Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 154 of 320
Found at i:50801144 original size:94 final size:91
Alignment explanation
Indices: 50800962--50801212 Score: 267
Period size: 94 Copynumber: 2.7 Consensus size: 91
50800952 CCTAGATATT
* * * * * *
50800962 GTCTTACACTAGCTCTCATATATGCACGTTGATGTCATATCCCAGACATGGTCTTACACTAGCAC
1 GTCTTACACTGGCTATCATA-ATG-AGGCTGATG-CATGTCCTAGACAT-GTCTTACACTAGCAC
*
50801027 ATCTCTCAGCCGATGCATGTCCCAAACAT-
62 ATCTCTCAGCCAATGCATGTCCCAAACATG
50801056 GTCTTACACTGGCTATCACT-ATCGAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCAC-T
1 GTCTTACACTGGCTATCA-TAAT-GAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCACAT
*
50801119 CATCTCAATGCCAATGCCATGTCCCAGACATG
64 C-TCTC-A-GCCAATG-CATGTCCCAAACATG
* * * *
50801151 GTCTTACTCTGGCTCTCATAATGTGGTTGATGCATGTCCCT-GACATGTCTTACACTAGCACA
1 GTCTTACACTGGCTATCATAATGAGGCTGATGCATGT-CCTAGACATGTCTTACACTAGCACA
50801213 CACAAGTGCC
Statistics
Matches: 135, Mismatches: 12, Indels: 19
0.81 0.07 0.11
Matches are distributed among these distances:
90 2 0.01
91 19 0.14
92 13 0.10
93 15 0.11
94 64 0.47
95 22 0.16
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (91 bp):
GTCTTACACTGGCTATCATAATGAGGCTGATGCATGTCCTAGACATGTCTTACACTAGCACATCT
CTCAGCCAATGCATGTCCCAAACATG
Found at i:50803688 original size:46 final size:46
Alignment explanation
Indices: 50803637--50803765 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 46
50803627 GATGGTTGAG
*
50803637 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA-ACGAGA
* * * * * * *
50803683 TATCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGAACGAGA
50803730 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
50803766 GGGGCGGGTT
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 32 0.48
47 33 0.49
48 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAACGAGA
Found at i:50810465 original size:46 final size:45
Alignment explanation
Indices: 50810398--50810568 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
50810388 AACCCGCCCC
*
50810398 TAAGTGAACTCGGACTCAACTCAACAAGTTCGAACATTCGCATGCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT-CA
* *
50810444 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTT-ACAT-T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAA---C-A-TTCGCATCA
* *
50810492 TCA-CGAACTCGGACTCAACTCAACGAGTTC-AGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT-CA
*
50810537 TAAGTGAACTCGGATTCAACTCAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
50810569 GATGCTCAAC
Statistics
Matches: 104, Mismatches: 10, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCA
Found at i:50810515 original size:93 final size:93
Alignment explanation
Indices: 50810403--50810573 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
50810393 GCCCCTAAGT
*
50810403 GAACTCGGACTCAACTCAACAAGTTC-GAACATTCGCATGCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGTTCAG-ACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50810467 ACGAGTTCGAATGCCTAGTTACATTTCAC
65 ACGAGTTCGAATGCCTAGTTACATTTCAC
* *
50810496 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGATTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50810561 CGAGTTCGGATGC
66 CGAGTTCGAATGC
50810574 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATTTCAC
Found at i:50811025 original size:30 final size:30
Alignment explanation
Indices: 50810991--50811050 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50810981 ATTTAATACG
50810991 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50811021 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50811051 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50814132 original size:44 final size:46
Alignment explanation
Indices: 50814003--50814229 Score: 178
Period size: 50 Copynumber: 4.8 Consensus size: 46
50813993 TGGGGTAAGT
* *
50814003 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTATA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTATA
* *
50814049 TGCGTGCTGATGCCATATCCCAGACATGGTCTTGCACTAGCACATCGCT-TA
1 TGC---C-GATGCCATGTCCCAGACATGGTCTTACACTAGCAC-TCG-TATA
*
50814100 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTAT--A
* * * * * * * * *
50814145 TACTGATTCCATGTCCCGGACATGGTCTTACTCTGGCTCTCATAATG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGT-ATA
* *
50814192 TGGCTGATG-CATGTCCCTGACAT-GTCTTACACTAGCAC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
50814230 ACACAAGTGC
Statistics
Matches: 145, Mismatches: 22, Indels: 28
0.74 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 14 0.10
45 14 0.10
46 23 0.16
47 28 0.19
48 20 0.14
49 2 0.01
50 33 0.23
51 5 0.03
52 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTATA
Found at i:50814324 original size:19 final size:19
Alignment explanation
Indices: 50814300--50814339 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
50814290 AATTTCTACT
50814300 ATCCCAATTATCTTTTAGC
1 ATCCCAATTATCTTTTAGC
50814319 ATCCCAATTATCTTTTAGC
1 ATCCCAATTATCTTTTAGC
50814338 AT
1 AT
50814340 TCTCGATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (19 bp):
ATCCCAATTATCTTTTAGC
Found at i:50816525 original size:30 final size:30
Alignment explanation
Indices: 50816486--50816548 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
50816476 TCGTTGATTA
*
50816486 CTTAGTTAATTCTTAGTTATTGGATCACCT
1 CTTAGTTAATTCTTAGTTATTAGATCACCT
*
50816516 CTTATTTAATTCTTAGTTATTAGATCACCT
1 CTTAGTTAATTCTTAGTTATTAGATCACCT
50816546 CTT
1 CTT
50816549 TCAAATCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.49
Consensus pattern (30 bp):
CTTAGTTAATTCTTAGTTATTAGATCACCT
Found at i:50821894 original size:96 final size:96
Alignment explanation
Indices: 50821725--50821914 Score: 317
Period size: 96 Copynumber: 2.0 Consensus size: 96
50821715 GTGTTCGAAG
*
50821725 AAGTCTATCATCGAAAGGAACGATGGAGTAGACAAGGAACCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTATCATCGAAAGGAACGATGGAGCAGACAAGGAACCCAAGAAGCTTGGTTCGAGCAAGGG
*
50821790 AAAAGCCGAAGCCAAGAGGGTAAGGAGGAAT
66 AAAAGCCGAAGCCAAGAGGGTAAAGAGGAAT
* * * *
50821821 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAATAAGCTTGGTTCGAGCAAGGG
1 AAGTCTATCATCGAAAGGAACGATGGAGCAGACAAGGAACCCAAGAAGCTTGGTTCGAGCAAGGG
*
50821886 AAAGGCCGAAGCCAAGAGGGTAAAGAGGA
66 AAAAGCCGAAGCCAAGAGGGTAAAGAGGA
50821915 GCAAAAAGAA
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.38, C:0.16, G:0.34, T:0.12
Consensus pattern (96 bp):
AAGTCTATCATCGAAAGGAACGATGGAGCAGACAAGGAACCCAAGAAGCTTGGTTCGAGCAAGGG
AAAAGCCGAAGCCAAGAGGGTAAAGAGGAAT
Found at i:50823620 original size:35 final size:35
Alignment explanation
Indices: 50823574--50823643 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
50823564 CTTTCTTTTC
50823574 AGTTTTCACCTGAGATCATAACATACATACATTCA
1 AGTTTTCACCTGAGATCATAACATACATACATTCA
*
50823609 AGTTTTCACCTGAGATCATAACATACTTACATTCA
1 AGTTTTCACCTGAGATCATAACATACATACATTCA
50823644 TGGGAAAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.33
Consensus pattern (35 bp):
AGTTTTCACCTGAGATCATAACATACATACATTCA
Found at i:50824601 original size:24 final size:24
Alignment explanation
Indices: 50824542--50824602 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
50824532 TTATGATATA
*
50824542 AATTATTAT-AAAAAATATGAAAT
1 AATTATTATCAAAAAATATAAAAT
*
50824565 AATTAATTTTCAAAAAAT-TAAAATT
1 AATT-ATTATCAAAAAATATAAAA-T
*
50824590 TATTATTATCAAA
1 AATTATTATCAAA
50824603 TAACACAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 4 0.13
24 16 0.52
25 11 0.35
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (24 bp):
AATTATTATCAAAAAATATAAAAT
Found at i:50825463 original size:16 final size:14
Alignment explanation
Indices: 50825438--50825471 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
50825428 ATGTAACAAC
50825438 TTTTATTTAAATTT
1 TTTTATTTAAATTT
50825452 ATTTTGATTTAAATTT
1 -TTTT-ATTTAAATTT
50825468 TTTT
1 TTTT
50825472 CACGCGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTTATTTAAATTT
Found at i:50828753 original size:43 final size:43
Alignment explanation
Indices: 50828706--50828800 Score: 172
Period size: 43 Copynumber: 2.2 Consensus size: 43
50828696 GGCCACACGT
*
50828706 CCGTGTCTCCAGGCCGTGTCCTTCACACGATAGAGACACATGG
1 CCGTGTCTCCAGGCCGTGTCCCTCACACGATAGAGACACATGG
*
50828749 CCGTGTCTCCAGGTCGTGTCCCTCACACGATAGAGACACATGG
1 CCGTGTCTCCAGGCCGTGTCCCTCACACGATAGAGACACATGG
50828792 CCGTGTCTC
1 CCGTGTCTC
50828801 AGCCCGTTTG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.19, C:0.34, G:0.25, T:0.22
Consensus pattern (43 bp):
CCGTGTCTCCAGGCCGTGTCCCTCACACGATAGAGACACATGG
Found at i:50830573 original size:47 final size:47
Alignment explanation
Indices: 50830521--50830692 Score: 192
Period size: 47 Copynumber: 3.6 Consensus size: 47
50830511 GGTAGAATGT
* *
50830521 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCCATCGAGGC
* * *
50830568 CGATGCCATGTCCTAGACATAGTCTTACACTGACT-ATCAAAATCGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATC--CATCGAGGC
* *
50830617 CGACGCCATGTCCCAGACATGTCTTACATTGGCTTACAT-C-TCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGC-T-CATCCATCGAGGC
50830664 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
50830693 AGCACACAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
46 26 0.25
47 43 0.41
48 14 0.13
49 21 0.20
51 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCCATCGAGGC
Found at i:50833461 original size:27 final size:27
Alignment explanation
Indices: 50833430--50833607 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
50833420 TAAATTGTAC
50833430 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50833457 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50833483 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
50833511 GGTACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50833539 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50833566 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50833593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50833608 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50833544 original size:82 final size:81
Alignment explanation
Indices: 50833433--50833586 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
50833423 ATTGTACAGC
* *
50833433 ACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTG
1 ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGTG
50833497 CGAATTGACCATGCGGT
65 CGAATTGACCATGCGGT
** *
50833514 ACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTG
1 ACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
*
50833579 CGAGTTGA
65 CGAATTGA
50833587 TTATATAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 13 0.20
82 51 0.78
83 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGC
GAATTGACCATGCGGT
Found at i:50833604 original size:82 final size:81
Alignment explanation
Indices: 50833427--50833607 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
50833417 GATTAAATTG
* *
50833427 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50833492 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
50833508 TGCGGTACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50833572 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50833590 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50833608 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50841515 original size:27 final size:27
Alignment explanation
Indices: 50841484--50841661 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50841474 TAAATTGTAC
50841484 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50841511 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50841537 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50841565 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50841593 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50841620 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50841647 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50841662 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50841598 original size:82 final size:81
Alignment explanation
Indices: 50841485--50841640 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50841475 AAATTGTACA
* *
50841485 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50841549 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50841566 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50841631 TGCGAGTTGA
65 TGCGAATTGA
50841641 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50841652 original size:82 final size:81
Alignment explanation
Indices: 50841481--50841661 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50841471 GATTAAATTG
* *
50841481 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50841546 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50841562 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50841626 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50841644 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50841662 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50843721 original size:2 final size:2
Alignment explanation
Indices: 50843714--50843742 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50843704 CTATGAACTT
50843714 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
50843743 TCTATCATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50848400 original size:40 final size:40
Alignment explanation
Indices: 50848349--50848741 Score: 574
Period size: 40 Copynumber: 9.8 Consensus size: 40
50848339 ATTTGAATTT
* * * *
50848349 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
50848389 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
50848429 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
50848469 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
50848509 TATCCGGGCTAAGACCCGCAGGTATTTGTGCGTGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
50848549 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
50848589 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
* *
50848631 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* *
50848671 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
50848711 T-GCCTGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCC-GGGCTAAGACCCGAAGGCATTTGTGC
50848742 TTGTGGTAAT
Statistics
Matches: 329, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 287 0.87
41 3 0.01
42 37 0.11
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:50850586 original size:20 final size:20
Alignment explanation
Indices: 50850558--50850618 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 20
50850548 ATTCATTTTT
*
50850558 ATTCGTATAAACTGTAATTC
1 ATTCATATAAACTGTAATTC
*
50850578 ATTCATAT-AACTAGTAGTTC
1 ATTCATATAAACT-GTAATTC
* * *
50850598 A-TCCTATAACCAGTAATTC
1 ATTCATATAAACTGTAATTC
50850617 AT
1 AT
50850619 CAGTAATAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (20 bp):
ATTCATATAAACTGTAATTC
Found at i:50850605 original size:19 final size:19
Alignment explanation
Indices: 50850571--50850678 Score: 69
Period size: 20 Copynumber: 5.5 Consensus size: 19
50850561 CGTATAAACT
* *
50850571 GTAATTCATTCATATAACTA
1 GTAATTCA-TCCTATAACCA
*
50850591 GTAGTTCATCCTATAACCA
1 GTAATTCATCCTATAACCA
*
50850610 GTAATTCATCAGTAATAA-CA
1 GTAATTCATC-CT-ATAACCA
* *
50850630 GTAATTTATCTGTATCAA-CA
1 GTAATTCATC-CTAT-AACCA
*
50850650 GTAATTCATCTGTATCAA-CA
1 GTAATTCATC-CTAT-AACCA
50850670 GTAATTCAT
1 GTAATTCAT
50850679 TCATTTCAAC
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
19 20 0.26
20 53 0.69
21 4 0.05
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (19 bp):
GTAATTCATCCTATAACCA
Found at i:50850689 original size:20 final size:20
Alignment explanation
Indices: 50850608--50850678 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
50850598 ATCCTATAAC
*
50850608 CAGTAATTCATCAGTAAT-AA
1 CAGTAATTCATCTGT-ATCAA
*
50850628 CAGTAATTTATCTGTATCAA
1 CAGTAATTCATCTGTATCAA
50850648 CAGTAATTCATCTGTATCAA
1 CAGTAATTCATCTGTATCAA
50850668 CAGTAATTCAT
1 CAGTAATTCAT
50850679 TCATTTCAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 2 0.04
20 45 0.96
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (20 bp):
CAGTAATTCATCTGTATCAA
Found at i:50850689 original size:40 final size:40
Alignment explanation
Indices: 50850562--50850678 Score: 109
Period size: 40 Copynumber: 3.0 Consensus size: 40
50850552 ATTTTTATTC
* * *
50850562 GTATAAACTGTAATTCATTCA-T-ATAACTAGTAGTTCATC-
1 GTATCAACAGTAATTCA-TCAGTAATAAC-AGTAATTCATCT
* *
50850601 CTAT-AACCAGTAATTCATCAGTAATAACAGTAATTTATCT
1 GTATCAA-CAGTAATTCATCAGTAATAACAGTAATTCATCT
*
50850641 GTATCAACAGTAATTCATCTGT-ATCAACAGTAATTCAT
1 GTATCAACAGTAATTCATCAGTAAT-AACAGTAATTCAT
50850679 TCATTTCAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
38 5 0.08
39 24 0.37
40 34 0.52
41 2 0.03
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (40 bp):
GTATCAACAGTAATTCATCAGTAATAACAGTAATTCATCT
Found at i:50853511 original size:25 final size:25
Alignment explanation
Indices: 50853483--50853550 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
50853473 GACCCATTTC
*
50853483 ATAACTCATGTGAACATTTACAGTT
1 ATAACTCGTGTGAACATTTACAGTT
* * *
50853508 ATAACTCGTGTGAGCAGTTACCGTT
1 ATAACTCGTGTGAACATTTACAGTT
* *
50853533 ACAACTTGTGTGAACATT
1 ATAACTCGTGTGAACATT
50853551 CTCCCTCCTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (25 bp):
ATAACTCGTGTGAACATTTACAGTT
Found at i:50854380 original size:48 final size:47
Alignment explanation
Indices: 50854318--50854461 Score: 180
Period size: 48 Copynumber: 3.0 Consensus size: 47
50854308 ACTCAAGAGT
* * * *
50854318 CTCGCACCCTAAGTGCCAATATCATGACACGAAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGC-CGAAGCCAAATCAATGAAA
* *
50854366 CTCGCACCCGAAGTGCTAATATCATGGCCTGAAGTCAAATTAATGAAA
1 CTCGCACCCGAAGTGCTAATATCATGGCC-GAAGCCAAATCAATGAAA
* * *
50854414 CTCGCACCCGAAGTGCTAATATCTTGGCTCGAAGCCATATAAATGAAA
1 CTCGCACCCGAAGTGCTAATATCATGGC-CGAAGCCAAATCAATGAAA
50854462 TTGAATTTTA
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 1 0.01
48 82 0.98
49 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (47 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCGAAGCCAAATCAATGAAA
Found at i:50864918 original size:43 final size:43
Alignment explanation
Indices: 50864835--50864982 Score: 113
Period size: 43 Copynumber: 3.4 Consensus size: 43
50864825 TCATAAGCTC
* * * * *
50864835 ATACAATGCCAACGTCCTAGAC-GTGGTCTTACATGT-AATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCGTACACGTAAATCAA
* * *
50864877 ATGCCGATGCCACTGTCCCAGACAGGGTCGTACACG-AAATCAT
1 AT-ACGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCAA
* * * * *
50864920 ATACGATGTCAATGTCCTAGACATGGTCTTACATGTAAATCAA
1 ATACGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCAA
* *
50864963 AAATTGATGCCAATGTCCCA
1 ATA-CGATGCCAATGTCCCA
50864983 AACGTGGTCT
Statistics
Matches: 81, Mismatches: 20, Indels: 8
0.74 0.18 0.07
Matches are distributed among these distances:
42 28 0.35
43 39 0.48
44 14 0.17
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (43 bp):
ATACGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCAA
Found at i:50864936 original size:42 final size:43
Alignment explanation
Indices: 50864881--50864982 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 43
50864871 AATCAAATGC
*
50864881 CGATGCCACTGTCCCAGACAGGGTCGTACACG-AAATCATATA
1 CGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCATATA
* * * * * * *
50864923 CGATGTCAATGTCCTAGACATGGTCTTACATGTAAATCAAAAA
1 CGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCATATA
*
50864966 TTGATGCCAATGTCCCA
1 -CGATGCCAATGTCCCA
50864983 AACGTGGTCT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
42 26 0.55
43 8 0.17
44 13 0.28
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACAGGGTCGTACACGTAAATCATATA
Found at i:50865511 original size:73 final size:73
Alignment explanation
Indices: 50865427--50865568 Score: 275
Period size: 73 Copynumber: 1.9 Consensus size: 73
50865417 CTTTTGCCCT
50865427 TGACATTTCACATTTTTCACAATTTAGTCCCTATTTCACAAAACACAAAATATTCAAAATTCGAC
1 TGACATTTCACATTTTTCACAATTTAGTCCCTATTTCACAAAACACAAAATATTCAAAATTCGAC
50865492 CACACCCC
66 CACACCCC
*
50865500 TGACATTTCACATTTTTCACAATTTAGTCCCTATTTCACAAAACACAAAATATTCAAAATTTGAC
1 TGACATTTCACATTTTTCACAATTTAGTCCCTATTTCACAAAACACAAAATATTCAAAATTCGAC
50865565 CACA
66 CACA
50865569 ACCATGCTTA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (73 bp):
TGACATTTCACATTTTTCACAATTTAGTCCCTATTTCACAAAACACAAAATATTCAAAATTCGAC
CACACCCC
Found at i:50871657 original size:42 final size:43
Alignment explanation
Indices: 50871555--50871712 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
50871545 AGCTCATACA
* * *
50871555 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATCG
* *
50871598 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
* * *
50871640 ATGCCAATG-CCTTAGACATGGTCTTACACGTAAATCACAA-ATCA
1 ATGCCAATGTCC-CAGACAGGGTCTTACACG-AAATCA-AATATCG
**
50871684 ATGCCAATGTCCCAGACTTGGTCTTACAC
1 ATGCCAATGTCCCAGACAGGGTCTTACAC
50871713 CATAACACAT
Statistics
Matches: 97, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 2 0.02
42 25 0.26
43 42 0.43
44 26 0.27
45 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:50875866 original size:40 final size:40
Alignment explanation
Indices: 50875808--50875992 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
50875798 AAACCAAGTA
* *
50875808 CCTTCGGGATTTAG-CCGGATATCGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * * *
50875847 CCTTTGGGACTTAACCCGGATATAGTAACTCACACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * * *** *
50875887 CCTTCGGGTCTTAGCCCAGAAATAGTTGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
50875927 CCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
50875970 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
50875993 CATCCGAATA
Statistics
Matches: 114, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 11 0.10
40 71 0.62
43 32 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:50884366 original size:44 final size:45
Alignment explanation
Indices: 50884242--50884386 Score: 144
Period size: 44 Copynumber: 3.4 Consensus size: 45
50884232 CCCGGACGTA
* * * *
50884242 GTCTTACATGT-AA-TTCAGTA-TCGATGCCTCTGTCCCAGACAGG
1 GTCTTACACGTAAATTTCA-TATTCGATGTCTGTGTCCCAGACATG
* *
50884285 GTCTTATACG-AAA--TCATATACGATGTC-GATGTCCCAGACATG
1 GTCTTACACGTAAATTTCATATTCGATGTCTG-TGTCCCAGACATG
*
50884327 GTCTTACACGTAAATTTCA-ATTCGATGTCTGTGTCCCAGACATA
1 GTCTTACACGTAAATTTCATATTCGATGTCTGTGTCCCAGACATG
*
50884371 GTCTTACACGTTAATT
1 GTCTTACACGTAAATT
50884387 CAGATCAATA
Statistics
Matches: 85, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.35
43 13 0.15
44 36 0.42
45 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (45 bp):
GTCTTACACGTAAATTTCATATTCGATGTCTGTGTCCCAGACATG
Found at i:50889113 original size:18 final size:17
Alignment explanation
Indices: 50889090--50889123 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
50889080 AATAACTCAT
50889090 TTATTAATCTAAAATGAG
1 TTATTAA-CTAAAATGAG
*
50889108 TTATTAACTAAGATGA
1 TTATTAACTAAAATGA
50889124 ACTCAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (17 bp):
TTATTAACTAAAATGAG
Found at i:50901593 original size:10 final size:10
Alignment explanation
Indices: 50901578--50901629 Score: 77
Period size: 10 Copynumber: 5.1 Consensus size: 10
50901568 TAATTTTAGG
*
50901578 ATTTATTTTC
1 ATTTATTTTT
50901588 ATTTATTTTT
1 ATTTATTTTT
*
50901598 ATTTATCTTT
1 ATTTATTTTT
50901608 ATTTATTTTT
1 ATTTATTTTT
50901618 ATTTATCTTTT
1 ATTTAT-TTTT
50901629 A
1 A
50901630 GAATTTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
10 33 0.87
11 5 0.13
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:50904943 original size:29 final size:29
Alignment explanation
Indices: 50904901--50905001 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
50904891 CATGAAATTG
50904901 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
50904930 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
50904959 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
50904987 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
50905002 ACTTACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:50919997 original size:42 final size:43
Alignment explanation
Indices: 50919918--50920019 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
50919908 TCCCGGATGT
* * **
50919918 GGTCTTACATATAATTCAGTATCGATGCCTCTGTCCCAAACAG
1 GGTCTTACACATAAATCAGTATCGATGCCGATGTCCCAAACAG
* *
50919961 GGTCTTACACA-AAATCAG-ATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACATAAATCAGTAT-CGATGCCGATGTCCCAAACAG
* *
50920003 AGTCTTACACTTAAATC
1 GGTCTTACACATAAATC
50920020 TCAAATTAAG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.04
42 32 0.65
43 15 0.31
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACACATAAATCAGTATCGATGCCGATGTCCCAAACAG
Found at i:50921570 original size:46 final size:45
Alignment explanation
Indices: 50921517--50921684 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
50921507 ACATCTAGCT
*
50921517 GATGCATGTCCTAGACATGTCTTACACTTGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTTGCTT-CGTCTCGAGGCC
* * *
50921563 GATGCATGTCCCAGACATGTCTTACA-TTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTT-GC-TTCGTCTCGAGGCC
* * * * * *
50921609 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTTGCT-TCGT-CTCGAGGCC
50921657 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
50921685 AGCTCACACA
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.02
46 51 0.50
47 27 0.27
48 19 0.19
49 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTTGCTTCGTCTCGAGGCC
Found at i:50921661 original size:94 final size:92
Alignment explanation
Indices: 50921517--50921687 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
50921507 ACATCTAGCT
* * *
50921517 GATGCATGTCCTAGACATGTCTTACACTTGCTTACGTCTCGAGGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGACATG
*
50921582 TCTTACATTAGCACTCGTCTCAATGCC
66 TCTTACACTAGCACTCGTCTCAATGCC
* *
50921609 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCCCAGA
1 GATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCATGTCCCAGA
50921672 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
50921688 TCACACAACT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 49 0.71
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCTAGACATGTCTTACACTGGCTTACATATCGAGGCCGATGCATGTCCCAGACATG
TCTTACACTAGCACTCGTCTCAATGCC
Found at i:50927946 original size:20 final size:21
Alignment explanation
Indices: 50927921--50927960 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50927911 TCTTTGAAAT
50927921 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
50927941 AGGGCAACACGCTCGTGTGG
1 AGGGCAACACGCCCGTGTGG
50927961 CTATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:50939449 original size:92 final size:93
Alignment explanation
Indices: 50939334--50939503 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
50939324 TATCTGTGTT
* *
50939334 GATGCCATGTCCTAGACATGGTCTTACACTGACACATC-T-CGTAGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACAC-TCATACGTAGCTGATACATGTCCCAGACA
50939397 TGTCTTACACTAGGACTCGTCTCAATGCC
65 TGTCTTACACTAGGACTCGTCTCAATGCC
* * * *
50939426 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATACATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTCAT-ACGTAGCTGATACATGTCCCAGACA
*
50939491 TGTCTTACGCTAG
65 TGTCTTACACTAG
50939504 CTCACACAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 2 0.03
92 33 0.49
94 33 0.49
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACTCATACGTAGCTGATACATGTCCCAGACAT
GTCTTACACTAGGACTCGTCTCAATGCC
Found at i:50950503 original size:38 final size:39
Alignment explanation
Indices: 50950412--50950506 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
50950402 TGGTACCATT
* * *
50950412 TGGTATGTAGGGTTGGATGGGTAGATTTTATCCCTATACT
1 TGGTGTGTAGGGTTGGATGGGTAGATTCTATCCC-ATACA
* *
50950452 TGGTGTGTAGGGTTGGGTGGGTCGATTCTATCCC-TACA
1 TGGTGTGTAGGGTTGGATGGGTAGATTCTATCCCATACA
*
50950490 TGGTGTGTCGGGTTGGA
1 TGGTGTGTAGGGTTGGA
50950507 CAGAGATGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 18 0.38
40 30 0.62
ACGTcount: A:0.15, C:0.12, G:0.37, T:0.37
Consensus pattern (39 bp):
TGGTGTGTAGGGTTGGATGGGTAGATTCTATCCCATACA
Found at i:50956494 original size:13 final size:13
Alignment explanation
Indices: 50956476--50956502 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50956466 TGGTTCGGCA
50956476 GGGACACGCCCGT
1 GGGACACGCCCGT
50956489 GGGACACGCCCGT
1 GGGACACGCCCGT
50956502 G
1 G
50956503 TGCGATTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.41, T:0.07
Consensus pattern (13 bp):
GGGACACGCCCGT
Found at i:50967313 original size:8 final size:8
Alignment explanation
Indices: 50967296--50967355 Score: 61
Period size: 8 Copynumber: 7.4 Consensus size: 8
50967286 ATTTTATGTT
*
50967296 TTATTTTA
1 TTATTATA
50967304 TTATTATA
1 TTATTATA
50967312 TTA-TAT-
1 TTATTATA
50967318 TATATTATA
1 T-TATTATA
50967327 TTATATTATA
1 -T-TATTATA
*
50967337 TTAATATA
1 TTATTATA
50967345 TTATTATA
1 TTATTATA
50967353 TTA
1 TTA
50967356 ATTTCTTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
6 1 0.02
7 5 0.11
8 29 0.64
9 1 0.02
10 9 0.20
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTATTATA
Found at i:50967336 original size:5 final size:5
Alignment explanation
Indices: 50967305--50967355 Score: 77
Period size: 5 Copynumber: 10.0 Consensus size: 5
50967295 TTTATTTTAT
50967305 TATTA TATTA TATTA TATTA TATTA TATTA TATTA -ATATA TTATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA -TATTA TATTA
50967356 ATTTCTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
4 2 0.05
5 37 0.86
6 2 0.05
7 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:50990991 original size:23 final size:22
Alignment explanation
Indices: 50990965--50991013 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
50990955 TAAATTTCAC
50990965 CCCCAGACAAAATGACCATTTTG
1 CCCC-GACAAAATGACCATTTTG
* *
50990988 CCCCGAGAAAATGACCGTTTTG
1 CCCCGACAAAATGACCATTTTG
50991010 CCCC
1 CCCC
50991014 TAACCTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.29, C:0.35, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCCGACAAAATGACCATTTTG
Found at i:50993771 original size:19 final size:19
Alignment explanation
Indices: 50993747--50993790 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
50993737 GAGTTTCAAC
50993747 AATAATCATAGCAAATTTT
1 AATAATCATAGCAAATTTT
50993766 AATAATCATAGCAAATTTT
1 AATAATCATAGCAAATTTT
50993785 AATAAT
1 AATAAT
50993791 GATTCTTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (19 bp):
AATAATCATAGCAAATTTT
Found at i:50995069 original size:38 final size:38
Alignment explanation
Indices: 50995013--50995194 Score: 159
Period size: 38 Copynumber: 4.8 Consensus size: 38
50995003 AGAAACGTAA
** * **
50995013 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCTGG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
* * * * **
50995051 TATTATTCAAGCTCTGTGCCTAGTAGGCTTTGTACTGG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
* * * ** *
50995089 TGTCATTCAGGCTCTATGCCTAGTTGGCTTTGTGCCAG
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
*
50995127 TGTTATTC-AGACTCTGTGCCTAGCAGGCTTCATGCCAG
1 TGTTATTCAAG-CTCTGTGCCTAGCAGGCTTCGTGCCAG
* * *
50995165 TGTTTTTCAGGCTCTGTGTCTAGCAGGCTT
1 TGTTATTCAAGCTCTGTGCCTAGCAGGCTT
50995195 TGTACCAATA
Statistics
Matches: 117, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 115 0.98
39 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.37
Consensus pattern (38 bp):
TGTTATTCAAGCTCTGTGCCTAGCAGGCTTCGTGCCAG
Found at i:50995216 original size:114 final size:114
Alignment explanation
Indices: 50995013--50995270 Score: 266
Period size: 114 Copynumber: 2.3 Consensus size: 114
50995003 AGAAACGTAA
* * * ** *
50995013 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCTGGTATTATTCAAGCTCTGTGCCTAGTAGG
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
*** * ****
50995078 CTTTGTACTGGTGTCATTCAGGCTCTATGCCTAGTTGGCTTTGTGCCAG
66 CTTTGTACCAATCTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
* * * * *
50995127 TGTTATTCAGACTCTGTGCCTAGCAGGCTTCATGCCAGTGTTTTTCAGGCTCTGTGTCTAGCAGG
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
* * * **
50995192 CTTTGTACCAATACT-ATTCGGGCTCTGTGTCTAGCAAACTTTGTGTTAG
66 CTTTGTACCAAT-CTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
* *
50995241 TGTTATTTGGATTCTGTGCCTAGCAGGCTT
1 TGTTATTCGGACTCTGTGCCTAGCAGGCTT
50995271 TGTGCCTAGT
Statistics
Matches: 116, Mismatches: 27, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
114 115 0.99
115 1 0.01
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.38
Consensus pattern (114 bp):
TGTTATTCGGACTCTGTGCCTAGCAGGCTTCATGCCAGTATTATTCAAGCTCTGTGCCTAGCAGG
CTTTGTACCAATCTCATTCAGGCTCTATGCCTAGCAAACTTTGTGCCAG
Found at i:51001447 original size:38 final size:38
Alignment explanation
Indices: 51001347--51001534 Score: 146
Period size: 38 Copynumber: 4.9 Consensus size: 38
51001337 AGAAGCATAA
* * *
51001347 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTCGTGCCGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * * *
51001385 TGTTATT-TGAACT-TTATGCTTAGCAGGCTTCGTGCTGG
1 TGTTATTCAG-GCTCTGA-GCCTAGCAGGCTTCGTGCCGG
* * *
51001423 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTTGTACTGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * *
51001461 TGTTATTCAGGCTCTGTGCCTAGTAGGTTTTGTGCCGG
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
* * * * * * *
51001499 AGTTATTCAAGTTTTGTGCCTAGCAAGCTTTGTGCC
1 TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCC
51001535 TAACAAGCTT
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
37 2 0.02
38 117 0.96
39 3 0.02
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.38
Consensus pattern (38 bp):
TGTTATTCAGGCTCTGAGCCTAGCAGGCTTCGTGCCGG
Found at i:51001530 original size:16 final size:16
Alignment explanation
Indices: 51001506--51001544 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51001496 CGGAGTTATT
* *
51001506 CAAGTTTTGTGCCTAG
1 CAAGCTTTGTGCCTAA
51001522 CAAGCTTTGTGCCTAA
1 CAAGCTTTGTGCCTAA
51001538 CAAGCTT
1 CAAGCTT
51001545 CGTGTCGGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (16 bp):
CAAGCTTTGTGCCTAA
Found at i:51001567 original size:38 final size:38
Alignment explanation
Indices: 51001525--51001609 Score: 118
Period size: 38 Copynumber: 2.2 Consensus size: 38
51001515 TGCCTAGCAA
*
51001525 GCTTTGTGCCTAACAAG-CTTCGTGTCGGTGTTATTCGG
1 GCTTTGTGCCTAAC-AGTCTTCGTGTCGGTGTTATTCAG
* * *
51001563 GCTTTGTGCCTAGCAGTCTTTGTGTTGGTGTTATTCAG
1 GCTTTGTGCCTAACAGTCTTCGTGTCGGTGTTATTCAG
51001601 GCTTTGTGC
1 GCTTTGTGC
51001610 TAGCGCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 2 0.05
38 40 0.95
ACGTcount: A:0.11, C:0.19, G:0.29, T:0.41
Consensus pattern (38 bp):
GCTTTGTGCCTAACAGTCTTCGTGTCGGTGTTATTCAG
Found at i:51020695 original size:39 final size:39
Alignment explanation
Indices: 51020639--51020821 Score: 276
Period size: 39 Copynumber: 4.7 Consensus size: 39
51020629 CCAACACAAT
* *
51020639 TGCCTTCGAGACTTAGCCTGGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
51020678 TGCCTTCGGCACATAGCCCGGATGTAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
51020717 TGCCTTTGGAACTTAGCCCAGATATAACACCAGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
51020756 TGCCTTCGGGACTTAGCCCTGATATAACACCAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
51020795 TGCCTTCGGGACTTAGCCCGGATATAA
1 TGCCTTCGGGACTTAGCCCGGATATAA
51020822 ATCTCACACA
Statistics
Matches: 129, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:51026354 original size:29 final size:27
Alignment explanation
Indices: 51026336--51026405 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
51026326 ATATTAAGTC
51026336 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
51026363 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
51026391 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51026406 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:51026399 original size:28 final size:28
Alignment explanation
Indices: 51026336--51026433 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
51026326 ATATTAAGTC
*
51026336 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51026363 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51026391 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51026420 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51026434 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51030770 original size:35 final size:35
Alignment explanation
Indices: 51030731--51030801 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
51030721 TCTAGGATCA
*
51030731 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* *
51030766 CATATCTTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
51030801 C
1 C
51030802 TCCGAAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:51033596 original size:47 final size:47
Alignment explanation
Indices: 51033524--51034217 Score: 1136
Period size: 47 Copynumber: 14.6 Consensus size: 47
51033514 GATAATTGTG
* * *
51033524 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51033571 ATGGGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033618 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033667 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033714 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033761 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033808 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033857 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51033904 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51033953 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
51034000 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
51034049 ATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGCCGAAGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51034098 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
51034145 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51034192 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
51034218 TCCTGAAGGG
Statistics
Matches: 612, Mismatches: 27, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
47 380 0.62
49 232 0.38
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51033631 original size:96 final size:96
Alignment explanation
Indices: 51033524--51034217 Score: 1179
Period size: 96 Copynumber: 7.3 Consensus size: 96
51033514 GATAATTGTG
* *
51033524 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGGGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
51033587 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51033618 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51033683 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51033714 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51033777 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51033808 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51033873 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51033904 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
51033969 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51034000 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
51034065 ATATGTGGTAAGGCCTAATGGCCGAAGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
51034098 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
51034161 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
51034192 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
51034218 TCCTGAAGGG
Statistics
Matches: 573, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
94 147 0.26
95 3 0.01
96 380 0.66
98 43 0.08
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:51033673 original size:143 final size:143
Alignment explanation
Indices: 51033524--51034217 Score: 1171
Period size: 143 Copynumber: 4.9 Consensus size: 143
51033514 GATAATTGTG
* * * *
51033524 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGGGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
51033589 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
51033654 GCCGATGTGATGA
131 GCCGATGTGATGA
51033667 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
51033732 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
51033795 GCCGATGTGATGA
131 GCCGATGTGATGA
51033808 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
51033873 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
51033938 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* *
51033953 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
51034018 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGGTAAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
*
51034083 TGGCCGAAGTGATGA
129 TGGCCGATGTGATGA
*
51034098 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
51034163 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
51034218 TCCTGAAGGG
Statistics
Matches: 525, Mismatches: 20, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
141 56 0.11
142 1 0.00
143 283 0.54
145 185 0.35
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:51040486 original size:35 final size:35
Alignment explanation
Indices: 51040447--51040517 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
51040437 TCTAGGATAA
*
51040447 CATATCTTTGAAGATCCCCTTT-CATATTTGCCAAG
1 CATATCTTTGAAGAT-CACTTTCCATATTTGCCAAG
*
51040482 CATATCTTTGAAGATTACTTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACTTTCCATATTTGCCAAG
51040517 C
1 C
51040518 TCCGAAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 29 0.88
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (35 bp):
CATATCTTTGAAGATCACTTTCCATATTTGCCAAG
Found at i:51042986 original size:50 final size:52
Alignment explanation
Indices: 51042876--51043007 Score: 178
Period size: 50 Copynumber: 2.6 Consensus size: 52
51042866 ATGAACAAAT
* * *
51042876 GAGTTACTTAATGCATGACTTAATTTAATGATACAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
* * *
51042928 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
* *
51042978 GAGTTACATAATGCATGACATTATTAAATG
1 GAGTTACATAATGCATGACATAATTTAATG
51043008 CAGAACACAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 34 0.49
51 13 0.19
52 23 0.33
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATACAAACTTTAACTAACATGA
Found at i:51043078 original size:39 final size:39
Alignment explanation
Indices: 51043024--51043100 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
51043014 ACATATTAAG
* *
51043024 GATGTTCAAACTATGACATAATTAAAGACTCACACTAAT
1 GATGTTCAAACTATGACATAATTAAAGACACAAACTAAT
51043063 GATGTTCAAACTATGACATAATTAAAGACACAAACTAA
1 GATGTTCAAACTATGACATAATTAAAGACACAAACTAA
51043101 AATAACTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.26
Consensus pattern (39 bp):
GATGTTCAAACTATGACATAATTAAAGACACAAACTAAT
Found at i:51044268 original size:44 final size:42
Alignment explanation
Indices: 51044165--51044287 Score: 117
Period size: 44 Copynumber: 2.8 Consensus size: 42
51044155 AGCTCGTACA
* * *
51044165 ATGCCAACGTCCCAGACATGGTCTTACATGTAAACAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACG-AAACAAAAATCG
*
51044208 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAA-AATAGAAGTCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAACAA-A-AA-TCG
*
51044252 ATGCCAAGGTCCCAGAC-GTGGTCTTACACGATAACA
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGA-AACA
51044288 TATCGAAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
41 2 0.03
42 6 0.09
43 26 0.39
44 28 0.42
45 3 0.05
46 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAACAAAAATCG
Found at i:51046067 original size:40 final size:43
Alignment explanation
Indices: 51045975--51046119 Score: 119
Period size: 44 Copynumber: 3.4 Consensus size: 43
51045965 CAATGCCAAC
* * *
51045975 GTCC-CAGACGTGGTCTTACAT-TTAATCAAATATTGATGCCACT
1 GTCCTCAGACATGGTCTTACATGTAAATCAAATA-CGATGCCA-T
*
51046018 GT-CTCAGACA-GG-GTTACATG-AAATCAAATACGATGCCGAT
1 GTCCTCAGACATGGTCTTACATGTAAATCAAATACGATGCC-AT
51046058 GTCCT-AGACATGGTCTTACATGTAAATCTCAAAT-CGATGCCAAT
1 GTCCTCAGACATGGTCTTACATGTAAA--TCAAATACGATGCC-AT
**
51046102 GTCC-CAGATGTGGTCTTA
1 GTCCTCAGACATGGTCTTA
51046120 AACAAAATCA
Statistics
Matches: 84, Mismatches: 8, Indels: 19
0.76 0.07 0.17
Matches are distributed among these distances:
40 14 0.17
41 20 0.24
42 10 0.12
43 10 0.12
44 24 0.29
45 6 0.07
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
GTCCTCAGACATGGTCTTACATGTAAATCAAATACGATGCCAT
Found at i:51053761 original size:44 final size:43
Alignment explanation
Indices: 51053617--51053774 Score: 155
Period size: 44 Copynumber: 3.7 Consensus size: 43
51053607 AGCTCGTACA
* * *
51053617 ATGCCAACATCCCAGACGTGGTCTTACATGT--AGTCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAAGTC-AA-ATCG
* * *
51053660 ATGCC-ACTGTCCCAGACAAGGTCTTAGAC--AAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAAGTCAAAT-CG
* *
51053702 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATGTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAA-GTCAAATCG
*
51053746 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
51053775 AAAATCACAT
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.02
42 30 0.32
43 25 0.27
44 31 0.33
45 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAAGTCAAATCG
Found at i:51056667 original size:40 final size:40
Alignment explanation
Indices: 51056630--51056815 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
51056620 GCTACTCGTT
*
51056630 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
51056670 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** *
51056710 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51056750 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
51056791 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51056816 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 110 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51056714 original size:80 final size:81
Alignment explanation
Indices: 51056597--51056815 Score: 211
Period size: 80 Copynumber: 2.8 Consensus size: 81
51056587 AAATCACGTA
* * ** *
51056597 CCTTCGGAAT-TTAA-CCGGATATAG-CTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGG-ATCTTAACCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATT-
51056658 TAGTAACTCGCACAAATG
64 TAGTAACTCGCACAAATG
* * * **
51056676 CCTTTGGGA-CTTAACCCGGATTTAGT-AACTCGCACAAATGCCTTC-GGATCTTAGTTCGGATT
1 CC-TTCGGATCTTAACCCGGATATAGTCAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATT
*
51056738 TAGTAACTCGTACAAATG
64 TAGTAACTCGCACAAATG
** * *
51056756 CCTTCGGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGA
51056816 CATCATTCAA
Statistics
Matches: 113, Mismatches: 18, Indels: 17
0.76 0.12 0.11
Matches are distributed among these distances:
79 15 0.13
80 83 0.73
81 15 0.13
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTA
GTAACTCGCACAAATG
Found at i:51064816 original size:40 final size:40
Alignment explanation
Indices: 51064591--51064816 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
51064581 GCTACTCGTT
* *
51064591 CAAATGCCTTCGGGACATCGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
51064631 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
51064671 AAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * *
51064711 CAAATGCCTTC-GGATCTTAGTTCAGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51064751 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
51064792 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51064817 CATCATTCAA
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 147 0.90
41 14 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51075344 original size:38 final size:38
Alignment explanation
Indices: 51075298--51075386 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 38
51075288 CCCAAATAGC
*
51075298 GCTA-GCACAAAGCCTGAATAACACCAACACAAAGAC-T
1 GCTAGGCACAAAGCCCGAATAACACCAACACAAAG-CTT
* *
51075335 GCTAGGCACAAAGCCCGAATAACACCGACACGAAGCTT
1 GCTAGGCACAAAGCCCGAATAACACCAACACAAAGCTT
*
51075373 GTTAGGCACAAAGC
1 GCTAGGCACAAAGC
51075387 TTGCTAGGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
37 5 0.11
38 41 0.89
ACGTcount: A:0.40, C:0.29, G:0.19, T:0.11
Consensus pattern (38 bp):
GCTAGGCACAAAGCCCGAATAACACCAACACAAAGCTT
Found at i:51075388 original size:16 final size:16
Alignment explanation
Indices: 51075367--51075405 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51075357 CACCGACACG
*
51075367 AAGCTTGTTAGGCACA
1 AAGCTTGCTAGGCACA
51075383 AAGCTTGCTAGGCACA
1 AAGCTTGCTAGGCACA
*
51075399 AAACTTG
1 AAGCTTG
51075406 AATAACTCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (16 bp):
AAGCTTGCTAGGCACA
Found at i:51075419 original size:38 final size:38
Alignment explanation
Indices: 51075377--51075563 Score: 153
Period size: 38 Copynumber: 4.9 Consensus size: 38
51075367 AAGCTTGTTA
* * *
51075377 GGCACAAAGCTTGCTAGGCACAAAACTTGAATAACTCC
1 GGCACAAAGCCTGCTAGGCACAAAACCTGAATAACACC
* * * *
51075415 GGCACAAAACCTACTAGGCACAGAGCCTG-ATAACACC
1 GGCACAAAGCCTGCTAGGCACAAAACCTGAATAACACC
* * * * *
51075452 AGTACAAAGCCTGCTAGGCTCAGAGCCTGAATAACACC
1 GGCACAAAGCCTGCTAGGCACAAAACCTGAATAACACC
* * * * ** *
51075490 AGCACGAAGCCTGCTAAGCA-TAAAGTTCAAATAACACC
1 GGCACAAAGCCTGCTAGGCACAAAACCT-GAATAACACC
* * *
51075528 GGCACGAAGCCTGCTAGGCACAAAGCCCGAATAACA
1 GGCACAAAGCCTGCTAGGCACAAAACCTGAATAACA
51075564 TTATGCTTCT
Statistics
Matches: 116, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
37 33 0.28
38 81 0.70
39 2 0.02
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (38 bp):
GGCACAAAGCCTGCTAGGCACAAAACCTGAATAACACC
Found at i:51075459 original size:37 final size:38
Alignment explanation
Indices: 51075390--51075491 Score: 116
Period size: 37 Copynumber: 2.7 Consensus size: 38
51075380 ACAAAGCTTG
* * * * * *
51075390 CTAGGCACAAAACTTGAATAACTCCGGCACAAAACCTA
1 CTAGGCACAGAGCCTGAATAACACCAGTACAAAACCTA
* *
51075428 CTAGGCACAGAGCCTG-ATAACACCAGTACAAAGCCTG
1 CTAGGCACAGAGCCTGAATAACACCAGTACAAAACCTA
*
51075465 CTAGGCTCAGAGCCTGAATAACACCAG
1 CTAGGCACAGAGCCTGAATAACACCAG
51075492 CACGAAGCCT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
37 31 0.57
38 23 0.43
ACGTcount: A:0.37, C:0.29, G:0.19, T:0.15
Consensus pattern (38 bp):
CTAGGCACAGAGCCTGAATAACACCAGTACAAAACCTA
Found at i:51081738 original size:38 final size:38
Alignment explanation
Indices: 51081614--51081877 Score: 181
Period size: 38 Copynumber: 6.9 Consensus size: 38
51081604 AAGCTTACTA
*
51081614 GGCACAAAGCCTGCTAGGCACAGAATCC--AAATAACACT
1 GGCACAAAGCCTGCTAGGCACAG-AGCCTGAAA-AACACT
** ** * * * ** *
51081652 AACACAAAGTTTGCTAGACACAGAGCCCGAATAGTATT
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
* *
51081690 GGTACAAAGCCTGCTAGACACAGAGCCTGAAAAACACT
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
** * *
51081728 GGCATGAAGCCTGCTAGGCACAGAGTCTGAATAACACT
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
** * ** *
51081766 GGCACAAAGCCAACTAGGCATAGAGCCTGAATGACACC
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
* * * * * * *
51081804 AGTACAAAGCCTACTAGGCACAGAGCTTGAATAATACC
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
* * * * *
51081842 AGCACGAAGCCTGCTAGGCACAAAGCCCGAATAACA
1 GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACA
51081878 TTACGTTTCT
Statistics
Matches: 176, Mismatches: 48, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
37 3 0.02
38 171 0.97
39 2 0.01
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (38 bp):
GGCACAAAGCCTGCTAGGCACAGAGCCTGAAAAACACT
Found at i:51083078 original size:19 final size:19
Alignment explanation
Indices: 51083054--51083097 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
51083044 TAGAAGAATC
51083054 ATTATTAAAATTTGCTATG
1 ATTATTAAAATTTGCTATG
51083073 ATTATTAAAATTTGCTATG
1 ATTATTAAAATTTGCTATG
51083092 ATTATT
1 ATTATT
51083098 GTTGAAACTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTATTAAAATTTGCTATG
Found at i:51095833 original size:27 final size:27
Alignment explanation
Indices: 51095803--51096115 Score: 305
Period size: 27 Copynumber: 11.6 Consensus size: 27
51095793 TTAGTTTACC
*
51095803 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
51095830 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
51095857 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
51095884 AAATTACCAAAATA-CCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
51095910 AAATTACCAAAATACCCCTCG-TTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
51095937 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
51095964 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
* **
51095991 AAATTACTAAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
51096018 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* **
51096045 AAATTACCAAAGTACCCCTGATTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
**** *
51096072 AAATTACCGTTTTA-CCCTCGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
51096099 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
51096116 TTTTAGGGTA
Statistics
Matches: 241, Mismatches: 36, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
26 34 0.14
27 199 0.83
28 8 0.03
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:51095973 original size:107 final size:106
Alignment explanation
Indices: 51095803--51096079 Score: 333
Period size: 107 Copynumber: 2.6 Consensus size: 106
51095793 TTAGTTTACC
* *
51095803 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTATTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTCGTTTGTAAAATTAC-AAAATACCC-CTATTTATAAAATTACCAAA
** ***
51095868 ATACCCCTGGTTTGTAAAATTACCAAAATACCCT-GGTTTGTA
64 ATACCCCTAATTTGTAAAATTACCAAAATACCCTCGACCTGTA
*
51095910 AAATTACCAAAATACCCCTCGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTCGTTTGTAAAATTA-CAAAATACCCCTA-TTTATAAAATTACCAAA
* *
51095975 ATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACCTGTA
64 ATACCCCTAATTTGTAAAATTACCAAAATACCCTCGACCTGTA
*** * * *
51096018 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTTACAAAATTACC
1 AAATTACCAAAATACCCCTCG-TTTGTAAAATTA-CAAAATACCCCT-ATTTATAAAATTACC
51096080 GTTTTACCCT
Statistics
Matches: 147, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
106 2 0.01
107 93 0.63
108 51 0.35
109 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (106 bp):
AAATTACCAAAATACCCCTCGTTTGTAAAATTACAAAATACCCCTATTTATAAAATTACCAAAAT
ACCCCTAATTTGTAAAATTACCAAAATACCCTCGACCTGTA
Found at i:51096232 original size:27 final size:27
Alignment explanation
Indices: 51096100--51096240 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 27
51096090 CGATTTATAA
* *
51096100 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
*
51096127 AAATACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* *
51096154 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
*
51096181 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * * *
51096208 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCTTATAGGGTAG
51096235 AATTAC
1 AATTAC
51096241 CATTTTACCC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTATAGGGTAG
Found at i:51096605 original size:26 final size:27
Alignment explanation
Indices: 51096576--51096635 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
51096566 CCACATATAT
**
51096576 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTAACCTAGCCACA
* *
51096602 ATATCTGTATCTGGTAACTTAGTCACA
1 ATATCTGTATCTGGTAACCTAGCCACA
51096629 ATATCTG
1 ATATCTG
51096636 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTAACCTAGCCACA
Found at i:51096817 original size:6 final size:6
Alignment explanation
Indices: 51096755--51096842 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
51096745 TTGCATTCAC
* * * *
51096755 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
51096804 -TCACCTG ATTCTG ATTCTG ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
51096843 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:51096833 original size:31 final size:31
Alignment explanation
Indices: 51096755--51096833 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
51096745 TTGCATTCAC
*
51096755 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
* * * *
51096786 ATTTTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
51096817 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
51096834 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:51100002 original size:2 final size:2
Alignment explanation
Indices: 51099995--51100039 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
51099985 AGGCATGCAC
* * * *
51099995 TA TA TA TA CA TA TA TA TA TA GA TA TA TG TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51100037 TA T
1 TA T
51100040 TTATGCCTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (2 bp):
TA
Found at i:51100831 original size:41 final size:39
Alignment explanation
Indices: 51100738--51100883 Score: 238
Period size: 39 Copynumber: 3.7 Consensus size: 39
51100728 TGTGTAAGAT
*
51100738 TTATATCCGGGCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
51100777 TTATATCAGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCT-G-GTG
51100818 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
51100857 TTATATCCGGGCTTAGTCTCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
51100884 ATTGTGTTGG
Statistics
Matches: 100, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
39 61 0.61
40 2 0.02
41 37 0.37
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:51105165 original size:38 final size:38
Alignment explanation
Indices: 51105121--51105305 Score: 147
Period size: 38 Copynumber: 4.9 Consensus size: 38
51105111 AATAGAAGCA
* * *
51105121 TAATGTTATTCGGGCTATGTGCCTAGCAGGCTTCGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * *
51105159 CAATGTTATTC-GAGCTCTATGCCTAGTAGGCTTTGTAC
1 TAATGTTATTCAG-GCTCTATGCCTAGCAGGCTTCGTGC
** ** *
51105197 TGGTGTTATTCAGGCTCTATGCCTAGTTGGCTTTGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * * *
51105235 TAGTGTTATTCAGACTCTGTGCCTAACAGGATTCGTGC
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
* * * * * *
51105273 TAGTGTTTTTCAAGCTCTGTGTCTAGTAGGCTT
1 TAATGTTATTCAGGCTCTATGCCTAGCAGGCTT
51105306 TGTGTCGGTG
Statistics
Matches: 119, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 117 0.98
39 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.38
Consensus pattern (38 bp):
TAATGTTATTCAGGCTCTATGCCTAGCAGGCTTCGTGC
Found at i:51105258 original size:76 final size:76
Alignment explanation
Indices: 51105124--51105309 Score: 194
Period size: 76 Copynumber: 2.4 Consensus size: 76
51105114 AGAAGCATAA
* * * * **
51105124 TGTTATTCGGGCTATGTGCCTAGCAGGCTTCGTGCCAATGTTATTCGAGCTCTATGCCTAGTAGG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAGCTCTATGCCTAACAGG
* * *
51105189 CTTTGTACTGG
66 ATTCGTACTAG
* * * * *
51105200 TGTTATTCAGGCTCTATGCCTAGTTGGCTTTGTGCTAGTGTTATTC-AGACTCTGTGCCTAACAG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAG-CTCTATGCCTAACAG
*
51105264 GATTCGTGCTAG
65 GATTCGTACTAG
* * *
51105276 TGTTTTTCAAGCTCTGTGTCTAGTAGGCTTTGTG
1 TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTG
51105310 TCGGTGTTAT
Statistics
Matches: 89, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
75 2 0.02
76 87 0.98
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.39
Consensus pattern (76 bp):
TGTTATTCAGGCTCTGTGCCTAGTAGGCTTTGTGCCAATGTTATTCGAGCTCTATGCCTAACAGG
ATTCGTACTAG
Found at i:51105317 original size:38 final size:38
Alignment explanation
Indices: 51105140--51105309 Score: 171
Period size: 38 Copynumber: 4.5 Consensus size: 38
51105130 TCGGGCTATG
* * * * *
51105140 TGCCTAGCAGGCTTCGTGCCAATGTTATTCGAGCTCTA
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
* * *
51105178 TGCCTAGTAGGCTTTGTACTGGTGTTATTCAGGCTCTA
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
* *
51105216 TGCCTAGTTGGCTTTGTGCTAGTGTTATTC-AGACTCTG
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAG-CTCTA
** * * * *
51105254 TGCCTAACAGGATTCGTGCTAGTGTTTTTCAAGCTCTG
1 TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
*
51105292 TGTCTAGTAGGCTTTGTG
1 TGCCTAGTAGGCTTTGTG
51105310 TCGGTGTTAT
Statistics
Matches: 106, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
37 1 0.01
38 103 0.97
39 2 0.02
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.38
Consensus pattern (38 bp):
TGCCTAGTAGGCTTTGTGCTAGTGTTATTCAAGCTCTA
Found at i:51107156 original size:66 final size:66
Alignment explanation
Indices: 51107077--51107211 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
51107067 TTGACATAAC
51107077 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
1 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
51107142 T
66 T
* * * *
51107143 TTATTGAGATCTCTTATTTTCATTATTTTAATCTTCAGTTCAGGTACCTAGATGTCTTCTGGAGT
1 TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
51107208 T
66 T
51107209 TTA
1 TTA
51107212 CTTATTAGTT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.48
Consensus pattern (66 bp):
TTATTGACATCTCTAATTTTCATTATTTTAATCTTCAGTTCAAGTACCTAAATGTCTTCTGGAGT
T
Found at i:51109799 original size:27 final size:27
Alignment explanation
Indices: 51109782--51109905 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
51109772 ATATTAAGTC
51109782 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
51109809 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
51109837 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
51109864 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
51109891 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51109906 GCACAATTTA
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
27 66 0.72
28 26 0.28
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:51109866 original size:55 final size:54
Alignment explanation
Indices: 51109782--51109905 Score: 194
Period size: 55 Copynumber: 2.3 Consensus size: 54
51109772 ATATTAAGTC
* *
51109782 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATC-AACT
* * *
51109837 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
51109891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51109906 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
54 18 0.28
55 46 0.72
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:51117860 original size:28 final size:27
Alignment explanation
Indices: 51117797--51117948 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
51117787 ATATTAAGTC
* * *
51117797 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
51117824 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
51117852 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
51117879 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
51117907 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
51117934 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51117949 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:51117881 original size:55 final size:55
Alignment explanation
Indices: 51117797--51117948 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
51117787 ATATTAAGTC
* * *
51117797 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51117852 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
51117907 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
51117949 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:51120371 original size:40 final size:40
Alignment explanation
Indices: 51120285--51120371 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 40
51120275 GGCGTTTGAA
* *
51120285 TAAAAAATGCCGCTAAAGAACGAGCATTAGCGGTGCTTTT
1 TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
** *
51120325 CGAAAAATGCCACTAAAGAATGAGCATTAGCGGCGCTTTT
1 TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
51120365 TAAAAAA
1 TAAAAAA
51120372 CATCGCTATA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (40 bp):
TAAAAAATGCCACTAAAGAACGAGCATTAGCGGCGCTTTT
Found at i:51120748 original size:53 final size:53
Alignment explanation
Indices: 51120670--51120779 Score: 157
Period size: 53 Copynumber: 2.1 Consensus size: 53
51120660 CGGCGCTTTT
* * * *
51120670 TTTTTAAAACGCCGCAAAAGAATTTTGTAAAACACCGTCATTTTGTATTGAGC
1 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
* * *
51120723 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACGCCATCGTTTTATATTGAGG
1 TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
51120776 TTTT
1 TTTT
51120780 TGTGGCTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (53 bp):
TTTTAAAAACGCCGCAAAAGAATTTTGCAAAACACCATCATTTTATATTGAGC
Found at i:51121215 original size:25 final size:25
Alignment explanation
Indices: 51121185--51121232 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
51121175 ACAGATTATG
*
51121185 GGTTT-AGGGATTATGGTTTAAGGGT
1 GGTTTAAGGG-TTAGGGTTTAAGGGT
*
51121210 GGTTTAAGGGTTGGGGTTTAAGG
1 GGTTTAAGGGTTAGGGTTTAAGG
51121233 TTTAGGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.38
Consensus pattern (25 bp):
GGTTTAAGGGTTAGGGTTTAAGGGT
Found at i:51121234 original size:21 final size:22
Alignment explanation
Indices: 51121210--51121282 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 22
51121200 GTTTAAGGGT
51121210 GGTTTAAGGGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGGTTTAA
51121231 GGTTT-AGGTGTTAGGGG-TTAA
1 GGTTTAAGG-GTTAGGGGTTTAA
* * * *
51121252 GGGTTAAGGGTTAAGGGTTCAT
1 GGTTTAAGGGTTAGGGGTTTAA
51121274 GGTTTAAGG
1 GGTTTAAGG
51121283 TTTATGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
20 3 0.07
21 23 0.53
22 17 0.40
ACGTcount: A:0.21, C:0.01, G:0.42, T:0.36
Consensus pattern (22 bp):
GGTTTAAGGGTTAGGGGTTTAA
Found at i:51121282 original size:15 final size:14
Alignment explanation
Indices: 51121213--51121270 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
51121203 TAAGGGTGGT
*
51121213 TTAAGGGTT-GGGG
1 TTAAGGGTTAAGGG
*
51121226 TTTAA-GGTTTAGGTG
1 -TTAAGGGTTAAGG-G
*
51121241 TTAGGGGTTAAGGG
1 TTAAGGGTTAAGGG
51121255 TTAAGGGTTAAGGG
1 TTAAGGGTTAAGGG
51121269 TT
1 TT
51121271 CATGGTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
13 4 0.11
14 25 0.68
15 8 0.22
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAAGGG
Found at i:51121328 original size:7 final size:7
Alignment explanation
Indices: 51121210--51121330 Score: 50
Period size: 7 Copynumber: 17.0 Consensus size: 7
51121200 GTTTAAGGGT
51121210 GGTTTAAG
1 GGTTT-AG
*
51121218 GG-TTGG
1 GGTTTAG
*
51121224 GGTTTAA
1 GGTTTAG
51121231 GGTTTA-
1 GGTTTAG
51121237 GGTGTTAGG
1 GGT-TTA-G
*
51121246 GGTTAAG
1 GGTTTAG
*
51121253 GGTTAAG
1 GGTTTAG
*
51121260 GGTTAAG
1 GGTTTAG
* *
51121267 GGTTCAT
1 GGTTTAG
*
51121274 GGTTTAA
1 GGTTTAG
51121281 GGTTTA-
1 GGTTTAG
* *
51121287 TGTTTTG
1 GGTTTAG
*
51121294 TGTTTTAG
1 -GGTTTAG
*
51121302 GGATTAG
1 GGTTTAG
*
51121309 GGATTAAG
1 GG-TTTAG
*
51121317 AGTTTAG
1 GGTTTAG
51121324 GGTTTAG
1 GGTTTAG
51121331 ATTAATTAGT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
6 10 0.12
7 61 0.71
8 12 0.14
9 3 0.03
ACGTcount: A:0.21, C:0.01, G:0.38, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:51121497 original size:22 final size:21
Alignment explanation
Indices: 51121472--51121521 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
51121462 GAGTTACTAT
*
51121472 TTTAAGGTTTATGAATTATGGG
1 TTTAAGGATTATGAATTAT-GG
* **
51121494 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGAATTATGG
51121515 TTTAAGG
1 TTTAAGG
51121522 GTTGGGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGAATTATGG
Found at i:51121530 original size:14 final size:15
Alignment explanation
Indices: 51121513--51121559 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
51121503 TATGGTTTAT
51121513 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
51121527 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
*
51121542 GG-TTAGGGGTTAGG
1 GGTTTAAGGGTTAGG
51121556 GGTT
1 GGTT
51121560 AAGTGCTAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 23 0.82
15 5 0.18
ACGTcount: A:0.15, C:0.02, G:0.49, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:51122092 original size:8 final size:8
Alignment explanation
Indices: 51122079--51122126 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
51122069 TTTTTCAAAA
51122079 AAAAATTT
1 AAAAATTT
51122087 AAAAA-TT
1 AAAAATTT
51122094 AAAAA-TT
1 AAAAATTT
*
51122101 AAAAATTA
1 AAAAATTT
* *
51122109 AAAAACTA
1 AAAAATTT
51122117 AAAAATTT
1 AAAAATTT
51122125 AA
1 AA
51122127 TATTTAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 14 0.40
8 21 0.60
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AAAAATTT
Found at i:51122119 original size:14 final size:14
Alignment explanation
Indices: 51122086--51122120 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
51122076 AAAAAAAATT
*
51122086 TAAAAATTAAAAAT
1 TAAAAATTAAAAAC
51122100 TAAAAATTAAAAAAC
1 TAAAAATT-AAAAAC
51122115 TAAAAA
1 TAAAAA
51122121 ATTTAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAAAATTAAAAAC
Found at i:51122120 original size:7 final size:7
Alignment explanation
Indices: 51122079--51122112 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
51122069 TTTTTCAAAA
51122079 AAAAATTT
1 AAAAA-TT
51122087 AAAAATT
1 AAAAATT
51122094 AAAAATT
1 AAAAATT
51122101 AAAAATT
1 AAAAATT
51122108 AAAAA
1 AAAAA
51122113 ACTAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.81
8 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAAATT
Found at i:51122131 original size:7 final size:7
Alignment explanation
Indices: 51122121--51122145 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51122111 AAACTAAAAA
51122121 ATTTAAT
1 ATTTAAT
51122128 ATTTAAT
1 ATTTAAT
51122135 ATTTAAT
1 ATTTAAT
51122142 ATTT
1 ATTT
51122146 TAGTCTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:51122392 original size:41 final size:39
Alignment explanation
Indices: 51122272--51122394 Score: 113
Period size: 41 Copynumber: 3.1 Consensus size: 39
51122262 AAAAAAAATT
* * * * *
51122272 AAAATTAAGCAATAGTGACGTTTTCTGAAAACGCCACAA
1 AAAATTAAGCTATAGTGGCTTTTTGTGAAAACGCCGCAA
* * **
51122311 AAAGTTAAGCTATAGTAGCGTTTTTG-GAATAAACAACGCAA
1 AAAATTAAGCTATAGTGGC-TTTTTGTG-A-AAACGCCGCAA
51122352 AAAATTAAGCTATAGTGGCATTTTTGTTGAAAACGCCGCAA
1 AAAATTAAGCTATAGTGGC-TTTTTG-TGAAAACGCCGCAA
51122393 AA
1 AA
51122395 GACATTACTT
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
39 16 0.25
40 5 0.08
41 42 0.65
42 1 0.02
43 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (39 bp):
AAAATTAAGCTATAGTGGCTTTTTGTGAAAACGCCGCAA
Found at i:51125905 original size:43 final size:43
Alignment explanation
Indices: 51125858--51126011 Score: 193
Period size: 43 Copynumber: 3.6 Consensus size: 43
51125848 GAAAAAGCAT
*
51125858 CGCTAAAGGTCATGGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
1 CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
*
51125901 CGCTAAAGG-CTATAGTCTTTAGCGGCGTTTGCGGGAAAAGCGC
1 CGCTAAAGGTC-ATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
* ** * ** * *
51125944 CGCTAAAGGTCATGGTCTTTAGTAGCATTTTTGAGAAAAGTGC
1 CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
*
51125987 CACTAAAGGTCATAGTCTTTAGCGG
1 CGCTAAAGGTCATAGTCTTTAGCGG
51126012 TATTTTTTTA
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 93 0.98
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
CGCTAAAGGTCATAGTCTTTAGCGGCGTTTCCGGGAAAAGCGC
Found at i:51125965 original size:86 final size:86
Alignment explanation
Indices: 51125791--51126011 Score: 238
Period size: 86 Copynumber: 2.6 Consensus size: 86
51125781 AAAGTTATAT
* * *
51125791 TCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTAT--TC--TA-TGGAGTTTGTAGAA
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGG-CTATAGTCTTTAGCGGAGTTTGCAGAA
*
51125851 AAAGCATCGCTAAAGGTCATGG
65 AAAGCACCGCTAAAGGTCATGG
* * * * *
51125873 TCTTTAGCGGCGTTTCCGGGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGCGTTTGCGGGAA
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGAGTTTGCAGAAA
*
51125938 AAGCGCCGCTAAAGGTCATGG
66 AAGCACCGCTAAAGGTCATGG
** * * * *
51125959 TCTTTAGTAGCATTTTTGAGAAAAGTGCCACTAAAGG-TCATAGTCTTTAGCGG
1 TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCT-ATAGTCTTTAGCGG
51126012 TATTTTTTTA
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
81 4 0.03
82 34 0.30
83 2 0.02
85 3 0.03
86 72 0.63
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (86 bp):
TCTTTAGCGGCGTTTCTGAGAAAAGCGCCGCTAAAGGCTATAGTCTTTAGCGGAGTTTGCAGAAA
AAGCACCGCTAAAGGTCATGG
Found at i:51127348 original size:41 final size:41
Alignment explanation
Indices: 51127302--51127384 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
51127292 TAAAAAATAC
51127302 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
1 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
51127343 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
1 TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
51127384 T
1 T
51127385 CTTATAGCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.20
Consensus pattern (41 bp):
TTTGAAAAAGTAATGCTAAACAAAGGATAAAAGACAATAGA
Found at i:51127857 original size:8 final size:8
Alignment explanation
Indices: 51127839--51127867 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
51127829 ATCATTCATA
51127839 TAAAA-TT
1 TAAAATTT
51127846 TAAAATTT
1 TAAAATTT
51127854 TAAAATTT
1 TAAAATTT
51127862 TAAAAT
1 TAAAAT
51127868 CCAAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 5 0.24
8 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (8 bp):
TAAAATTT
Found at i:51138404 original size:15 final size:15
Alignment explanation
Indices: 51138386--51138419 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51138376 GTGACTTGTA
51138386 AAAGGGTGAAAACTG
1 AAAGGGTGAAAACTG
**
51138401 AAAGTTTGAAAACTG
1 AAAGGGTGAAAACTG
51138416 AAAG
1 AAAG
51138420 TTTTAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.26, T:0.18
Consensus pattern (15 bp):
AAAGGGTGAAAACTG
Found at i:51138420 original size:15 final size:15
Alignment explanation
Indices: 51138392--51138422 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51138382 TGTAAAAGGG
51138392 TGAAAACTGAAAGTT
1 TGAAAACTGAAAGTT
51138407 TGAAAACTGAAAGTT
1 TGAAAACTGAAAGTT
51138422 T
1 T
51138423 TAAAGGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (15 bp):
TGAAAACTGAAAGTT
Found at i:51147809 original size:20 final size:20
Alignment explanation
Indices: 51147780--51147824 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51147770 AGCACATATA
* *
51147780 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
51147800 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
51147820 TTCAT
1 TTCAT
51147825 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:51157257 original size:19 final size:19
Alignment explanation
Indices: 51157233--51157276 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
51157223 TCATAGCACC
51157233 AAATCACATATTCATGAAG
1 AAATCACATATTCATGAAG
51157252 AAATCACATATTCATGAAG
1 AAATCACATATTCATGAAG
51157271 AAATCA
1 AAATCA
51157277 AAGCATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.25
Consensus pattern (19 bp):
AAATCACATATTCATGAAG
Found at i:51161985 original size:16 final size:15
Alignment explanation
Indices: 51161952--51161991 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
51161942 GTTACTGTTG
*
51161952 TTTTTTTTTCTTTCC
1 TTTTTTTTTATTTCC
*
51161967 TTTTTTATTTATTTTC
1 TTTTTT-TTTATTTCC
51161983 TTTTTTTTT
1 TTTTTTTTT
51161992 TCAAATCTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTATTTCC
Found at i:51162671 original size:3 final size:3
Alignment explanation
Indices: 51162652--51162766 Score: 83
Period size: 3 Copynumber: 39.0 Consensus size: 3
51162642 TTAGTTAATC
* * * * *
51162652 TTA TTA TTT TTA CTA TTA TTA TTA TTA TAA ATA -TA TTA TTA TTC TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * **
51162699 TTA TTA TTA CTA TTA GTA TTA TTT TTA TTA CCA TTA TCT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
51162744 CTA TTA CTA CTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
51162767 GTTTTTACCT
Statistics
Matches: 85, Mismatches: 23, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
2 5 0.06
3 79 0.93
4 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:51162915 original size:15 final size:15
Alignment explanation
Indices: 51162895--51162930 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
51162885 TTTATTACTT
51162895 ATATTATTACCATTA
1 ATATTATTACCATTA
*
51162910 ATATTATTATCATTA
1 ATATTATTACCATTA
*
51162925 CTATTA
1 ATATTA
51162931 CTATCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTATTACCATTA
Found at i:51162935 original size:15 final size:15
Alignment explanation
Indices: 51162895--51162938 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51162885 TTTATTACTT
* *
51162895 ATATTATTACCATTA
1 ATATTACTATCATTA
*
51162910 ATATTATTATCATTA
1 ATATTACTATCATTA
*
51162925 CTATTACTATCATT
1 ATATTACTATCATT
51162939 TTTTAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTACTATCATTA
Found at i:51163051 original size:31 final size:29
Alignment explanation
Indices: 51163002--51163065 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
51162992 TTTCAATATT
*
51163002 TTTTAGCTTATTTATTATTTCCTTT-TTTA
1 TTTTAGCTTATTTATTA-TTCATTTATTTA
*
51163031 TTTTAGCTTATTCGTTTTATTCATTTATTTA
1 TTTTAGCTTATT--TATTATTCATTTATTTA
51163062 TTTT
1 TTTT
51163066 TTGCTCTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.40
30 6 0.20
31 12 0.40
ACGTcount: A:0.17, C:0.09, G:0.05, T:0.69
Consensus pattern (29 bp):
TTTTAGCTTATTTATTATTCATTTATTTA
Found at i:51174940 original size:45 final size:44
Alignment explanation
Indices: 51174884--51175600 Score: 399
Period size: 45 Copynumber: 15.8 Consensus size: 44
51174874 AAGTCACTAG
*
51174884 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * * *
51174929 TCTTATTTCCCTGAAGTTGTAATGGA-TAGATTGAAGCTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-A
* * *
51174979 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-AT-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * *
51175020 CCTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * *
51175065 TCTTAAT-TCCCTGAAGTTACAGTGGAACAGATTGAAGCTATAAATCTCAGA
1 TCTT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A---CAAA
** * ** * *
51175116 TCTTATCTTTCTGAAGTTGCAATAAAGCAGA-TCAA-A-ACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * * * *
51175157 CCTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAG-TCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAA
*
51175201 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* **
51175246 TCTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGTTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-CA-A-A
* * * *
51175297 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCAA-A-ACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * * * *
51175338 CCTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAG-TCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACAAA
* * * *
51175382 TTTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * * *
51175427 TCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------AT--ACAAA
* * *
51175479 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
* * * * **
51175520 -CATTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGTGAA
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CAAA
* * *
51175565 TCTTATTTCCCTAAAGTTGCA-TGGAACAGATTGAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
51175601 CTATAAATAA
Statistics
Matches: 506, Mismatches: 115, Indels: 103
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.00
41 107 0.21
42 14 0.03
43 7 0.01
44 88 0.17
45 144 0.28
46 5 0.01
47 8 0.02
48 3 0.01
49 5 0.01
50 34 0.07
51 60 0.12
52 29 0.06
53 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACAAA
Found at i:51175162 original size:137 final size:136
Alignment explanation
Indices: 51174885--51175186 Score: 460
Period size: 137 Copynumber: 2.2 Consensus size: 136
51174875 AGTCACTAGT
* **
51174885 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
* * *
51174950 ATGGATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAAA
66 ATGGACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAAA
*
51175015 TCAAAC
131 ACAAAC
*
51175021 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
* * *
51175086 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 ATGG-ACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
51175151 AACAGAC
130 AACAAAC
* * *
51175158 CTTATCTCCCTAAAGTTACGGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
51175187 GTTGAAGTCA
Statistics
Matches: 149, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
136 64 0.43
137 85 0.57
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (136 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
ATGGACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAAA
ACAAAC
Found at i:51175193 original size:137 final size:137
Alignment explanation
Indices: 51174885--51175237 Score: 471
Period size: 136 Copynumber: 2.6 Consensus size: 137
51174875 AGTCACTAGT
* *
51174885 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
* * * *
51174950 ATGG-ATAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
51175014 ATCAAAC
131 AACAAAC
* *
51175021 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
* *
51175086 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
*
51175151 AACAGAC
131 AACAAAC
* * * ** * *
51175158 CTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAG-TCA-CTAGTCTT-ATCTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAATCTTAAT-TCCCTGAAGTTG
* *
51175220 CAGTGGAGCAGACTGAAG
64 CAGTGGAACAGATTGAAG
51175238 ATAGCAAATC
Statistics
Matches: 191, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
135 2 0.01
136 98 0.51
137 91 0.48
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (137 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAATAAAGCAGATCAA
AACAAAC
Done.