:18
Alignment explanation
Indices: 50367804--50367843 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
50367794 AGTTCATTTC
50367804 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
50367820 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
50367838 GGTAGT
1 GGTAGT
50367844 TCGAGCATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:50368255 original size:26 final size:26
Alignment explanation
Indices: 50368226--50368278 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
50368216 TTTACAGTTT
50368226 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
50368252 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
50368278 T
1 T
50368279 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:50380843 original size:48 final size:48
Alignment explanation
Indices: 50380718--50380865 Score: 185
Period size: 48 Copynumber: 3.1 Consensus size: 48
50380708 TTGATATTGG
* * * *
50380718 GAGATATGTATGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC
1 GAGATATTTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
* * *
50380766 -A-ATA-TGAGAGCCAGTGTAAGATATGTCTGGGACATACATCGGCCTC
1 GAGATATTTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
* *
50380812 GAGATATTTAAGCCAGTGTAAGACATGTCTGGGACATGGATTGGCCTC
1 GAGATATTTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
50380860 GAGATA
1 GAGATA
50380866 GACAAGTTAG
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 36 0.43
47 2 0.02
48 43 0.51
49 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
GAGATATTTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
Found at i:50380878 original size:48 final size:47
Alignment explanation
Indices: 50380732--50380883 Score: 173
Period size: 48 Copynumber: 3.2 Consensus size: 47
50380722 TATGTATGCT
* *
50380732 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-GAAAGCC
* * **
50380778 AGTGTAAGATATGTCTGGGACATACATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-GAAAGCC
* * **
50380826 AGTGTAAGACATGTCTGGGACATGGATTGGCCTCGAGATAGACAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGA-AAGCC
50380874 AGTGTAAGAC
1 AGTGTAAGAC
50380884 CTATCTAGGA
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
46 31 0.35
47 1 0.01
48 57 0.64
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGAAAGCC
Found at i:50383268 original size:46 final size:46
Alignment explanation
Indices: 50383212--50383379 Score: 200
Period size: 46 Copynumber: 3.6 Consensus size: 46
50383202 TGTTTGGGCA
*
50383212 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
* * *
50383258 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAA-T--G
* *
50383303 CATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
*
50383351 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
50383380 GGTTATGGGC
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
Found at i:50383367 original size:93 final size:93
Alignment explanation
Indices: 50383208--50383380 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
50383198 AGGATGTTTG
* *
50383208 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAACTCGTTGAG
50383273 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
50383301 GGCATCCGAACTCGTTGAGTTGAGTCCGGGTTCACTCATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAACTCGTTGAG
50383366 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
50383381 GTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50387290 original size:392 final size:392
Alignment explanation
Indices: 50386566--50387348 Score: 1503
Period size: 392 Copynumber: 2.0 Consensus size: 392
50386556 AGATGAGTTC
50386566 GGAAGCTTTGAATATTTGGCACCTTTGGAAGCTTAATTCGGGTATGTGTTTTACTCGGTTTTTGA
1 GGAAGCTTTGAATATTTGGCACCTTTGGAAGCTTAATTCGGGTATGTGTTTTACTCGGTTTTTGA
50386631 TAATTTTTACGTTTTTGAGATCGTTGCTTCGAGTACTAGTAAACCCATGCCTTAATTTTTGGATT
66 TAATTTTTACGTTTTTGAGATCGTTGCTTCGAGTACTAGTAAACCCATGCCTTAATTTTTGGATT
50386696 TAATGAAGAATTTGAGATTTTCCATTGTTTATTATGTGATGAAATTGTTGTTTGATGATGAATAA
131 TAATGAAGAATTTGAGATTTTCCATTGTTTATTATGTGATGAAATTGTTGTTTGATGATGAATAA
50386761 TAAATCTTTGATGTTTGATTTTCATGTTTAATTAAGTGATTTTTGATAAAAATGTGTATTAAGGA
196 TAAATCTTTGATGTTTGATTTTCATGTTTAATTAAGTGATTTTTGATAAAAATGTGTATTAAGGA
50386826 ATAAATTTAGAAATTTGTAAATCGAGGGGTCAAAACGTGAAATAAATAAAAGAAATGGGTTGCTA
261 ATAAATTTAGAAATTTGTAAATCGAGGGGTCAAAACGTGAAATAAATAAAAGAAATGGGTTGCTA
50386891 AAGACCTAAGATAAATTCGGCCTAACATGGGTTTGATGAAATTTTGAGTAATTTGTGTTATTTTG
326 AAGACCTAAGATAAATTCGGCCTAACATGGGTTTGATGAAATTTTGAGTAATTTGTGTTATTTTG
50386956 AT
391 AT
*
50386958 GGAAGCTTTGAATATTTGGCACCTTTGGAAGCTTAATTTGGGTATGTGTTTTACTCGGTTTTTGA
1 GGAAGCTTTGAATATTTGGCACCTTTGGAAGCTTAATTCGGGTATGTGTTTTACTCGGTTTTTGA
50387023 TAATTTTTACGTTTTTGAGATCGTTGCTTCGAGTACTAGTAAACCCATGCCTTAATTTTTGGATT
66 TAATTTTTACGTTTTTGAGATCGTTGCTTCGAGTACTAGTAAACCCATGCCTTAATTTTTGGATT
*
50387088 TAATGAAGAATTTGAGTTTTTCCATTGTTTATTATGTGATGAAATTGTTGTTTGATGATGAATAA
131 TAATGAAGAATTTGAGATTTTCCATTGTTTATTATGTGATGAAATTGTTGTTTGATGATGAATAA
*
50387153 TAAATCTTTGATGTTTGATTTTCATGTTTAATTAAGTGATTTTTGATAAAAATGTGTATTGAGGA
196 TAAATCTTTGATGTTTGATTTTCATGTTTAATTAAGTGATTTTTGATAAAAATGTGTATTAAGGA
* * *
50387218 CTAAATTTAGAAATTTGTAAATTGAGGGGTCAAAACGTGAAATAAATAAAAGAAATGGGTTGCTG
261 ATAAATTTAGAAATTTGTAAATCGAGGGGTCAAAACGTGAAATAAATAAAAGAAATGGGTTGCTA
*
50387283 GAGACCTAAGATAAATTCGGCCTAACATGGGTTTGATGAAATTTTGAGTAATTTGTGTTATTTTG
326 AAGACCTAAGATAAATTCGGCCTAACATGGGTTTGATGAAATTTTGAGTAATTTGTGTTATTTTG
50387348 A
391 A
50387349 AATAGGGACT
Statistics
Matches: 384, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
392 384 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (392 bp):
GGAAGCTTTGAATATTTGGCACCTTTGGAAGCTTAATTCGGGTATGTGTTTTACTCGGTTTTTGA
TAATTTTTACGTTTTTGAGATCGTTGCTTCGAGTACTAGTAAACCCATGCCTTAATTTTTGGATT
TAATGAAGAATTTGAGATTTTCCATTGTTTATTATGTGATGAAATTGTTGTTTGATGATGAATAA
TAAATCTTTGATGTTTGATTTTCATGTTTAATTAAGTGATTTTTGATAAAAATGTGTATTAAGGA
ATAAATTTAGAAATTTGTAAATCGAGGGGTCAAAACGTGAAATAAATAAAAGAAATGGGTTGCTA
AAGACCTAAGATAAATTCGGCCTAACATGGGTTTGATGAAATTTTGAGTAATTTGTGTTATTTTG
AT
Found at i:50387848 original size:41 final size:41
Alignment explanation
Indices: 50387802--50387980 Score: 272
Period size: 41 Copynumber: 4.3 Consensus size: 41
50387792 TATTCGGGCT
*
50387802 TTATTGCCTTGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
50387843 TTATTGCCTAGCAGGCTTTGTGCCGGCGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
50387884 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
*
50387927 TTATTGCCTAGCAGGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
50387968 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
50387981 AATTTTATGT
Statistics
Matches: 128, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
40 2 0.02
41 86 0.67
42 3 0.02
43 37 0.29
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:50387923 original size:84 final size:82
Alignment explanation
Indices: 50387802--50387980 Score: 272
Period size: 84 Copynumber: 2.2 Consensus size: 82
50387792 TATTCGGGCT
* * *
50387802 TTATTGCCTTGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTGCC
50387867 GGCGTATTATA-TCAGGC
66 GGCGTATTATACT-AGGC
50387884 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTG
1 TTATTGCCTAGCAGGC-TT-TATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTG
*
50387949 CCGGTGTATTATACTAGGC
64 CCGGCGTATTATACTAGGC
50387968 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
50387981 AATTTTATGT
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
82 15 0.17
83 3 0.03
84 70 0.79
85 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (82 bp):
TTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTCTGTGCC
GGCGTATTATACTAGGC
Found at i:50391889 original size:16 final size:16
Alignment explanation
Indices: 50391864--50391909 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
50391854 ATGTATCAGC
* *
50391864 AAAAGTCGAAATGCTG
1 AAAAGCCGAAAAGCTG
50391880 AAAAGCCGAAAAGCTG
1 AAAAGCCGAAAAGCTG
*
50391896 AAATGCCGAAAAGC
1 AAAAGCCGAAAAGC
50391910 CAAAAGTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAAAGCTG
Found at i:50391890 original size:8 final size:8
Alignment explanation
Indices: 50391864--50391915 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
50391854 ATGTATCAGC
*
50391864 AAAAGTCG
1 AAAAGCCG
* *
50391872 AAATGCTG
1 AAAAGCCG
50391880 AAAAGCCG
1 AAAAGCCG
*
50391888 AAAAGCTG
1 AAAAGCCG
*
50391896 AAATGCCG
1 AAAAGCCG
50391904 AAAAGCC-
1 AAAAGCCG
50391911 AAAAG
1 AAAAG
50391916 TTTGGCTACG
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
7 5 0.14
8 30 0.86
ACGTcount: A:0.50, C:0.17, G:0.23, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:50391898 original size:24 final size:23
Alignment explanation
Indices: 50391863--50391915 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
50391853 TATGTATCAG
*
50391863 CAAAAG-TCGAAATGCTGAAAAGC
1 CAAAAGCT-GAAATGCCGAAAAGC
50391886 CGAAAAGCTGAAATGCCGAAAAGC
1 C-AAAAGCTGAAATGCCGAAAAGC
50391910 CAAAAG
1 CAAAAG
50391916 TTTGGCTACG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 6 0.22
24 20 0.74
25 1 0.04
ACGTcount: A:0.49, C:0.19, G:0.23, T:0.09
Consensus pattern (23 bp):
CAAAAGCTGAAATGCCGAAAAGC
Found at i:50392065 original size:17 final size:18
Alignment explanation
Indices: 50392032--50392067 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50392022 TATGGGCCGG
50392032 AATGGGCTAAATGGGCCC
1 AATGGGCTAAATGGGCCC
*
50392050 AATGGGCT-ATTGGGCCC
1 AATGGGCTAAATGGGCCC
50392067 A
1 A
50392068 TAATAGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.25, C:0.22, G:0.33, T:0.19
Consensus pattern (18 bp):
AATGGGCTAAATGGGCCC
Found at i:50392184 original size:29 final size:28
Alignment explanation
Indices: 50392125--50392210 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
50392115 GTGAGCATGA
* *
50392125 ATATGAATGTGATTGGGCCTAACGGGTC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
50392153 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
50392182 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
50392210 A
1 A
50392211 GATACAGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.53
29 24 0.47
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:50407913 original size:13 final size:13
Alignment explanation
Indices: 50407895--50407928 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
50407885 GCATCTATAT
*
50407895 ATTTATTTTGTAA
1 ATTTATTCTGTAA
50407908 ATTTATTCTGTAA
1 ATTTATTCTGTAA
50407921 ATTTATTC
1 ATTTATTC
50407929 CTTGATGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (13 bp):
ATTTATTCTGTAA
Found at i:50413617 original size:56 final size:56
Alignment explanation
Indices: 50413531--50413642 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
50413521 TGTTCAAAGA
50413531 TAGAGTTTGTGTACCCAAGAACAAAGAATTGACCTAGAAGATTTTAGATGAGGCAC
1 TAGAGTTTGTGTACCCAAGAACAAAGAATTGACCTAGAAGATTTTAGATGAGGCAC
50413587 TAGAGTTTGTGTACCCAAGAACAAAGAATTGACCTAGAAGATTTTAGATGAGGCAC
1 TAGAGTTTGTGTACCCAAGAACAAAGAATTGACCTAGAAGATTTTAGATGAGGCAC
50413643 ATAGCGGGTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (56 bp):
TAGAGTTTGTGTACCCAAGAACAAAGAATTGACCTAGAAGATTTTAGATGAGGCAC
Found at i:50421227 original size:42 final size:43
Alignment explanation
Indices: 50421181--50421278 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
50421171 TTCGATTTTG
* * *
50421181 TGTAAAACCATGTCTG-GAAAATTGGCATC-ATATTTGATTTCA
1 TGTAAGACCATGTCTGCG-AAAGTGGCATCGATATTTGATTACA
* * * *
50421223 TGTAAGACCCTATCTGCGACAGTGGTATCGATATTTGATTACA
1 TGTAAGACCATGTCTGCGAAAGTGGCATCGATATTTGATTACA
50421266 TGTAAGACCATGT
1 TGTAAGACCATGT
50421279 GTAGGACGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 21 0.47
43 24 0.53
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGCGAAAGTGGCATCGATATTTGATTACA
Found at i:50428259 original size:46 final size:46
Alignment explanation
Indices: 50428180--50428347 Score: 157
Period size: 45 Copynumber: 3.6 Consensus size: 46
50428170 GGGGTAGGGT
* *
50428180 GCCGATGCCATATCCCAGACATGGTCTTACACTGACTATCAAT-TCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTAAC-ATCTCG-AG
* * *
50428228 GCCGATGCATGTCCCAGACATATCTTACACTGGCTAACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTAACATCTCGAG
* * *
50428274 GCCG-TGCATGTCCCAGACATGTCATACACTAGCACT--CGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTAACATCTCGAG
50428319 GCCGATGCCATGTCCCAGACATTGTCTTA
1 GCCGATG-CATGTCCCAGACA-TGTCTTA
50428348 TATAGGCTCT
Statistics
Matches: 103, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
45 38 0.37
46 24 0.23
47 28 0.27
48 13 0.13
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTAACATCTCGAG
Found at i:50449495 original size:27 final size:28
Alignment explanation
Indices: 50449411--50449508 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
50449401 CATGAGATTG
* * * *
50449411 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
50449440 GCACTGAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50449468 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50449495 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50449509 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50449519 original size:27 final size:27
Alignment explanation
Indices: 50449439--50449522 Score: 105
Period size: 27 Copynumber: 3.0 Consensus size: 27
50449429 TAAATTGTAC
*
50449439 AGCACTGAGTGTGCGAGTTTGATTATAT
1 AGCACTGAGTGTGCGA-CTTGATTATAT
* *
50449467 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTGAGTGTGCGACTTGATTATAT
*
50449494 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTGAGTGTGC-GACTTGAT-TATAT
50449523 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.47
28 21 0.43
29 5 0.10
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTGAGTGTGCGACTTGATTATAT
Found at i:50457454 original size:27 final size:28
Alignment explanation
Indices: 50457370--50457467 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
50457360 CATGAGATTG
* * * *
50457370 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
50457399 GCACTGAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50457427 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50457454 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50457468 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50457478 original size:27 final size:27
Alignment explanation
Indices: 50457398--50457481 Score: 105
Period size: 27 Copynumber: 3.0 Consensus size: 27
50457388 TAAATTGTAC
*
50457398 AGCACTGAGTGTGCGAGTTTGATTATAT
1 AGCACTGAGTGTGCGA-CTTGATTATAT
* *
50457426 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTGAGTGTGCGACTTGATTATAT
*
50457453 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTGAGTGTGC-GACTTGAT-TATAT
50457482 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.47
28 21 0.43
29 5 0.10
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTGAGTGTGCGACTTGATTATAT
Found at i:50458950 original size:1 final size:1
Alignment explanation
Indices: 50458946--50458981 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
50458936 TAATATTTTT
*
50458946 AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50458982 TCTAGTAGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.97, C:0.00, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:50459227 original size:15 final size:16
Alignment explanation
Indices: 50459209--50459248 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
50459199 AATTGGAAAG
50459209 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
50459224 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
50459240 ATGTAAAAG
1 ATG-AAAAG
50459249 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:50462369 original size:16 final size:16
Alignment explanation
Indices: 50462348--50462378 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50462338 GGGTGGCGTG
*
50462348 TGCGGCATACGCCGTA
1 TGCGGCACACGCCGTA
50462364 TGCGGCACACGCCGT
1 TGCGGCACACGCCGT
50462379 GTGACAGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (16 bp):
TGCGGCACACGCCGTA
Found at i:50463400 original size:22 final size:21
Alignment explanation
Indices: 50463374--50463436 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
50463364 TCGAAATACT
50463374 AACAGAGGCACCGTAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
50463395 ATACAGAGGCACC-TAAGTG-AA
1 A-ACAGAGGCACCGT-AGTGCAA
** *
50463416 AATTGAGGCACCGAAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
50463437 TCTCATACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 13 0.37
21 7 0.20
22 15 0.43
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.13
Consensus pattern (21 bp):
AACAGAGGCACCGTAGTGCAA
Found at i:50476138 original size:47 final size:45
Alignment explanation
Indices: 50476021--50476288 Score: 200
Period size: 48 Copynumber: 5.7 Consensus size: 45
50476011 GGGTGACATG
* * * *
50476021 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCA--CATTT
1 TGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGG-CATTGATTA
* *
50476067 TGTATGCTAGTGTAAGACCATGTTGGACATGGCATCAGCATTGATTA
1 TG-A-GCCAGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTA
* * ** *
50476114 TAAGAGCCATTGTAAGACCTTGTTGGACATGGCATCGGTGTTGATTG
1 T--GAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTA
* *
50476161 TGAGCCAGTGTAAGACCATGTTGGACATGGCCTCGGCATTGA-GA
1 TGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTA
* * * * * * *
50476205 CGAGAGCTAGTGTAAGGCCATGTCTGGGACATGGCATCGGCCTCGACATG
1 --TGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCATTGA-TTA
*
50476255 TGAGCCCGTGTAAGACCATGTCTGGGACATGGCA
1 TGAGCCAGTGTAAGACCATGT-T-GGACATGGCA
50476289 GTGGTAATTC
Statistics
Matches: 180, Mismatches: 30, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
45 38 0.21
46 32 0.18
47 43 0.24
48 66 0.37
49 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (45 bp):
TGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTA
Found at i:50476177 original size:92 final size:94
Alignment explanation
Indices: 50476022--50476288 Score: 276
Period size: 92 Copynumber: 2.8 Consensus size: 94
50476012 GGTGACATGT
* * * *
50476022 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG-C-C-ACATTTTGTATGCTAGTGTAAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACA-TGTG-A-GCCAGTGTAAGA
* *
50476084 CCATGTTGGACATGGCATCAGCATTGATTATAA
63 CCATGTTGGACATGGCATCAGCATTGA-GACAA
* * ** * *
50476117 GAGCCATTGTAAGACCTTGT-T-GGACATGGCATCGGTGTTGA-TTGTGAGCCAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCA
* * *
50476179 TGTTGGACATGGCCTCGGCATTGAGACGA
66 TGTTGGACATGGCATCAGCATTGAGACAA
* * *
50476208 GAGCTAGTGTAAGGCCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCCGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCA
50476273 TGTCTGGGACATGGCA
66 TGT-T-GGACATGGCA
50476289 GTGGTAATTC
Statistics
Matches: 140, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
91 18 0.13
92 37 0.26
93 31 0.22
94 26 0.19
95 18 0.13
96 10 0.07
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (94 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCA
TGTTGGACATGGCATCAGCATTGAGACAA
Found at i:50476245 original size:48 final size:45
Alignment explanation
Indices: 50476075--50476288 Score: 212
Period size: 48 Copynumber: 4.6 Consensus size: 45
50476065 TTTGTATGCT
* *
50476075 AGTGTAAGACCATGTTGGACATGGCATCAGCATTGATTATAAGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGA--ATGAGAGCC
* * ** * *
50476122 ATTGTAAGACCTTGTTGGACATGGCATCGGTGTTGATTGTGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGAATGAGAGCC
* * *
50476167 AGTGTAAGACCATGTTGGACATGGCCTCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCATTGA-ATGAGAGCC
* * * *
50476213 AGTGTAAGGCCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGCATTGA-ATGAGAGCC
*
50476261 CGTGTAAGACCATGTCTGGGACATGGCA
1 AGTGTAAGACCATGT-T-GGACATGGCA
50476289 GTGGTAATTC
Statistics
Matches: 137, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
45 37 0.27
46 19 0.14
47 32 0.23
48 49 0.36
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCATTGAATGAGAGCC
Found at i:50485062 original size:19 final size:20
Alignment explanation
Indices: 50485038--50485075 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
50485028 GGGGGTTTTA
*
50485038 GATTCAGTTTC-GATTTGGG
1 GATTCAATTTCAGATTTGGG
50485057 GATTCAATTTCAGATTTGG
1 GATTCAATTTCAGATTTGG
50485076 TTTGTGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.42
Consensus pattern (20 bp):
GATTCAATTTCAGATTTGGG
Found at i:50493596 original size:20 final size:20
Alignment explanation
Indices: 50493558--50493596 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50493548 TATTTCTCTA
*
50493558 ACCATAAACATGCATAATCT
1 ACCATAAACATGCAAAATCT
50493578 ACCATTAAACAT-CAAAATC
1 ACCA-TAAACATGCAAAATC
50493597 CACAAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.49, C:0.26, G:0.03, T:0.23
Consensus pattern (20 bp):
ACCATAAACATGCAAAATCT
Found at i:50496736 original size:27 final size:27
Alignment explanation
Indices: 50496717--50497132 Score: 591
Period size: 27 Copynumber: 15.4 Consensus size: 27
50496707 ATTACCAAAG
* *
50496717 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
50496744 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50496771 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50496798 TACCCTCGATTTATAGAATTACAATTT
1 TACCCTCGATTTATAGAATTACCATTT
50496825 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
50496852 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
50496879 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50496906 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50496933 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50496960 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50496987 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
***
50497014 TACCCTCGATTTATAGAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* * *
50497041 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50497068 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
50497095 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCATTT
50497122 TACCCTCGATT
1 TACCCTCGATT
50497133 GTGAAATTAT
Statistics
Matches: 351, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 349 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:50497194 original size:27 final size:27
Alignment explanation
Indices: 50497164--50497262 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
50497154 TGTAGGATAG
*
50497164 AATTACCAAAATACCAC-TAGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
*
50497191 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* * **
50497218 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAATTTGTAA
50497245 AATTA-CAGAAATACCCTT
1 AATTACCA-AAATACCCTT
50497263 GACTTTCTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.05
27 57 0.93
28 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:50497408 original size:27 final size:27
Alignment explanation
Indices: 50497365--50497438 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
50497355 AAATGACTAA
*
50497365 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
50497392 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
50497419 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
50497439 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:50498278 original size:25 final size:24
Alignment explanation
Indices: 50498244--50498313 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
50498234 AAGAAGTGCT
50498244 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTCTGCCCCAGTTTACC
* *
50498268 GAAAAGGGCTCTGCCTCAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTACC
*
50498293 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
50498314 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTACC
Found at i:50498520 original size:42 final size:42
Alignment explanation
Indices: 50498461--50498552 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
50498451 TAGTCTCCCC
* ** *
50498461 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
50498503 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
50498545 AAAAGGGC
1 AAATGGGC
50498553 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:50498617 original size:31 final size:31
Alignment explanation
Indices: 50498576--50498747 Score: 290
Period size: 31 Copynumber: 5.5 Consensus size: 31
50498566 CGTTTACAGT
* *
50498576 AAAGGTTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
50498607 AAAGGCTTCGGCCGAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50498638 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
50498669 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
50498700 AAAGGCTTTGGCCGAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
50498731 AAAGGCTTCGGCTCAGT
1 AAAGGCTTCGGCCCAGT
50498748 AACCGTTAAA
Statistics
Matches: 133, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 133 1.00
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:50498805 original size:93 final size:93
Alignment explanation
Indices: 50498576--50498781 Score: 260
Period size: 93 Copynumber: 2.2 Consensus size: 93
50498566 CGTTTACAGT
* * ** *
50498576 AAAGGTTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCGAGTGATATGATTTATGAAAA
1 AAAGGCTTCGGCCCAGTGATATGATAGATGAAAAGGCTTTGGCCGAGTGATATGATTTATGAAAA
* * *
50498641 GGCTTCGGCCCAGTGATATGATTTATGA
66 GGCTTCGGCCCAGTGATACGATTAACGA
**
50498669 AAAGGCTTCGGCCCAGTGATATGATTTATGAAAAGGCTTTGGCCGAGTGATATGATTTATGAAAA
1 AAAGGCTTCGGCCCAGTGATATGATAGATGAAAAGGCTTTGGCCGAGTGATATGATTTATGAAAA
*
50498734 GGCTTCGGCTCAGT-A-ACCG-TTAAACG-
66 GGCTTCGGCCCAGTGATA-CGATT-AACGA
50498760 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
50498782 TCAAGACTAA
Statistics
Matches: 104, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
90 5 0.05
91 20 0.19
92 4 0.04
93 75 0.72
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (93 bp):
AAAGGCTTCGGCCCAGTGATATGATAGATGAAAAGGCTTTGGCCGAGTGATATGATTTATGAAAA
GGCTTCGGCCCAGTGATACGATTAACGA
Found at i:50501067 original size:27 final size:27
Alignment explanation
Indices: 50501048--50501409 Score: 474
Period size: 27 Copynumber: 13.4 Consensus size: 27
50501038 ATTACCAAAG
* *
50501048 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
50501075 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
50501102 TACCCTCAATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50501129 TACCCTCGATTTATAGAATTACAATTT
1 TACCCTCGATTTATAGAATTACCATTT
50501156 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50501183 TACCCTCGATTTATAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50501210 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
50501237 TACCCTCGATTTATGGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
50501264 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
***
50501291 TACCCTCGATTTATAGAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
* * *
50501318 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
50501345 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
50501372 TACCCTC-AGTTTACAAAATTATCGTTT
1 TACCCTCGA-TTTATAGAATTACCATTT
50501399 TACCCTCGATT
1 TACCCTCGATT
50501410 GTGAAATTAT
Statistics
Matches: 293, Mismatches: 40, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 291 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:50501471 original size:27 final size:27
Alignment explanation
Indices: 50501441--50501539 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
50501431 TGTAGGATAG
*
50501441 AATTACCAAAATACCAC-TAGTTTG-AGA
1 AATTACCAAAATACC-CTTAATTTGTA-A
*
50501468 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* * **
50501495 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAATTTGTAA
50501522 AATTA-CAGAAATACCCTT
1 AATTACCA-AAATACCCTT
50501540 GACTTTTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.05
27 57 0.93
28 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:50501686 original size:28 final size:27
Alignment explanation
Indices: 50501655--50501716 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
50501645 ACCCCTAATA
50501655 GGTAAAAAGACCGTAAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAA-CCCCTGTAG
** * * *
50501683 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAAAACCCCTGTAG
50501710 GGTAAAA
1 GGTAAAA
50501717 TGATGAATAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAACCCCTGTAG
Found at i:50501708 original size:27 final size:28
Alignment explanation
Indices: 50501663--50501715 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
50501653 TAGGTAAAAA
50501663 GACCGTAAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAAGCCCCTGTAGGGTAAAGT
* * *
50501691 GACCGTAATA-CCCTTGTATGGTAAA
1 GACCGTAAAAGCCCCTGTAGGGTAAA
50501716 ATGATGAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (28 bp):
GACCGTAAAAGCCCCTGTAGGGTAAAGT
Done.