genome.fa.s12.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  156  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51523197--51523278	26	3.2	26	92	0	146	32	7	24	35	1.83
51527831--51527946	43	2.7	44	79	2	128	32	25	15	25	1.95
51537176--51537268	46	2.0	46	83	4	116	32	30	18	19	1.95
51537076--51537455	200	1.9	201	92	0	636	34	25	17	22	1.96
51537388--51537545	46	3.4	46	71	14	153	30	28	18	22	1.98
51548312--51548518	27	7.6	27	90	3	297	26	13	28	31	1.93
51548312--51548518	55	3.8	55	95	0	342	26	13	28	31	1.93
51550518--51550547	12	2.5	12	94	0	51	10	23	40	26	1.86
51570584--51570623	20	2.0	20	90	0	62	10	5	12	72	1.26
51572284--51572465	40	4.6	40	86	2	242	27	25	23	24	2.00
51572284--51572465	80	2.3	80	89	0	267	27	25	23	24	2.00
51576576--51576611	18	2.0	18	94	0	63	30	30	0	38	1.58
51583645--51584454	27	30.0	27	82	6	858	28	21	9	41	1.83
51583648--51584455	54	15.0	54	86	2	948	28	21	8	41	1.83
51584471--51584657	27	7.0	27	85	0	232	35	19	20	25	1.96
51584854--51584937	27	3.2	26	88	5	114	19	21	21	38	1.94
51585025--51585083	22	2.7	22	83	0	73	20	23	22	33	1.97
51585439--51585540	6	16.8	6	73	17	86	20	16	13	49	1.80
51585439--51585540	30	3.4	29	89	6	141	20	16	13	49	1.80
51586881--51586919	20	1.9	20	84	5	51	35	2	10	51	1.50
51595669--51595712	23	1.9	24	81	9	56	38	29	0	31	1.58
51615726--51615780	23	2.3	25	75	15	62	36	1	21	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51623670--51623747	27	2.9	27	84	0	102	26	16	17	38	1.92
51627496--51627520	9	2.8	9	100	0	50	12	36	24	28	1.91
51629777--51629926	55	2.8	54	80	4	149	26	15	29	28	1.96
51629749--51629926	27	6.6	27	77	6	146	25	15	28	30	1.96
51629750--51629905	82	1.9	81	81	6	190	25	16	28	30	1.96
51637787--51637936	55	2.8	54	80	4	149	26	15	29	28	1.96
51637759--51637936	27	6.6	27	77	6	146	25	15	28	30	1.96
51637760--51637915	82	1.9	81	81	6	190	25	16	28	30	1.96
51640674--51640777	27	3.9	27	93	0	154	26	14	14	44	1.84
51642753--51642817	34	1.9	34	96	0	121	41	6	10	41	1.65
51644250--51644311	31	2.0	31	93	0	106	32	25	6	35	1.82
51647940--51648217	48	5.7	48	83	2	304	27	21	26	23	1.99
51652971--51653021	20	2.5	20	87	0	75	15	39	31	13	1.87
51658883--51659006	27	4.6	27	93	2	194	26	13	29	30	1.94
51658883--51659006	55	2.3	54	91	1	194	26	13	29	30	1.94
51675277--51675476	41	4.9	41	84	6	235	26	17	26	29	1.98
51675258--51675476	82	2.7	82	82	3	271	26	17	26	29	1.98
51686392--51686558	45	3.7	45	90	0	244	21	20	19	38	1.94
51688834--51688961	54	2.4	54	81	0	148	24	25	21	28	1.99
51691124--51691177	23	2.4	22	78	3	54	48	11	1	38	1.50
51691275--51691488	23	9.3	23	65	6	92	45	14	1	37	1.57
51691184--51691995	92	8.8	93	80	4	704	45	16	2	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51691424--51691986	184	3.1	184	90	1	855	44	17	2	35	1.63
51691359--51691989	276	2.3	273	85	1	803	45	17	2	35	1.62
51695001--51695038	20	2.0	20	85	15	53	39	21	0	39	1.53
51695001--51695038	19	1.9	19	85	15	51	39	21	0	39	1.53
51695263--51695435	46	3.7	46	75	10	172	29	26	20	23	1.99
51695313--51695454	46	3.1	45	71	18	114	29	27	19	23	1.98
51695858--51695917	30	2.0	30	83	0	75	33	25	3	38	1.72
51698648--51698710	33	1.9	33	90	0	99	31	26	14	26	1.95
51698694--51698869	49	3.6	48	79	9	187	25	26	19	28	1.99
51698694--51698874	98	1.9	98	84	1	247	24	27	19	28	1.99
51699579--51699617	20	2.0	20	85	10	53	35	20	0	43	1.52
51702913--51702951	17	2.3	17	95	0	69	23	33	25	17	1.96
51707685--51707709	11	2.3	11	100	0	50	72	0	0	28	0.86
51708239--51708507	47	5.7	46	80	8	251	23	30	18	27	1.98
51708239--51708501	140	1.9	141	84	5	354	23	30	18	27	1.98
51712540--51712635	24	4.0	24	76	8	95	31	22	21	23	1.99
51715017--51715199	79	2.3	81	83	7	223	26	26	22	24	2.00
51714996--51715199	40	5.1	40	78	8	211	25	26	22	25	2.00
51721839--51722008	79	2.1	79	83	3	207	25	21	27	25	2.00
51721839--51722008	40	4.3	39	86	5	198	25	21	27	25	2.00
51721878--51722043	79	2.1	79	79	4	174	25	21	27	24	1.99
51724877--51725028	27	5.6	27	93	3	241	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51724877--51725028	55	2.8	55	94	0	259	26	13	28	30	1.94
51729538--51729741	40	5.1	40	81	5	227	26	27	21	24	1.99
51729559--51729741	79	2.3	80	83	5	228	26	27	21	23	1.99
51731653--51731822	48	3.6	48	81	8	179	28	20	27	22	1.99
51731837--51731966	49	2.6	49	76	10	131	31	20	25	22	1.98
51733526--51733582	16	3.5	16	88	11	89	82	0	0	17	0.67
51733499--51733590	39	2.2	39	79	9	94	72	2	2	22	1.06
51733522--51733582	21	2.9	21	92	7	97	81	0	0	18	0.68
51733522--51733582	5	11.6	5	91	8	79	81	0	0	18	0.68
51733522--51733582	11	5.7	11	88	11	92	81	0	0	18	0.68
51738693--51738804	39	2.9	38	76	10	118	24	20	24	31	1.98
51742387--51742559	49	3.6	48	78	3	170	23	28	21	26	1.99
51742582--51742747	46	3.6	46	80	1	152	24	28	19	28	1.98
51747274--51747379	40	2.7	40	86	7	162	24	26	23	25	2.00
51754918--51755041	34	3.7	35	78	14	111	27	29	20	22	1.99
51768812--51769039	40	5.7	40	88	3	343	25	27	22	24	2.00
51774374--51774516	57	2.5	58	80	4	173	29	17	22	30	1.97
51785818--51786002	40	4.6	39	83	6	212	23	22	28	25	1.99
51785818--51786000	79	2.3	81	83	7	223	24	22	27	25	2.00
51785871--51786035	79	2.1	79	82	6	192	25	20	27	26	1.99
51787914--51787965	27	2.0	26	84	3	68	17	26	21	34	1.95
51795385--51795436	27	2.0	26	84	3	68	17	26	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51795368--51795560	71	2.8	70	90	3	293	18	25	22	33	1.97
51796894--51797051	44	3.7	43	82	8	189	30	24	19	25	1.98
51805277--51805350	32	2.3	32	79	6	87	31	8	24	36	1.84
51809159--51809211	23	2.3	23	93	0	88	24	3	33	37	1.74
51811007--51811214	101	2.1	101	98	0	398	37	9	24	29	1.86
51812723--51812946	40	5.6	40	84	6	283	25	26	23	24	2.00
51812723--51812946	83	2.8	80	86	5	283	25	26	23	24	2.00
51820009--51820082	32	2.3	32	79	6	87	31	8	24	36	1.84
51821069--51821131	13	4.5	13	74	14	63	17	33	38	11	1.85
51827741--51827801	30	2.0	30	83	0	77	31	22	8	37	1.84
51841938--51842095	43	3.7	42	83	5	183	31	25	17	24	1.97
51853909--51854174	103	2.6	104	90	1	410	19	19	30	30	1.96
51867169--51867273	52	2.0	52	94	0	183	34	17	23	24	1.96
51868618--51868651	14	2.2	16	90	10	54	64	5	0	29	1.17
51872030--51872219	40	4.8	40	90	0	281	20	31	15	33	1.94
51872030--51872211	20	9.1	20	67	11	95	19	31	16	31	1.94
51874184--51874217	18	1.9	17	88	5	50	55	0	8	35	1.31
51875735--51876225	243	2.0	243	99	0	964	27	11	16	44	1.82
51877165--51877247	28	3.0	28	98	0	157	36	8	32	22	1.85
51881820--51881875	27	2.1	27	96	0	103	44	5	19	30	1.73
51885254--51885304	26	2.0	26	88	0	75	23	19	21	35	1.96
51885268--51885329	27	2.3	26	83	8	72	27	16	17	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51886913--51886980	32	2.1	32	83	5	84	14	25	2	57	1.52
51888381--51888548	43	3.9	43	77	6	153	27	16	25	30	1.96
51894302--51894362	18	3.4	18	69	15	54	49	0	26	24	1.51
51894698--51894734	18	2.1	18	89	0	56	27	8	13	51	1.69
51899695--51899734	19	2.0	21	90	9	66	52	0	2	45	1.14
51901052--51901090	15	2.7	14	84	7	60	56	0	0	43	0.99
51901054--51901088	15	2.3	15	95	0	61	62	0	0	37	0.95
51907588--51907626	20	2.0	20	85	10	53	28	2	2	66	1.18
51912180--51912216	18	2.1	18	89	0	56	54	13	16	16	1.72
51917213--51917240	14	2.0	14	100	0	56	28	35	28	7	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320