Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 153 of 320
Found at i:50502556 original size:25 final size:24
Alignment explanation
Indices: 50502522--50502591 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
50502512 AGGAAGTGCT
50502522 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTCTGCCCCAGTTTACC
*
50502546 GAAAAGGGCTCTGCCCCAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTACC
*
50502571 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
50502592 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTACC
Found at i:50502798 original size:42 final size:42
Alignment explanation
Indices: 50502739--50502830 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
50502729 TAGTCTCCCC
* ** *
50502739 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
50502781 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
50502823 AAATGGGC
1 AAATGGGC
50502831 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:50507814 original size:93 final size:93
Alignment explanation
Indices: 50507700--50507871 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
50507690 CGCCCATAAG
* *
50507700 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50507765 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
50507793 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50507858 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50507872 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50507868 original size:46 final size:46
Alignment explanation
Indices: 50507693--50507868 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
50507683 TGTAACCCGC
* * * *
50507693 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
50507739 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50507789 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50507832 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50507869 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50507887 original size:46 final size:46
Alignment explanation
Indices: 50507742--50507880 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
50507732 TTCGCATCCA
50507742 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
50507790 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
50507835 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
50507881 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:50509453 original size:49 final size:49
Alignment explanation
Indices: 50509376--50509475 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
50509366 ATGAGACAGA
* *
50509376 ATTATGATGGATTTCGTAACTAGCTTACCTTTGACTCCAAAGAAGAAAG
1 ATTACGATGGATTTCGTAACTAGATTACCTTTGACTCCAAAGAAGAAAG
* *
50509425 ATTACGATGGATTTCGTAACTTGATTACCTTTGACTCCGAAGAAGAAAG
1 ATTACGATGGATTTCGTAACTAGATTACCTTTGACTCCAAAGAAGAAAG
50509474 AT
1 AT
50509476 GCTGTTTGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (49 bp):
ATTACGATGGATTTCGTAACTAGATTACCTTTGACTCCAAAGAAGAAAG
Found at i:50511581 original size:79 final size:81
Alignment explanation
Indices: 50511446--50511627 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 81
50511436 AATGATGTCT
* * *
50511446 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
*
50511510 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
50511526 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
*
50511588 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
50511605 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50511628 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
GCGAGATACTATAACC
Found at i:50511641 original size:40 final size:40
Alignment explanation
Indices: 50511446--50511627 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
50511436 AATGATGTCT
* * * *
50511446 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * * *
50511486 GGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
50511526 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
* *
50511565 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
50511605 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50511628 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:50511649 original size:79 final size:79
Alignment explanation
Indices: 50511498--50511660 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
50511488 ACTAAGATCT
* * **
50511498 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
50511563 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
50511577 GAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
50511640 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
50511656 GAAGG
1 GAAGG
50511661 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:50519408 original size:40 final size:39
Alignment explanation
Indices: 50519324--50519504 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 39
50519314 TTGAATGATG
* * * *
50519324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50519364 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
50519404 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50519443 TCCGGGTTAAGTCCCGAAGGCAATTGTACGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
50519484 -CCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGT-CCGAAGGCA
50519505 ATTGAACGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50519460 original size:79 final size:81
Alignment explanation
Indices: 50519324--50519504 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
50519314 TTGAATGATG
* *
50519324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
50519388 TGTGCGAGATACTA-A
66 TGTACGAGATACTATA
* * * **
50519403 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
50519465 ATTGTACGAGTTACTATA
64 ATTGTACGAGATACTATA
* *
50519483 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
50519505 ATTGAACGAG
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.65
80 29 0.34
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTACGAGATACTATA
Found at i:50519530 original size:79 final size:79
Alignment explanation
Indices: 50519377--50519541 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
50519367 GGACTAAGAT
* * * * **
50519377 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTGAACGAGTTACTAA
*
50519442 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50519456 CCGAAGGCAATTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAATTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAATTGAACGAGTTA-C
* *
50519519 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50519535 CCGAAGG
1 CCGAAGG
50519542 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCAATTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50520998 original size:29 final size:29
Alignment explanation
Indices: 50520958--50521034 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
50520948 AATTATATTC
* *
50520958 ATATGGCTCATTAGGCCCAAATCACCTAA
1 ATATGGCCCATTAGGCCCAAATCACATAA
**
50520987 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAA
*
50521016 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
50521035 GTCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAA
Found at i:50524515 original size:68 final size:64
Alignment explanation
Indices: 50524406--50524590 Score: 205
Period size: 68 Copynumber: 2.8 Consensus size: 64
50524396 TACAGATAGT
** * * *
50524406 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATT
1 ATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTAC--GACA-T
*
50524471 ATG
63 A-A
* *
50524474 ATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGT-GTACAAGAGAGCTACGACATA
50524537 A
64 A
* *
50524538 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 ATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGC
50524591 CGAACTATAT
Statistics
Matches: 102, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
62 1 0.01
63 44 0.43
64 3 0.03
65 2 0.02
66 3 0.03
67 1 0.01
68 47 0.46
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTACGACATAA
Found at i:50526490 original size:6 final size:6
Alignment explanation
Indices: 50526460--50526646 Score: 98
Period size: 6 Copynumber: 30.3 Consensus size: 6
50526450 AAGAAGCATT
* * * *
50526460 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAAA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
50526509 ATCAGA ATCAGA ATCAGA ATCACA ATTAGGTG AT-AGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * * *
50526558 ATCAGGTA A-CAGA ATTAGA ATAAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
50526608 CTCAGA ATCAGT ATCAAGTA A-CCGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA AT
50526647 GTGAATGAAA
Statistics
Matches: 137, Mismatches: 27, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
5 9 0.07
6 109 0.80
7 13 0.09
8 6 0.04
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:50526522 original size:37 final size:37
Alignment explanation
Indices: 50526469--50526562 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
50526459 TATCAGAACT
* *
50526469 AGAATCAAAATGAGAATCAGAATCAAAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
* * *
50526506 AGAATCAGAATCAGAATCAGAATCACAATTAGGTGAT
1 AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
*
50526543 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
50526563 GTAACAGAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAAAATCAGGTGAC
Found at i:50526547 original size:31 final size:31
Alignment explanation
Indices: 50526512--50526623 Score: 95
Period size: 31 Copynumber: 3.6 Consensus size: 31
50526502 TGACAGAATC
50526512 AGAATCAGAATCAGAATCACAATTAGGTGAT
1 AGAATCAGAATCAGAATCACAATTAGGTGAT
* * * *
50526543 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATT
1 AGAATCAGAATCAGAATCA--CAATTAGGTGA-T
* * *
50526574 AGAATAAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCACAATTAGGTGAT
* *
50526605 AGACTCAGAATCAGTATCA
1 AGAATCAGAATCAGAATCA
50526624 AGTAACCGAA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
29 2 0.03
30 2 0.03
31 54 0.87
32 2 0.03
33 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCACAATTAGGTGAT
Found at i:50526562 original size:62 final size:62
Alignment explanation
Indices: 50526481--50526646 Score: 242
Period size: 62 Copynumber: 2.7 Consensus size: 62
50526471 AATCAAAATG
** * *
50526481 AGAATCAGAATCAAAATCAGGTGACAGAATCAGAATCAGAATCAGAATCACAATTAGGTGAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCACAATTAGGTGAC
* * *
50526543 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATAAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCACAATTAGGTGAC
* * *
50526605 AGACTCAGAATCAGTATCAAGTAACCGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
50526647 GTGAATGAAA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.20
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATCACAATTAGGTGAC
Found at i:50526564 original size:25 final size:25
Alignment explanation
Indices: 50526505--50526587 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 25
50526495 AATCAGGTGA
50526505 CAGAATCA-G-AATCAGAATCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
* * * *
50526529 CACAATTAGGTGATAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
* *
50526554 CAGTATCAGGTAACAGAATTAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
*
50526579 AAGAATCAG
1 CAGAATCAG
50526588 AATCAGAATT
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
24 6 0.13
25 38 0.84
26 1 0.02
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:50526615 original size:37 final size:37
Alignment explanation
Indices: 50526543--50526615 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
50526533 ATTAGGTGAT
* *
50526543 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATA
1 AGAATCAGAATCAGAATCAGGTAACAGAATCAGAATA
* * *
50526580 AGAATCAGAATCAGAATTAGGTGACAGACTCAGAAT
1 AGAATCAGAATCAGAATCAGGTAACAGAATCAGAAT
50526616 CAGTATCAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.47, C:0.12, G:0.21, T:0.21
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATCAGAATA
Found at i:50526617 original size:25 final size:25
Alignment explanation
Indices: 50526580--50526646 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
50526570 AATTAGAATA
* * *
50526580 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAAGTAAC
* *
50526605 AGACTCAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAGAATCAAGTAAC
*
50526630 CGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
50526647 GTGAATGAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAAGTAAC
Found at i:50526816 original size:27 final size:26
Alignment explanation
Indices: 50526767--50526846 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
50526757 CATGGCTGCC
50526767 AGAATAGATATTGTGGCAAAGCCACT
1 AGAATAGATATTGTGGCAAAGCCACT
* * *
50526793 AGAACAGATATTTGTGGCATAGCCACC
1 AGAATAGATA-TTGTGGCAAAGCCACT
*
50526820 AGAAATAGATAATGTGGCAAAGCCACT
1 AG-AATAGATATTGTGGCAAAGCCACT
50526847 TAACAAAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 9 0.20
27 29 0.64
28 7 0.16
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (26 bp):
AGAATAGATATTGTGGCAAAGCCACT
Found at i:50527605 original size:28 final size:29
Alignment explanation
Indices: 50527563--50527677 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
50527553 TACCTGTATT
* *
50527563 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
50527591 TGGCCCATTAGGCCCAAATCATC-TGT-ATA
1 TGGCCCATTAGGCCCAAATCA-CAT-TCATA
* *
50527620 TGGTCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
50527649 TGGCCCGTTAGGCCC-AATTACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
50527677 T
1 T
50527678 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
28 28 0.37
29 46 0.61
30 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:50527660 original size:58 final size:57
Alignment explanation
Indices: 50527556--50527665 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 57
50527546 ATTCACATAC
* *
50527556 CTGTATTTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATCAT
1 CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
* * * *
50527613 CTGTATATGGTCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCAA
1 CTGTATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCAA
50527666 TTACATTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (57 bp):
CTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCAT
Found at i:50529526 original size:27 final size:27
Alignment explanation
Indices: 50529479--50529545 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
50529469 AACTTTAGTT
* *
50529479 TTACCAAATTACTAAAATACCCTCGAC
1 TTACAAAATTACCAAAATACCCTCGAC
** * *
50529506 TTGTAAAATTACCAAAGTACCCTCGAT
1 TTACAAAATTACCAAAATACCCTCGAC
50529533 TTACAAAATTACC
1 TTACAAAATTACC
50529546 GTTTTACCAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.28
Consensus pattern (27 bp):
TTACAAAATTACCAAAATACCCTCGAC
Found at i:50529570 original size:54 final size:54
Alignment explanation
Indices: 50529523--50530057 Score: 698
Period size: 54 Copynumber: 10.1 Consensus size: 54
50529513 ATTACCAAAG
* *
50529523 TACCCTCGATTTACAAAATTACCGTTTTACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
50529577 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
*
50529631 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
50529685 TACTCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
50529739 TACCCTCGACTTATAGAATTATCGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
*
50529793 TACCCTCGATTTACA-AATTTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAA-TTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * *
50529847 TACCCTCTATTTATAGAATTA------T----T-GTTTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
50529890 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
50529944 TACCCTCGATTCACAGAATTACCATTTTACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
* * * *
50529998 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
50530052 TACCCT
1 TACCCT
50530058 TAGGGTGTTA
Statistics
Matches: 421, Mismatches: 47, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
43 36 0.09
44 1 0.00
48 1 0.00
49 1 0.00
53 3 0.01
54 377 0.90
55 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
Found at i:50529613 original size:81 final size:81
Alignment explanation
Indices: 50529523--50530057 Score: 637
Period size: 81 Copynumber: 6.7 Consensus size: 81
50529513 ATTACCAAAG
* * * *
50529523 TACCCTCGATTTACAAAATTACCGTTTTACCATCGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
50529588 TATAGAATTACTGTTT
66 TACAGAATTACTGTTT
** *
50529604 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* *
50529669 TATAGAATTACTATTT
66 TACAGAATTACTGTTT
* * * ** *
50529685 TACTCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGACT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
50529750 TATAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* *
50529766 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACA-AATTTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAA-TTACCATTTTACCCTCGAT
50529830 TTACAGAATTACTGTTT
65 TTACAGAATTACTGTTT
* * * *
50529847 TACCCTCTATTTATAGAATT---A---T----T-GTTTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* **
50529901 TACAAAATTACCATTT
66 TACAGAATTACTGTTT
* ** * *
50529917 TACCCTCGATTTACAAAATTATTATTTTACCCTCGATTCACAGAATTACCATTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
50529982 TACAAAATTACTGTTT
66 TACAGAATTACTGTTT
* * * *
50529998 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCT
50530058 TAGGGTGTTA
Statistics
Matches: 389, Mismatches: 50, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
70 55 0.14
71 3 0.01
73 1 0.00
75 1 0.00
76 1 0.00
78 1 0.00
80 4 0.01
81 322 0.83
82 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TACAGAATTACTGTTT
Found at i:50529872 original size:27 final size:27
Alignment explanation
Indices: 50529523--50529876 Score: 462
Period size: 27 Copynumber: 13.1 Consensus size: 27
50529513 ATTACCAAAG
* *
50529523 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50529550 TACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50529577 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50529604 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50529631 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50529658 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
50529685 TACTCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
50529712 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
50529739 TACCCTCGACTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
50529766 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
50529793 TACCCTCGATTTACA-AATTTACCGTTT
1 TACCCTCGATTTACAGAA-TTACTGTTT
50529820 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
50529847 TACCCTCTATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
50529874 TAC
1 TAC
50529877 AGAATTACTA
Statistics
Matches: 288, Mismatches: 33, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
26 4 0.01
27 280 0.97
28 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:50529881 original size:124 final size:124
Alignment explanation
Indices: 50529496--50530000 Score: 420
Period size: 135 Copynumber: 3.9 Consensus size: 124
50529486 ATTACTAAAA
* ** *** * *
50529496 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCGTTTTACCATCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* * * * * *
50529561 TACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTAT
66 CACAGAATTACCATTTTACCCTTGATTTACA-AA--A-----TTA--CT-GTTTTACAGAATTAC
50529626 TATTT
120 TATTT
* * * * * *
50529631 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACTCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* * * * ** *
50529696 TACAAAATTATCATTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGACTTATAGAATTA-
66 CACAGAATTACCATTTTACCCTTGATTTAC--AA--A--A--TTA--CT-GTTTTACAGAATTAC
*
50529760 TCGTTT
120 T-ATTT
* * * *
50529766 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAATTTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
* ** * * *
50529831 TACAGAATTACTGTTTTACCCTCT-ATTTATAGAATTATTGTTTTACAGAATTACTATTT
66 CACAGAATTACCATTTTACCCT-TGATTTACAAAATTACTGTTTTACAGAATTACTATTT
**
50529890 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
50529955 CACAGAATTACCATTTTACCCTTGATTTACAAAATTACTGTTTTAC
66 CACAGAATTACCATTTTACCCTTGATTTACAAAATTACTGTTTTAC
50530001 CCTTGATTTA
Statistics
Matches: 309, Mismatches: 53, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
123 1 0.00
124 111 0.36
125 2 0.01
127 3 0.01
129 1 0.00
131 1 0.00
133 1 0.00
134 1 0.00
135 182 0.59
136 1 0.00
137 1 0.00
138 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (124 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
CACAGAATTACCATTTTACCCTTGATTTACAAAATTACTGTTTTACAGAATTACTATTT
Found at i:50529887 original size:97 final size:97
Alignment explanation
Indices: 50529775--50530057 Score: 323
Period size: 97 Copynumber: 2.8 Consensus size: 97
50529765 TTACCCTCGA
* * *
50529775 TTTACAGAATTACTATTTTACCCTCGATTTACAAATTTACCGTTTTACCCTCGATTTACAGAATT
1 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATT
* * * *
50529840 ACTGTTTTACCCTCTATTTATAGAATTATTGT
66 ACTATTTTACCCTCGATTCACAGAATTATTGT
50529872 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATT
1 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATT
* *
50529937 ATTATTTTACCCTCGATTCACAGAATTACCATTTTACCCTTGA
66 ACTATTTTACCCTCGATTCACAG----A--A--TTA---TTGT
* * * * * *
50529980 TTTACAAAATTACTGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATT
1 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATT
*
50530045 ACCATTTTACCCT
66 ACTATTTTACCCT
50530058 TAGGGTGTTA
Statistics
Matches: 158, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
97 80 0.51
101 1 0.01
103 1 0.01
105 3 0.02
108 73 0.46
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.42
Consensus pattern (97 bp):
TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATT
ACTATTTTACCCTCGATTCACAGAATTATTGT
Found at i:50529902 original size:27 final size:27
Alignment explanation
Indices: 50529872--50530057 Score: 255
Period size: 27 Copynumber: 6.9 Consensus size: 27
50529862 GAATTATTGT
* *
50529872 TTTACAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCATTTTACCCTCGA
50529899 TTTACAAAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCATTTTACCCTCGA
**
50529926 TTTACAAAATTATTATTTTACCCTCGA
1 TTTACAAAATTACCATTTTACCCTCGA
* * *
50529953 TTCACAGAATTACCATTTTACCCTTGA
1 TTTACAAAATTACCATTTTACCCTCGA
** *
50529980 TTTACAAAATTACTGTTTTACCCTTGA
1 TTTACAAAATTACCATTTTACCCTCGA
* *
50530007 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCATTTTACCCTCGA
*
50530034 TTTATAAAATTACCATTTTACCCT
1 TTTACAAAATTACCATTTTACCCT
50530058 TAGGGTGTTA
Statistics
Matches: 140, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.41
Consensus pattern (27 bp):
TTTACAAAATTACCATTTTACCCTCGA
Found at i:50529910 original size:43 final size:43
Alignment explanation
Indices: 50529829--50529910 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
50529819 TTACCCTCGA
* * * *
50529829 TTTACAGAATTACTGTTTTACCCTCTATTTATAGAATTATTGT
1 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATTGT
50529872 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA
1 TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA
50529911 CCATTTTACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (43 bp):
TTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATTGT
Found at i:50530597 original size:6 final size:6
Alignment explanation
Indices: 50530554--50530619 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
50530544 TTGTCACCTA
* * *
50530554 ATTCTA ATTCTG ATTTTG ATTCTG ATTCT- ATCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
50530603 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
50530620 AGTTTTGATA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 2 0.04
8 2 0.04
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:50530617 original size:37 final size:37
Alignment explanation
Indices: 50530498--50530620 Score: 114
Period size: 37 Copynumber: 3.5 Consensus size: 37
50530488 TTGCATTCAC
* * * *
50530498 ATTCCAATTTTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTAATTTTGATTCTATCACCTGATTCTGATTCTG
* *
50530535 ATTCTAATTTTG------TCACCTAATTCTAATTCTG
1 ATTCTAATTTTGATTCTATCACCTGATTCTGATTCTG
* * *
50530566 ATTTTGATTCTGATTCTATCACCTGATTCTGATTCTG
1 ATTCTAATTTTGATTCTATCACCTGATTCTGATTCTG
*
50530603 ATTCTCATTTTGATTCTA
1 ATTCTAATTTTGATTCTA
50530621 GTTTTGATAA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
31 24 0.36
37 43 0.64
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.49
Consensus pattern (37 bp):
ATTCTAATTTTGATTCTATCACCTGATTCTGATTCTG
Found at i:50538052 original size:28 final size:28
Alignment explanation
Indices: 50538020--50538089 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
50538010 ATAGTAAGTC
50538020 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
50538048 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
50538076 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50538090 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:50551498 original size:47 final size:47
Alignment explanation
Indices: 50551349--50551524 Score: 135
Period size: 47 Copynumber: 3.7 Consensus size: 47
50551339 ATTACGAGAA
* * * * *
50551349 CCAATGTAAGACTATGTCTAGGACATGGCATCGGAATTGAGACGA-GTG
1 CCAATGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA-TATGAG
* * * **
50551397 CTAGTGTAAGA-CATGTCTGGGACAT-GCGTCGACTACAAGATGAT-AG
1 CCAATGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGAT-ATGAG
** * *
50551443 TTAGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATGAG
1 CCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAG
** *
50551490 CCAATGTAAGACCATGTCTGAAACATAGCATCGAC
1 CCAATGTAAGACCATGTCTGGGACATGGCATCGAC
50551525 ACCTTACCCA
Statistics
Matches: 101, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
45 3 0.03
46 21 0.21
47 60 0.59
48 17 0.17
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (47 bp):
CCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGAG
Found at i:50559204 original size:94 final size:90
Alignment explanation
Indices: 50559014--50559235 Score: 252
Period size: 94 Copynumber: 2.4 Consensus size: 90
50559004 GGTAAGGTGC
*
50559014 CGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCGCAACCAATGCATGTCCCAACA
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCGCAACCAATGCATGTCCCAACA
* * *
50559077 TGTCTTACACTGGCTTACGTCTCGAGG
64 TGTCTTACACTGGCTCACATATCGAGG
* * * *
50559104 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTTG-ATGCCGATGTCATGTCCCAGA
1 C-GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCGCA-ACCAATG-CATGTCCCA-A
* *
50559168 CATGGTCTTACACTGGCTCACATATTGTAGT
62 CAT-GTCTTACACTGGCTCACATATCG-AGG
*
50559199 CGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACA
50559236 CAAGTGACCC
Statistics
Matches: 112, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
89 8 0.07
90 18 0.16
91 17 0.15
92 9 0.08
93 4 0.04
94 53 0.47
95 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (90 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCGCAACCAATGCATGTCCCAACATG
TCTTACACTGGCTCACATATCGAGG
Found at i:50559233 original size:46 final size:45
Alignment explanation
Indices: 50559012--50559235 Score: 220
Period size: 46 Copynumber: 4.9 Consensus size: 45
50559002 TGGGTAAGGT
* * *
50559012 GCCGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTCGCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTTG-A
* * * * * *
50559058 ACCAATGCATGTCCCA-ACATGTCTTACACTGGCTTACGTCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTTGA
* * *
50559102 GGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTTGA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTTGA
* *
50559148 TGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATATTGTA
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATCTTG-A
*
50559197 GTCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
50559236 CAAGTGACCC
Statistics
Matches: 148, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
43 8 0.05
44 7 0.05
45 29 0.20
46 50 0.34
47 28 0.19
48 25 0.17
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACATCTTGA
Found at i:50559596 original size:30 final size:30
Alignment explanation
Indices: 50559555--50559611 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
50559545 AAATTTACAC
*
50559555 CTTTGGTAAAATGACCATTTTACCCCTAAG
1 CTTTGGCAAAATGACCATTTTACCCCTAAG
*
50559585 CTTTGGCAAAATGACCATTTTGCCCCT
1 CTTTGGCAAAATGACCATTTTACCCCT
50559612 CTGCTCGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAAG
Found at i:50561609 original size:27 final size:28
Alignment explanation
Indices: 50561525--50561622 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
50561515 CATGAGATTG
* * * *
50561525 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
50561554 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50561582 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50561609 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50561623 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50561633 original size:27 final size:27
Alignment explanation
Indices: 50561553--50561635 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
50561543 TAAATTGTAC
* *
50561553 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50561581 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
50561608 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
50561635 A
1 A
50561636 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:50561636 original size:29 final size:27
Alignment explanation
Indices: 50561525--50561636 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
50561515 CATGAGATTG
** * *
50561525 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
50561554 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
50561582 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
50561609 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
50561637 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:50568276 original size:11 final size:11
Alignment explanation
Indices: 50568260--50568284 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50568250 ATGCTATGGG
50568260 TGGAAACATGT
1 TGGAAACATGT
50568271 TGGAAACATGT
1 TGGAAACATGT
50568282 TGG
1 TGG
50568285 CTTAGTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (11 bp):
TGGAAACATGT
Found at i:50569553 original size:27 final size:28
Alignment explanation
Indices: 50569469--50569566 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
50569459 CATGAGATTG
* * * *
50569469 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
50569498 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50569526 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50569553 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50569567 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50569577 original size:27 final size:27
Alignment explanation
Indices: 50569497--50569579 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
50569487 TAAATTGTAC
* *
50569497 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50569525 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
50569552 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
50569579 A
1 A
50569580 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:50569580 original size:29 final size:27
Alignment explanation
Indices: 50569469--50569580 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
50569459 CATGAGATTG
** * *
50569469 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
50569498 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
50569526 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
50569553 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
50569581 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:50571279 original size:15 final size:16
Alignment explanation
Indices: 50571261--50571300 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
50571251 AATTGGAAAG
50571261 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
50571276 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
50571292 ATGTAAAAG
1 ATG-AAAAG
50571301 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:50574421 original size:16 final size:16
Alignment explanation
Indices: 50574400--50574430 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50574390 GGGTGGCGTG
*
50574400 TGCGGCATACGCCGTA
1 TGCGGCACACGCCGTA
50574416 TGCGGCACACGCCGT
1 TGCGGCACACGCCGT
50574431 GTGACAGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (16 bp):
TGCGGCACACGCCGTA
Found at i:50575452 original size:22 final size:21
Alignment explanation
Indices: 50575426--50575488 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
50575416 TCGAAATACT
50575426 AACAGAGGCACCGTAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
50575447 ATACAGAGGCACC-TAAGTG-AA
1 A-ACAGAGGCACCGT-AGTGCAA
** *
50575468 AATTGAGGCACCGAAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
50575489 TCTCATACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 13 0.37
21 7 0.20
22 15 0.43
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.13
Consensus pattern (21 bp):
AACAGAGGCACCGTAGTGCAA
Found at i:50577097 original size:7 final size:7
Alignment explanation
Indices: 50577085--50577122 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
50577075 ATCAATACTT
50577085 AATCCTC
1 AATCCTC
50577092 AATCCTC
1 AATCCTC
50577099 AATCCTC
1 AATCCTC
*
50577106 AATCATC
1 AATCCTC
*
50577113 AATTCTC
1 AATCCTC
50577120 AAT
1 AAT
50577123 TCGTAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (7 bp):
AATCCTC
Found at i:50577100 original size:21 final size:21
Alignment explanation
Indices: 50577076--50577122 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50577066 TCTTTTTAAA
* *
50577076 TCAATACTTAATCCTCAATCC
1 TCAATACTCAATCATCAATCC
* *
50577097 TCAATCCTCAATCATCAATTC
1 TCAATACTCAATCATCAATCC
50577118 TCAAT
1 TCAAT
50577123 TCGTAATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (21 bp):
TCAATACTCAATCATCAATCC
Found at i:50581102 original size:14 final size:14
Alignment explanation
Indices: 50581057--50581119 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
50581047 ATTCACTTAA
*
50581057 TAATAATAT-TATT
1 TAATAATATAAATT
*
50581070 TAA-AAAATAACATT
1 TAATAATATAA-ATT
50581084 GTAATAATATAAATT
1 -TAATAATATAAATT
* *
50581099 TAATAAAATAATTT
1 TAATAATATAAATT
50581113 TAATAAT
1 TAATAAT
50581120 GTTTACGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
12 4 0.10
13 3 0.08
14 21 0.52
15 6 0.15
16 6 0.15
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (14 bp):
TAATAATATAAATT
Found at i:50582055 original size:16 final size:18
Alignment explanation
Indices: 50582036--50582068 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50582026 AAATTTTTAT
50582036 TGCT-AATTTTT-TTAAG
1 TGCTGAATTTTTATTAAG
50582052 TGCTGAATTTTTATTAA
1 TGCTGAATTTTTATTAA
50582069 AAAATTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (18 bp):
TGCTGAATTTTTATTAAG
Found at i:50597437 original size:40 final size:40
Alignment explanation
Indices: 50597354--50597534 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
50597344 AATCAAGCAT
** ** * *
50597354 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
50597392 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
50597432 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
50597472 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCAGAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
50597513 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
50597535 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 61 0.52
41 26 0.22
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:50597525 original size:81 final size:79
Alignment explanation
Indices: 50597363--50597534 Score: 202
Period size: 81 Copynumber: 2.2 Consensus size: 79
50597353 TCTTCGGGGT
* * * *
50597363 TTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATA
1 TTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTCACTAGCAGA
* *
50597427 AATGCCTTCGGGAC
66 AAAGCCTTCAGGAC
** * ** * *
50597441 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCA
1 TTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAACCCGGATATAGTCAC-TAGCA
50597506 GAAAAGCCTTCAGGAC
64 GAAAAGCCTTCAGGAC
50597522 TTAGCCCGGATAT
1 TTAGCCCGGATAT
50597535 CATTCGAGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 4 0.05
79 17 0.22
80 26 0.33
81 31 0.40
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTCACTAGCAGA
AAAGCCTTCAGGAC
Found at i:50600913 original size:32 final size:32
Alignment explanation
Indices: 50600877--50600939 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
50600867 GACACCCTTA
50600877 GTAAACAAGGATCAGTAAAATGCATATTTACG
1 GTAAACAAGGATCAGTAAAATGCATATTTACG
50600909 GTAAACAAGGATCAGTAAAATGCATATTTAC
1 GTAAACAAGGATCAGTAAAATGCATATTTAC
50600940 TAAGTAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.25
Consensus pattern (32 bp):
GTAAACAAGGATCAGTAAAATGCATATTTACG
Found at i:50624411 original size:15 final size:15
Alignment explanation
Indices: 50624385--50624431 Score: 76
Period size: 15 Copynumber: 3.1 Consensus size: 15
50624375 TTTAAACTTG
50624385 AACCTATGGATGTAT
1 AACCTATGGATGTAT
* *
50624400 AACTTGTGGATGTAT
1 AACCTATGGATGTAT
50624415 AACCTATGGATGTAT
1 AACCTATGGATGTAT
50624430 AA
1 AA
50624432 GCTAGGATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (15 bp):
AACCTATGGATGTAT
Found at i:50626608 original size:14 final size:14
Alignment explanation
Indices: 50626589--50626616 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50626579 CGAAGCCATA
50626589 GTGTGTAAAATATT
1 GTGTGTAAAATATT
50626603 GTGTGTAAAATATT
1 GTGTGTAAAATATT
50626617 TGAAGATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (14 bp):
GTGTGTAAAATATT
Found at i:50638208 original size:46 final size:45
Alignment explanation
Indices: 50638128--50638301 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
50638118 TGTAACCCGC
*
50638128 CCATAAGTGAACTCGGA-GCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
50638173 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * * *
50638219 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
50638266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
50638302 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
45 18 0.17
46 51 0.49
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:50638249 original size:93 final size:92
Alignment explanation
Indices: 50638136--50638306 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 92
50638126 GCCCATAAGT
* * * *
50638136 GAACTCGGAGCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGAGCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
50638201 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
* *
50638228 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGA-GCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50638293 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
50638307 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 9 0.13
93 62 0.87
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGAGCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:50638321 original size:46 final size:44
Alignment explanation
Indices: 50638178--50638321 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
50638168 CGTATCCATA
* *
50638178 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
50638227 --CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCCCAAATCC-T
50638270 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
50638317 AGTGA
1 AGTGA
50638322 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 1 0.01
46 31 0.41
47 26 0.35
48 5 0.07
49 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:50640717 original size:30 final size:30
Alignment explanation
Indices: 50640674--50640791 Score: 159
Period size: 30 Copynumber: 4.0 Consensus size: 30
50640664 AAAGATAACA
*
50640674 AGAAAACC-GAATAAAGAAATCCAAGATAG
1 AGAAACCCAGAATAAAGAAATCCAAGATAG
50640703 AGAAACCCAGAATAAAGAAATCCAAGATAG
1 AGAAACCCAGAATAAAGAAATCCAAGATAG
*
50640733 AGAAACCCAGAATAAAGAAATCC-AGAATAA
1 AGAAACCCAGAATAAAGAAATCCAAG-ATAG
* * * *
50640763 AGAGATCCAGGATAAAGAAACCCAAGATA
1 AGAAACCCAGAATAAAGAAATCCAAGATA
50640792 TGATACTATG
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
29 9 0.11
30 69 0.86
31 2 0.03
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:50640721 original size:15 final size:15
Alignment explanation
Indices: 50640673--50640782 Score: 118
Period size: 15 Copynumber: 7.4 Consensus size: 15
50640663 CAAAGATAAC
*
50640673 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
50640687 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
50640702 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
50640717 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
50640732 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
50640747 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
50640762 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
50640777 AAGAAA
1 AAGAAA
50640783 CCCAAGATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
14 10 0.13
15 67 0.85
16 2 0.03
ACGTcount: A:0.58, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:50643793 original size:46 final size:46
Alignment explanation
Indices: 50643724--50643901 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
50643714 TGTAACCCGC
* * *
50643724 CCATAAGTGAACTTGGACGCAACTCAACGAGCTCGGGTGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* **
50643770 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTC-ACAT
* *** * * ** *
50643816 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* *
50643863 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
50643902 CCCAAATATC
Statistics
Matches: 103, Mismatches: 26, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
45 1 0.01
46 69 0.67
47 32 0.31
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
Found at i:50645563 original size:71 final size:70
Alignment explanation
Indices: 50645375--50645810 Score: 303
Period size: 71 Copynumber: 6.2 Consensus size: 70
50645365 CCTCCCCTCA
* * * * * *
50645375 AAAAATAGTTAGAAAGAGCTAAGACTCCTCCTAGTTATGATCTTAGAGCTCACAAGTTTAATACC
1 AAAAATAGTTA-AGAGAGCTAAG---GCTCCTAGCTATGATCTTAGGGCTCACAGGTTCAATACC
*
50645440 GCAG--CCC
62 ACAGCCCCC
* * * ** * *
50645447 AACAATAGTT-AGAGAGCTAAGGTTCCCAAATACGATCTTAGGGCTCACAGGTTTAATACCACAG
1 AAAAATAGTTAAGAGAGCTAAGGCTCCTAGCTATGATCTTAGGGCTCACAGGTTCAATACCACAG
50645511 CCCCC
66 CCCCC
* * *
50645516 AAAAATAGTTAACGAGAGCTAAAGCT-CTCAGCTATGATCTT-GAGGCTCACAGATTCAATATTG
1 AAAAATAGTTAA-GAGAGCTAAGGCTCCT-AGCTATGATCTTAG-GGCTCACAGGTTCAATA--C
* * ***
50645579 TA-AACCTTA
61 CACAGCCCCC
* * * * *
50645588 AAAAATAGTTAGAAAGAGCTAAGGCTCCAAGCTGTGATCTTAGGGCTCACAAGTTCAATACTACA
1 AAAAATAGTTA-AGAGAGCTAAGGCTCCTAGCTATGATCTTAGGGCTCACAGGTTCAATACCACA
* *
50645653 ACCCCT
65 GCCCCC
* * * * *
50645659 AAAAATAGTTAGCGAGAGCTAAGGCTCCTAGCTGTGATCTTATGGCT-AGCAGGTACAATACCAT
1 AAAAATAGTTA-AGAGAGCTAAGGCTCCTAGCTATGATCTTAGGGCTCA-CAGGTTCAATACCAC
50645723 AGCCCCC
64 AGCCCCC
* * * * * * * * * *
50645730 CAAAATAGTTAGTGAAAGTTAAGGCTCCTAGTTGTGATCTAAAGGCTCGCAGGTTCAACACCACA
1 AAAAATAGTTA-AGAGAGCTAAGGCTCCTAGCTATGATCTTAGGGCTCACAGGTTCAATACCACA
50645795 GCCCCC
65 GCCCCC
50645801 -AAAATAGTTA
1 AAAAATAGTTA
50645811 GTGCAAGCTG
Statistics
Matches: 293, Mismatches: 57, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
67 34 0.12
69 12 0.04
70 26 0.09
71 157 0.54
72 60 0.20
73 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (70 bp):
AAAAATAGTTAAGAGAGCTAAGGCTCCTAGCTATGATCTTAGGGCTCACAGGTTCAATACCACAG
CCCCC
Found at i:50645920 original size:70 final size:70
Alignment explanation
Indices: 50645726--50645920 Score: 207
Period size: 70 Copynumber: 2.8 Consensus size: 70
50645716 ATACCATAGC
* * * * *
50645726 CCCCCAAAATAGTTAGTGAAAGTT-AAGGCTCCTAGTTGT-GATCTAAAGGCTCGCAGGTTCAAC
1 CCCCCAAAATAGTTAGTGCAAGTTGAA-GCTCCTAGTTGTAGCT-TTAAGGCTCGTAGGTTCAAA
50645789 ACCACAG
64 ACCACAG
* ** * * *
50645796 CCCCCAAAATAGTTAGTGCAAGCTGAAGCTCCTAACTATAGCTTTAAGGATCGTAGGTTTAAAAC
1 CCCCCAAAATAGTTAGTGCAAGTTGAAGCTCCTAGTTGTAGCTTTAAGGCTCGTAGGTTCAAAAC
50645861 CACAG
66 CACAG
*** *
50645866 CCTTTAAAATAGTTAGTGCAAGTTGAAGCTGCC-AGTTGTAGCTTTAAGTCTCGTA
1 CCCCCAAAATAGTTAGTGCAAGTTGAAGCT-CCTAGTTGTAGCTTTAAGGCTCGTA
50645921 AATTCAACAT
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
70 96 0.94
71 6 0.06
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (70 bp):
CCCCCAAAATAGTTAGTGCAAGTTGAAGCTCCTAGTTGTAGCTTTAAGGCTCGTAGGTTCAAAAC
CACAG
Found at i:50653336 original size:15 final size:15
Alignment explanation
Indices: 50653299--50653351 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50653289 TAACAAATTG
*
50653299 AAATATTAAGTGATGA
1 AAATATTAAGTG-TTA
*
50653315 AAA-ATTAAATGTTA
1 AAATATTAAGTGTTA
*
50653329 AAATATTAAGTATTA
1 AAATATTAAGTGTTA
50653344 AAAT-TTAA
1 AAATATTAA
50653352 TTATTGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 9 0.28
15 20 0.62
16 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (15 bp):
AAATATTAAGTGTTA
Found at i:50661669 original size:27 final size:27
Alignment explanation
Indices: 50661638--50661815 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
50661628 TAAATTGTAC
*
50661638 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
50661665 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
50661691 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
50661719 GGCACTAAGTGTGCGAGATGGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
50661747 GGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
50661774 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
50661801 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50661816 GGCTCAATAA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:50661754 original size:82 final size:81
Alignment explanation
Indices: 50661639--50661794 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
50661629 AAATTGTACA
* * * *
50661639 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50661703 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50661720 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50661785 TGCGAGTTGA
65 TGCGAATTGA
50661795 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50661806 original size:82 final size:81
Alignment explanation
Indices: 50661635--50661815 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
50661625 GATTAAATTG
* * * *
50661635 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50661700 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50661716 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50661780 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50661798 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50661816 GGCTCAATAA
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50665526 original size:46 final size:45
Alignment explanation
Indices: 50665372--50665589 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 45
50665362 AGATATGTGC
* * * *
50665372 GCCAGTGTTAGACATGTCTGGGACATGCATCAGTC-ACATA-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACA-AGAT--GT
** * *
50665418 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGA-GT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCT-ACAAGATGT
* *
50665466 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCT-CAAGATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAGATG-T
* * * * *
50665511 AGCCATTGTCAGACATGTTTGGGACATGCGTCGG-CTACGAGATGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAGATGT
*
50665556 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC
50665590 ACGGTTACAT
Statistics
Matches: 136, Mismatches: 25, Indels: 23
0.74 0.14 0.12
Matches are distributed among these distances:
43 3 0.02
44 29 0.21
45 5 0.04
46 51 0.38
47 27 0.20
48 18 0.13
51 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAAGATGT
Found at i:50665580 original size:90 final size:93
Alignment explanation
Indices: 50665375--50665589 Score: 251
Period size: 94 Copynumber: 2.3 Consensus size: 93
50665365 TATGTGCGCC
* * *
50665375 AGTGTTAGACATGTCTGGGACATGCATCAGTCACATAATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTGG
*
50665440 GACATGGCATCGGTATTGAGACGAGTGCT
66 GACATGGCATCGGTATCGAGAC-AGTGCT
* * ** * * *
50665469 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCA-AGATGTTAGCCATTGTCAGA-CATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATA-ATGAGAGCCAGTGTAAGACCATGTCTG
* *
50665532 GGACAT-GCGTCGGCTA-CGAGA-TGTGCT
65 GGACATGGCATCGG-TATCGAGACAGTGCT
50665559 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
50665590 ACGGTTACAT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
90 35 0.33
92 10 0.10
93 16 0.15
94 44 0.42
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGTATCGAGACAGTGCT
Found at i:50672884 original size:48 final size:47
Alignment explanation
Indices: 50672765--50672909 Score: 157
Period size: 48 Copynumber: 3.0 Consensus size: 47
50672755 CCAAGACATT
*
50672765 GGGTTGATATGTGTGCTACTGTAAGACCATGTCTGGGACATGGCATC
1 GGGTTGATATGTGTGCTACTGTAAGACAATGTCTGGGACATGGCATC
**** * * * *
50672812 GGCCACATTATGAGAGCCACTGTAAGACAATGTTTGGGACATGGCATC
1 GGGTTGA-TATGTGTGCTACTGTAAGACAATGTCTGGGACATGGCATC
* *
50672860 GGTGTTGATATGTGTGCTAGTGTAAGATTAA-GTCTGGGACATGGCATC
1 GG-GTTGATATGTGTGCTACTGTAAGA-CAATGTCTGGGACATGGCATC
50672908 GG
1 GG
50672910 CCATGTGACA
Statistics
Matches: 76, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
47 3 0.04
48 70 0.92
49 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (47 bp):
GGGTTGATATGTGTGCTACTGTAAGACAATGTCTGGGACATGGCATC
Found at i:50675036 original size:41 final size:41
Alignment explanation
Indices: 50674991--50675121 Score: 131
Period size: 41 Copynumber: 3.1 Consensus size: 41
50674981 GCTTTAAGCT
50674991 GGTGAATATTATCGGGCTTCGAGCCTAGCAGGCGTAATGCC
1 GGTGAATATTATCGGGCTTCGAGCCTAGCAGGCGTAATGCC
* * ** * * * *
50675032 GGTGAA-ATGATATTGGACTTAAAGGTCTAGCAAGCTTTAA-GCT
1 GGTGAATAT--TATCGGGCTTCGA-GCCTAGCAGGC-GTAATGCC
*
50675075 GGTGAATATTATCGGGCTCCGAGCCTAGCAGGCGTAATGCC
1 GGTGAATATTATCGGGCTTCGAGCCTAGCAGGCGTAATGCC
50675116 GGTGAA
1 GGTGAA
50675122 ATGATATCGG
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
40 5 0.07
41 23 0.34
42 17 0.25
43 17 0.25
44 5 0.07
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (41 bp):
GGTGAATATTATCGGGCTTCGAGCCTAGCAGGCGTAATGCC
Found at i:50675145 original size:84 final size:84
Alignment explanation
Indices: 50674927--50675152 Score: 389
Period size: 84 Copynumber: 2.7 Consensus size: 84
50674917 TTGGGGATTT
* * * *
50674927 GAGCCTAGCAGGTGTAATGCCGTTGAAATGATATCGAACTTAAAGGTCTACCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
*
50674992 GTGAATATTATCGGGCTTC
66 GTGAATATTATCGGGCTCC
*
50675011 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATTGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
50675076 GTGAATATTATCGGGCTCC
66 GTGAATATTATCGGGCTCC
*
50675095 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAGGCTT
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTT
50675153 ATTGCCAGTG
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 134 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (84 bp):
GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
GTGAATATTATCGGGCTCC
Found at i:50677987 original size:40 final size:40
Alignment explanation
Indices: 50677932--50678074 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
50677922 GATGATAACT
*
50677932 GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGAGTAATTCC
1 GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
50677972 GGGCTAAGCCCCGAAGGCATTTGTGCTATTGACTAATTCC
1 GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
50678012 GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
*
50678052 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGCCCCGAAGGCATTTG
50678075 AGCGAGTAGC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 94 0.98
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:50678107 original size:39 final size:40
Alignment explanation
Indices: 50677932--50678107 Score: 146
Period size: 40 Copynumber: 4.4 Consensus size: 40
50677922 GATGATAACT
** * * * *
50677932 GGGCTAAGCCCCGAAGGCATTTGTGCTAGTGAGTA-ATTCC
1 GGGCTAAATCCCGAAGGCATTTGAGCGAGTTACTATA-TCC
** * *
50677972 GGGCTAAGCCCCGAAGGCATTTGTGCTA-TTGACTA-ATTCC
1 GGGCTAAATCCCGAAGGCATTTGAGCGAGTT-ACTATA-TCC
** *
50678012 GGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAATCCCGAAGGCATTTGAGCGAGTTACTATATCC
*
50678052 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAATCCCGAAGGCATTTGAGCGAGTTA-CTATATCC
*
50678092 -GGCTAAATCCTGAAGG
1 GGGCTAAATCCCGAAGG
50678108 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 17 0.14
40 105 0.84
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GGGCTAAATCCCGAAGGCATTTGAGCGAGTTACTATATCC
Found at i:50682482 original size:14 final size:15
Alignment explanation
Indices: 50682463--50682492 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50682453 GTTTATTATA
50682463 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
50682477 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
50682492 T
1 T
50682493 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:50684477 original size:41 final size:39
Alignment explanation
Indices: 50684431--50684563 Score: 115
Period size: 41 Copynumber: 3.2 Consensus size: 39
50684421 AGACTTAAAG
50684431 GTCTAGCAAGCTTTAAGCTGGTGAATATTATCAGGCTCCGA
1 GTCTAGCAAGCTTTAAGCTGGTGAA-ATTATC-GGCTCCGA
* * * ***
50684472 GTCTAGC-AGGTGTAATGCCGGTGAAATGATATCGGACTTAAA
1 GTCTAGCAAGCTTTAA-GCTGGTGAAAT--TATCGG-CTCCGA
50684514 GGTCTAGCAAGCTTTAAGCTGGTGAACATTATCGGGCTCCGA
1 -GTCTAGCAAGCTTTAAGCTGGTGAA-ATTATC-GGCTCCGA
*
50684556 GCCTAGCA
1 GTCTAGCA
50684564 GGCGTAATGC
Statistics
Matches: 71, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
40 8 0.11
41 24 0.34
42 14 0.20
43 17 0.24
44 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
GTCTAGCAAGCTTTAAGCTGGTGAAATTATCGGCTCCGA
Found at i:50684490 original size:84 final size:84
Alignment explanation
Indices: 50684386--50684611 Score: 380
Period size: 84 Copynumber: 2.7 Consensus size: 84
50684376 TTGGGGATTT
* * *
50684386 GAGCCTAGCAGGCGTAATGCCGTTGAAATGACATCAGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
*
50684451 GTGAATATTATCAGGCTCC
66 GTGAACATTATCAGGCTCC
* *
50684470 GAGTCTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
*
50684535 GTGAACATTATCGGGCTCC
66 GTGAACATTATCAGGCTCC
*
50684554 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAGGCTT
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTT
50684612 ATTGCCAGTG
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 132 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (84 bp):
GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTG
GTGAACATTATCAGGCTCC
Found at i:50684520 original size:43 final size:43
Alignment explanation
Indices: 50684390--50684608 Score: 159
Period size: 42 Copynumber: 5.2 Consensus size: 43
50684380 GGATTTGAGC
* * * *
50684390 CTAGCAGGCGTAATGCCGTTGAAATGACATCAGACTTAAAGGT
1 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * ***
50684433 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCAGG-CTCCGA-GT
1 CTAGC-AGGTGTAATGCCGGTGAAATGA-TATC-GGACTTAAAGGT
50684474 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * * *** *
50684517 CTAGCAAGCTTTAA-GCTGGTGAACAT--TATCGGGCTCCGA-GC
1 CTAGC-AGGTGTAATGCCGGTGAA-ATGATATCGGACTTAAAGGT
*
50684558 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
50684601 CTAGCAGG
1 CTAGCAGG
50684609 CTTATTGCCA
Statistics
Matches: 129, Mismatches: 33, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
40 13 0.10
41 30 0.23
42 37 0.29
43 36 0.28
44 13 0.10
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:50684579 original size:41 final size:40
Alignment explanation
Indices: 50684450--50684582 Score: 115
Period size: 41 Copynumber: 3.2 Consensus size: 40
50684440 GCTTTAAGCT
* *
50684450 GGTGAATATTATCAGGCTCCGAGTCTAGCAGGTGTAATGCC
1 GGTGAA-ATTATCGGGCTCCGAGTCTAGCAGGCGTAATGCC
* *** * * *
50684491 GGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAA-GCT
1 GGTGAAAT--TATCGGGCTCCGA-GTCTAGCAGGC-GTAATGCC
*
50684534 GGTGAACATTATCGGGCTCCGAGCCTAGCAGGCGTAATGCC
1 GGTGAA-ATTATCGGGCTCCGAGTCTAGCAGGCGTAATGCC
50684575 GGTGAAAT
1 GGTGAAAT
50684583 GATATCGGAC
Statistics
Matches: 69, Mismatches: 17, Indels: 13
0.70 0.17 0.13
Matches are distributed among these distances:
40 7 0.10
41 23 0.33
42 17 0.25
43 17 0.25
44 5 0.07
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
GGTGAAATTATCGGGCTCCGAGTCTAGCAGGCGTAATGCC
Found at i:50684609 original size:43 final size:43
Alignment explanation
Indices: 50684390--50684609 Score: 170
Period size: 43 Copynumber: 5.2 Consensus size: 43
50684380 GGATTTGAGC
* * *
50684390 CTAGCAGGCGTAATGCCGTTGAAATGACATCAGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * ***
50684433 CTAGCAAGCTTTAA-GCTGGTG-AAT-ATTATCAGG-CTCCGA-GT
1 CTAGCAGGC-GTAATGCCGGTGAAATGA-TATC-GGACTTAAAGGT
*
50684474 CTAGCAGGTGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
* * * * *** *
50684517 CTAGCAAGCTTTAA-GCTGGTGAACAT--TATCGGGCTCCGA-GC
1 CTAGCAGGC-GTAATGCCGGTGAA-ATGATATCGGACTTAAAGGT
50684558 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
1 CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
50684601 CTAGCAGGC
1 CTAGCAGGC
50684610 TTATTGCCAG
Statistics
Matches: 130, Mismatches: 33, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
40 8 0.06
41 35 0.27
42 37 0.28
43 42 0.32
44 8 0.06
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (43 bp):
CTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGT
Found at i:50685763 original size:37 final size:37
Alignment explanation
Indices: 50685722--50685797 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
50685712 AATGAGTTGC
50685722 TAATTGTTTTCTTATGAACTTACTAAGCTTTGAAGCT
1 TAATTGTTTTCTTATGAACTTACTAAGCTTTGAAGCT
50685759 TAATTGTTTTCTTATGAACTTACTAAGCTTTGAAGCT
1 TAATTGTTTTCTTATGAACTTACTAAGCTTTGAAGCT
50685796 TA
1 TA
50685798 CTCCCCGTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (37 bp):
TAATTGTTTTCTTATGAACTTACTAAGCTTTGAAGCT
Found at i:50686593 original size:48 final size:48
Alignment explanation
Indices: 50686476--50686762 Score: 260
Period size: 48 Copynumber: 6.0 Consensus size: 48
50686466 GGTGTTACGG
*
50686476 GCCACATTATGAGAGCCAGTGTAGGACCATGTCTGGGACATGGCATCA
1 GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
**** * * * * *
50686524 GTGTTAATAT-ATGTGCTAGTGTAAGACCACGTCTAGGACATGGCATCA
1 GCCACATTATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
* *
50686572 GCCACATTATGAGAGCCAGTGTAAGACCATGTTTGAGACATGGCATCA
1 GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
* * * * * *
50686620 GCCTCAATATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGAATC-
1 GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
* * * * * *
50686667 G--GCATTGTTATGTGTCAGTGTAAGACCATGTCTGGGACATGCCATCA
1 GCCACATTATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
* *
50686714 G-CACCGATGCATGAGAGCCAGTGTAAGACCATGTCCGGGACATGGCATC
1 GCCA-C-AT-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
50686763 GGCATTTTAC
Statistics
Matches: 185, Mismatches: 46, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
45 4 0.02
46 29 0.16
47 3 0.02
48 112 0.61
49 2 0.01
50 33 0.18
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
Found at i:50686641 original size:96 final size:95
Alignment explanation
Indices: 50686476--50686763 Score: 289
Period size: 96 Copynumber: 3.0 Consensus size: 95
50686466 GGTGTTACGG
* ** * *
50686476 GCCACATTATGAGAGCCAGTGTAGGACCATGTCTGGGACATGGCATCAGTGTTAATAT-ATGTGC
1 GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGA-GAGC
* *
50686540 TAGTGTAAGACCACGTCTAGGACATGGCATC
65 CAGTGTAAGACCATGTCTAGGACATGGCATC
* * *
50686571 AGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGAGACATGGCATCAGCCTCAATATGCGAGC
1 -GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGAGAGC
* *
50686636 CAGTGTAAGACCATGT-TTGGAACATGGAATC
65 CAGTGTAAGACCATGTCTAGG-ACATGGCATC
* * * * * * *
50686667 G--GCATTGTTATGTGTCAGTGTAAGACCATGTCTGGGACATGCCATCAGCAC-CGATGCATGAG
1 GCCACATTATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAAT--ATGAG
**
50686729 AGCCAGTGTAAGACCATGTCCGGGACATGGCATC
62 AGCCAGTGTAAGACCATGTCTAGGACATGGCATC
50686763 G
1 G
50686764 GCATTTTACA
Statistics
Matches: 160, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
93 6 0.04
94 36 0.22
95 5 0.03
96 111 0.69
97 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (95 bp):
GCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATATGAGAGCC
AGTGTAAGACCATGTCTAGGACATGGCATC
Found at i:50686756 original size:144 final size:144
Alignment explanation
Indices: 50686483--50686762 Score: 352
Period size: 144 Copynumber: 1.9 Consensus size: 144
50686473 CGGGCCACAT
* * * **
50686483 TATGAGAGCCAGTGTAGGACCATGTCTGGGACATGGCATCAGTGTTAATATATGTGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGAATCAGCATTAATATATGTGCTAGTGTAA
* * **
50686548 GACCACGTCTAGGACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTTTGAGACAT
66 GACCACGTCTAGGACATGCCATCAGCCACATCATGAGAGCCAGTGTAAGACCATGTCCGAGACAT
50686613 GGCATCAGCCTCAA
131 GGCATCAGCCTCAA
* * * *
50686627 TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGGCATT-GT-TATGTG-TCAGTGTA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGAATCAGCATTAATATATGTGCT-AGTGTA
* * *
50686689 AGACCATGTCTGGGACATGCCATCAG-CACCGATGCATGAGAGCCAGTGTAAGACCATGTCCGGG
65 AGACCACGTCTAGGACATGCCATCAGCCA-C-AT-CATGAGAGCCAGTGTAAGACCATGTCCGAG
50686753 ACATGGCATC
127 ACATGGCATC
50686763 GGCATTTTAC
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
141 3 0.03
142 36 0.31
143 3 0.03
144 74 0.64
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (144 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGAACATGGAATCAGCATTAATATATGTGCTAGTGTAA
GACCACGTCTAGGACATGCCATCAGCCACATCATGAGAGCCAGTGTAAGACCATGTCCGAGACAT
GGCATCAGCCTCAA
Found at i:50696644 original size:43 final size:42
Alignment explanation
Indices: 50696578--50696672 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 42
50696568 AGCTCATACA
* * *
50696578 ATGCCAATGTCCCAGACGTGGTCTTATATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATAT-G
*
50696621 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATG
*
50696663 ATGCCGATGT
1 ATGCCAATGT
50696673 ACACTTAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 9 0.20
43 35 0.78
44 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATG
Found at i:50698066 original size:27 final size:27
Alignment explanation
Indices: 50698004--50698067 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
50697994 ATAGATTGTA
*
50698004 ACAAAGGCTTCCTTTTCAAAGATCGCC
1 ACAAAGGCTTCCTTTTCAAAGATCACC
* * * *
50698031 ACAAGGGCTTCCTTTTTATAGATCACT
1 ACAAAGGCTTCCTTTTCAAAGATCACC
*
50698058 GCAAAGGCTT
1 ACAAAGGCTT
50698068 ACCTCAAAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (27 bp):
ACAAAGGCTTCCTTTTCAAAGATCACC
Found at i:50699745 original size:50 final size:49
Alignment explanation
Indices: 50699518--50699754 Score: 278
Period size: 49 Copynumber: 4.8 Consensus size: 49
50699508 TAGCCAAAGC
* * * * **
50699518 TATCCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCAACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
50699567 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
50699616 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAC
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
50699666 CATCAGATACACGTAGTAGCCTACCCTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
50699717 TTTCGGGTACGCATAGTAG-CTGCACTTAGTACTACACA
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
50699755 TGCGACCTCA
Statistics
Matches: 161, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
49 88 0.55
50 57 0.35
51 15 0.09
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:50701958 original size:30 final size:31
Alignment explanation
Indices: 50701892--50701960 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
50701882 TAAAGATAAC
*
50701892 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
*
50701922 AA-AAACCCAGAATAAAGAAAT-CTAGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
50701951 AAGAAACCCA
1 AAGAAACCCA
50701961 AGATACGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.10
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:50705071 original size:98 final size:101
Alignment explanation
Indices: 50704929--50705166 Score: 338
Period size: 99 Copynumber: 2.4 Consensus size: 101
50704919 TAGCCAAAGC
* * ** *
50704929 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGTGACC-AATTATCCGGTACACGTA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACGTA
50704993 GTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * *
50705027 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTAACCATCTGATACACGTA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACGTA
* *
50705092 GTAGCCTGCCCTTAGTACTACACACGTGATCACAGT
66 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* *
50705128 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
50705167 TGCGACCTCA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
98 41 0.34
99 42 0.35
100 1 0.01
101 37 0.31
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (101 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCCGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:50705106 original size:50 final size:49
Alignment explanation
Indices: 50704929--50705166 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
50704919 TAGCCAAAGC
* * * *
50704929 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
50704978 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
50705027 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
50705077 CATCTGATACACGTAGTAGCCTGCCCTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
50705128 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
50705167 TGCGACCTCA
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 88 0.53
50 42 0.25
51 34 0.21
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:50709288 original size:16 final size:17
Alignment explanation
Indices: 50709267--50709298 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
50709257 CCCTGCCTCA
50709267 AAAAGGAAAA-AAAAAG
1 AAAAGGAAAAGAAAAAG
50709283 AAAAGGAAAAGAAAAA
1 AAAAGGAAAAGAAAAA
50709299 ACCCAACCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAGGAAAAGAAAAAG
Found at i:50722454 original size:45 final size:45
Alignment explanation
Indices: 50722387--50722604 Score: 332
Period size: 45 Copynumber: 4.9 Consensus size: 45
50722377 TATTGTACAG
*
50722387 TACTATTCGGGCCTTTGAGCCTAGCAGGGTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
50722432 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
50722477 TATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
50722522 TACTATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
** * *
50722567 CGCTATTCGGGCC-TCGAGCCTAGCAGGCGA-AATGCCGG
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGG
50722605 AGAATGAATT
Statistics
Matches: 160, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
43 7 0.04
44 15 0.09
45 138 0.86
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:50722843 original size:31 final size:31
Alignment explanation
Indices: 50722807--50722868 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
50722797 AATACATGAT
50722807 ATATTTATATCTATGGTTATGATACATTCGG
1 ATATTTATATCTATGGTTATGATACATTCGG
50722838 ATATTTATATCTATGGTTATGATACATTCGG
1 ATATTTATATCTATGGTTATGATACATTCGG
50722869 TCAAGGTGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (31 bp):
ATATTTATATCTATGGTTATGATACATTCGG
Found at i:50748745 original size:49 final size:49
Alignment explanation
Indices: 50748666--50748897 Score: 293
Period size: 49 Copynumber: 4.7 Consensus size: 49
50748656 TCTATTGTGA
*
50748666 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
50748715 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * *** **
50748766 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
50748815 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
50748865 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
50748898 TGCGTACCAG
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
49 74 0.47
50 44 0.28
51 39 0.25
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:50748940 original size:150 final size:150
Alignment explanation
Indices: 50748665--50748948 Score: 446
Period size: 150 Copynumber: 1.9 Consensus size: 150
50748655 ATCTATTGTG
50748665 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * * * *
50748730 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTGCAGGCA
50748795 ACTACGTGTATTAGATGGTT
131 ACTACGTGTATTAGATGGTT
*
50748815 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * *
50748880 ACTAAGTGCAAGCTACTATGCGTACCAGATAGCTTTTGCTACAAGTGTG-A-AAATATGTGCAGG
66 ACTAAGTGCAAGCTACTATGCGTACCAGATAAC-TTTGAT-CAAGTGTGTAGAAATAAGTGCAGG
50748943 CAACTA
129 CAACTA
50748949 AGTATCAGTT
Statistics
Matches: 122, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
150 109 0.89
151 6 0.05
152 7 0.06
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAAGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTGCAGGCA
ACTACGTGTATTAGATGGTT
Found at i:50753002 original size:43 final size:43
Alignment explanation
Indices: 50752945--50753071 Score: 166
Period size: 43 Copynumber: 3.0 Consensus size: 43
50752935 TGATATATGT
*
50752945 AGCATCCGAGCTCGTTGAGTGGTCTAAGTTCATTATGGATGCC
1 AGCATTCGAGCTCGTTGAGTGGTCTAAGTTCATTATGGATGCC
***
50752988 AGCATTCGAGCTCGTTGAGTGGTCTAAGTTCATTATGGATATG
1 AGCATTCGAGCTCGTTGAGTGGTCTAAGTTCATTATGGATGCC
* ** *
50753031 AGCA-TCTGAGCTTGTTGAGTGGTCCGAGTTCATAATGGATG
1 AGCATTC-GAGCTCGTTGAGTGGTCTAAGTTCATTATGGATG
50753072 AGATACATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 2 0.03
43 72 0.97
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
AGCATTCGAGCTCGTTGAGTGGTCTAAGTTCATTATGGATGCC
Found at i:50755642 original size:36 final size:36
Alignment explanation
Indices: 50755595--50755666 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
50755585 CATCGACCAT
50755595 GTTAAATGTGATGCCAAGGTATCTGGGTAAAGTACA
1 GTTAAATGTGATGCCAAGGTATCTGGGTAAAGTACA
*
50755631 GTTAAATGTGATGCCAAGGTCTCTGGGTAAAGTACA
1 GTTAAATGTGATGCCAAGGTATCTGGGTAAAGTACA
50755667 ATTATGATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (36 bp):
GTTAAATGTGATGCCAAGGTATCTGGGTAAAGTACA
Found at i:50756899 original size:15 final size:15
Alignment explanation
Indices: 50756876--50756924 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
50756866 TCATATTGTT
*
50756876 TCTTGGATTTCTTTA
1 TCTTAGATTTCTTTA
*
50756891 TCTTAGATTTCTTTG
1 TCTTAGATTTCTTTA
* *
50756906 TCCTAGACTTCTTTA
1 TCTTAGATTTCTTTA
50756921 TCTT
1 TCTT
50756925 GGTTTTCATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.18, G:0.10, T:0.57
Consensus pattern (15 bp):
TCTTAGATTTCTTTA
Found at i:50760752 original size:28 final size:28
Alignment explanation
Indices: 50760720--50760775 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
50760710 ATTGAAACAA
50760720 GTAAGCTGTATGTAAATAATACATCTAC
1 GTAAGCTGTATGTAAATAATACATCTAC
50760748 GTAAGCTGTATGTAAATAATACATCTAC
1 GTAAGCTGTATGTAAATAATACATCTAC
50760776 ATTGTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (28 bp):
GTAAGCTGTATGTAAATAATACATCTAC
Found at i:50761120 original size:50 final size:47
Alignment explanation
Indices: 50760926--50761244 Score: 209
Period size: 47 Copynumber: 6.8 Consensus size: 47
50760916 TTATTTGTGT
*
50760926 GCTAGTGTAAGA-CATGTCTGGGACAT-GCAT-TGCTACATTAT-GAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACA-TATGGAGA
* * * * * * *
50760971 GCCAGTGTAAGAACATGTTTGGGACAT-GCATCAGCCTCGAGATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCAC-ATATGGAGA
* * *
50761018 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATC-G-AC-TA-CGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATGGAGA
* *
50761059 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCACCGGCACGGATATGCGAGA
1 -G-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--ATATG-GAGA
* * * * *
50761112 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATATGGAGA
* *
50761161 G-TCAGTGTAAGATCATGTTTGGGACATGGCATC-G-ACATGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-ATGGA-GA
*
50761208 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
50761245 TTCTACCCCA
Statistics
Matches: 212, Mismatches: 37, Indels: 46
0.72 0.13 0.16
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 1 0.00
43 1 0.00
44 9 0.04
45 26 0.12
46 42 0.20
47 47 0.22
48 8 0.04
49 32 0.15
50 33 0.16
51 5 0.02
52 1 0.00
53 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATGGAGA
Found at i:50761184 original size:99 final size:96
Alignment explanation
Indices: 50761062--50761243 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 96
50761052 TACGAGATGT
*
50761062 GTCAGTGTAAGACCATGTCTGGGACATGGCACCGGCACGGAT-ATGCGA-GAGCTAGTGTAAGAC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCACC-G-AC--ATGATG-GATGAGCCAGTGTAAGAC
*
50761125 CATGTCTGGGACATGGCGTCGGCCTCAATTTTGATA
61 CATGTCTGGGACATGGCATCGGCCTCAATTTTGATA
* * *
50761161 GTCAGTGTAAGATCATGTTTGGGACATGGCATCGACATGATGGATGAGCCAGTGTAAGACCATGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCACCGACATGATGGATGAGCCAGTGTAAGACCATGT
50761226 CTGGGACATGGCATCGGC
66 CTGGGACATGGCATCGGC
50761244 ATTCTACCCC
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
95 4 0.05
96 39 0.51
97 2 0.03
98 1 0.01
99 30 0.39
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCACCGACATGATGGATGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCCTCAATTTTGATA
Found at i:50761231 original size:47 final size:46
Alignment explanation
Indices: 50760929--50761241 Score: 218
Period size: 46 Copynumber: 6.7 Consensus size: 46
50760919 TTTGTGTGCT
*
50760929 AGTGTAAGA-CATGTCTGGGACAT-GCATTGCTACATTAT-GA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-T-CGACA-TATGGATGAGCC
* * * *
50760974 AGTGTAAGAACATGTTTGGGACAT-GCATC-AGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATATG-GATG--AGCC
* * * *
50761021 AGTGTAAGA-CATGTCTAGGACAT-GCATCGAC-TACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATATG-GATGAGCC
* *
50761065 AGTGTAAGACCATGTCTGGGACATGGCACCGGCACGGATATGCGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-AC--ATATG-GATGAGCC
* * * * *
50761115 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-ATATGGATGAGCC
* *
50761164 AGTGTAAGATCATGTTTGGGACATGGCATCGACATGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACAT-ATGGATGAGCC
50761211 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
50761242 GCATTCTACC
Statistics
Matches: 217, Mismatches: 31, Indels: 38
0.76 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 15 0.07
45 27 0.12
46 50 0.23
47 47 0.22
48 3 0.01
49 31 0.14
50 35 0.16
51 7 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATATGGATGAGCC
Found at i:50763960 original size:43 final size:43
Alignment explanation
Indices: 50763907--50763992 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
50763897 TATATATGTG
* * *
50763907 GCATCCGAGCTCGTTGAATGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGTTGAATGGTCCAACTTCATAATGGATGCGA
* * *
50763950 GCATCTGAGCTCGTTGAGTGGTCTAACTTCATAATGGATGCGA
1 GCATCCGAGCTCGTTGAATGGTCCAACTTCATAATGGATGCGA
50763993 TACATGTGAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAATGGTCCAACTTCATAATGGATGCGA
Found at i:50764856 original size:33 final size:33
Alignment explanation
Indices: 50764818--50764901 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 33
50764808 GAGCCGTAGC
50764818 CCCATTTCAGTACAGTAGCAGTCTGGGCCTTAG
1 CCCATTTCAGTACAGTAGCAGTCTGGGCCTTAG
* **
50764851 CCCATTTCAGTGATAAAAGCAGTCTGGGCCTTAG
1 CCCATTTCAGT-ACAGTAGCAGTCTGGGCCTTAG
* *
50764885 TCCATATCAGTACAGTA
1 CCCATTTCAGTACAGTA
50764902 TGCAATCAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 14 0.33
34 28 0.67
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (33 bp):
CCCATTTCAGTACAGTAGCAGTCTGGGCCTTAG
Found at i:50775396 original size:12 final size:12
Alignment explanation
Indices: 50775361--50775398 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
50775351 AATTGTGAAA
*
50775361 ATTGAATTAGAG
1 ATTGAATTAGAT
50775373 ATTGAATTAGAT
1 ATTGAATTAGAT
*
50775385 ATTGAATAAGAT
1 ATTGAATTAGAT
50775397 AT
1 AT
50775399 GATATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (12 bp):
ATTGAATTAGAT
Found at i:50784027 original size:43 final size:43
Alignment explanation
Indices: 50783979--50784060 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
50783969 CATGTATCGT
* **
50783979 ATCCATTATCAACTCGGACTGCTCAACGAGCTCGGATGCTCGC
1 ATCCATAATCAACTCGGACCACTCAACGAGCTCGGATGCTCGC
*
50784022 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 ATCCATAATCAACTCGGACCACTCAACGAGCTCGGATGC
50784061 CACATATATC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.21
Consensus pattern (43 bp):
ATCCATAATCAACTCGGACCACTCAACGAGCTCGGATGCTCGC
Found at i:50790879 original size:39 final size:39
Alignment explanation
Indices: 50790836--50790922 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
50790826 CCGGCAATTA
*
50790836 GCCTGCTAGGTATAAACTTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
* *
50790875 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCATGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
50790914 GCCTGCTAG
1 GCCTGCTAG
50790923 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.24
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:50795309 original size:43 final size:43
Alignment explanation
Indices: 50795261--50795342 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
50795251 CATGTATCGT
* ** *
50795261 ATCCATTATGAACTCAGACTGCTCAATGAGCTCGGATGCTCGC
1 ATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTCGC
*
50795304 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
1 ATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGC
50795343 CACATATATC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (43 bp):
ATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCTCGC
Found at i:50797961 original size:27 final size:27
Alignment explanation
Indices: 50797793--50798178 Score: 208
Period size: 27 Copynumber: 14.3 Consensus size: 27
50797783 CCAATTATTG
* *
50797793 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
* * * * * * *
50797820 AAGTTCCCCCGATTTACATAATTATCG
1 AAATACCCTCGATTTATAAAATTACCA
*** * * *
50797847 TTTTACCCTCGATTTACAAAATTATCG
1 AAATACCCTCGATTTATAAAATTACCA
*** * *
50797874 TTTTACCCTCGATTTATAGAATTACTA
1 AAATACCCTCGATTTATAAAATTACCA
*** * * * *
50797901 TTTTACCCTTGATTTACAGAATTACTA
1 AAATACCCTCGATTTATAAAATTACCA
*** *
50797928 TTTTACCCTCGATTTATAAAATTACTA
1 AAATACCCTCGATTTATAAAATTACCA
* * *
50797955 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
*
50797982 AAATACCCTCGA-TCAGTAAAATTACCA
1 AAATACCCTCGATTTA-TAAAATTACCA
* * * * *
50798009 AAATACCCT-GGTCTGTAAAATTGCTA
1 AAATACCCTCGATTTATAAAATTACCA
* *
50798035 AAATACCC-CTGGTTTGTAAAATTACCA
1 AAATACCCTC-GATTTATAAAATTACCA
* *
50798062 AAATACCC-CTAGTTTGTAAAATTACCA
1 AAATACCCTCGA-TTTATAAAATTACCA
* * * *
50798089 AAATACCACT-GGTTTGTGAAATTACCG
1 AAATACC-CTCGATTTATAAAATTACCA
* *
50798116 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
* * *
50798143 AAATACCC-CTAATTTACAAAATTACAA
1 AAATACCCTC-GATTTATAAAATTACCA
50798170 AAATACCCT
1 AAATACCCT
50798179 TGACTTTCTA
Statistics
Matches: 291, Mismatches: 58, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
26 23 0.08
27 267 0.92
28 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATACCCTCGATTTATAAAATTACCA
Found at i:50798049 original size:80 final size:81
Alignment explanation
Indices: 50797944--50798151 Score: 242
Period size: 80 Copynumber: 2.6 Consensus size: 81
50797934 CCTCGATTTA
*
50797944 TAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACC
1 TAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACC
50798008 AAAATACC-CTGGTCTG
65 AAAATACCACTGGTCTG
* ** * **
50798024 TAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 TAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCA
*
50798089 AAATACCACTGGTTTG
66 AAATACCACTGGTCTG
* ** ** **
50798105 TGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 TAAAATTACTAAAATACCCCT-GGTTTACAAAATTACCAAAATACCCC
50798152 TAATTTACAA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 66 0.59
81 43 0.39
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (81 bp):
TAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCA
AAATACCACTGGTCTG
Found at i:50798240 original size:27 final size:27
Alignment explanation
Indices: 50797931--50798263 Score: 233
Period size: 27 Copynumber: 12.3 Consensus size: 27
50797921 ATTACTATTT
* * *
50797931 TACCCTCGATTTATAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
50797958 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
50797985 TACCC-TCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-TAAAATTACCAAAA
* * * *
50798012 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
50798038 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
50798065 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
50798092 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
*** *
50798119 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* ** * *
50798146 TACCCCTAATTTACAAAATTACAAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
50798173 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * * **
50798202 TACCATTTGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
50798229 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
50798256 CACCCTTG
1 TACCCTTG
50798264 TAGGGTGAAA
Statistics
Matches: 245, Mismatches: 53, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
26 22 0.09
27 198 0.81
28 9 0.04
29 16 0.07
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:50798324 original size:27 final size:27
Alignment explanation
Indices: 50798294--50798353 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
50798284 ACCCCTATTA
50798294 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
**
50798321 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
50798348 GGTAAA
1 GGTAAA
50798354 GTGACGAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.28, T:0.17
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:50798368 original size:27 final size:27
Alignment explanation
Indices: 50798302--50798358 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
50798292 TAGGTAAAAA
50798302 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
50798329 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
50798356 GAC
1 GAC
50798359 GAATATGCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.18
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:50799290 original size:25 final size:26
Alignment explanation
Indices: 50799168--50799315 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
50799158 AGGAAGTGCT
* *
50799168 AAAAGGGC-CATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50799193 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50799219 AAAAGGGCTTATGCCCTAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50799245 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
50799271 AAAAGGGCTT-TGCCTCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
50799296 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
50799316 ATTAAAGAGG
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
25 40 0.36
26 72 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:50799519 original size:42 final size:42
Alignment explanation
Indices: 50799460--50799548 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
50799450 TAGTCTCCCC
*
50799460 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
*
50799502 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
50799544 AAATG
1 AAATG
50799549 AGCCTATGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGATATTG
Found at i:50799610 original size:31 final size:31
Alignment explanation
Indices: 50799575--50799658 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
50799565 CGTTTACAAT
50799575 AAAGGCTTCGGCCCAGTGATATGATTCATAA
1 AAAGGCTTCGGCCCAGTGATATGATTCATAA
* * * *
50799606 AAAGGCTTCGGCCTAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATAA
50799637 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
50799659 TCGAGACTGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTCATAA
Found at i:50801094 original size:47 final size:46
Alignment explanation
Indices: 50800991--50801206 Score: 163
Period size: 47 Copynumber: 4.6 Consensus size: 46
50800981 ATATGCACGT
* * * *
50800991 TGATGTCATATCCCAGACATGGTCTTACACTAGC-A-CATCTCTCA-GC
1 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATATC-GAGGC
* *
50801037 CGATGCATGTCCCAAACATGTCTTACACTGGCTATCACTATCGAGGC
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTATCA-TATCGAGGC
* * * * *
50801084 TGATGCATGTCCTAGACATGTCTTACACTAGC-ACTCATCTCAATGC
1 TGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATATCGAGGC
** * * * *
50801130 CAATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATAAT-GTGGT
1 TGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-ATCGAGGC
*
50801178 TGATGCATGTCCCTGACATGTCTTACACT
1 TGATGCATGTCCCAGACATGTCTTACACT
50801207 AGCACACACA
Statistics
Matches: 133, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 12 0.09
45 13 0.10
46 26 0.20
47 62 0.47
48 19 0.14
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTGGCTATCATATCGAGGC
Done.