Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 155 of 320
Found at i:51175209 original size:181 final size:181
Alignment explanation
Indices: 51175021--51175548 Score: 840
Period size: 181 Copynumber: 2.9 Consensus size: 181
51175011 CAAATCAAAC
* * *
51175021 CTTATCTCCCTGAAGTTGCATTGGAGCAGACTGAAGATAGCAAATCTTAATTCCCTGAAGTTACA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
* * * *
51175086 GTGGAACAGATTGAAGCTATAAATCTCAGATCTTATCTTTCTGAAGTTGCAATAAAGCAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
* * * *
51175151 AACAGACCTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAGTCACTAGT
131 AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
51175202 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
* * *
51175267 GTGGAATAGATTGAAGTTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCAA
66 GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
* * *
51175332 AACAAACCTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACTAGT
131 AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
* * * *
51175383 TTTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
*
51175448 GTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
66 GTGGAACAGATTGAAGCTATAAAT-CACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCA
*
51175513 AAACAAACATTATCTCCCTGAAGTTGCAGTGGAGCA
130 AAACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA
51175549 CACTAAAAAT
Statistics
Matches: 317, Mismatches: 29, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
181 247 0.78
182 70 0.22
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (181 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
AACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTCACTAGT
Found at i:51175281 original size:89 final size:89
Alignment explanation
Indices: 51175158--51175545 Score: 328
Period size: 89 Copynumber: 4.3 Consensus size: 89
51175148 CAAAACAGAC
* * * * * * *
51175158 CTTATCTCCCTAAAGTTACGGTGGAGCAGGTTGAAGTCACTAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
51175223 TGGAGCAGACTGAAGATAGCAAAT
66 TGGAGCAGACTGAAGATAGCAAAT
*
51175247 CTTATTTCCCTGAAGTTGCAGTGGAATAGATTGAAGTTATAAATCAC-AGATCTTATCTCTCTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG-------TCACTAG-TCTTATCTCTCTGA
* * * *
51175311 AGTTGCAGTAGAGTAGA-TCAA-A-A-CAAAC
58 AGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
* * * * * *
51175339 CTTATATCCTTGAAGTTGTAGTGGAGCAGGTTGAAGTCACTAGTTTTATCTCTCTGAAGTTGCAG
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
*
51175404 TGAAGCAGACTGAAGATAGCAAAT
66 TGGAGCAGACTGAAGATAGCAAAT
* * *
51175428 CTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGA
1 CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAG---TCACT----AG-TCTTATCTCTCTGA
* *
51175493 AGTTGCAGTAGAGCAGA-TCAA-A-A-CAAA-
58 AGTTGCAGTGGAGCAGACTGAAGATAGCAAAT
*
51175520 CATTATCTCCCTGAAGTTGCAGTGGA
1 C-TTATTTCCCTGAAGTTGCAGTGGA
51175546 GCACACTAAA
Statistics
Matches: 239, Mismatches: 38, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
85 31 0.13
86 5 0.02
87 1 0.00
88 1 0.00
89 63 0.26
92 38 0.16
93 27 0.11
94 2 0.01
95 6 0.03
96 37 0.15
97 28 0.12
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (89 bp):
CTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGTCACTAGTCTTATCTCTCTGAAGTTGCAG
TGGAGCAGACTGAAGATAGCAAAT
Found at i:51175496 original size:52 final size:49
Alignment explanation
Indices: 51175425--51175647 Score: 148
Period size: 52 Copynumber: 4.7 Consensus size: 49
51175415 GAAGATAGCA
* *
51175425 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA-CTATAAATAAAC
* * * *
51175476 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T--C-A-AAACAAAC
1 A-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
* * * ***
51175521 -A--TTATCTCCCTGAAGTTGCAGTGGAGC--A--CACTAAAAATAGTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
* *
51175563 AATCTTATTTCCCTAAAGTTGCA-TGGAACAGATTGAAGCTATAAATAAAC
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA-CTATAAATAAAC
** *
51175613 AGATCTTATCTTTCTAAAGTTGCAGTAGAGCAGAT
1 A-ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAT
51175648 CATAGCAAAC
Statistics
Matches: 131, Mismatches: 25, Indels: 31
0.70 0.13 0.17
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 25 0.19
42 4 0.03
43 2 0.02
44 5 0.04
45 24 0.18
46 2 0.02
47 1 0.01
49 1 0.01
50 9 0.07
51 21 0.16
52 35 0.27
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (49 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAACTATAAATAAAC
Found at i:51175634 original size:137 final size:138
Alignment explanation
Indices: 51175384--51175728 Score: 478
Period size: 137 Copynumber: 2.5 Consensus size: 138
51175374 GTCACTAGTT
* * * * *
51175384 TTATCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCAAATCTTATTTCCCTAAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
*
51175449 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAA
66 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
51175514 AACAAACA
131 AACAAACA
**
51175522 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGTGAATCTTATTTCCCTAAAGTTGCA-
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
* *
51175586 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTTTCTAAAGTTGCAGTAGAGCAGATCAT
66 TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
* *
51175651 AGCAAACC
131 AACAAACA
* * ** * * * * *
51175659 TTATCTCCCTGAAGTTGTAGTGGAGTAGGCTAAAAACTA-CAAACCTTATCTCTCTGAAGTTGCG
1 TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAA-TAGCAAATCTTATTTCCCTAAAGTTGCA
51175723 GTGGAA
65 GTGGAA
51175729 TGGATCGAAG
Statistics
Matches: 182, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
137 118 0.65
138 64 0.35
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (138 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCACACTAAAAATAGCAAATCTTATTTCCCTAAAGTTGCAG
TGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCAA
AACAAACA
Found at i:51176273 original size:23 final size:21
Alignment explanation
Indices: 51176247--51176289 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
51176237 TAAATTTTTG
*
51176247 GGGACATTGAATACAATCAAAAA
1 GGGACATTCAA-AC-ATCAAAAA
*
51176270 GGGAGATTCAAACATCAAAA
1 GGGACATTCAAACATCAAAA
51176290 TAGCAAATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (21 bp):
GGGACATTCAAACATCAAAAA
Found at i:51177060 original size:3 final size:3
Alignment explanation
Indices: 51177041--51177194 Score: 113
Period size: 3 Copynumber: 52.7 Consensus size: 3
51177031 TTAGTTAATC
* * * *
51177041 TTA TTA TTT TTA CTA TTA TTA TTA TTA TT- TTA -AA TATA TTC TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * * * *
51177085 TTC TTA TTC TTA TTA TTA CTA TTA GTA TTA TTT TTA TAA CTA TTA TCT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * *
51177133 TTA TTA CTA TTA CTA CTA TTA TTA TTA -TA TTA TTA TTA CTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51177179 TTA TTA TTA -TA TTA TT
1 TTA TTA TTA TTA TTA TT
51177195 TTTTACCTAT
Statistics
Matches: 115, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
2 10 0.09
3 102 0.89
4 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:51177831 original size:54 final size:54
Alignment explanation
Indices: 51177749--51177858 Score: 193
Period size: 54 Copynumber: 2.0 Consensus size: 54
51177739 TTAAAATCGC
**
51177749 AATACGAGTTTTGAATAAAATGCTTACTCTCTGCGATTCGAGGTGTTATGCCCT
1 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
*
51177803 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTGTGCCCT
1 AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
51177857 AA
1 AA
51177859 CTTGCTAGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (54 bp):
AATACGAGTTTTGAATAAAATGCTTACTCTCTAAGATTCGAGGTGTTATGCCCT
Found at i:51191246 original size:93 final size:93
Alignment explanation
Indices: 51191134--51191305 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51191124 CGCCCATAAG
* *
51191134 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51191199 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
51191227 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51191292 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51191306 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51191302 original size:46 final size:46
Alignment explanation
Indices: 51191127--51191302 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51191117 TGAAACCCGC
* * *
51191127 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51191173 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51191223 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51191266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51191303 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51198348 original size:23 final size:23
Alignment explanation
Indices: 51198293--51198348 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
51198283 GTAGGGGACA
*
51198293 CGGGCGTGTACACTGCCTCTACT
1 CGGGCGTGTGCACTGCCTCTACT
*
51198316 CGAGCGTGTGCACTGCCTCTACT
1 CGGGCGTGTGCACTGCCTCTACT
51198339 CGGGCGTGTG
1 CGGGCGTGTG
51198349 AGGCTTAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.11, C:0.32, G:0.32, T:0.25
Consensus pattern (23 bp):
CGGGCGTGTGCACTGCCTCTACT
Found at i:51204213 original size:15 final size:15
Alignment explanation
Indices: 51204193--51204222 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
51204183 CTAAATCGTA
51204193 AATAATGTGAAAGGT
1 AATAATGTGAAAGGT
51204208 AATAATGTGAAAGGT
1 AATAATGTGAAAGGT
51204223 TAGGGGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (15 bp):
AATAATGTGAAAGGT
Found at i:51204845 original size:60 final size:60
Alignment explanation
Indices: 51204752--51204891 Score: 262
Period size: 60 Copynumber: 2.3 Consensus size: 60
51204742 TAGGGTTTGA
* *
51204752 ATTTAGCCTGGACTGATAATTTAGATCCGAGCTCATTATAGCTGTTTTTCACTACAAGGG
1 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
51204812 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
1 ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
51204872 ATTTAGCCTGGACTGGTAAT
1 ATTTAGCCTGGACTGGTAAT
51204892 CCCACCGTAA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
60 78 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (60 bp):
ATTTAGCCTGGACTGGTAATTTAGATCCGAGCTCATTATAGCTGTTTGTCACTACAAGGG
Found at i:51210035 original size:48 final size:48
Alignment explanation
Indices: 51209961--51210290 Score: 231
Period size: 48 Copynumber: 6.9 Consensus size: 48
51209951 GGTGAATTGT
* * *
51209961 CGATGCCATGTTCCA-AAATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* ** *** * * *
51210008 CGATGCCATGGCCCAGACATGGTCTTACACTAACTCTTGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* * * * *
51210056 CGATGGCATGTCCCAGA-AGTGGTCTTAAACTGGCCCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACA-TGGTCTTACACTGGCTCACAT-ATCGAGGC
* * * * * * * *
51210104 TGATGCCATGTCCTAGACATGGTCTTATACTAGCGCACAAATCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* *
51210152 CGATGCCATGTCCCAGACAAGGTCTTACACTAGCTCTCACAATATC-A--C
1 CGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCAC-ATATCGAGGC
* * * * * * *
51210200 CAATGCCATGTTCCAAACTTGGTCTTACACTGGCTCTCATTTCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
* * * *
51210248 CGACGCCATGTCCCAGACATGGTCTTACATTGACACACATATC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC
51210291 ACCCAAATGT
Statistics
Matches: 211, Mismatches: 61, Indels: 21
0.72 0.21 0.07
Matches are distributed among these distances:
45 4 0.02
46 4 0.02
47 17 0.08
48 175 0.83
49 2 0.01
50 5 0.02
51 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:51210512 original size:12 final size:12
Alignment explanation
Indices: 51210495--51210521 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51210485 TTGTATTTAG
51210495 TCATCATATTAA
1 TCATCATATTAA
51210507 TCATCATATTAA
1 TCATCATATTAA
51210519 TCA
1 TCA
51210522 ATGCATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (12 bp):
TCATCATATTAA
Found at i:51211950 original size:28 final size:28
Alignment explanation
Indices: 51211910--51211966 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
51211900 TAAAGCGTCC
51211910 TTCAAACAATAACAAATTACCTTAACTT
1 TTCAAACAATAACAAATTACCTTAACTT
51211938 TTCAAACAATAACAAATTACCTTAACTT
1 TTCAAACAATAACAAATTACCTTAACTT
51211966 T
1 T
51211967 CTCTTCGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (28 bp):
TTCAAACAATAACAAATTACCTTAACTT
Found at i:51213685 original size:28 final size:29
Alignment explanation
Indices: 51213652--51213752 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
51213642 TATAGTAAGT
* * *
51213652 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
51213680 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
51213709 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
51213738 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51213753 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:51225999 original size:28 final size:29
Alignment explanation
Indices: 51225964--51226064 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
51225954 TATAGTAAGT
* * *
51225964 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
* *
51225992 TCACACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
51226021 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
51226050 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51226065 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:51236201 original size:48 final size:48
Alignment explanation
Indices: 51236144--51236462 Score: 242
Period size: 48 Copynumber: 6.6 Consensus size: 48
51236134 AGGATGAATT
** * *
51236144 GCCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCACATGTCAAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* ** * * * * * * *
51236192 GTCGATGCCACATCCTAGACATGGCCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * * **
51236240 GCCAATGCCATATCCCAAACATGGTCTTACACTGGCTCTTATAACGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * ** * * *
51236288 GCCGATACCATGTCCCAGACATGGTTTTACACTAACGCACATATCAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* * * * * * **
51236336 GCTGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
* ** **
51236384 GCCAATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
** *
51236432 GCCGACACCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAAACATGGTCTTACA
51236463 TTGACACACA
Statistics
Matches: 200, Mismatches: 71, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
48 200 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCAAG
Found at i:51243824 original size:9 final size:9
Alignment explanation
Indices: 51243819--51243847 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
51243809 AAATAACAGC
51243819 CTTAACATG
1 CTTAACATG
51243828 CTTAACATG
1 CTTAACATG
51243837 CTTAACATG
1 CTTAACATG
51243846 CT
1 CT
51243848 CGTATACAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (9 bp):
CTTAACATG
Found at i:51256504 original size:13 final size:13
Alignment explanation
Indices: 51256488--51256512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51256478 TTAAATCAGT
51256488 TAATTAGTTTAAA
1 TAATTAGTTTAAA
51256501 TAATTAGTTTAA
1 TAATTAGTTTAA
51256513 TAAAAAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:51260796 original size:27 final size:27
Alignment explanation
Indices: 51260765--51260955 Score: 177
Period size: 27 Copynumber: 7.1 Consensus size: 27
51260755 GTCGTTAAAA
*
51260765 CCCCAATTTGTAAAATTACAAAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
51260792 CCCCAGTTTGTAAAATTATCAAAGTAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * * **
51260819 CCTCGATTTGTAAAATGATTAAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
51260846 CCTCAAGTTGTAAAATTACCGAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* **
51260873 CCTCAGA-TTACAAAATTACCAAAATAC
1 CCCCA-ATTTGTAAAATTACCAAAATAC
* * *
51260900 CCCCAGTTTGTAAAACTACCAAATTAC
1 CCCCAATTTGTAAAATTACCAAAATAC
* * *
51260927 CCCCGATTTGTAAAATTATCGAAATAC
1 CCCCAATTTGTAAAATTACCAAAATAC
51260954 CC
1 CC
51260956 TTGTAGTGTA
Statistics
Matches: 131, Mismatches: 31, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
27 130 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (27 bp):
CCCCAATTTGTAAAATTACCAAAATAC
Found at i:51260857 original size:54 final size:53
Alignment explanation
Indices: 51260770--51260955 Score: 205
Period size: 54 Copynumber: 3.5 Consensus size: 53
51260760 TAAAACCCCA
* *
51260770 ATTTGTAAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCG
1 ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAA-TACCCTCG
* ** *
51260824 ATTTGTAAAATGATTAAAATACCCTCAAG-TTGTAAAATTACCGAAATACCCTCAG
1 ATTTGTAAAATTACCAAAATACCC-CCAGTTTGTAAAATTACC-AAATACCCTC-G
** * *
51260879 A-TTACAAAATTACCAAAATACCCCCAGTTTGTAAAACTACCAAATTACCCCCG
1 ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAA-TACCCTCG
* *
51260932 ATTTGTAAAATTATCGAAATACCC
1 ATTTGTAAAATTACCAAAATACCC
51260956 TTGTAGTGTA
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
53 8 0.07
54 93 0.85
55 8 0.07
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (53 bp):
ATTTGTAAAATTACCAAAATACCCCCAGTTTGTAAAATTACCAAATACCCTCG
Found at i:51260910 original size:81 final size:80
Alignment explanation
Indices: 51260764--51260956 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 80
51260754 GGTCGTTAAA
** * * ** * * *
51260764 ACCCCAATTTGTAAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCGATTTG
1 ACCCCAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGATTTG
**
51260829 TAAAA-TGATTAAAAT
66 TAAAACT-ACCAAAAT
*
51260844 ACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCC-AGTT
1 ACCC-CAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGA-TT
*
51260908 TGTAAAACTACCAAATT
64 TGTAAAACTACCAAAAT
* *
51260925 ACCCCCGATTTGTAAAATTATCGAAATACCCT
1 A-CCCCAATTTGTAAAATTACCGAAATACCCT
51260957 TGTAGTGTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
80 5 0.05
81 84 0.90
82 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (80 bp):
ACCCCAATTTGTAAAATTACCGAAATACCCTCAGATTACAAAATTACCAAAATACCCCCGATTTG
TAAAACTACCAAAAT
Found at i:51260965 original size:27 final size:27
Alignment explanation
Indices: 51260935--51260988 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
51260925 ACCCCCGATT
*
51260935 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
51260962 TGTAAGATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
51260989 GGTTAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:51260966 original size:108 final size:108
Alignment explanation
Indices: 51260776--51260983 Score: 301
Period size: 108 Copynumber: 1.9 Consensus size: 108
51260766 CCCAATTTGT
* * * *
51260776 AAAATTACAAAAATACCCCCAGTTTGTAAAATTATCAAAGTACCCTCGATTTGTAAAATGATTAA
1 AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
51260841 AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
66 AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
* * * *
51260884 AAAATTACCAAAATACCCCCAGTTTGTAAAACTACCAAATTACCCCCGATTTGTAAAATTATCGA
1 AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
** *
51260949 AATACCCTTGTAG-TGTAAGATTACCGAAATACCCT
66 AATACCC-TCAAGTTGTAAAATTACCGAAATACCCT
51260984 TGTAGGGTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 85 0.97
109 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (108 bp):
AAAATTACAAAAATACCCCCAGTTTGTAAAACTACCAAAGTACCCCCGATTTGTAAAATGATCAA
AATACCCTCAAGTTGTAAAATTACCGAAATACCCTCAGATTAC
Found at i:51268025 original size:47 final size:47
Alignment explanation
Indices: 51267918--51268049 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 47
51267908 GTGCAAGCGA
* * * * * *
51267918 TACCTTGATTTGTCTACGGGCCATGGTATAAGTATTTTGGAGAAGTGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-CTTCGAGAAGAGT
* *
51267966 TACCTTAATTTGGCTATGGGTCATGGTATAGGTACTTCGAGATA-AGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCGAGA-AGAGT
* *
51268013 TACCTTGATTTGGATATAGGCCATGGTATAGGTACTT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTT
51268050 ATCGATTGAG
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
47 41 0.58
48 30 0.42
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTCGAGAAGAGT
Found at i:51276863 original size:34 final size:34
Alignment explanation
Indices: 51276837--51276901 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
51276827 TATTAGTTAG
*
51276837 GGCCATAGCCCATTACAGTATCAGTATCAGTGTA
1 GGCCATAGCCCATTACAGTAACAGTATCAGTGTA
* *
51276871 GGCCTTAGCCCATTACAGTAACAGTAACAGT
1 GGCCATAGCCCATTACAGTAACAGTATCAGT
51276902 AATACAATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (34 bp):
GGCCATAGCCCATTACAGTAACAGTATCAGTGTA
Found at i:51277276 original size:33 final size:33
Alignment explanation
Indices: 51277230--51277294 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
51277220 GGGGTCTAGG
*
51277230 TATACTTATCGACCCAATAGCAGGTCCACATTA
1 TATACTTACCGACCCAATAGCAGGTCCACATTA
* *
51277263 TATACTTGCCGACCCAATAGTAGGTCCACATT
1 TATACTTACCGACCCAATAGCAGGTCCACATT
51277295 CATCTCGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (33 bp):
TATACTTACCGACCCAATAGCAGGTCCACATTA
Found at i:51284581 original size:12 final size:13
Alignment explanation
Indices: 51284564--51284592 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51284554 GCAATTTAAA
51284564 TTTTATT-CTAAT
1 TTTTATTACTAAT
51284576 TTTTATTACTAAT
1 TTTTATTACTAAT
51284589 TTTT
1 TTTT
51284593 CTTTTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:51300048 original size:131 final size:131
Alignment explanation
Indices: 51299814--51300075 Score: 427
Period size: 131 Copynumber: 2.0 Consensus size: 131
51299804 GTAATGGAAA
* * * *
51299814 GTGTGAAGTACATTACAGCATCCACTGTGCCTTTGACTATGTTCAGTGATATTGTTAAACAACTT
1 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTTCAGTGACATTGTTAAACAACTT
* * * *
51299879 TAGTTGCCAAATAAGAGGTTGATTTTAGATTGTTGTACATGGTGGAATGCAACATATGCTATGTT
66 CAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTT
51299944 G
131 G
*
51299945 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTAT-TTCCAGTGACATTGTTAAGCAACT
1 GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTT-CAGTGACATTGTTAAACAACT
51300009 TCAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGT
65 TCAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGT
51300074 TG
130 TG
51300076 TCATGTGTAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
130 2 0.02
131 119 0.98
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (131 bp):
GTGTGAAGTACATCACAACATCCACTATGCCTTTGACTATGTTCAGTGACATTGTTAAACAACTT
CAATTGCCAAATAAGAGATTGATTTTAGATTGTTGTACACGGTGGAATGCAACATATGCTATGTT
G
Found at i:51304461 original size:46 final size:46
Alignment explanation
Indices: 51304411--51304586 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
51304401 TGATTGAGCA
* *
51304411 TCCGAAATCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
* ** * *
51304457 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAAATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAA--ATG
* *
51304502 CCTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
* *
51304550 -CTCGAGCTCGTTGAGTTGAGTCCGAGTGCACTTAGGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
51304587 GCGGGTTATA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 3 0.03
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
Found at i:51307612 original size:65 final size:65
Alignment explanation
Indices: 51307508--51307638 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
51307498 CCCCTAGGGT
* * *
51307508 TAAGGTTGACCTGAATGCATGTTTGACTGTTGCTATTTACTGCATGTCGTGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
51307573 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
51307638 T
1 T
51307639 GCATGGGACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:51318842 original size:26 final size:26
Alignment explanation
Indices: 51318794--51318844 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
51318784 CTCAAAATGG
* *
51318794 AACACTTAAAAAGAATTCCTAAAGAA
1 AACACTAAAAAAGAATCCCTAAAGAA
51318820 AACACTAAAAAAGAA-CCCATAAAGA
1 AACACTAAAAAAGAATCCC-TAAAGA
51318845 TTCAAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.61, C:0.18, G:0.08, T:0.14
Consensus pattern (26 bp):
AACACTAAAAAAGAATCCCTAAAGAA
Found at i:51319807 original size:108 final size:108
Alignment explanation
Indices: 51319618--51319832 Score: 331
Period size: 108 Copynumber: 2.0 Consensus size: 108
51319608 GCTTATGGTG
* * * * *
51319618 ATTGTAACAGCTCGATATCGGGCCTAGTTGGAACAATGGTTTCAGGACCACAAATCCGATGCAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
*
51319683 AAAATTTATTTTTATTATATTTTTATGGTCTACAATTTCACGA
66 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACGA
* * * * *
51319726 ATTGTAACAGCTCAATTTTGGGACTAGTCGAAACAGTGGTTTCGGGACCACAAATCCGACGTAAG
1 ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
51319791 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACG
66 AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACG
51319833 GAATGATTTC
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
108 96 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (108 bp):
ATTGTAACAGCTCAATATCGGGACTAGTCGAAACAATGGTTTCAGGACCACAAATCCGACGCAAG
AAAATTTATTTTTATTATATTTTTATCGTCTACAATTTCACGA
Found at i:51324143 original size:13 final size:13
Alignment explanation
Indices: 51324110--51324143 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51324100 ATTCCATTCA
*
51324110 GTTCCATCCTTTT
1 GTTCCATCCTTTC
51324123 GTTCCATCCTTTC
1 GTTCCATCCTTTC
*
51324136 GTTTCATC
1 GTTCCATC
51324144 ATAATCGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.32, G:0.09, T:0.50
Consensus pattern (13 bp):
GTTCCATCCTTTC
Found at i:51324518 original size:11 final size:11
Alignment explanation
Indices: 51324504--51324547 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
51324494 AAAAAAGTTC
51324504 AAAATTCAAAA
1 AAAATTCAAAA
**
51324515 AAAATTTGGAAA
1 AAAA-TTCAAAA
*
51324527 AAAATTCGAAA
1 AAAATTCAAAA
51324538 AAAATTCAAA
1 AAAATTCAAA
51324548 TTAGAACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (11 bp):
AAAATTCAAAA
Found at i:51330956 original size:28 final size:30
Alignment explanation
Indices: 51330891--51330959 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
51330881 ATGTGTCCCA
* *
51330891 GCCGTGTGTGTGACACGGTCAGGTTACACG
1 GCCGTGTGTGTCACACGGTCAAGTTACACG
* *
51330921 GCCGTGTGTGTCACACTGTCAAGTTACATG
1 GCCGTGTGTGTCACACGGTCAAGTTACACG
*
51330951 GCTGTGTGT
1 GCCGTGTGT
51330960 CCCCTGGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (30 bp):
GCCGTGTGTGTCACACGGTCAAGTTACACG
Found at i:51331081 original size:12 final size:12
Alignment explanation
Indices: 51331064--51331090 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51331054 GATAGGTTTG
51331064 ACACGGCCTAGC
1 ACACGGCCTAGC
51331076 ACACGGCCTAGC
1 ACACGGCCTAGC
51331088 ACA
1 ACA
51331091 AGGGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:51337748 original size:31 final size:31
Alignment explanation
Indices: 51337706--51337769 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
51337696 CCTTTTCATA
*
51337706 TTTCATTTTTCATAACACTGAGCCGAAGCCT
1 TTTCATATTTCATAACACTGAGCCGAAGCCT
** * *
51337737 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGAGCCGAAGCCT
51337768 TT
1 TT
51337770 AACTGTAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGAGCCGAAGCCT
Found at i:51338005 original size:24 final size:24
Alignment explanation
Indices: 51337953--51338118 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
51337943 GTTTTATCAT
*
51337953 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
51337978 ATAAGTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
51338002 ATAACTGGGGTATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
51338025 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
51338049 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
51338073 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
51338096 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51338119 TCACTTCCTC
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
23 42 0.34
24 72 0.58
25 11 0.09
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51338058 original size:71 final size:71
Alignment explanation
Indices: 51337953--51338118 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
51337943 GTTTTATCAT
* * * *
51337953 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGGGCAAAAGCCCTTTTTATAACTGGGGTATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
51338017 GCCCTTTA
64 GCCCTTTA
* * *
51338025 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
51338090 CCTTTA
66 CCTTTA
51338096 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51338119 TCACTTCCTC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 74 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:51338118 original size:47 final size:48
Alignment explanation
Indices: 51337953--51338118 Score: 221
Period size: 47 Copynumber: 3.5 Consensus size: 48
51337943 GTTTTATCAT
* * * *
51337953 ATAACTGGAGGCCT-AGCCTCTTTTAATAAGTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* * *
51338002 ATAACTGGGGTATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
*
51338049 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
51338096 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51338119 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 68 0.65
48 25 0.24
49 12 0.11
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:51339500 original size:27 final size:26
Alignment explanation
Indices: 51339441--51339514 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
51339431 CATATTCGTA
51339441 ATTTTACCATACAGGGGTATTAGGTC
1 ATTTTACCATACAGGGGTATTAGGTC
* *
51339467 ACTTTACCCTACAGGGGCT-TTACGGTC
1 ATTTTACCATACAGGGG-TATTA-GGTC
* *
51339494 TTTTTACC-TATTAGGGGTATT
1 ATTTTACCATA-CAGGGGTATT
51339515 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 21 0.54
27 18 0.46
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (26 bp):
ATTTTACCATACAGGGGTATTAGGTC
Found at i:51339606 original size:27 final size:27
Alignment explanation
Indices: 51339555--51339836 Score: 84
Period size: 27 Copynumber: 10.4 Consensus size: 27
51339545 GTAAATCTAC
*
51339555 AAACCAAGGGTATTTC-AGTAGTTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
51339582 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* * *
51339608 AGAAAGTCAAGGGTATTTATGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* * **
51339638 AAATC-AGTGGTATTT-TGGTAATTTTAC
1 AAACCAAG-GGTATTTCT-ATAATTTTGT
*** ** ***
51339665 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCTATAATTTTGT
* **
51339692 AAACC-AGTGGTATTT-TGGTAATTTTAC
1 AAACCAAG-GGTATTTCT-ATAATTTTGT
* **
51339719 AAACC-AGTGGTATTT-TGGTAATTTTAC
1 AAACCAAG-GGTATTTCT-ATAATTTTGT
*
51339746 AAACC-AGGGTATTT-TGGTAATTTTGT
1 AAACCAAGGGTATTTCT-ATAATTTTGT
51339772 AAACCAAGGGTA-TT-TAGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
* * *** * *
51339798 AAATCGAGGGTAAAACAATAATTCTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
51339825 AAATCAAGGGTA
1 AAACCAAGGGTA
51339837 AAATAGTAAT
Statistics
Matches: 215, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
26 50 0.23
27 136 0.63
28 10 0.05
29 18 0.08
30 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:51339728 original size:81 final size:80
Alignment explanation
Indices: 51339619--51339795 Score: 225
Period size: 81 Copynumber: 2.2 Consensus size: 80
51339609 GAAAGTCAAG
** * **
51339619 GGTATTTATGTAATTTTGTAAATCAGTGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTATGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTCGGT
51339684 AATTTCACAAACCAGT
65 AATTTCACAAACCAGT
*
51339700 GGTATTT-TGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGT
1 GGTATTTAT-GTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGTATTTCGGT
***
51339764 AATTTTGTAAACCAAG-
65 AATTTCACAAACC-AGT
51339780 GGTATTTA-GTAATTTT
1 GGTATTTATGTAATTTT
51339796 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
79 8 0.10
80 30 0.36
81 46 0.55
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (80 bp):
GGTATTTATGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGTATTTCGGTA
ATTTCACAAACCAGT
Found at i:51339796 original size:26 final size:26
Alignment explanation
Indices: 51339617--51339809 Score: 183
Period size: 27 Copynumber: 7.2 Consensus size: 26
51339607 TAGAAAGTCA
* *
51339617 AGGGTATTTAT-GTAATTTTGTAAATC
1 AGGGTATTT-TGGTAATTTTATAAACC
* **
51339643 AGTGGTATTTTGGTAATTTTACAAATTG
1 AG-GGTATTTTGGTAATTTTATAAA-CC
* * *
51339671 AGGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTTTGGTAATTTTATAAACC
*
51339697 AGTGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTATAAACC
*
51339724 AGTGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTATAAACC
*
51339751 AGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTATAAACC
* * *
51339777 AAGGGTA-TTTAGTAATTTTGTAAATCG
1 -AGGGTATTTTGGTAATTTTATAAA-CC
51339804 AGGGTA
1 AGGGTA
51339810 AAACAATAAT
Statistics
Matches: 148, Mismatches: 13, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
26 49 0.33
27 96 0.65
28 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTATAAACC
Found at i:51339837 original size:27 final size:27
Alignment explanation
Indices: 51339789--51339917 Score: 159
Period size: 27 Copynumber: 4.8 Consensus size: 27
51339779 GGGTATTTAG
*
51339789 TAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * *
51339816 TAATTCTGTAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* ***
51339843 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
*
51339870 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
51339897 TAATTATGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
51339918 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:51339862 original size:54 final size:54
Alignment explanation
Indices: 51339763--51339893 Score: 165
Period size: 54 Copynumber: 2.4 Consensus size: 54
51339753 GGTATTTTGG
* * ** * *
51339763 TAATTTTGTAAACCAAGGGT-ATTTAGTAATTTTGTAAATCGAGGGTAAAACAA
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
***
51339816 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
*
51339870 TAATTCTGTAAATCGAGGGTAAAA
1 TAATTCTGTAAATCAAGGGTAAAA
51339894 CGATAATTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 18 0.27
54 49 0.73
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (54 bp):
TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAA
Found at i:51339955 original size:81 final size:80
Alignment explanation
Indices: 51339778--51339947 Score: 196
Period size: 81 Copynumber: 2.1 Consensus size: 80
51339768 TTGTAAACCA
* *
51339778 AGGGTATTTAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAATAG
1 AGGGTATTTAGTAATTCTGTAAATCGAGGGTAAAACAATAATTATGTAAATCAAGGGTAAAATAG
*
51339843 TAATTCTATAAATCG
66 TAATTCTACAAATCG
** * * ** *** *
51339858 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTACTTTG
1 AGGGT-ATTTAGTAATTCTGTAAATCGAGGGTAAAACAATAATTATGTAAATCAAGGGTAAAATA
* *
51339923 GTAATTTTACAAGTCG
65 GTAATTCTACAAATCG
51339939 AGGGTATTT
1 AGGGTATTT
51339948 CAATAATTGG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
80 7 0.10
81 65 0.90
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (80 bp):
AGGGTATTTAGTAATTCTGTAAATCGAGGGTAAAACAATAATTATGTAAATCAAGGGTAAAATAG
TAATTCTACAAATCG
Found at i:51345664 original size:27 final size:27
Alignment explanation
Indices: 51345624--51345691 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
51345614 TTACCTAGAC
*
51345624 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
*
51345651 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACTATTTTG
* * *
51345678 TCGTTATATGGTAA
1 CCCTTATGTGGTAA
51345692 GGTGACTGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACTATTTTG
Found at i:51345697 original size:27 final size:27
Alignment explanation
Indices: 51345624--51345703 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
51345614 TTACCTAGAC
* * *
51345624 CCCTTATGTTGTAAAATGACTATTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
*
51345651 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* * **
51345678 TCGTTATATGGTAAGGTGACTGTTTT
1 CCCTTATATGGTAAAATGACTGTTTT
51345704 TCCCGATGTG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:51351849 original size:50 final size:50
Alignment explanation
Indices: 51351779--51351919 Score: 185
Period size: 50 Copynumber: 2.8 Consensus size: 50
51351769 CACATAATAA
* * * * *
51351779 GATGTCAATGTCATATCCCAGATATGGTCTTACAT-AGATTCACACATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGA-TCACAAATATC
* *
51351829 GATGCCAATGCCATGGCCCAGACATGGTCTTACATGGGATCACAAATATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
* *
51351879 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATC
51351920 TCATATTGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
50 79 0.98
51 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
GATGCCAATGCCATAGCCCAGACATGGTCTTACATGAGATCACAAATATC
Found at i:51359086 original size:22 final size:22
Alignment explanation
Indices: 51359058--51359133 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
51359048 AAGTGTGTAT
51359058 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
51359080 ATGTGATGAATG-TGAAAGTGTG-TA
1 ATGTGAT-AAGGCCG-AA-TG-GCCA
51359104 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
51359127 ATGTGAT
1 ATGTGAT
51359134 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:51359092 original size:47 final size:47
Alignment explanation
Indices: 51359023--51359225 Score: 277
Period size: 47 Copynumber: 4.3 Consensus size: 47
51359013 AGCTTAAGAT
51359023 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
51359070 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
51359117 CGAATGGCCAATGTGATGAATGTGAAAGTGCATACATGAGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
* ** * *
51359164 CAAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
51359209 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
51359226 AAAGTTTGCA
Statistics
Matches: 137, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
45 20 0.15
46 6 0.04
47 111 0.81
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:51359354 original size:39 final size:40
Alignment explanation
Indices: 51359296--51359380 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
51359286 AAATGAATTG
* * * *
51359296 TGCTGAGATTGAATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGAATCCGGGTTTAAAGACCCGCAGGCTTAA
* * *
51359335 TGCTGGGATTGTATTCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGAATCCGGGTTTAAAGACCCGCAGGCTTAA
51359375 TGCTGG
1 TGCTGG
51359381 TGAATTAAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 16 0.42
40 22 0.58
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGAATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:51362094 original size:39 final size:40
Alignment explanation
Indices: 51361968--51362111 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
51361958 ACTACTCGCT
* * *
51361968 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTAGCA
*
51362008 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
* **
51362048 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
*
51362087 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51362112 TTTTCATCCA
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 34 0.36
40 58 0.62
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTAGCA
Found at i:51365526 original size:51 final size:51
Alignment explanation
Indices: 51365471--51365571 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
51365461 AGAAAGAGAG
* *
51365471 AATTTCAAGTCGGTAATAAGGTGTTCTTAAAAGTATCACCTTGGAAGAAAT
1 AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
* *
51365522 AATTTCAAGTTGGTGATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
1 AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAA
51365572 ATTCTCCAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (51 bp):
AATTTCAAGTCGGTAATAAGATATTCTTAAAAGTATCACCTTGGAAGAAAT
Found at i:51367362 original size:24 final size:24
Alignment explanation
Indices: 51367299--51367370 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
51367289 TTGTTACATT
* *
51367299 GCTCTTAGTGAGCTTCTCGA-TATG
1 GCTCTTA-TGAGCTTCCCGATTATA
* * *
51367323 GTTCTTTGTGAACTTCCCGATTATA
1 GCTC-TTATGAGCTTCCCGATTATA
51367348 GCTCTTATGAGCTTCCC-ATTATA
1 GCTCTTATGAGCTTCCCGATTATA
51367371 TAGCCTGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
23 6 0.16
24 24 0.63
25 8 0.21
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.40
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCCGATTATA
Found at i:51369577 original size:37 final size:37
Alignment explanation
Indices: 51369534--51369774 Score: 187
Period size: 37 Copynumber: 6.6 Consensus size: 37
51369524 TAGTCAATGC
*
51369534 CAACCTTTAAAAAAGGTTGAGATAAACCTGTTTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* **
51369571 CAACCTTTAAAAAAGGTT-AGGATAGA-CTCGTCTAAAA
1 CAACCTTTAAAAAAGGTTGA-GATAAACCT-GTCTAAGG
*
51369608 CAA-CTTT-AAAAAGGTTG-GCATATACCTTGTCTAAGG
1 CAACCTTTAAAAAAGGTTGAG-ATAAACC-TGTCTAAGG
* * * *
51369644 AAACCTTTAAAAAAGGTTAAGATAAAGCTGTCTATGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
* * * * **
51369681 C-ACC-TT-AAAAGGGTTGGGATAGACCTCATCTAAAA
1 CAACCTTTAAAAAAGGTTGAGATAAACCT-GTCTAAGG
* * * *
51369716 CAACCTTTAAAATATGTTGAGATAGACCTATCTAAGG
1 CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
*
51369753 CAACC-TT-AAAAAGGTTGGGATA
1 CAACCTTTAAAAAAGGTTGAGATA
51369775 GATATTGTTT
Statistics
Matches: 160, Mismatches: 31, Indels: 28
0.73 0.14 0.13
Matches are distributed among these distances:
34 16 0.10
35 32 0.20
36 24 0.15
37 57 0.36
38 30 0.19
39 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (37 bp):
CAACCTTTAAAAAAGGTTGAGATAAACCTGTCTAAGG
Found at i:51369677 original size:73 final size:73
Alignment explanation
Indices: 51369538--51369677 Score: 187
Period size: 73 Copynumber: 1.9 Consensus size: 73
51369528 CAATGCCAAC
* * * *
51369538 CTTTAAAAAAGGTTGAGATAAACCTGTTTAAGGCAACCTTTAAAAAAGGTTAGGATAGACTCGTC
1 CTTTAAAAAAGGTTGAGATAAACCTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAACTCGTC
51369603 TAAAACAA
66 TAAAACAA
*
51369611 CTTT-AAAAAGGTTG-GCATATACCTTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAAGCT-
1 CTTTAAAAAAGGTTGAG-ATAAACC-TGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAA-CTC
51369673 GTCTA
63 GTCTA
51369678 TGGCACCTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
71 1 0.02
72 16 0.27
73 40 0.68
74 2 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (73 bp):
CTTTAAAAAAGGTTGAGATAAACCTGTCTAAGGAAACCTTTAAAAAAGGTTAAGATAAACTCGTC
TAAAACAA
Found at i:51369776 original size:73 final size:73
Alignment explanation
Indices: 51369572--51369776 Score: 200
Period size: 72 Copynumber: 2.8 Consensus size: 73
51369562 TGTTTAAGGC
* * * ** * * * *
51369572 AACCTTTAAAAAAGGTTAGGATAGA-CTCGTCTAAAACAACTTTAAAAAGGTTGGCATATACCTT
1 AACCTTTAAAAAAGGTTAAGATAAACCT-ATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTC
* *
51369636 GTCTAAGGA
65 ATCTAAGAA
* * * *
51369645 AACCTTTAAAAAAGGTTAAGATAAAGCTGTCTATGGC-ACCTTAAAAGGGTTGGGATAGACCTCA
1 AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTCA
51369709 TCTAA-AA
66 TCTAAGAA
* * * *
51369716 CAACCTTTAAAATATGTTGAGATAGACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGA
1 -AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGA
51369777 TATTGTTTAA
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
71 1 0.01
72 56 0.51
73 50 0.46
74 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (73 bp):
AACCTTTAAAAAAGGTTAAGATAAACCTATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTCA
TCTAAGAA
Found at i:51369849 original size:35 final size:36
Alignment explanation
Indices: 51369803--51369879 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 36
51369793 CCTTAAAAAA
* *
51369803 GTCTACGGCAACCTTAAAAAGGTTGGGATAGA-CTC
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
*
51369838 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTT
1 GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
51369874 GTCTAA
1 GTCTAA
51369880 AGGTCGGGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 30 0.79
36 8 0.21
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (36 bp):
GTCTAAGGCAACCTTAAAAAGGTTGCGATAGACCTC
Found at i:51369882 original size:58 final size:58
Alignment explanation
Indices: 51369820--51369937 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 58
51369810 GCAACCTTAA
* * * *
51369820 AAAGGTTGGGATAGACTCGTCTAAGGCAACCTTAAAAAGGTT-GCGATAGACCTTGTCT
1 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAG-GATAGACCTTGTCT
51369878 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
1 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
51369936 AA
1 AA
51369938 GGCAACCTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
58 54 0.98
59 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (58 bp):
AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCT
Found at i:51369902 original size:22 final size:23
Alignment explanation
Indices: 51369855--51369903 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
51369845 GCAACCTTAA
* *
51369855 AAAGGTTGCGATAGACCTTGTCT
1 AAAGGTCGCGATAGACCTCGTCT
*
51369878 AAAGGTCGGGATAGACC-CGTCT
1 AAAGGTCGCGATAGACCTCGTCT
51369900 AAAG
1 AAAG
51369904 CAACCCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (23 bp):
AAAGGTCGCGATAGACCTCGTCT
Found at i:51369925 original size:35 final size:35
Alignment explanation
Indices: 51369878--51370115 Score: 167
Period size: 35 Copynumber: 6.7 Consensus size: 35
51369868 GACCTTGTCT
* *
51369878 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * *
51369913 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAGCAACC-TTAA
** ** *
51369950 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCTTAA
* * *
51369985 AAAGTTTGGGATATACCTTGTCT-AAGACAACCTTTAA
1 AAAGGTTGGGATAGACC-CGTCTAAAG-CAACC-TTAA
* * * *
51370022 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
* * * *
51370057 AAAGGTTGGGATAAACCCAT-TTAAGACAATCTTAA
1 AAAGGTTGGGATAGACCCGTCTAAAG-CAACCTTAA
* * * *
51370092 AAGGGTTGGAATAAACACGTCTAA
1 AAAGGTTGGGATAGACCCGTCTAA
51370116 GGAAGTTTTT
Statistics
Matches: 157, Mismatches: 36, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
34 4 0.03
35 76 0.48
36 39 0.25
37 38 0.24
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (35 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCTTAA
Found at i:51369943 original size:36 final size:36
Alignment explanation
Indices: 51369878--51370069 Score: 176
Period size: 35 Copynumber: 5.4 Consensus size: 36
51369868 GACCTTGTCT
* * * *
51369878 AAAGGTCGGGATAGACC-CGTCTAAAGCAACCCTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
*
51369913 AAAGGTTAGGATAGACCTTGTCTAAGGCAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
** * **
51369950 AAAGGTTAAGATAGA-GTCT-TCTAATACAACCTTAA
1 AAAGGTTGGGATAGACCT-TGTCTAAGGCAACCTTAA
* * *
51369985 AAAGTTTGGGATATACCTTGTCTAAGACAACCTTTAA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACC-TTAA
* * * *
51370022 AAAGGTTGGGATAGACC-CGTTTAAGGCAATCTTTA
1 AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
51370057 AAAGGTTGGGATA
1 AAAGGTTGGGATA
51370070 AACCCATTTA
Statistics
Matches: 129, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
35 47 0.36
36 45 0.35
37 37 0.29
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (36 bp):
AAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTAA
Found at i:51369963 original size:37 final size:37
Alignment explanation
Indices: 51369886--51370069 Score: 166
Period size: 36 Copynumber: 5.1 Consensus size: 37
51369876 CTAAAGGTCG
* * *
51369886 GGATAGACC-CGTCTAAAGCAACC-CTAAAAAGGTTA
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
51369921 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
* * ** * *
51369958 AGATAGA-GTCT-TCTAATACAACC-TTAAAAAGTTTG
1 GGATAGACCT-TGTCTAAGGCAACCTTTAAAAAGGTTA
* * *
51369993 GGATATACCTTGTCTAAGACAACCTTTAAAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
* * * *
51370030 GGATAGACC-CGTTTAAGGCAATCTTT-AAAAGGTTG
1 GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
51370065 GGATA
1 GGATA
51370070 AACCCATTTA
Statistics
Matches: 124, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
35 39 0.31
36 48 0.39
37 37 0.30
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (37 bp):
GGATAGACCTTGTCTAAGGCAACCTTTAAAAAGGTTA
Found at i:51370035 original size:72 final size:72
Alignment explanation
Indices: 51369878--51370069 Score: 215
Period size: 72 Copynumber: 2.7 Consensus size: 72
51369868 GACCTTGTCT
* *
51369878 AAAGGTCGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGGCAA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
51369943 CCTTTAA
66 CCTTTAA
** ** * * * * *
51369950 AAAGGTTAAGATAGAGTCTTCTAATA-CAACCTTAAAAAGTTTGGGATATACCTTGTCTAAGACA
1 AAAGGTTGGGATAGACCCGTCTAA-AGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACA
51370014 ACCTTTAA
65 ACCTTTAA
* * * * * *
51370022 AAAGGTTGGGATAGACCCGTTTAAGGCAATCTTTAAAAGGTTGGGATA
1 AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATA
51370070 AACCCATTTA
Statistics
Matches: 97, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
72 96 0.99
73 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (72 bp):
AAAGGTTGGGATAGACCCGTCTAAAGCAACCCTAAAAAGGTTAGGATAGACCTTGTCTAAGACAA
CCTTTAA
Found at i:51371030 original size:16 final size:16
Alignment explanation
Indices: 51371009--51371044 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
51370999 AGGTGAAATC
* *
51371009 AATAAACTGTTATAAA
1 AATAAAATGTTAAAAA
51371025 AATAAAATGTTAAAAA
1 AATAAAATGTTAAAAA
51371041 AATA
1 AATA
51371045 TTGTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGTTAAAAA
Found at i:51376531 original size:129 final size:129
Alignment explanation
Indices: 51376299--51376562 Score: 368
Period size: 129 Copynumber: 2.0 Consensus size: 129
51376289 GTGTCGGCAT
* ** * *
51376299 AGTGTTGGACAAAGCTGACTCTTATTTAAGTGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * * *
51376364 AAATGATTGGCCAAAGCGTATATCGGCAAGTCTATCCCAACACTTAGGGAAGTGTCGGCCCAAA
66 AAAAGATTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
* *
51376428 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCTTTATAC
1 AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
* * * *
51376493 AAAA-AGTTGGCCAAAGCATATGTCGGCAAGTGTTTCCCAACATTTAAGAAAGTGTCGCCCCAAA
66 AAAAGA-TTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
51376557 AGTGTC
1 AGTGTC
51376563 TGTCCTAAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 1 0.01
129 117 0.99
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (129 bp):
AGTGTCGGACAAAGCCAACCCTTATTTAAGCGTTGCCCTAGGCATGCATATCCCAACCCTTATAC
AAAAGATTGGCCAAAGCATATATCGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCCCAAA
Found at i:51379994 original size:40 final size:40
Alignment explanation
Indices: 51379939--51380115 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
51379929 TGGATGATAA
* *
51379939 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51379979 CCGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51380019 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51380059 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51380098 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51380116 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 15 0.12
39 15 0.12
40 93 0.76
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51397719 original size:29 final size:29
Alignment explanation
Indices: 51397684--51397757 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51397674 GTTGTGAGAT
* *
51397684 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51397713 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51397742 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51397758 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51402277 original size:16 final size:17
Alignment explanation
Indices: 51402256--51402302 Score: 73
Period size: 16 Copynumber: 2.9 Consensus size: 17
51402246 GTAACACCCT
51402256 AAAAATCTC-GAAATCC
1 AAAAATCTCTGAAATCC
51402272 AAAAATC-CTGAAATCC
1 AAAAATCTCTGAAATCC
51402288 AAAAAT-TCTGAAATC
1 AAAAATCTCTGAAATC
51402303 TTGAATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.51, C:0.21, G:0.06, T:0.21
Consensus pattern (17 bp):
AAAAATCTCTGAAATCC
Found at i:51403427 original size:8 final size:8
Alignment explanation
Indices: 51403410--51403454 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
51403400 ATGTATCGGT
51403410 AAAAGCCG
1 AAAAGCCG
*
51403418 AAATGCCG
1 AAAAGCCG
51403426 AAAAGCCG
1 AAAAGCCG
*
51403434 AAAAGTCG
1 AAAAGCCG
* *
51403442 AAATGCTG
1 AAAAGCCG
51403450 AAAAG
1 AAAAG
51403455 TTGAAAGTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.18, G:0.24, T:0.09
Consensus pattern (8 bp):
AAAAGCCG
Found at i:51403443 original size:16 final size:16
Alignment explanation
Indices: 51403410--51403460 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
51403400 ATGTATCGGT
* *
51403410 AAAAGCCGAAATGCCG
1 AAAAGCCGAAAAGTCG
51403426 AAAAGCCGAAAAGTCG
1 AAAAGCCGAAAAGTCG
* * *
51403442 AAATGCTGAAAAGTTG
1 AAAAGCCGAAAAGTCG
51403458 AAA
1 AAA
51403461 GTTTGGCTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAAAGTCG
Found at i:51403772 original size:28 final size:29
Alignment explanation
Indices: 51403671--51403784 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
51403661 GTGAGTATGA
*
51403671 ATATGAATGTGA-TTGGGCC-AACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** * *
51403698 ATACAAATGTTATTTGGGGCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
51403727 ATAT-ACAGGTGATTTGGGCCGAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
51403756 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
51403784 A
1 A
51403785 GATATAGGTA
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
27 9 0.13
28 22 0.32
29 37 0.54
30 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:51412660 original size:16 final size:16
Alignment explanation
Indices: 51412641--51412683 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
51412631 TAAAAATCTC
51412641 GAAATCCGAAAATCCA
1 GAAATCCGAAAATCCA
** *
51412657 GAAATCAAAAAATCCT
1 GAAATCCGAAAATCCA
51412673 GAAATCTCGAA
1 GAAATC-CGAA
51412684 TTTTCTTTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 19 0.90
17 2 0.10
ACGTcount: A:0.51, C:0.21, G:0.12, T:0.16
Consensus pattern (16 bp):
GAAATCCGAAAATCCA
Found at i:51413806 original size:16 final size:16
Alignment explanation
Indices: 51413785--51413827 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
51413775 ATGTATTGGC
*
51413785 AAAAGTCGAAATGTCG
1 AAAAGTCGAAATGCCG
**
51413801 AAAAGTAAAAATGCCG
1 AAAAGTCGAAATGCCG
51413817 AAAAGTCGAAA
1 AAAAGTCGAAA
51413828 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.12, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:51414104 original size:28 final size:29
Alignment explanation
Indices: 51414043--51414105 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
51414033 TAGGCCTAAC
*
51414043 GGGCCATATAAACGTGATTTGGGCTTAAT
1 GGGCCATATAAACATGATTTGGGCTTAAT
* * * *
51414072 AGGCCATATGAATATGA-TTGGGCTTAGT
1 GGGCCATATAAACATGATTTGGGCTTAAT
51414100 GGGCCA
1 GGGCCA
51414106 GAATCAGGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
GGGCCATATAAACATGATTTGGGCTTAAT
Found at i:51420142 original size:48 final size:48
Alignment explanation
Indices: 51420040--51420410 Score: 161
Period size: 48 Copynumber: 7.8 Consensus size: 48
51420030 GACCACGTAT
* * * * * *
51420040 CAATGCCATATCCCAAATATGGTTTTATACAAAATCTCATATCGGTGT
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGC
* * * * *
51420088 CGATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATCGATAC
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGC
* * * * *
51420136 CAATGCCATAT-CCTAGCTATGGTCTTACATGGGATCTCATA-CTGATGC
1 CAATGCCATATCCCAAAC-ATGGTCTTATACGAGATCTCATATC-GATGC
* * * * *
51420184 CGATGCCATGTCCCAGACATGGTCTTATATGGGATCTC-T-T--AT--
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGC
* * * * * * *
51420226 CAATGCCATGTCCCAAACATGGTTTTACACGAAATCACTTAAT-GGTGC
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCAT-ATCGATGC
* * * * * *
51420274 CGAA-GCCATATCCCTAATATGGTCTTATAC-ATGATCACATCTTGATAC
1 C-AATGCCATATCCCAAACATGGTCTTATACGA-GATCTCATATCGATGC
* * * * * * * * * *
51420322 CGATGTCATGTCCCAGACATGATCTTACACGGGATCTCATTTTGAATGT
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCG-ATGC
* * * ** *
51420371 CGATGTCATGTATCAAACATGGTCTTACACGAGATCTCAT
1 CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCAT
51420411 TAACCATGGT
Statistics
Matches: 243, Mismatches: 64, Indels: 31
0.72 0.19 0.09
Matches are distributed among these distances:
42 30 0.12
43 1 0.00
44 2 0.01
45 1 0.00
46 1 0.00
47 9 0.04
48 157 0.65
49 42 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (48 bp):
CAATGCCATATCCCAAACATGGTCTTATACGAGATCTCATATCGATGC
Found at i:51420282 original size:90 final size:90
Alignment explanation
Indices: 51419994--51420302 Score: 239
Period size: 90 Copynumber: 3.4 Consensus size: 90
51419984 ACCAAATAGA
* * * * * *
51419994 GTGCCAAAGCCATGTCCC-GAACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAAT
1 GTGCCGAAGCCATGTCCCAG-ACATGGTCTTATATGGGATCTCATATCAATGCCATATCCCAAAC
* *
51420058 ATGGTTTTATACAAAATCTCAT-ATCG
65 ATGGTTTTACACGAAATCTCATAAT-G
* * * * * *
51420084 GTGTCGATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATCGATACCAATGCCATAT-C
1 GTGCCGAAGCCATGTCCCAGACATGGTCTTATATGGGA--T--C-TC-ATATCAATGCCATATCC
* * * * ** *
51420148 CTAGCTATGGTCTTACATGGGATCTCATACTG
60 CAAAC-ATGGTTTTACACGAAATCTCATAATG
* * * *
51420180 ATGCCGATGCCATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCCATGTCCCAAACA
1 GTGCCGAAGCCATGTCCCAGACATGGTCTTATATGGGATCTCATATCAATGCCATATCCCAAACA
* *
51420245 TGGTTTTACACGAAATCACTTAATG
66 TGGTTTTACACGAAATCTCATAATG
* *
51420270 GTGCCGAAGCCATATCCCTA-ATATGGTCTTATA
1 GTGCCGAAGCCATGTCCC-AGACATGGTCTTATA
51420303 CATGATCACA
Statistics
Matches: 166, Mismatches: 42, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
90 88 0.53
91 7 0.04
92 1 0.01
94 2 0.01
95 4 0.02
96 63 0.38
97 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (90 bp):
GTGCCGAAGCCATGTCCCAGACATGGTCTTATATGGGATCTCATATCAATGCCATATCCCAAACA
TGGTTTTACACGAAATCTCATAATG
Found at i:51420350 original size:186 final size:186
Alignment explanation
Indices: 51420002--51420399 Score: 439
Period size: 186 Copynumber: 2.1 Consensus size: 186
51419992 GAGTGCCAAA
*
51420002 GCCATGTCCC-GAACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAATATGGTTTT
1 GCCATGTCCCAG-ACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTT
* * * * *
51420066 ATACAAAATCTCATATCGGTGTCGATGCCATGTCCCAAACATGGTCTTATACGAGACCTCACATC
65 ACACAAAATCACATATCGGTGCCGAAGCCATATCCCAAACATGGTCTTATACGAGA-CTCACATC
* * *
51420131 GATACCAATGCCATATCCTAGCTATGGTCTTACATGGGATCTCATACTG-ATGCCGAT
129 GATACCAATGCCATATCCCAGCTATGATCTTACACGGGATCTCATACTGAATGCCGAT
* * * * *
51420188 GCCATGTCCCAGACATGGTCTTATATGGGATCTCTTATCAATGCCATGTCCCAAACATGGTTTTA
1 GCCATGTCCCAGACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTTA
* * * *
51420253 CACGAAATCACTTAAT-GGTGCCGAAGCCATATCCCTAATATGGTCTTATAC-ATGA-TCACATC
66 CACAAAATCACAT-ATCGGTGCCGAAGCCATATCCCAAACATGGTCTTATACGA-GACTCACATC
* * * ** *
51420315 TTGATACCGATGTCATGTCCCAGAC-ATGATCTTACACGGGATCTCATTTTGAATGTCGAT
129 --GATACCAATGCCATATCCCAG-CTATGATCTTACACGGGATCTCATACTGAATGCCGAT
* ** *
51420375 GTCATGTATCAAACATGGTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
51420400 CGAGATCTCA
Statistics
Matches: 176, Mismatches: 29, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
184 7 0.04
185 1 0.01
186 137 0.78
187 31 0.18
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (186 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCACGTATCAATGCCATATCCCAAACATGGTTTTA
CACAAAATCACATATCGGTGCCGAAGCCATATCCCAAACATGGTCTTATACGAGACTCACATCGA
TACCAATGCCATATCCCAGCTATGATCTTACACGGGATCTCATACTGAATGCCGAT
Found at i:51421735 original size:26 final size:24
Alignment explanation
Indices: 51421705--51421864 Score: 124
Period size: 23 Copynumber: 6.8 Consensus size: 24
51421695 AGACTCACCA
51421705 CAGCTCGTAAGAGCTTACTGATATAT
1 CAGCTCGTAAGAGCTTACTGAT-T-T
51421731 CAGCTCGTAAGAGCTTACT-ATTTT
1 CAGCTCGTAAGAGCTTACTGA-TTT
* * *
51421755 CAGCTCATTAGAGCTTACCG-TTT
1 CAGCTCGTAAGAGCTTACTGATTT
* *
51421778 TAGCTCGTACGAGCTTACT-ATTT
1 CAGCTCGTAAGAGCTTACTGATTT
*
51421801 -AGCTC-AATAGAGCTTACTG--TT
1 CAGCTCGTA-AGAGCTTACTGATTT
*
51421822 CAGCTCG-ATAGAGCTTACCG-TTT
1 CAGCTCGTA-AGAGCTTACTGATTT
*
51421845 CAGCTC-AATAGAGCTTACTG
1 CAGCTCGTA-AGAGCTTACTG
51421865 CTCATCAGCT
Statistics
Matches: 113, Mismatches: 12, Indels: 21
0.77 0.08 0.14
Matches are distributed among these distances:
21 3 0.03
22 31 0.27
23 40 0.35
24 17 0.15
25 2 0.02
26 20 0.18
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTGATTT
Found at i:51421804 original size:22 final size:21
Alignment explanation
Indices: 51421706--51421863 Score: 102
Period size: 22 Copynumber: 6.8 Consensus size: 21
51421696 GACTCACCAC
51421706 AGCTCGTAAGAGCTTACTGATATAT
1 AGCTCGT-AGAGCTTACT-AT-T-T
51421731 CAGCTCGTAAGAGCTTACTATTTT
1 -AGCTCGT-AGAGCTTACTA-TTT
*
51421755 CAGCTCATTAGAGCTTACCGT-TTT
1 -AGCTC-GTAGAGCTTA-C-TATTT
51421779 AGCTCGTACGAGCTTACTATTT
1 AGCTCGTA-GAGCTTACTATTT
* * *
51421801 AGCTCAATAGAGCTTACTGTTC
1 AGCTC-GTAGAGCTTACTATTT
**
51421823 AGCTCGATAGAGCTTACCGTTT
1 AGCTCG-TAGAGCTTACTATTT
*
51421845 CAGCTCAATAGAGCTTACT
1 -AGCTC-GTAGAGCTTACT
51421864 GCTCATCAGC
Statistics
Matches: 112, Mismatches: 10, Indels: 23
0.77 0.07 0.16
Matches are distributed among these distances:
21 1 0.01
22 40 0.36
23 29 0.26
24 18 0.16
25 4 0.04
26 20 0.18
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (21 bp):
AGCTCGTAGAGCTTACTATTT
Found at i:51421850 original size:45 final size:45
Alignment explanation
Indices: 51421714--51421864 Score: 162
Period size: 45 Copynumber: 3.2 Consensus size: 45
51421704 ACAGCTCGTA
* *
51421714 AGAGCTTACTGATATATCAGCTCGTAAGAGCTTACTATTTTCAGCTCATT
1 AGAGCTTACTG-T-T-TCAGCTCGT-AGAGCTTAC-AATTTCAGCTCAAT
* * *
51421764 AGAGCTTACCGTTTTAGCTCGTACGAGCTTACTATTT-AGCTCAAT
1 AGAGCTTACTGTTTCAGCTCGTA-GAGCTTACAATTTCAGCTCAAT
**
51421809 AGAGCTTACTG-TTCAGCTCGATAGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCG-TAGAGCTTACAATTTCAGCTCAAT
51421854 AGAGCTTACTG
1 AGAGCTTACTG
51421865 CTCATCAGCT
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
44 19 0.21
45 38 0.43
46 4 0.04
47 16 0.18
48 1 0.01
49 1 0.01
50 10 0.11
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
AGAGCTTACTGTTTCAGCTCGTAGAGCTTACAATTTCAGCTCAAT
Found at i:51437498 original size:20 final size:20
Alignment explanation
Indices: 51437436--51437501 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
51437426 AAAATGCCAT
51437436 ATCACATAAGACATATATAC
1 ATCACATAAGACATATATAC
*
51437456 ATCATC-TCAA-ATCA-A-A-CC
1 ATCA-CAT-AAGA-CATATATAC
51437474 ATCACATAAGACATATATAC
1 ATCACATAAGACATATATAC
51437494 ATCACATA
1 ATCACATA
51437502 TATCACTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
17 5 0.14
18 8 0.22
19 2 0.06
20 16 0.44
21 5 0.14
ACGTcount: A:0.48, C:0.24, G:0.03, T:0.24
Consensus pattern (20 bp):
ATCACATAAGACATATATAC
Found at i:51452425 original size:25 final size:26
Alignment explanation
Indices: 51452366--51452419 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
51452356 AAAACCAAAC
51452366 AGCAAATGACCCAGTTTTTCAGGTTT
1 AGCAAATGACCCAGTTTTTCAGGTTT
51452392 AGCAAATGACCCAGTTTTTCAGGTTT
1 AGCAAATGACCCAGTTTTTCAGGTTT
51452418 AG
1 AG
51452420 GAATGATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (26 bp):
AGCAAATGACCCAGTTTTTCAGGTTT
Found at i:51459490 original size:49 final size:49
Alignment explanation
Indices: 51459421--51459712 Score: 461
Period size: 49 Copynumber: 6.1 Consensus size: 49
51459411 GAAATGATAG
51459421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51459470 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51459517 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
51459566 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
51459613 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
51459662 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51459709 TAAG
1 TAAG
51459713 TCCCGAAGGG
Statistics
Matches: 226, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
47 100 0.44
48 1 0.00
49 125 0.55
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:51459585 original size:96 final size:96
Alignment explanation
Indices: 51459421--51459712 Score: 503
Period size: 96 Copynumber: 3.0 Consensus size: 96
51459411 GAAATGATAG
*
51459421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
51459486 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
51459517 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
51459582 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
51459613 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
51459678 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
51459709 TAAG
1 TAAG
51459713 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 187 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51459887 original size:37 final size:37
Alignment explanation
Indices: 51459831--51459909 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51459821 CCGAGCTCTA
* * *
51459831 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51459868 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51459905 AAGAC
1 AAGAC
51459910 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51462053 original size:27 final size:28
Alignment explanation
Indices: 51461969--51462063 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
51461959 GAGATTGGCG
*
51461969 CTAAGTGTGCGGGTTTAAATTATATAGCA
1 CTAAGTGTGCGAGTTT-AATTATATAGCA
*
51461998 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTATATAGCA
*
51462026 CTAAGTGTGCGAG-TTCATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTATATAGCA
*
51462053 CTGAGTGTGCG
1 CTAAGTGTGCG
51462064 GACTTAATAT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 23 0.37
28 24 0.39
29 15 0.24
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTAATTATATAGCA
Found at i:51462074 original size:27 final size:27
Alignment explanation
Indices: 51461987--51462077 Score: 110
Period size: 28 Copynumber: 3.3 Consensus size: 27
51461977 GCGGGTTTAA
* *
51461987 ATTATATAGCACTAAGTGTGCGAGTTTG
1 ATTATATAGCACTAAGTGTGCGA-CTTC
*
51462015 ATTATATAGCACTAAGTGTGCGAGTTC
1 ATTATATAGCACTAAGTGTGCGACTTC
* *
51462042 ATTATATAGCACTGAGTGTGCGGACTTA
1 ATTATATAGCACTAAGTGTGC-GACTTC
51462070 ATATATAT
1 AT-TATAT
51462078 TTTTGAATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
27 22 0.39
28 29 0.52
29 5 0.09
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (27 bp):
ATTATATAGCACTAAGTGTGCGACTTC
Found at i:51464684 original size:55 final size:54
Alignment explanation
Indices: 51464589--51464738 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
51464579 CTACTTTGTT
* ** * *
51464589 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
51464643 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
51464698 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
51464739 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:51464701 original size:27 final size:27
Alignment explanation
Indices: 51464561--51464738 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
51464551 TAAATTGTAC
51464561 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
51464588 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
51464614 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
51464642 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
51464670 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
51464697 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
51464724 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51464739 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:51464702 original size:82 final size:81
Alignment explanation
Indices: 51464562--51464717 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
51464552 AAATTGTACA
* * * *
51464562 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
51464627 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
51464643 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
51464706 TGTGCGAGTTGA
63 TGTGCGAATTGA
51464718 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:51472690 original size:55 final size:54
Alignment explanation
Indices: 51472595--51472744 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
51472585 CTACTTTGTT
* ** * *
51472595 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
51472649 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
51472704 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
51472745 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:51472707 original size:27 final size:27
Alignment explanation
Indices: 51472567--51472744 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
51472557 TAAATTGTAC
51472567 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
51472594 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
51472620 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
51472648 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
51472676 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
51472703 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
51472730 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51472745 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:51472708 original size:82 final size:81
Alignment explanation
Indices: 51472568--51472723 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
51472558 AAATTGTACA
* * * *
51472568 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
51472633 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
51472649 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
51472712 TGTGCGAGTTGA
63 TGTGCGAATTGA
51472724 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:51474808 original size:719 final size:716
Alignment explanation
Indices: 51473431--51474812 Score: 2004
Period size: 719 Copynumber: 1.9 Consensus size: 716
51473421 GGGTAGGCAT
* *
51473431 GAAATGGACCTAGTTACCTTCGTAACAGATGCTGGCAGCAGCAGTGTCATGAGATTGAAAAATCA
1 GAAATGGACATAGTTACCTTCGTAACAGATGCTGGCAGCAGCAGTGACATGAGATTGAAAAATCA
51473496 CTAAAAATAGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGT
66 CTAAAAATAGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGT
* * * *
51473561 TTTCATGAGGAAGTAACGAAAAGATCATATGGGCAGTATATTAAGAGATAATCAGATTTTAGTGG
131 TTTCATGAAGAAGTAACGAAAAGATCATATGGACAGTATATTAAGAGATAATCAGATTCTAGTGA
51473626 GACAGGGCCAGAACGGTTTCTGGATTCCCTGCTCCAACTTTGGAAATTCATTATAAATTAACCAG
196 GACAGGGCCAGAACGGTTTCTGGATTCCCTGCTCCAACTTTGGAAATTCATTATAAATTAACCAG
* * *
51473691 AGATAATTAGGGGTCGTACCATATATGTGCAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAA
261 AGATAATTAGGAGTCATACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAA
* * *
51473756 ACGGCAACAGTATTGAAGCCCCGTGCAGGGAGATATCCCAGTCGTAATGGGCAAAGGTCAGTGTA
326 ACGACAACAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCGCAAAGGTCAGTGTA
*
51473821 GTCGACCCCTGCAACTTGGGGAACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTC
391 GTCGACCCCTGCAACATGGGGAACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTC
* * * *
51473886 TAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCTGGGAAAAATTACGAAACTGATTTTC
456 TACAAAAAAATACATA-ATAGGCACATGAGTCTAGTTCCAGGGAAAAATTACGAAACTGATTTTC
*
51473951 GAGTTACGAAACTCAAGATATGAATTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTGGAAA
520 GAGTTACGAAACTCAAGATATGAATTTTAAAACGACTAGTACACAGATTGGACAGTGTCTGGAAA
* *** * *
51474016 ATAAATTTTGTAAGAGGGTAAAGCCAGTTAACACCTCGTGTTCGACCCCGATGACGGTTTCGGGT
585 AT--AGTCAATAAGAGGGTAAAGCCAGTTAACACCTCGTGTTCGACCCCGACGACGGTCTCGGGT
51474081 TCGGGGTGTTACATGATCATAATTTGTGATATGTATGATGAATTACTAGTTAGATCAAGGAGAAA
648 TCGGGGTGTTACATGATCATAATTTGTGATATGTATGATGAATTACTAGTTAGATCAAGGAGAAA
51474146 TCAC
713 TCAC
* * * *
51474150 GAAATGGGCATAGTTGCTTTCGTAACAGATGCTGGCAGCAGCAGTGACGTGAGATTGAAAAATCA
1 GAAATGGACATAGTTACCTTCGTAACAGATGCTGGCAGCAGCAGTGACATGAGATTGAAAAATCA
51474215 CTAAAAATAGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGT
66 CTAAAAATAGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGT
* * * * *
51474280 TTTCAT-ATAGAAGTAACGAAACGATCATATGGACAGTATGTTAAGAGATATTCAGGTTCTCGTG
131 TTTCATGA-AGAAGTAACGAAAAGATCATATGGACAGTATATTAAGAGATAATCAGATTCTAGTG
* *
51474344 AGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAATTCATTATAAATTAACCA
195 AGACAGGGCCAGAACGGTTTCTGGATTCCCTGCTCCAACTTTGGAAATTCATTATAAATTAACCA
* *
51474409 GAGATAATTAGGAGTCATGCCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACA
260 GAGATAATTAGGAGTCATACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACA
** * * * * *
51474474 AACGACATTAGTATTTAAGCTCTGTGCAGGGAGATATCCAATTCGTAATGCGCAAGGGTCAGTGT
325 AACGACAACAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCGCAAAGGTCAGTGT
* * * *
51474539 AGTCGATCCCTGTAACATGGGAGAA-TTTGACTAATAAACTGTACTAATTTGCCCGACCAAAAAA
390 AGTCGACCCCTGCAACATGGG-GAACTTTGACTAATAAACTGTACTAATTGGCCCAACC-AAAAA
** * * * *
51474603 TTCTACAAAAATTCTACCAT-ATAGGTATATGAGTCTAGTTCCAGGGAAAATTTACGGAACTGGA
453 TTCTACAAAAA-AATA-CATAATAGGCACATGAGTCTAGTTCCAGGGAAAAATTACGAAACT-GA
* * * *
51474667 -TTTCGAGTTTC-AGAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAGATT-GACAGCTTG
515 TTTTCGAGTTACGA-AACTCAAGATATGAATTTTAAAACGACTAGTACACAGATTGGACAG--TG
* * * * * * * *
51474729 TCTGGGAAAT-GTCAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGACTCCGGCGACGGT
577 TCTGGAAAATAGTCAATAAGAGG-GTAAAGCCAGTTAACACCTCGTGTTCGACCCCGACGACGGT
51474793 CTCGGGTTCGGGGTGTTACA
641 CTCGGGTTCGGGGTGTTACA
51474813 ATTTTATTGG
Statistics
Matches: 587, Mismatches: 66, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
718 8 0.01
719 462 0.79
720 99 0.17
721 15 0.03
722 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (716 bp):
GAAATGGACATAGTTACCTTCGTAACAGATGCTGGCAGCAGCAGTGACATGAGATTGAAAAATCA
CTAAAAATAGTAGGAGTGGAATTAATTGATGAATAAATTATGTAATCGAAGCTCGATGAGTCTGT
TTTCATGAAGAAGTAACGAAAAGATCATATGGACAGTATATTAAGAGATAATCAGATTCTAGTGA
GACAGGGCCAGAACGGTTTCTGGATTCCCTGCTCCAACTTTGGAAATTCATTATAAATTAACCAG
AGATAATTAGGAGTCATACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTCCATAGAAACAA
ACGACAACAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGCGCAAAGGTCAGTGTA
GTCGACCCCTGCAACATGGGGAACTTTGACTAATAAACTGTACTAATTGGCCCAACCAAAAATTC
TACAAAAAAATACATAATAGGCACATGAGTCTAGTTCCAGGGAAAAATTACGAAACTGATTTTCG
AGTTACGAAACTCAAGATATGAATTTTAAAACGACTAGTACACAGATTGGACAGTGTCTGGAAAA
TAGTCAATAAGAGGGTAAAGCCAGTTAACACCTCGTGTTCGACCCCGACGACGGTCTCGGGTTCG
GGGTGTTACATGATCATAATTTGTGATATGTATGATGAATTACTAGTTAGATCAAGGAGAAATCA
C
Found at i:51481292 original size:27 final size:28
Alignment explanation
Indices: 51481211--51481305 Score: 147
Period size: 27 Copynumber: 3.4 Consensus size: 28
51481201 GAGATTGGCG
* *
51481211 CTAAGTGTGCGGGTTTAAATTATATAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
51481240 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51481268 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51481295 CTGAGTGTGCG
1 CTAAGTGTGCG
51481306 GACTTAATAT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
27 24 0.38
28 24 0.38
29 15 0.24
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:51481316 original size:27 final size:27
Alignment explanation
Indices: 51481229--51481319 Score: 119
Period size: 28 Copynumber: 3.3 Consensus size: 27
51481219 GCGGGTTTAA
*
51481229 ATTATATAGCACTAAGTGTGCGAGTTTG
1 ATTATATAGCACTAAGTGTGCGA-CTTG
*
51481257 ATTATATAGCACTAAGTGTGCGAGTTG
1 ATTATATAGCACTAAGTGTGCGACTTG
* *
51481284 ATTATATAGCACTGAGTGTGCGGACTTA
1 ATTATATAGCACTAAGTGTGC-GACTTG
51481312 ATATATAT
1 AT-TATAT
51481320 TTTTGAATCA
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
27 23 0.40
28 29 0.51
29 5 0.09
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (27 bp):
ATTATATAGCACTAAGTGTGCGACTTG
Found at i:51484293 original size:43 final size:43
Alignment explanation
Indices: 51484245--51484341 Score: 194
Period size: 43 Copynumber: 2.3 Consensus size: 43
51484235 TTGGTTTTCA
51484245 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
51484288 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
51484331 GCACTAAGTGT
1 GCACTAAGTGT
51484342 TCACGGTTGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:51484338 original size:28 final size:28
Alignment explanation
Indices: 51484302--51484369 Score: 127
Period size: 28 Copynumber: 2.4 Consensus size: 28
51484292 TAAGTGTGCG
*
51484302 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
51484330 GGCACTAAGTGTTCACGGTTGTGAGATT
1 GGCACTAAGTGTTCACGGTTGTGAGATT
51484358 GGCACTAAGTGT
1 GGCACTAAGTGT
51484370 GCGGGCAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTTCACGGTTGTGAGATT
Found at i:51484380 original size:71 final size:71
Alignment explanation
Indices: 51484259--51484412 Score: 290
Period size: 71 Copynumber: 2.2 Consensus size: 71
51484249 TAAGTGTGCG
*
51484259 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGT
1 GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGT
51484324 GAGATT
66 GAGATT
*
51484330 GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTTT
1 GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGT
51484395 GAGATT
66 GAGATT
51484401 GGCACTAAGTGT
1 GGCACTAAGTGT
51484413 GCGGGCTTGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 81 1.00
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (71 bp):
GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGT
GAGATT
Found at i:51484382 original size:43 final size:43
Alignment explanation
Indices: 51484330--51484418 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
51484320 TTGTGAGATT
*
51484330 GGCACTAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
*
51484373 GGCAATAAGTGTTCACGGTTTTGAGATTGGCACTAAGTGTGCG
1 GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
51484416 GGC
1 GGC
51484419 TTGAAATGCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (43 bp):
GGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGTGCG
Found at i:51484435 original size:29 final size:29
Alignment explanation
Indices: 51484400--51484473 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51484390 GTTTTGAGAT
* *
51484400 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51484429 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51484458 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51484474 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51484867 original size:40 final size:39
Alignment explanation
Indices: 51484823--51484920 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 39
51484813 AGTGACCATA
* *
51484823 TCCGGACTAAGATCCGAAGCCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-CCCGAAGCCATTGGTGCGAGTTACTAAT
* * *
51484863 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGCCCGAAGCCATTGGTGCGAGTTACTAAT
* *
51484902 ACCGGGCTAAGTCCCGAAG
1 TCCGGACTAAG-CCCGAAG
51484921 AGCATTCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 34 0.67
40 17 0.33
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGCCATTGGTGCGAGTTACTAAT
Found at i:51484891 original size:39 final size:40
Alignment explanation
Indices: 51484783--51484971 Score: 154
Period size: 40 Copynumber: 4.7 Consensus size: 40
51484773 TTGAATGATG
* * *
51484783 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
51484822 ATCCGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51484863 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * * **
51484902 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* *
51484942 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGC
51484972 TAGTGAGGAA
Statistics
Matches: 123, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 67 0.54
41 22 0.18
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51484947 original size:40 final size:40
Alignment explanation
Indices: 51484903--51485057 Score: 166
Period size: 40 Copynumber: 3.9 Consensus size: 40
51484893 GTTACTAAAA
*
51484903 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * * *
51484943 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGAAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * * *
51484983 CCGAACTATGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
51485023 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
51485058 CGTGTATTCG
Statistics
Matches: 95, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:51488397 original size:49 final size:49
Alignment explanation
Indices: 51488328--51488619 Score: 461
Period size: 49 Copynumber: 6.1 Consensus size: 49
51488318 GAAATGATAG
51488328 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51488377 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51488424 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
51488473 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
51488520 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
51488569 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
51488616 TAAG
1 TAAG
51488620 TCCCGAAGGG
Statistics
Matches: 226, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
47 100 0.44
48 1 0.00
49 125 0.55
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:51488492 original size:96 final size:96
Alignment explanation
Indices: 51488328--51488619 Score: 503
Period size: 96 Copynumber: 3.0 Consensus size: 96
51488318 GAAATGATAG
*
51488328 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
51488393 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
51488424 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
51488489 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
51488520 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
51488585 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
51488616 TAAG
1 TAAG
51488620 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 187 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:51488794 original size:37 final size:37
Alignment explanation
Indices: 51488738--51488816 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51488728 CCGAGCTCTA
* * *
51488738 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51488775 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51488812 AAGAC
1 AAGAC
51488817 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51490614 original size:24 final size:24
Alignment explanation
Indices: 51490586--51490633 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
51490576 TACTTTGGTA
* *
51490586 TCCGTGGTGCCGAGAGAAAGACTT
1 TCCGTGGTGCCAAAAGAAAGACTT
51490610 TCCGTGGTGCCAAAAGAAAGACTT
1 TCCGTGGTGCCAAAAGAAAGACTT
51490634 ACCTGGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (24 bp):
TCCGTGGTGCCAAAAGAAAGACTT
Found at i:51504567 original size:44 final size:44
Alignment explanation
Indices: 51504504--51504615 Score: 163
Period size: 44 Copynumber: 2.5 Consensus size: 44
51504494 TATTATATAG
* *
51504504 GGATTACTCGTCCGGGCTAAATCCTTTTTATAACAAGGTCATTA
1 GGATTACCCGTTCGGGCTAAATCCTTTTTATAACAAGGTCATTA
*
51504548 GGATTACCCGTTCGGGCTAAATCCTTTTTATAACAAGGTCATTG
1 GGATTACCCGTTCGGGCTAAATCCTTTTTATAACAAGGTCATTA
* *
51504592 GGATT-CCTCGCTCGAGCTAAATCC
1 GGATTACC-CGTTCGGGCTAAATCC
51504616 CGTCTGCAAC
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 2 0.03
44 60 0.97
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
GGATTACCCGTTCGGGCTAAATCCTTTTTATAACAAGGTCATTA
Found at i:51504627 original size:44 final size:44
Alignment explanation
Indices: 51504535--51504627 Score: 98
Period size: 44 Copynumber: 2.1 Consensus size: 44
51504525 TCCTTTTTAT
* * ** * *
51504535 AACAAGGTCATTAGGATTACCCGTTCGGGCTAAATCCTTTTTAT
1 AACAAGGTCATTAGGATTACCCGCTCGAGCTAAATCCCGTCTAC
* *
51504579 AACAAGGTCATTGGGATT-CCTCGCTCGAGCTAAATCCCGTCTGC
1 AACAAGGTCATTAGGATTACC-CGCTCGAGCTAAATCCCGTCTAC
51504623 AACAA
1 AACAA
51504628 ATGCAGGACC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 2 0.05
44 38 0.95
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
AACAAGGTCATTAGGATTACCCGCTCGAGCTAAATCCCGTCTAC
Found at i:51510623 original size:48 final size:48
Alignment explanation
Indices: 51510547--51510725 Score: 259
Period size: 48 Copynumber: 3.7 Consensus size: 48
51510537 TAAAGTACCA
* * **
51510547 ATGCTATGTCCCAGACATGATCTTACACTGGCACACATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* * *
51510595 ATGCCATGTCCTAGACTTGGTCTTACACTAGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
51510643 ATGCCATGTCCCAGACATGGCCTTAAACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* *
51510691 ATGCCATGTCCTAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
51510726 TATAACACGG
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 115 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:51514542 original size:47 final size:47
Alignment explanation
Indices: 51514482--51514603 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
51514472 GCATTGGCAC
*
51514482 TAAGACAATGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
51514529 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
51514576 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
51514604 CTAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:51514707 original size:55 final size:54
Alignment explanation
Indices: 51514582--51514789 Score: 215
Period size: 55 Copynumber: 3.9 Consensus size: 54
51514572 TTGGTAAGAT
* * *
51514582 AAGGATATCATGTAAGACCATG-CTAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
51514636 AAGGAAATCATGTAAGACCGTGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * * *
51514691 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTTAGTT-TATAAAGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
51514744 AAGGATACCACGTAAGACCATGTCAAGAAATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
51514790 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 38 0.30
55 42 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:51519027 original size:48 final size:48
Alignment explanation
Indices: 51518956--51519230 Score: 338
Period size: 48 Copynumber: 5.7 Consensus size: 48
51518946 TAAAGTACCA
* *
51518956 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCG
* * **
51519004 ATGCCATGTCCTAGACATGGTCTTACACTGACACACATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * * *
51519052 ATTCTATGTCCCAGACATGGTTTTACACTGGCACACATAGCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * *
51519100 ATGCCATGTCCCAGACATGGCCCTACACTGGCACACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* * ** *
51519148 ATGCCATGTCCCAGACATGGCCATACACTGGCACACATATCATTTCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
* *
51519196 ATGCCATGTCCTAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
51519231 TATAGCACGG
Statistics
Matches: 195, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
48 193 0.99
49 1 0.01
50 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
Found at i:51521186 original size:28 final size:28
Alignment explanation
Indices: 51521122--51521189 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
51521112 ATTTTCCTTT
*
51521122 GCACACCTAGTGCTCGTTAACCAAACTC
1 GCACACTTAGTGCTCGTTAACCAAACTC
51521150 GCACACTTAGTGCTCGTTAACCAAACTC
1 GCACACTTAGTGCTCGTTAACCAAACTC
*
51521178 GCACGCTTAGTG
1 GCACACTTAGTG
51521190 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (28 bp):
GCACACTTAGTGCTCGTTAACCAAACTC
Done.